AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563240 MtrunA17_Chr8g0377111 96.410 195 7 0 21 215 320 514 2.74e-133 396
Msa0563240 MtrunA17_Chr3g0100171 41.237 194 107 3 23 215 68 255 3.71e-45 160
Msa0563240 MtrunA17_Chr3g0100131 41.237 194 107 3 23 215 915 1102 2.00e-43 161
Msa0563240 MtrunA17_Chr1g0156271 41.361 191 105 3 23 212 889 1073 3.88e-42 157
Msa0563240 MtrunA17_Chr2g0329131 40.722 194 108 3 23 215 894 1081 3.08e-41 154
Msa0563240 MtrunA17_Chr1g0211961 39.896 193 105 3 23 212 854 1038 2.41e-40 152
Msa0563240 MtrunA17_Chr3g0100151 39.378 193 107 4 23 214 89 272 6.40e-38 137
Msa0563240 MtrunA17_Chr1g0194381 38.421 190 106 3 23 209 389 570 9.25e-38 144
Msa0563240 MtrunA17_Chr3g0099251 38.421 190 106 3 23 209 413 594 3.21e-37 142
Msa0563240 MtrunA17_Chr4g0044491 37.566 189 109 3 23 209 357 538 1.15e-35 137
Msa0563240 MtrunA17_Chr3g0086391 39.896 193 109 4 23 213 731 918 1.53e-35 138
Msa0563240 MtrunA17_Chr2g0283271 37.838 185 109 3 23 206 391 570 1.15e-34 135
Msa0563240 MtrunA17_Chr8g0359501 37.931 203 105 6 22 209 409 605 1.55e-32 129
Msa0563240 MtrunA17_Chr7g0259941 36.946 203 107 6 22 209 409 605 1.21e-31 126
Msa0563240 MtrunA17_Chr1g0208961 34.807 181 114 2 23 203 716 892 4.12e-24 104
Msa0563240 MtrunA17_Chr8g0392581 35.263 190 111 5 23 205 662 846 8.54e-24 103
Msa0563240 MtrunA17_Chr8g0355531 34.483 145 94 1 26 170 12 155 4.10e-23 94.7
Msa0563240 MtrunA17_Chr1g0164621 29.060 234 147 6 23 240 308 538 6.24e-22 97.8
Msa0563240 MtrunA17_Chr3g0082091 29.060 234 147 6 23 240 306 536 8.69e-22 97.4
Msa0563240 MtrunA17_Chr3g0123681 29.744 195 129 4 23 212 586 777 2.52e-19 90.1
Msa0563240 MtrunA17_Chr1g0177141 32.727 165 106 3 33 196 661 821 2.67e-18 86.7
Msa0563240 MtrunA17_Chr5g0442401 32.474 194 123 4 11 199 650 840 2.68e-18 86.7
Msa0563240 MtrunA17_Chr0c12g0493631 28.108 185 123 2 22 196 258 442 4.56e-18 85.9
Msa0563240 MtrunA17_Chr6g0475991 31.783 129 83 3 87 213 1 126 1.76e-17 80.9
Msa0563240 MtrunA17_Chr8g0354491 32.143 112 75 1 102 213 4 114 5.25e-17 77.4
Msa0563240 MtrunA17_Chr8g0355291 30.909 165 109 3 33 196 647 807 2.20e-16 80.9
Msa0563240 MtrunA17_Chr4g0067511 38.938 113 67 1 23 135 418 528 1.81e-15 78.2
Msa0563240 MtrunA17_Chr5g0432591 50.000 72 36 0 23 94 529 600 2.54e-15 77.4
Msa0563240 MtrunA17_Chr4g0010901 38.938 113 67 1 23 135 769 879 3.70e-15 77.4
Msa0563240 MtrunA17_Chr4g0077061 29.412 170 108 3 21 187 1003 1163 3.12e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563240 AT1G27900.3 75.127 197 47 2 21 215 323 519 3.06e-102 312
Msa0563240 AT1G27900.2 75.127 197 47 2 21 215 323 519 6.67e-102 312
Msa0563240 AT1G27900.1 75.127 197 47 2 21 215 323 519 1.09e-100 313
Msa0563240 AT2G35340.2 41.361 191 109 2 23 213 585 772 1.59e-42 158
Msa0563240 AT2G35340.1 41.361 191 109 2 23 213 723 910 2.05e-42 158
Msa0563240 AT5G13010.1 37.963 216 127 3 1 215 859 1068 7.04e-42 157
Msa0563240 AT1G32490.2 40.415 193 108 4 23 213 713 900 1.40e-41 156
Msa0563240 AT1G32490.1 40.415 193 108 4 23 213 723 910 1.69e-41 155
Msa0563240 AT3G26560.1 41.361 191 105 3 23 212 834 1018 1.76e-41 155
Msa0563240 AT4G16680.2 40.625 192 105 4 23 212 454 638 2.41e-39 149
Msa0563240 AT2G47250.1 39.572 187 102 3 23 206 397 575 1.45e-37 144
Msa0563240 AT3G62310.1 38.421 190 106 3 23 209 393 574 2.01e-37 143
Msa0563240 AT4G18465.1 34.715 193 120 3 23 214 386 573 1.50e-31 126
Msa0563240 AT3G62310.3 45.455 132 70 1 23 154 393 522 1.71e-31 125
Msa0563240 AT3G62310.2 45.455 132 70 1 23 154 393 522 1.82e-31 125
Msa0563240 AT2G01130.2 38.421 190 108 3 21 205 540 725 1.29e-28 118
Msa0563240 AT2G01130.1 38.421 190 108 3 21 205 605 790 1.87e-28 117
Msa0563240 AT1G26370.1 35.961 203 109 6 22 209 401 597 6.83e-28 115
Msa0563240 AT2G35920.2 34.737 190 112 5 23 205 554 738 8.13e-23 100
Msa0563240 AT2G35920.3 34.737 190 112 5 23 205 644 828 8.19e-23 100
Msa0563240 AT2G35920.1 34.737 190 112 5 23 205 612 796 1.03e-22 100
Msa0563240 AT5G14900.1 32.414 145 94 2 62 206 2 142 3.11e-21 93.2
Msa0563240 AT1G33390.2 37.600 125 69 2 23 140 724 846 5.57e-21 95.5
Msa0563240 AT1G33390.1 37.600 125 69 2 23 140 724 846 5.57e-21 95.5
Msa0563240 AT4G16680.1 49.485 97 43 2 23 119 534 624 3.06e-18 86.7
Msa0563240 AT4G01020.1 29.897 194 128 5 23 211 622 812 6.38e-18 86.3
Msa0563240 AT1G48650.1 31.073 177 112 4 35 205 699 871 1.27e-17 85.1
Msa0563240 AT1G48650.2 31.073 177 112 4 35 205 699 871 1.32e-17 85.1
Msa0563240 AT5G10370.1 30.412 194 127 5 23 211 625 815 1.74e-17 84.7
Msa0563240 AT1G58060.1 25.726 241 162 4 21 250 1022 1256 4.86e-17 83.6
Msa0563240 AT1G58050.1 27.568 185 124 2 22 196 990 1174 2.05e-16 81.6
Msa0563240 AT5G04895.1 29.545 176 116 3 35 205 660 832 2.73e-16 81.3
Msa0563240 AT2G30800.2 31.579 190 124 4 11 196 305 492 1.01e-15 79.3
Msa0563240 AT2G30800.1 31.579 190 124 4 11 196 648 835 1.97e-15 78.6
Msa0563240 AT1G06670.2 29.688 192 125 5 11 196 672 859 4.37e-14 74.3
Msa0563240 AT1G06670.1 29.688 192 125 5 11 196 672 859 4.67e-14 74.3

Find 239 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAATTTGTACACATTTA+AGG 0.079863 4_1:+63560335 None:intergenic
ACATTCTTCTTGGGCAAATT+TGG 0.121501 4_1:+63560077 None:intergenic
ATATTCTATTCTATGATTAT+TGG 0.129128 4_1:-63559358 Msa0563240:three_prime_UTR
AGAGAAGATCTCTGAATTTC+AGG 0.221026 4_1:+63565624 None:intergenic
TCACAGTTCACTTCAATTCT+TGG 0.225816 4_1:+63561683 None:intergenic
AAAACTCATCATGGTAGATT+TGG 0.235724 4_1:+63565661 None:intergenic
TGCAAACCAAATGATAAATA+AGG 0.237782 4_1:-63561386 Msa0563240:three_prime_UTR
ATCCCTGTCAAGAACTTTAA+TGG 0.241508 4_1:-63564428 Msa0563240:CDS
GCTCGAATATCTGCAGTAAT+TGG 0.246282 4_1:+63563807 None:intergenic
GCATTGAGCTCTGATGAATT+TGG 0.252865 4_1:-63560474 Msa0563240:three_prime_UTR
TTAATGGAAGCCAACAATTA+TGG 0.253598 4_1:-63564412 Msa0563240:CDS
AAGTAGTTGGTAAAAGTTTC+CGG 0.253917 4_1:-63559922 Msa0563240:three_prime_UTR
CCTTAAATGTGTACAAATTA+AGG 0.255922 4_1:-63560335 Msa0563240:intron
GTTCACCCTTATTTATCATT+TGG 0.286888 4_1:+63561380 None:intergenic
GAGACAGGGCTGGGGTCTTT+TGG 0.287043 4_1:-63562639 Msa0563240:CDS
AATTATGATGGTTAATTTCC+CGG 0.291547 4_1:-63561442 Msa0563240:three_prime_UTR
TCAAATGGCCGTCGCAAGGC+TGG 0.294057 4_1:+63562538 None:intergenic
ATTGACGCTATTGATGAAAA+TGG 0.294362 4_1:-63565220 Msa0563240:CDS
CTAACCTAAGTTGTCAATAT+CGG 0.298406 4_1:+63562421 None:intergenic
TGTTAAAATATTTAGTTAGA+AGG 0.303557 4_1:-63563672 Msa0563240:intron
GGTAACTATCTCAATCTATA+CGG 0.308158 4_1:+63559489 None:intergenic
AAAAGTATCATTTATTTGTT+TGG 0.308458 4_1:-63559520 Msa0563240:three_prime_UTR
CTTCCTGATGGTTCTGGCTT+GGG 0.318587 4_1:-63563839 Msa0563240:CDS
AGCAACCTCAACATTCTTCT+TGG 0.326316 4_1:+63560067 None:intergenic
CTTTAATTACCTGGACTACT+TGG 0.341545 4_1:+63560802 None:intergenic
TGGCGCTATTGCTGTCGATC+AGG 0.342167 4_1:-63562619 Msa0563240:CDS
TCTAACCTTCCTGATGGTTC+TGG 0.345167 4_1:-63563845 Msa0563240:CDS
AATTTACCGAGAGGAGAAAA+AGG 0.346039 4_1:-63559683 Msa0563240:three_prime_UTR
AAATACTGAGATGGATTAAC+AGG 0.346053 4_1:+63561771 None:intergenic
TGGTAAAAGTTTCCGGAGAA+TGG 0.369160 4_1:-63559915 Msa0563240:three_prime_UTR
CTCCAACCCTGGTGTCATAT+TGG 0.374556 4_1:-63563589 Msa0563240:CDS
GGTATTAAGCTTGTTAATGA+TGG 0.374953 4_1:+63560356 None:intergenic
CATTGAGCTCTGATGAATTT+GGG 0.377102 4_1:-63560473 Msa0563240:three_prime_UTR
CCTTCCTGATGGTTCTGGCT+TGG 0.381603 4_1:-63563840 Msa0563240:CDS
AAAACTCGTGCCTTCACGTT+GGG 0.383719 4_1:-63563072 Msa0563240:intron
TTATGAGTTATTTAAGCCTT+TGG 0.384807 4_1:-63563100 Msa0563240:CDS
CCTCCTCGCCTTGGATATAG+TGG 0.386552 4_1:-63563163 Msa0563240:CDS
CCGTCGCAAGGCTGGGTGGC+TGG 0.387002 4_1:+63562546 None:intergenic
GTGTTAGATATGTCCTAGTT+TGG 0.387719 4_1:-63561621 Msa0563240:three_prime_UTR
AGTTATGCAACCATAATTGT+TGG 0.388104 4_1:+63564402 None:intergenic
AATCAGCGGGCAGGCAGAGC+TGG 0.388281 4_1:-63565723 Msa0563240:CDS
ATTCAGAGATCTTCTCTTGC+CGG 0.389210 4_1:-63565618 Msa0563240:CDS
AATTTGAGAATGTCAATATC+AGG 0.389242 4_1:+63565564 None:intergenic
GTTAAGAAAATATATGTAAG+TGG 0.401227 4_1:+63560983 None:intergenic
AAACTCATCATGGTAGATTT+GGG 0.402001 4_1:+63565662 None:intergenic
GGTAGATTTGGGAAGGATAT+AGG 0.402863 4_1:+63565673 None:intergenic
ATTCCGCTATTCTAGTTTCA+AGG 0.403008 4_1:-63562455 Msa0563240:CDS
TTTATGAGTAGTGCATATTT+GGG 0.407278 4_1:+63561337 None:intergenic
TTGCTTCAAGGCATCTTGTA+AGG 0.407486 4_1:+63565252 None:intergenic
CCTTGGGTATAAGAACAAAT+AGG 0.407709 4_1:-63560947 Msa0563240:three_prime_UTR
CCATCAGGAAGGTTAGATAT+TGG 0.409121 4_1:+63563851 None:intergenic
TCTCAATCTGATGTCTGTTA+TGG 0.411304 4_1:+63559570 None:intergenic
AATGAAGTTTAGAGTAAAAG+TGG 0.412274 4_1:-63561736 Msa0563240:three_prime_UTR
TATGTTCCGTTGAGATGAAA+TGG 0.413331 4_1:-63560386 Msa0563240:three_prime_UTR
ATAGGAAAGGGGAAGAGTTC+CGG 0.414027 4_1:-63560929 Msa0563240:three_prime_UTR
GTGCAAAGATCATGGCTTGC+AGG 0.415703 4_1:-63563753 Msa0563240:intron
CTTCCTCCCGTTAATGATAT+CGG 0.418054 4_1:+63561417 None:intergenic
CTTCCATTAAAGTTCTTGAC+AGG 0.420329 4_1:+63564425 None:intergenic
ACTACCATTTCCACTGCATC+TGG 0.422098 4_1:+63561835 None:intergenic
GGTAAAAGTTTCCGGAGAAT+GGG 0.423998 4_1:-63559914 Msa0563240:three_prime_UTR
TGTGCTTTACTTGAAGTCAT+TGG 0.426699 4_1:-63565592 Msa0563240:CDS
CCATTCTGATATTTGTTGAA+TGG 0.430700 4_1:-63559750 Msa0563240:three_prime_UTR
GCAACCTCAACATTCTTCTT+GGG 0.431042 4_1:+63560068 None:intergenic
TTACCTGGACTACTTGGCCT+TGG 0.433667 4_1:+63560808 None:intergenic
CCCGGCACCGATATCATTAA+CGG 0.434005 4_1:-63561424 Msa0563240:three_prime_UTR
TAACTTTGCAATAGAACCCT+TGG 0.434242 4_1:-63560964 Msa0563240:three_prime_UTR
CCTATTTGTTCTTATACCCA+AGG 0.435368 4_1:+63560947 None:intergenic
GGCTGCAAAGGTGGTTCAAA+TGG 0.438636 4_1:+63562523 None:intergenic
ATTGTTTGACATTTAGTTCA+AGG 0.440724 4_1:+63559618 None:intergenic
AGAAGGTAGGTTGTCAAACT+TGG 0.442668 4_1:-63563655 Msa0563240:CDS
CTATACAACTTAACCAAACT+AGG 0.446598 4_1:+63561608 None:intergenic
GCAAACCAAATGATAAATAA+GGG 0.446698 4_1:-63561385 Msa0563240:three_prime_UTR
AACTTTGCAATAGAACCCTT+GGG 0.447318 4_1:-63560963 Msa0563240:three_prime_UTR
AAAATATTTAGTTAGAAGGT+AGG 0.448540 4_1:-63563668 Msa0563240:intron
GCATAGCAGTGCGGAGCATT+TGG 0.453470 4_1:-63563623 Msa0563240:CDS
AATGGTTCAATTACAAGTGT+TGG 0.453644 4_1:-63565202 Msa0563240:CDS
TCTATCACACATTGCAGCTC+AGG 0.459895 4_1:+63562480 None:intergenic
TCTGAATCTGCATTGCTACC+AGG 0.462442 4_1:-63564349 Msa0563240:CDS
AGTATCATTTATTTGTTTGG+TGG 0.464170 4_1:-63559517 Msa0563240:three_prime_UTR
GCTTCCAGATGCAGTGGAAA+TGG 0.465969 4_1:-63561839 Msa0563240:three_prime_UTR
GAAAGAAAGATGCATCATAA+TGG 0.467502 4_1:-63560849 Msa0563240:three_prime_UTR
TCATGGTATACAACATAGTC+TGG 0.469303 4_1:+63560444 None:intergenic
TAAAATGTAGAATTAAATTG+TGG 0.471213 4_1:-63561100 Msa0563240:three_prime_UTR
TTCGTCTCCCCTCCTCGCCT+TGG 0.471472 4_1:-63563172 Msa0563240:CDS
GAAATCGTTCTCTGGCGGCT+TGG 0.472281 4_1:+63560015 None:intergenic
TGAGTTATTTAAGCCTTTGG+AGG 0.473692 4_1:-63563097 Msa0563240:CDS
AGAGCTGGACGAACACGACC+AGG 0.477884 4_1:-63565708 Msa0563240:CDS
ATGGTACAATGCTCAGTCTC+AGG 0.480303 4_1:+63559769 None:intergenic
TAATTTGACTCCCCATTCTC+CGG 0.480533 4_1:+63559903 None:intergenic
CCCGTTAATGATATCGGTGC+CGG 0.480889 4_1:+63561423 None:intergenic
GGCGCTATTGCTGTCGATCA+GGG 0.483323 4_1:-63562618 Msa0563240:CDS
AAAATATATGTAAGTGGGAG+AGG 0.485041 4_1:+63560989 None:intergenic
ATGTTAGTGTTGGCTTGTTG+AGG 0.486292 4_1:-63559949 Msa0563240:three_prime_UTR
TAACCTAAGTTGTCAATATC+GGG 0.486737 4_1:+63562422 None:intergenic
TTGCTTATCCCCACTTGTCA+TGG 0.490423 4_1:-63559707 Msa0563240:three_prime_UTR
CATCAAAATGATTATGACAT+TGG 0.491734 4_1:-63563779 Msa0563240:CDS
TAACATGTACGATAACTAGC+TGG 0.492346 4_1:+63561015 None:intergenic
CAACCCTGGTGTCATATTGG+AGG 0.492394 4_1:-63563586 Msa0563240:intron
TACTGCAGATATTCGAGCGT+TGG 0.494490 4_1:-63563802 Msa0563240:CDS
CTATTTGTTCTTATACCCAA+GGG 0.495053 4_1:+63560948 None:intergenic
TCCTTTGTCTGTAGTGGTGG+TGG 0.496145 4_1:-63560137 Msa0563240:intron
TTGGATGTTATGAATTATGA+TGG 0.496979 4_1:-63561454 Msa0563240:three_prime_UTR
CACTATATCCAAGGCGAGGA+GGG 0.499435 4_1:+63563164 None:intergenic
CCGGCACCGATATCATTAAC+GGG 0.499575 4_1:-63561423 Msa0563240:three_prime_UTR
GTATAAGAACAAATAGGAAA+GGG 0.499604 4_1:-63560941 Msa0563240:three_prime_UTR
TCAGAGCTCAATGCAGATGA+TGG 0.501762 4_1:+63560483 None:intergenic
CAAATGGCCGTCGCAAGGCT+GGG 0.502448 4_1:+63562539 None:intergenic
ACGAGCAAGAAATCGTTCTC+TGG 0.503638 4_1:+63560007 None:intergenic
TCTCATGTTTATTCACCCGC+TGG 0.510093 4_1:-63559389 Msa0563240:three_prime_UTR
AATCAGATATAATTGCTTCA+AGG 0.511735 4_1:+63565240 None:intergenic
CTACCCGATATTGACAACTT+AGG 0.512765 4_1:-63562425 Msa0563240:intron
GAGACGAAGCAGCACAAGGT+AGG 0.517003 4_1:+63563187 None:intergenic
TGTCTGTAGTGGTGGTGGCA+TGG 0.518090 4_1:-63560132 Msa0563240:intron
GGAGGGATTATCGAAATTTG+AGG 0.518481 4_1:-63560908 Msa0563240:three_prime_UTR
TCAAATTTCGATAATCCCTC+CGG 0.519733 4_1:+63560910 None:intergenic
ACCTGTGGAGATGTTAGTGT+TGG 0.521030 4_1:-63559959 Msa0563240:three_prime_UTR
TGTTAGTGTTGGCTTGTTGA+GGG 0.522044 4_1:-63559948 Msa0563240:three_prime_UTR
AAAATGTAGAATTAAATTGT+GGG 0.522051 4_1:-63561099 Msa0563240:three_prime_UTR
TCACCCAAGCCAGAACCATC+AGG 0.523824 4_1:+63563836 None:intergenic
TTTCCAAGGCCAAGTAGTCC+AGG 0.525378 4_1:-63560811 Msa0563240:intron
TATCGAACCCTGGGTTTCCA+AGG 0.525738 4_1:-63560825 Msa0563240:three_prime_UTR
GAACATACATTTCTCATGAA+TGG 0.526110 4_1:+63560402 None:intergenic
GTGCAAGCTAATCAGCGGGC+AGG 0.526117 4_1:-63565732 Msa0563240:CDS
ATCTAACACAAGAACGATGA+AGG 0.526126 4_1:+63561635 None:intergenic
TTATCTGAGATAACTGCTTA+CGG 0.526253 4_1:+63561919 None:intergenic
CTGAATCTGCATTGCTACCA+GGG 0.526573 4_1:-63564348 Msa0563240:CDS
GACAAGTGGGGATAAGCAAA+AGG 0.527321 4_1:+63559711 None:intergenic
CATAATGGTTATCGAACCCT+GGG 0.530123 4_1:-63560834 Msa0563240:three_prime_UTR
TTGTTGAGGGACAAAGTAGT+TGG 0.533214 4_1:-63559935 Msa0563240:three_prime_UTR
ATTGGTTGGTGCAAAGATCA+TGG 0.533991 4_1:-63563761 Msa0563240:CDS
AACACTGCAGAGACAGGGCT+GGG 0.534246 4_1:-63562648 Msa0563240:intron
GTAACTATCTCAATCTATAC+GGG 0.534522 4_1:+63559490 None:intergenic
TAACTGCTTACGGACATCTC+TGG 0.537063 4_1:+63561929 None:intergenic
TTGTTTGACATTTAGTTCAA+GGG 0.537257 4_1:+63559619 None:intergenic
GTATTAAGCTTGTTAATGAT+GGG 0.538094 4_1:+63560357 None:intergenic
ATGTGGAAAACAGAAATGTC+AGG 0.538405 4_1:+63559880 None:intergenic
TGGTGGCATGGATCATGTTG+TGG 0.538949 4_1:-63560120 Msa0563240:three_prime_UTR
CTCCAATATGACACCAGGGT+TGG 0.539589 4_1:+63563587 None:intergenic
GATAATGCAGAAAATCGCTA+AGG 0.542424 4_1:-63561901 Msa0563240:three_prime_UTR
TGTGCTAAATCTTCTGATGT+TGG 0.542984 4_1:+63559797 None:intergenic
TAGCAGTGCGGAGCATTTGG+TGG 0.543971 4_1:-63563620 Msa0563240:CDS
ATTAAAGTTCTTGACAGGGA+TGG 0.545587 4_1:+63564430 None:intergenic
TTAAGAAAATATATGTAAGT+GGG 0.546941 4_1:+63560984 None:intergenic
TAACACTGCAGAGACAGGGC+TGG 0.548765 4_1:-63562649 Msa0563240:intron
GGTATAAGAACAAATAGGAA+AGG 0.551630 4_1:-63560942 Msa0563240:three_prime_UTR
CCGTTAATGATATCGGTGCC+GGG 0.555237 4_1:+63561424 None:intergenic
GCTCTAGCAGCAAGGTGAGA+TGG 0.555490 4_1:+63562502 None:intergenic
CTACTTGGCCTTGGAAACCC+AGG 0.555871 4_1:+63560817 None:intergenic
TCATAATGGTTATCGAACCC+TGG 0.557276 4_1:-63560835 Msa0563240:three_prime_UTR
AGGTGAGATGGCTGCAAAGG+TGG 0.559096 4_1:+63562514 None:intergenic
CTAAATGTCAAACAATTCTG+AGG 0.559434 4_1:-63559611 Msa0563240:three_prime_UTR
TATAGGCGGTAGCATTTCCC+TGG 0.560212 4_1:+63565690 None:intergenic
CAGAGTGCAAGCTAATCAGC+GGG 0.560667 4_1:-63565736 Msa0563240:CDS
TGGGTACGATTCTCCAACCC+TGG 0.560852 4_1:-63563600 Msa0563240:CDS
CACATAAAAGCAACGACATG+TGG 0.561223 4_1:+63559863 None:intergenic
CTGCATTGCTACCAGGGCAG+AGG 0.561930 4_1:-63564342 Msa0563240:intron
GCAAGGTGAGATGGCTGCAA+AGG 0.561976 4_1:+63562511 None:intergenic
AGACGAAGCAGCACAAGGTA+GGG 0.563184 4_1:+63563188 None:intergenic
TAGAGCTTCAAGTGAGTCCA+TGG 0.567294 4_1:+63562572 None:intergenic
TAATGGACCCACTATATCCA+AGG 0.568246 4_1:+63563155 None:intergenic
TCTTACATGACGGAGAATCA+AGG 0.568294 4_1:+63565535 None:intergenic
GTGAACACTAACCTCTGCCC+TGG 0.568747 4_1:+63564331 None:intergenic
TGCACCTCCAATATGACACC+AGG 0.570409 4_1:+63563582 None:intergenic
TGGTTCAAATGGCCGTCGCA+AGG 0.571257 4_1:+63562534 None:intergenic
TAAATGTCAAACAATTCTGA+GGG 0.572257 4_1:-63559610 Msa0563240:three_prime_UTR
GGTAAATTTCCATGACAAGT+GGG 0.574269 4_1:+63559698 None:intergenic
AAAATGATTATGACATTGGT+TGG 0.574351 4_1:-63563775 Msa0563240:CDS
TAGAATATGTAACATTCCAG+CGG 0.575231 4_1:+63559373 None:intergenic
CGGTAAATTTCCATGACAAG+TGG 0.577191 4_1:+63559697 None:intergenic
TGTGGGCTATGCGAATCAGC+TGG 0.577515 4_1:-63560874 Msa0563240:three_prime_UTR
CTTCAGATACAAACTCAGCT+AGG 0.577964 4_1:+63559468 None:intergenic
ATATCTGCAGTAATTGGATG+TGG 0.578824 4_1:+63563813 None:intergenic
AAGCAGCACAAGGTAGGGAA+AGG 0.582463 4_1:+63563193 None:intergenic
CTTGACAGGGATGGTTCTAA+CGG 0.582709 4_1:+63564439 None:intergenic
CCAGCCACCCAGCCTTGCGA+CGG 0.583668 4_1:-63562546 Msa0563240:CDS
CAGCTCAGGCTCTAGCAGCA+AGG 0.585567 4_1:+63562494 None:intergenic
ATGTTCCGTTGAGATGAAAT+GGG 0.586973 4_1:-63560385 Msa0563240:three_prime_UTR
ACTATATCCAAGGCGAGGAG+GGG 0.587410 4_1:+63563165 None:intergenic
AGAATATGTAACATTCCAGC+GGG 0.588474 4_1:+63559374 None:intergenic
CTCCTCGCCTTGGATATAGT+GGG 0.589108 4_1:-63563162 Msa0563240:CDS
CCATTCAACAAATATCAGAA+TGG 0.589313 4_1:+63559750 None:intergenic
TTTGCCCAAGAAGAATGTTG+AGG 0.592188 4_1:-63560072 Msa0563240:three_prime_UTR
ACATTTCTCATGAATGGTCG+TGG 0.592269 4_1:+63560408 None:intergenic
AACATGTACGATAACTAGCT+GGG 0.593488 4_1:+63561016 None:intergenic
TATAAGAACAAATAGGAAAG+GGG 0.593882 4_1:-63560940 Msa0563240:three_prime_UTR
TTGAGGAAGGCTCTATGTGT+GGG 0.599799 4_1:-63560891 Msa0563240:three_prime_UTR
CTTCAAGTAAAGCACACTGC+CGG 0.599828 4_1:+63565599 None:intergenic
ATTTGAGAATGTCAATATCA+GGG 0.599951 4_1:+63565565 None:intergenic
AAATAACAAAGTTGTTCTCG+TGG 0.600958 4_1:+63561279 None:intergenic
GCCAACACTAACATCTCCAC+AGG 0.603220 4_1:+63559958 None:intergenic
GTGGTGTTGCAATTAGCTCA+TGG 0.607289 4_1:+63560427 None:intergenic
ATATATATGAATGAAACAAG+AGG 0.607360 4_1:-63559433 Msa0563240:three_prime_UTR
TTCCATTAAAGTTCTTGACA+GGG 0.609577 4_1:+63564426 None:intergenic
TTTGAGGAAGGCTCTATGTG+TGG 0.613001 4_1:-63560892 Msa0563240:three_prime_UTR
CCACTATATCCAAGGCGAGG+AGG 0.615360 4_1:+63563163 None:intergenic
TCATCATGGTAGATTTGGGA+AGG 0.615990 4_1:+63565666 None:intergenic
AAATGTAGAATTAAATTGTG+GGG 0.616988 4_1:-63561098 Msa0563240:three_prime_UTR
ATAGGGTTTAAAAGCTCTTG+CGG 0.617815 4_1:-63561246 Msa0563240:three_prime_UTR
GTAAAAGTTTCCGGAGAATG+GGG 0.619666 4_1:-63559913 Msa0563240:three_prime_UTR
TAACAAAGTTGTTCTCGTGG+TGG 0.620216 4_1:+63561282 None:intergenic
AGCAGTGCGGAGCATTTGGT+GGG 0.620467 4_1:-63563619 Msa0563240:CDS
CCAATATCTAACCTTCCTGA+TGG 0.621925 4_1:-63563851 Msa0563240:CDS
TGCATAACACTGCAGAGACA+GGG 0.624002 4_1:-63562653 Msa0563240:intron
AGGGGAGACGAAGCAGCACA+AGG 0.624277 4_1:+63563183 None:intergenic
CAATTATGGTTGCATAACTG+AGG 0.626159 4_1:-63564398 Msa0563240:CDS
TGCAGATTCAGATGATAACA+TGG 0.628040 4_1:+63564360 None:intergenic
ATAATGCAGAAAATCGCTAA+GGG 0.629350 4_1:-63561900 Msa0563240:three_prime_UTR
TAATGCGCTTCCAGATGCAG+TGG 0.629658 4_1:-63561845 Msa0563240:three_prime_UTR
TGTCAATATCGGGTAGCAGT+CGG 0.631141 4_1:+63562432 None:intergenic
TTGCGGTGAAATAATTTACA+CGG 0.632477 4_1:-63561229 Msa0563240:three_prime_UTR
TAAAACTCGTGCCTTCACGT+TGG 0.633383 4_1:-63563073 Msa0563240:CDS
AATATTCAAACCCAACGTGA+AGG 0.634496 4_1:+63563062 None:intergenic
ACACTGCAGAGACAGGGCTG+GGG 0.635162 4_1:-63562647 Msa0563240:intron
GGATTATCGAAATTTGAGGA+AGG 0.638180 4_1:-63560904 Msa0563240:three_prime_UTR
GTAAATTTCCATGACAAGTG+GGG 0.638733 4_1:+63559699 None:intergenic
ATGGCCGTCGCAAGGCTGGG+TGG 0.638968 4_1:+63562542 None:intergenic
AGTGAGAACTGTTATACCTG+TGG 0.645005 4_1:-63559974 Msa0563240:three_prime_UTR
ATCAACTGAATGAAGGTGCG+AGG 0.647707 4_1:-63561963 Msa0563240:intron
TATAACCCATTTCATCTCAA+CGG 0.648192 4_1:+63560380 None:intergenic
GCAGAGTGCAAGCTAATCAG+CGG 0.651665 4_1:-63565737 Msa0563240:intron
GAGCTGGACGAACACGACCA+GGG 0.653654 4_1:-63565707 Msa0563240:CDS
CGGCCTTGAAACTAGAATAG+CGG 0.657922 4_1:+63562452 None:intergenic
GTGAACTGTGAAATTAACAT+GGG 0.658928 4_1:-63561671 Msa0563240:three_prime_UTR
AGCAAGAAATCGTTCTCTGG+CGG 0.660232 4_1:+63560010 None:intergenic
TGGCATGGATCATGTTGTGG+AGG 0.664170 4_1:-63560117 Msa0563240:three_prime_UTR
AGTGAACTGTGAAATTAACA+TGG 0.665809 4_1:-63561672 Msa0563240:three_prime_UTR
TACTTGGCCTTGGAAACCCA+GGG 0.670530 4_1:+63560818 None:intergenic
CTCTGTTGTGCATAGCAGTG+CGG 0.671159 4_1:-63563632 Msa0563240:CDS
CCAAGCCAGAACCATCAGGA+AGG 0.674831 4_1:+63563840 None:intergenic
GACCCACTATATCCAAGGCG+AGG 0.675457 4_1:+63563160 None:intergenic
GGAAAGGGGAAGAGTTCCGG+AGG 0.675751 4_1:-63560926 Msa0563240:three_prime_UTR
TGTCATGGAAATTTACCGAG+AGG 0.695775 4_1:-63559692 Msa0563240:three_prime_UTR
TGAACTGTGAAATTAACATG+GGG 0.702597 4_1:-63561670 Msa0563240:three_prime_UTR
AAATGTCAAACAATTCTGAG+GGG 0.704187 4_1:-63559609 Msa0563240:three_prime_UTR
GCACCGATATCATTAACGGG+AGG 0.719407 4_1:-63561420 Msa0563240:three_prime_UTR
AGATTTGGGAAGGATATAGG+CGG 0.722184 4_1:+63565676 None:intergenic
GCACCTCCAATATGACACCA+GGG 0.733077 4_1:+63563583 None:intergenic
GAAAGGGGAAGAGTTCCGGA+GGG 0.749834 4_1:-63560925 Msa0563240:three_prime_UTR
TGAGAATGTCAATATCAGGG+AGG 0.762249 4_1:+63565568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTATATTTTTTTTTAATT+TGG + chr4_1:63560544-63560563 None:intergenic 10.0%
!! AATTATACAATAAAACATAA+TGG - chr4_1:63560863-63560882 Msa0563240:three_prime_UTR 10.0%
!!! AAAAAAAAGTATAATAGTAA+AGG + chr4_1:63560982-63561001 None:intergenic 10.0%
!!! TGTAAAATTCTATATTTTAT+TGG - chr4_1:63562306-63562325 Msa0563240:intron 10.0%
!! ATAATATATGTAATTATTCT+GGG - chr4_1:63563630-63563649 Msa0563240:CDS 10.0%
!!! TGTTGTTTTATTTTTTAAGT+TGG + chr4_1:63559482-63559501 None:intergenic 15.0%
!! AATTTCAAATAGTTAGTTAT+TGG + chr4_1:63559531-63559550 None:intergenic 15.0%
!! AATTTCAAATAGTTAGTTAT+TGG + chr4_1:63559531-63559550 None:intergenic 15.0%
!!! TTTATTCTTTCTTCATTTTT+TGG - chr4_1:63560192-63560211 Msa0563240:intron 15.0%
!!! TTATTCTTTCTTCATTTTTT+GGG - chr4_1:63560193-63560212 Msa0563240:intron 15.0%
!!! TAAAAAAAGAACAAGTTTTA+TGG + chr4_1:63561075-63561094 None:intergenic 15.0%
!! TGTTAAAATATTTAGTTAGA+AGG - chr4_1:63561944-63561963 Msa0563240:three_prime_UTR 15.0%
!! AAATTAGTAAATAAAAATGC+AGG + chr4_1:63563533-63563552 None:intergenic 15.0%
!! CATAATATATGTAATTATTC+TGG - chr4_1:63563629-63563648 Msa0563240:CDS 15.0%
!! TTATTAAAAAAATACTGAGA+TGG + chr4_1:63563857-63563876 None:intergenic 15.0%
!!! ATACTATTGATTGATATTTT+TGG - chr4_1:63564143-63564162 Msa0563240:intron 15.0%
!! TAAAATGTAGAATTAAATTG+TGG - chr4_1:63564516-63564535 Msa0563240:intron 15.0%
!! AAAATGTAGAATTAAATTGT+GGG - chr4_1:63564517-63564536 Msa0563240:intron 15.0%
!! CTAATTTGAATGAAAAAAAT+GGG + chr4_1:63564573-63564592 None:intergenic 15.0%
!! ACTAATTTGAATGAAAAAAA+TGG + chr4_1:63564574-63564593 None:intergenic 15.0%
!! TTAAGAAAATATATGTAAGT+GGG + chr4_1:63564635-63564654 None:intergenic 15.0%
!! ATTATAAAACTTTAATTACC+TGG + chr4_1:63564826-63564845 None:intergenic 15.0%
!!! ACAATTTTTTCTTCTTTATT+TGG - chr4_1:63565413-63565432 Msa0563240:intron 15.0%
!!! CAATTTTTTCTTCTTTATTT+GGG - chr4_1:63565414-63565433 Msa0563240:intron 15.0%
!!! AATTTTTTCTTCTTTATTTG+GGG - chr4_1:63565415-63565434 Msa0563240:intron 15.0%
!!! AAAAGTATCATTTATTTGTT+TGG - chr4_1:63566096-63566115 Msa0563240:intron 15.0%
!! ATATTCTATTCTATGATTAT+TGG - chr4_1:63566258-63566277 Msa0563240:CDS 15.0%
!!! TTTTTAAGTTGGAAGTTATT+AGG + chr4_1:63559471-63559490 None:intergenic 20.0%
!! AACAAAAGAATTATAGACAT+TGG - chr4_1:63559744-63559763 Msa0563240:three_prime_UTR 20.0%
!!! AATTATAGACATTGGTTAAA+AGG - chr4_1:63559752-63559771 Msa0563240:three_prime_UTR 20.0%
!! TATAAAAAGATCTTACATGA+CGG + chr4_1:63560094-63560113 None:intergenic 20.0%
!! CAGTTTAAATTTCAATTCTT+CGG - chr4_1:63560146-63560165 Msa0563240:intron 20.0%
!! AAGAATAAAAGAAAAGGTAA+AGG + chr4_1:63560181-63560200 None:intergenic 20.0%
!! TGAAGAAAGAATAAAAGAAA+AGG + chr4_1:63560187-63560206 None:intergenic 20.0%
!! AAAAACCTATTAAAATGTCA+AGG + chr4_1:63560296-63560315 None:intergenic 20.0%
!! GACTAGAAAATAATAACATA+GGG + chr4_1:63560619-63560638 None:intergenic 20.0%
!! TGACTAGAAAATAATAACAT+AGG + chr4_1:63560620-63560639 None:intergenic 20.0%
!! TTTCAGTTTCAAAATATCTA+TGG + chr4_1:63560820-63560839 None:intergenic 20.0%
!! TTCTATCATTATTATGTTCA+TGG - chr4_1:63561000-63561019 Msa0563240:three_prime_UTR 20.0%
!!! TTAGCATGAATATTTGAAAT+TGG + chr4_1:63561533-63561552 None:intergenic 20.0%
!! TCAAATGTATAAATATGTGA+CGG - chr4_1:63561915-63561934 Msa0563240:three_prime_UTR 20.0%
!! AAAATATTTAGTTAGAAGGT+AGG - chr4_1:63561948-63561967 Msa0563240:three_prime_UTR 20.0%
!!! CTATATTTTATTGGACTTTT+TGG - chr4_1:63562315-63562334 Msa0563240:intron 20.0%
!!! AATACAAGTGATTCTTTTAA+TGG + chr4_1:63562481-63562500 None:intergenic 20.0%
!!! TTTATTGACTAAAATCAATG+TGG - chr4_1:63562657-63562676 Msa0563240:intron 20.0%
!!! TTATTGACTAAAATCAATGT+GGG - chr4_1:63562658-63562677 Msa0563240:intron 20.0%
!! TTATTTGGTTAAATCAATGT+GGG + chr4_1:63562782-63562801 None:intergenic 20.0%
!! TTTATTTGGTTAAATCAATG+TGG + chr4_1:63562783-63562802 None:intergenic 20.0%
!! ATACACAAAAGCTAAAATAT+AGG + chr4_1:63562879-63562898 None:intergenic 20.0%
!!! TATATTTTAGCTTTTGTGTA+TGG - chr4_1:63562878-63562897 Msa0563240:intron 20.0%
!!! AATTTTGTAAGAATTTGTTG+TGG - chr4_1:63564096-63564115 Msa0563240:intron 20.0%
!!! TGTTATTTTTTCTTGTGTAT+AGG - chr4_1:63564352-63564371 Msa0563240:CDS 20.0%
!!! GTTATTTTTTCTTGTGTATA+GGG - chr4_1:63564353-63564372 Msa0563240:CDS 20.0%
!! AAATGTAGAATTAAATTGTG+GGG - chr4_1:63564518-63564537 Msa0563240:intron 20.0%
!! GTTAAGAAAATATATGTAAG+TGG + chr4_1:63564636-63564655 None:intergenic 20.0%
!! ACATATTACATATATATCGA+AGG + chr4_1:63565378-63565397 None:intergenic 20.0%
!! ATATATATGAATGAAACAAG+AGG - chr4_1:63566183-63566202 Msa0563240:intron 20.0%
! GAAGTTATTAGGAAGTTATT+TGG + chr4_1:63559460-63559479 None:intergenic 25.0%
!! AAATAGTTAGTTATTGGTTG+TGG + chr4_1:63559525-63559544 None:intergenic 25.0%
! ATTTGAGAATGTCAATATCA+GGG + chr4_1:63560054-63560073 None:intergenic 25.0%
! AATTTGAGAATGTCAATATC+AGG + chr4_1:63560055-63560074 None:intergenic 25.0%
! GAATTGAAATTTAAACTGCA+AGG + chr4_1:63560144-63560163 None:intergenic 25.0%
!!! ATCATCCTTGACATTTTAAT+AGG - chr4_1:63560288-63560307 Msa0563240:intron 25.0%
! AATCAGATATAATTGCTTCA+AGG + chr4_1:63560379-63560398 None:intergenic 25.0%
! GAAAAATGTCTAACCAAAAT+TGG + chr4_1:63560486-63560505 None:intergenic 25.0%
! ACATTGGAAAAATGACATAA+TGG + chr4_1:63560656-63560675 None:intergenic 25.0%
!! TTCCAATGTAACAATTTTCT+AGG - chr4_1:63560667-63560686 Msa0563240:intron 25.0%
! AACACTTATTGGAAGATAAT+GGG + chr4_1:63560771-63560790 None:intergenic 25.0%
! TAACACTTATTGGAAGATAA+TGG + chr4_1:63560772-63560791 None:intergenic 25.0%
! ACTTCAGTTATAACACTTAT+TGG + chr4_1:63560782-63560801 None:intergenic 25.0%
!! TTTTCCTAATCCGAATATTA+AGG - chr4_1:63561103-63561122 Msa0563240:three_prime_UTR 25.0%
! AAGTACTCATCCTTAATATT+CGG + chr4_1:63561116-63561135 None:intergenic 25.0%
!! TTGGGCTTTTATATTTTGTT+CGG + chr4_1:63561625-63561644 None:intergenic 25.0%
!! CTACGTCATTTGTATATTTT+GGG + chr4_1:63561643-63561662 None:intergenic 25.0%
!! TCTACGTCATTTGTATATTT+TGG + chr4_1:63561644-63561663 None:intergenic 25.0%
! CATCAAAATGATTATGACAT+TGG - chr4_1:63561837-63561856 Msa0563240:three_prime_UTR 25.0%
! AAAATGATTATGACATTGGT+TGG - chr4_1:63561841-63561860 Msa0563240:three_prime_UTR 25.0%
! CAAATGTATAAATATGTGAC+GGG - chr4_1:63561916-63561935 Msa0563240:three_prime_UTR 25.0%
!! CCTTTCTTAAGTATATTTTG+GGG + chr4_1:63562143-63562162 None:intergenic 25.0%
!! CCCTTTCTTAAGTATATTTT+GGG + chr4_1:63562144-63562163 None:intergenic 25.0%
! CCCAAAATATACTTAAGAAA+GGG - chr4_1:63562141-63562160 Msa0563240:intron 25.0%
!! TCCCTTTCTTAAGTATATTT+TGG + chr4_1:63562145-63562164 None:intergenic 25.0%
! TTATGAGTTATTTAAGCCTT+TGG - chr4_1:63562516-63562535 Msa0563240:CDS 25.0%
! GGCAATAAAAAAATCAATGT+GGG + chr4_1:63562704-63562723 None:intergenic 25.0%
! AGGCAATAAAAAAATCAATG+TGG + chr4_1:63562705-63562724 None:intergenic 25.0%
! TTTATTGCCTAATATCAATG+TGG - chr4_1:63562715-63562734 Msa0563240:intron 25.0%
! TTATTGCCTAATATCAATGT+GGG - chr4_1:63562716-63562735 Msa0563240:intron 25.0%
! AAGACATATTCATAACTAAG+AGG + chr4_1:63562849-63562868 None:intergenic 25.0%
!! TGCTATTTGATCATATATCA+TGG - chr4_1:63563376-63563395 Msa0563240:intron 25.0%
!!! CCATGAGATTATTTCTTTTA+GGG + chr4_1:63563460-63563479 None:intergenic 25.0%
! CCTAAAAGAAATAATCTCAT+GGG - chr4_1:63563458-63563477 Msa0563240:intron 25.0%
!! AAATAATCTCATGGGTTATT+GGG - chr4_1:63563466-63563485 Msa0563240:intron 25.0%
! TAGTAAATAAAAATGCAGGT+AGG + chr4_1:63563529-63563548 None:intergenic 25.0%
! TATCACTTCATATCTTAGTA+CGG + chr4_1:63563561-63563580 None:intergenic 25.0%
!! AATGAAGTTTAGAGTAAAAG+TGG - chr4_1:63563880-63563899 Msa0563240:intron 25.0%
! TTGGATGTTATGAATTATGA+TGG - chr4_1:63564162-63564181 Msa0563240:intron 25.0%
! AATTATGATGGTTAATTTCC+CGG - chr4_1:63564174-63564193 Msa0563240:intron 25.0%
! TGCAAACCAAATGATAAATA+AGG - chr4_1:63564230-63564249 Msa0563240:intron 25.0%
! GCAAACCAAATGATAAATAA+GGG - chr4_1:63564231-63564250 Msa0563240:intron 25.0%
! TTTATGAGTAGTGCATATTT+GGG + chr4_1:63564282-63564301 None:intergenic 25.0%
!! TTTTATGAGTAGTGCATATT+TGG + chr4_1:63564283-63564302 None:intergenic 25.0%
!! CTACATTTTATTCCCTTTTT+TGG + chr4_1:63564506-63564525 None:intergenic 25.0%
! GTATAAGAACAAATAGGAAA+GGG - chr4_1:63564675-63564694 Msa0563240:intron 25.0%
! TATAAGAACAAATAGGAAAG+GGG - chr4_1:63564676-63564695 Msa0563240:intron 25.0%
! ATTAAAACAACATGAAACAG+AGG + chr4_1:63564886-63564905 None:intergenic 25.0%
! GATTTCAGTAAAATAATCCA+GGG + chr4_1:63564919-63564938 None:intergenic 25.0%
! TTTACTGAAATCCATATTGA+AGG - chr4_1:63564927-63564946 Msa0563240:intron 25.0%
! AAAGCACAACAAAAAAGAAA+GGG - chr4_1:63564975-63564994 Msa0563240:intron 25.0%
!!! GTATTAAGCTTGTTAATGAT+GGG + chr4_1:63565262-63565281 None:intergenic 25.0%
!!! CCTTAATTTGTACACATTTA+AGG + chr4_1:63565284-63565303 None:intergenic 25.0%
! CCTTAAATGTGTACAAATTA+AGG - chr4_1:63565281-63565300 Msa0563240:intron 25.0%
! AAGAAGAAAAAATTGTCATC+TGG + chr4_1:63565409-63565428 None:intergenic 25.0%
!! TTGTTTGACATTTAGTTCAA+GGG + chr4_1:63566000-63566019 None:intergenic 25.0%
!! ATTGTTTGACATTTAGTTCA+AGG + chr4_1:63566001-63566020 None:intergenic 25.0%
! TAAATGTCAAACAATTCTGA+GGG - chr4_1:63566006-63566025 Msa0563240:intron 25.0%
!! AATGATACTTTTATGAGAAG+TGG + chr4_1:63566088-63566107 None:intergenic 25.0%
! AGTATCATTTATTTGTTTGG+TGG - chr4_1:63566099-63566118 Msa0563240:intron 25.0%
!!! GATTTTCATTGATTCAGGAA+AGG - chr4_1:63559377-63559396 Msa0563240:three_prime_UTR 30.0%
AAACTCATCATGGTAGATTT+GGG + chr4_1:63559957-63559976 None:intergenic 30.0%
AAAACTCATCATGGTAGATT+TGG + chr4_1:63559958-63559977 None:intergenic 30.0%
! AATCTACCATGATGAGTTTT+TGG - chr4_1:63559958-63559977 Msa0563240:three_prime_UTR 30.0%
! GGTTTTTCTCAAGTATAACT+CGG - chr4_1:63560309-63560328 Msa0563240:intron 30.0%
ATTGACGCTATTGATGAAAA+TGG - chr4_1:63560396-63560415 Msa0563240:three_prime_UTR 30.0%
AATGGTTCAATTACAAGTGT+TGG - chr4_1:63560414-63560433 Msa0563240:three_prime_UTR 30.0%
! TTTTAGTGTCCAACCAATTT+TGG - chr4_1:63560470-63560489 Msa0563240:three_prime_UTR 30.0%
AATGTCTAACCAAAATTGGT+TGG + chr4_1:63560482-63560501 None:intergenic 30.0%
!! GAAAAGTATTGTCGTGTTAA+GGG + chr4_1:63560522-63560541 None:intergenic 30.0%
ACATAGGGAACAATAACATA+GGG + chr4_1:63560604-63560623 None:intergenic 30.0%
AACATAGGGAACAATAACAT+AGG + chr4_1:63560605-63560624 None:intergenic 30.0%
AGCCTAGAAAATTGTTACAT+TGG + chr4_1:63560672-63560691 None:intergenic 30.0%
TCATTATAAAAACCAGCCTT+CGG - chr4_1:63560718-63560737 Msa0563240:intron 30.0%
TCATCCTTAATATTCGGATT+AGG + chr4_1:63561110-63561129 None:intergenic 30.0%
! TTAAGGATGAGTACTTTTCT+TGG - chr4_1:63561120-63561139 Msa0563240:three_prime_UTR 30.0%
TAGAATTGAGAAACAACTCA+GGG + chr4_1:63561147-63561166 None:intergenic 30.0%
ATAGAATTGAGAAACAACTC+AGG + chr4_1:63561148-63561167 None:intergenic 30.0%
TTCCATTAAAGTTCTTGACA+GGG + chr4_1:63561193-63561212 None:intergenic 30.0%
TTAATGGAAGCCAACAATTA+TGG - chr4_1:63561204-63561223 Msa0563240:three_prime_UTR 30.0%
AGTTATGCAACCATAATTGT+TGG + chr4_1:63561217-63561236 None:intergenic 30.0%
!!! ACCACACGTTTTTTGATAAA+GGG + chr4_1:63561338-63561357 None:intergenic 30.0%
!!! AACCACACGTTTTTTGATAA+AGG + chr4_1:63561339-63561358 None:intergenic 30.0%
GTCAAGCATGCTAAATAATT+TGG - chr4_1:63561408-63561427 Msa0563240:three_prime_UTR 30.0%
GCATGCTAAATAATTTGGAA+AGG - chr4_1:63561413-63561432 Msa0563240:three_prime_UTR 30.0%
!!! GTAGATCTTTTGTTTTCTTG+AGG - chr4_1:63561659-63561678 Msa0563240:three_prime_UTR 30.0%
!!! AGTATATTTTGGGGTTTTTG+AGG + chr4_1:63562134-63562153 None:intergenic 30.0%
CCCCAAAATATACTTAAGAA+AGG - chr4_1:63562140-63562159 Msa0563240:intron 30.0%
TTAAGAAAGGGACATTATAG+AGG - chr4_1:63562153-63562172 Msa0563240:intron 30.0%
AATCATTATTTCGCCGTTAT+TGG + chr4_1:63562239-63562258 None:intergenic 30.0%
TTACAAGAGATTTAGTGTAG+TGG + chr4_1:63562291-63562310 None:intergenic 30.0%
TTTCACCCTAAAATTCTCAA+TGG - chr4_1:63562341-63562360 Msa0563240:intron 30.0%
! CTAAAACTCGCTCTTTTATT+TGG + chr4_1:63562797-63562816 None:intergenic 30.0%
!!! ATTTTTAGTAAGCTTCGACT+TGG - chr4_1:63562913-63562932 Msa0563240:intron 30.0%
TAACCTAAGTTGTCAATATC+GGG + chr4_1:63563197-63563216 None:intergenic 30.0%
CTAACCTAAGTTGTCAATAT+CGG + chr4_1:63563198-63563217 None:intergenic 30.0%
TATTGACAACTTAGGTTAGA+AGG - chr4_1:63563199-63563218 Msa0563240:CDS 30.0%
ATTCAGATGCTATATCCTTA+AGG - chr4_1:63563257-63563276 Msa0563240:intron 30.0%
TTCAGATGCTATATCCTTAA+GGG - chr4_1:63563258-63563277 Msa0563240:intron 30.0%
TACATCTTGCGAAATTTAGA+AGG + chr4_1:63563321-63563340 None:intergenic 30.0%
!!! ATTTCTTTTAGGGTCTGTTT+GGG + chr4_1:63563450-63563469 None:intergenic 30.0%
!!! TATTTCTTTTAGGGTCTGTT+TGG + chr4_1:63563451-63563470 None:intergenic 30.0%
CCCTAAAAGAAATAATCTCA+TGG - chr4_1:63563457-63563476 Msa0563240:intron 30.0%
!! CCCATGAGATTATTTCTTTT+AGG + chr4_1:63563461-63563480 None:intergenic 30.0%
! GAAATAATCTCATGGGTTAT+TGG - chr4_1:63563465-63563484 Msa0563240:intron 30.0%
ATGCTCATCAAGAACAAAAA+AGG + chr4_1:63563505-63563524 None:intergenic 30.0%
! TTATCTGAGATAACTGCTTA+CGG + chr4_1:63563700-63563719 None:intergenic 30.0%
ATAATGCAGAAAATCGCTAA+GGG - chr4_1:63563716-63563735 Msa0563240:intron 30.0%
!! AAATACTGAGATGGATTAAC+AGG + chr4_1:63563848-63563867 None:intergenic 30.0%
AGTGAACTGTGAAATTAACA+TGG - chr4_1:63563944-63563963 Msa0563240:intron 30.0%
GTGAACTGTGAAATTAACAT+GGG - chr4_1:63563945-63563964 Msa0563240:intron 30.0%
TGAACTGTGAAATTAACATG+GGG - chr4_1:63563946-63563965 Msa0563240:intron 30.0%
CTATACAACTTAACCAAACT+AGG + chr4_1:63564011-63564030 None:intergenic 30.0%
! GTTCACCCTTATTTATCATT+TGG + chr4_1:63564239-63564258 None:intergenic 30.0%
AAATAACAAAGTTGTTCTCG+TGG + chr4_1:63564340-63564359 None:intergenic 30.0%
TTGCGGTGAAATAATTTACA+CGG - chr4_1:63564387-63564406 Msa0563240:CDS 30.0%
AGTTAACAGCTTCCAAAAAA+GGG - chr4_1:63564491-63564510 Msa0563240:intron 30.0%
AAAATATATGTAAGTGGGAG+AGG + chr4_1:63564630-63564649 None:intergenic 30.0%
CTATTTGTTCTTATACCCAA+GGG + chr4_1:63564671-63564690 None:intergenic 30.0%
GGTATAAGAACAAATAGGAA+AGG - chr4_1:63564674-63564693 Msa0563240:intron 30.0%
GAAAGAAAGATGCATCATAA+TGG - chr4_1:63564767-63564786 Msa0563240:intron 30.0%
! AGAGGTACAGATAAATGTAA+TGG + chr4_1:63564868-63564887 None:intergenic 30.0%
GGATTTCAGTAAAATAATCC+AGG + chr4_1:63564920-63564939 None:intergenic 30.0%
CAAAGCACAACAAAAAAGAA+AGG - chr4_1:63564974-63564993 Msa0563240:intron 30.0%
GAATTGCAAATATTAGCTAC+TGG + chr4_1:63565052-63565071 None:intergenic 30.0%
ACAAACAAAGCATATTCAGT+TGG + chr4_1:63565074-63565093 None:intergenic 30.0%
GAACATACATTTCTCATGAA+TGG + chr4_1:63565217-63565236 None:intergenic 30.0%
TATAACCCATTTCATCTCAA+CGG + chr4_1:63565239-63565258 None:intergenic 30.0%
!! GGTATTAAGCTTGTTAATGA+TGG + chr4_1:63565263-63565282 None:intergenic 30.0%
ACAAATTAAGGTAACTCTCT+TGG - chr4_1:63565293-63565312 Msa0563240:intron 30.0%
!! TTTTTCTTCTTTATTTGGGG+TGG - chr4_1:63565418-63565437 Msa0563240:intron 30.0%
!! AAGTAGTTGGTAAAAGTTTC+CGG - chr4_1:63565694-63565713 Msa0563240:CDS 30.0%
CCATTCAACAAATATCAGAA+TGG + chr4_1:63565869-63565888 None:intergenic 30.0%
! CCATTCTGATATTTGTTGAA+TGG - chr4_1:63565866-63565885 Msa0563240:intron 30.0%
CTAAATGTCAAACAATTCTG+AGG - chr4_1:63566005-63566024 Msa0563240:intron 30.0%
AAATGTCAAACAATTCTGAG+GGG - chr4_1:63566007-63566026 Msa0563240:intron 30.0%
GTAACTATCTCAATCTATAC+GGG + chr4_1:63566129-63566148 None:intergenic 30.0%
GGTAACTATCTCAATCTATA+CGG + chr4_1:63566130-63566149 None:intergenic 30.0%
TAGAATATGTAACATTCCAG+CGG + chr4_1:63566246-63566265 None:intergenic 30.0%
!!! CTTGCGATTTTCATTGATTC+AGG - chr4_1:63559372-63559391 Msa0563240:three_prime_UTR 35.0%
TCTCAGAAGATAACTTCTTC+TGG - chr4_1:63559434-63559453 Msa0563240:three_prime_UTR 35.0%
! TTAGTTATTGGTTGTGGTTG+TGG + chr4_1:63559519-63559538 None:intergenic 35.0%
TCATTTGGAGGGTTTATCAA+AGG + chr4_1:63559638-63559657 None:intergenic 35.0%
TTGATAAACCCTCCAAATGA+CGG - chr4_1:63559638-63559657 Msa0563240:three_prime_UTR 35.0%
TAACGTCCAAAAACTCATCA+TGG + chr4_1:63559967-63559986 None:intergenic 35.0%
AGAGAAGATCTCTGAATTTC+AGG + chr4_1:63559995-63560014 None:intergenic 35.0%
TGTGCTTTACTTGAAGTCAT+TGG - chr4_1:63560024-63560043 Msa0563240:three_prime_UTR 35.0%
ATTTAAACTGCAAGGAGCAA+AGG + chr4_1:63560136-63560155 None:intergenic 35.0%
!!! CTTTCTTCATTTTTTGGGTG+CGG - chr4_1:63560198-63560217 Msa0563240:intron 35.0%
!!! TTTCTTCATTTTTTGGGTGC+GGG - chr4_1:63560199-63560218 Msa0563240:intron 35.0%
!! TACAAGTGTTGGACGAAAAA+TGG - chr4_1:63560425-63560444 Msa0563240:three_prime_UTR 35.0%
!! GGAAAAGTATTGTCGTGTTA+AGG + chr4_1:63560523-63560542 None:intergenic 35.0%
! ATATACCACATGAGTGTTGT+TGG - chr4_1:63560556-63560575 Msa0563240:intron 35.0%
! ATTTTCCAACAACACTCATG+TGG + chr4_1:63560564-63560583 None:intergenic 35.0%
!!! ACAATTTTCTAGGCTAGTCT+AGG - chr4_1:63560677-63560696 Msa0563240:intron 35.0%
CACACACATGCAATATACAA+TGG - chr4_1:63560890-63560909 Msa0563240:three_prime_UTR 35.0%
ATGGAGCATAGCAAGAAAAT+CGG - chr4_1:63560909-63560928 Msa0563240:three_prime_UTR 35.0%
! ATTCGGATTAGGAAAATGCA+TGG + chr4_1:63561099-63561118 None:intergenic 35.0%
ATTAAAGTTCTTGACAGGGA+TGG + chr4_1:63561189-63561208 None:intergenic 35.0%
ATCCCTGTCAAGAACTTTAA+TGG - chr4_1:63561188-63561207 Msa0563240:three_prime_UTR 35.0%
CTTCCATTAAAGTTCTTGAC+AGG + chr4_1:63561194-63561213 None:intergenic 35.0%
CAATTATGGTTGCATAACTG+AGG - chr4_1:63561218-63561237 Msa0563240:three_prime_UTR 35.0%
TGCAGATTCAGATGATAACA+TGG + chr4_1:63561259-63561278 None:intergenic 35.0%
TCCCTTTATCAAAAAACGTG+TGG - chr4_1:63561334-63561353 Msa0563240:three_prime_UTR 35.0%
TAACATCATTCACCTTAGAG+GGG + chr4_1:63561559-63561578 None:intergenic 35.0%
CTAACATCATTCACCTTAGA+GGG + chr4_1:63561560-63561579 None:intergenic 35.0%
AGGTTTGTACGTCTATACAT+TGG - chr4_1:63561679-63561698 Msa0563240:three_prime_UTR 35.0%
ATATCTGCAGTAATTGGATG+TGG + chr4_1:63561806-63561825 None:intergenic 35.0%
AGAAATGCCAGAATGTATGT+CGG + chr4_1:63561891-63561910 None:intergenic 35.0%
! TGCTGCCATTGAGAATTTTA+GGG + chr4_1:63562349-63562368 None:intergenic 35.0%
! TTGCTGCCATTGAGAATTTT+AGG + chr4_1:63562350-63562369 None:intergenic 35.0%
ATTCTCAATGGCAGCAAAAT+AGG - chr4_1:63562353-63562372 Msa0563240:intron 35.0%
TTCTCAATGGCAGCAAAATA+GGG - chr4_1:63562354-63562373 Msa0563240:intron 35.0%
GAAAGGAGTTGAATCTGTAT+CGG + chr4_1:63562409-63562428 None:intergenic 35.0%
TGAGTTATTTAAGCCTTTGG+AGG - chr4_1:63562519-63562538 Msa0563240:CDS 35.0%
AATATTCAAACCCAACGTGA+AGG + chr4_1:63562557-63562576 None:intergenic 35.0%
TTCACGTTGGGTTTGAATAT+TGG - chr4_1:63562556-63562575 Msa0563240:CDS 35.0%
ATATTGGCAGCAATGAACTT+TGG - chr4_1:63562572-63562591 Msa0563240:CDS 35.0%
!! ATTCCGCTATTCTAGTTTCA+AGG - chr4_1:63563161-63563180 Msa0563240:CDS 35.0%
TATATCCTTAAGGGTCTGTT+TGG - chr4_1:63563267-63563286 Msa0563240:intron 35.0%
GATAATGCAGAAAATCGCTA+AGG - chr4_1:63563715-63563734 Msa0563240:intron 35.0%
ATGGTAGTAGCAAAAAGAAC+CGG - chr4_1:63563796-63563815 Msa0563240:CDS 35.0%
!!! AAGAACCGGCATCTTATTTT+TGG - chr4_1:63563810-63563829 Msa0563240:CDS 35.0%
ATGTGCCAAAAATAAGATGC+CGG + chr4_1:63563818-63563837 None:intergenic 35.0%
TCACAGTTCACTTCAATTCT+TGG + chr4_1:63563936-63563955 None:intergenic 35.0%
ATCTAACACAAGAACGATGA+AGG + chr4_1:63563984-63564003 None:intergenic 35.0%
GTGTTAGATATGTCCTAGTT+TGG - chr4_1:63563995-63564014 Msa0563240:intron 35.0%
ATAGGGTTTAAAAGCTCTTG+CGG - chr4_1:63564370-63564389 Msa0563240:CDS 35.0%
GAGTTAACAGCTTCCAAAAA+AGG - chr4_1:63564490-63564509 Msa0563240:intron 35.0%
AACATGTACGATAACTAGCT+GGG + chr4_1:63564603-63564622 None:intergenic 35.0%
TAACATGTACGATAACTAGC+TGG + chr4_1:63564604-63564623 None:intergenic 35.0%
TAACTTTGCAATAGAACCCT+TGG - chr4_1:63564652-63564671 Msa0563240:intron 35.0%
AACTTTGCAATAGAACCCTT+GGG - chr4_1:63564653-63564672 Msa0563240:intron 35.0%
CCTATTTGTTCTTATACCCA+AGG + chr4_1:63564672-63564691 None:intergenic 35.0%
CCTTGGGTATAAGAACAAAT+AGG - chr4_1:63564669-63564688 Msa0563240:intron 35.0%
TCAAATTTCGATAATCCCTC+CGG + chr4_1:63564709-63564728 None:intergenic 35.0%
GGATTATCGAAATTTGAGGA+AGG - chr4_1:63564712-63564731 Msa0563240:intron 35.0%
CTTTAATTACCTGGACTACT+TGG + chr4_1:63564817-63564836 None:intergenic 35.0%
! TTTTAATATAATACCCGCCC+TGG - chr4_1:63564899-63564918 Msa0563240:intron 35.0%
TTCAGTAAAATAATCCAGGG+CGG + chr4_1:63564916-63564935 None:intergenic 35.0%
TGAAATCCATATTGAAGGAG+TGG - chr4_1:63564932-63564951 Msa0563240:intron 35.0%
TTTGTGTTGCATTTCAGCAA+TGG + chr4_1:63564958-63564977 None:intergenic 35.0%
ACTTTCACAATTTCACAGCA+AGG + chr4_1:63565023-63565042 None:intergenic 35.0%
! CATTGAGCTCTGATGAATTT+GGG - chr4_1:63565143-63565162 Msa0563240:intron 35.0%
TCATGGTATACAACATAGTC+TGG + chr4_1:63565175-63565194 None:intergenic 35.0%
TATGTTCCGTTGAGATGAAA+TGG - chr4_1:63565230-63565249 Msa0563240:CDS 35.0%
ATGTTCCGTTGAGATGAAAT+GGG - chr4_1:63565231-63565250 Msa0563240:CDS 35.0%
TCTAATTCCTTTGTCTGTAG+TGG - chr4_1:63565473-63565492 Msa0563240:intron 35.0%
ACATTCTTCTTGGGCAAATT+TGG + chr4_1:63565542-63565561 None:intergenic 35.0%
ATGTGGAAAACAGAAATGTC+AGG + chr4_1:63565739-63565758 None:intergenic 35.0%
TGTGCTAAATCTTCTGATGT+TGG + chr4_1:63565822-63565841 None:intergenic 35.0%
GTAAATTTCCATGACAAGTG+GGG + chr4_1:63565920-63565939 None:intergenic 35.0%
GGTAAATTTCCATGACAAGT+GGG + chr4_1:63565921-63565940 None:intergenic 35.0%
AATTTACCGAGAGGAGAAAA+AGG - chr4_1:63565933-63565952 Msa0563240:intron 35.0%
TCTCAATCTGATGTCTGTTA+TGG + chr4_1:63566049-63566068 None:intergenic 35.0%
AGAATATGTAACATTCCAGC+GGG + chr4_1:63566245-63566264 None:intergenic 35.0%
TGATAAACCCTCCAAATGAC+GGG - chr4_1:63559639-63559658 Msa0563240:three_prime_UTR 40.0%
AGATTTGGGAAGGATATAGG+CGG + chr4_1:63559943-63559962 None:intergenic 40.0%
GGTAGATTTGGGAAGGATAT+AGG + chr4_1:63559946-63559965 None:intergenic 40.0%
TCATCATGGTAGATTTGGGA+AGG + chr4_1:63559953-63559972 None:intergenic 40.0%
ATTCAGAGATCTTCTCTTGC+CGG - chr4_1:63559998-63560017 Msa0563240:three_prime_UTR 40.0%
TGAGAATGTCAATATCAGGG+AGG + chr4_1:63560051-63560070 None:intergenic 40.0%
! TCTTACATGACGGAGAATCA+AGG + chr4_1:63560084-63560103 None:intergenic 40.0%
! TTGCTTCAAGGCATCTTGTA+AGG + chr4_1:63560367-63560386 None:intergenic 40.0%
! ATGGAAGTGTGTTTCTTTCC+AGG - chr4_1:63561019-63561038 Msa0563240:three_prime_UTR 40.0%
AAGTCTCGTCTACTCTTGAA+AGG - chr4_1:63561482-63561501 Msa0563240:three_prime_UTR 40.0%
TCGTCTACTCTTGAAAGGAA+AGG - chr4_1:63561487-63561506 Msa0563240:three_prime_UTR 40.0%
GCTAACATCATTCACCTTAG+AGG + chr4_1:63561561-63561580 None:intergenic 40.0%
TGTACGTCTATACATTGGCA+AGG - chr4_1:63561684-63561703 Msa0563240:three_prime_UTR 40.0%
GCAGCAAAACTGAGAAAAAG+AGG - chr4_1:63561736-63561755 Msa0563240:three_prime_UTR 40.0%
CCATCAGGAAGGTTAGATAT+TGG + chr4_1:63561768-63561787 None:intergenic 40.0%
CCAATATCTAACCTTCCTGA+TGG - chr4_1:63561765-63561784 Msa0563240:three_prime_UTR 40.0%
GCTCGAATATCTGCAGTAAT+TGG + chr4_1:63561812-63561831 None:intergenic 40.0%
! ATTGGTTGGTGCAAAGATCA+TGG - chr4_1:63561855-63561874 Msa0563240:three_prime_UTR 40.0%
AGAAGGTAGGTTGTCAAACT+TGG - chr4_1:63561961-63561980 Msa0563240:intron 40.0%
ACTCAAAACTGCAGTGCAAT+GGG + chr4_1:63562200-63562219 None:intergenic 40.0%
TACTCAAAACTGCAGTGCAA+TGG + chr4_1:63562201-63562220 None:intergenic 40.0%
CATTATTTCGCCGTTATTGG+TGG + chr4_1:63562236-63562255 None:intergenic 40.0%
AGATTTAGTGTAGTGGTAGC+TGG + chr4_1:63562284-63562303 None:intergenic 40.0%
! TAATGGACCCACTATATCCA+AGG + chr4_1:63562464-63562483 None:intergenic 40.0%
!! TAGAGAGTGCCAAAAAGAGA+GGG + chr4_1:63562626-63562645 None:intergenic 40.0%
!! TTAGAGAGTGCCAAAAAGAG+AGG + chr4_1:63562627-63562646 None:intergenic 40.0%
GTAGGACCCACATTGATATT+AGG + chr4_1:63562725-63562744 None:intergenic 40.0%
!! GGGTCCAACATTTTGGAAAT+GGG + chr4_1:63562762-63562781 None:intergenic 40.0%
!! TGGGTCCAACATTTTGGAAA+TGG + chr4_1:63562763-63562782 None:intergenic 40.0%
! TCAATGTGGGTCCAACATTT+TGG + chr4_1:63562769-63562788 None:intergenic 40.0%
!! TTTAGTAAGCTTCGACTTGG+CGG - chr4_1:63562916-63562935 Msa0563240:intron 40.0%
!! ATGCAGTCAATGGTGGATAA+CGG + chr4_1:63562948-63562967 None:intergenic 40.0%
! AGTGAGTCCATGGTAGTTTT+TGG + chr4_1:63563037-63563056 None:intergenic 40.0%
CTACCCGATATTGACAACTT+AGG - chr4_1:63563191-63563210 Msa0563240:CDS 40.0%
GCGTGAATATACATTCGACA+AGG + chr4_1:63563234-63563253 None:intergenic 40.0%
!! TTCTGGGATCAACTGAATGA+AGG - chr4_1:63563646-63563665 Msa0563240:CDS 40.0%
CTTCCTCCCGTTAATGATAT+CGG + chr4_1:63564202-63564221 None:intergenic 40.0%
TAACAAAGTTGTTCTCGTGG+TGG + chr4_1:63564337-63564356 None:intergenic 40.0%
GGAGGGATTATCGAAATTTG+AGG - chr4_1:63564708-63564727 Msa0563240:intron 40.0%
TCATAATGGTTATCGAACCC+TGG - chr4_1:63564781-63564800 Msa0563240:intron 40.0%
CATAATGGTTATCGAACCCT+GGG - chr4_1:63564782-63564801 Msa0563240:intron 40.0%
TCAGTAAAATAATCCAGGGC+GGG + chr4_1:63564915-63564934 None:intergenic 40.0%
ACAGAAGATTCAGGTAAGTC+AGG + chr4_1:63565102-63565121 None:intergenic 40.0%
TTACCTGAATCTTCTGTACC+AGG - chr4_1:63565105-63565124 Msa0563240:intron 40.0%
! GCATTGAGCTCTGATGAATT+TGG - chr4_1:63565142-63565161 Msa0563240:intron 40.0%
ACATTTCTCATGAATGGTCG+TGG + chr4_1:63565211-63565230 None:intergenic 40.0%
CTCTTGGCATTAGAAACTTC+TGG - chr4_1:63565309-63565328 Msa0563240:intron 40.0%
CGAAGGAACATGAAGTGATT+TGG + chr4_1:63565361-63565380 None:intergenic 40.0%
! TCTTCTTTATTTGGGGTGGA+AGG - chr4_1:63565422-63565441 Msa0563240:intron 40.0%
AATTCCTTTGTCTGTAGTGG+TGG - chr4_1:63565476-63565495 Msa0563240:intron 40.0%
TTTGCCCAAGAAGAATGTTG+AGG - chr4_1:63565544-63565563 Msa0563240:CDS 40.0%
GCAACCTCAACATTCTTCTT+GGG + chr4_1:63565551-63565570 None:intergenic 40.0%
AGCAACCTCAACATTCTTCT+TGG + chr4_1:63565552-63565571 None:intergenic 40.0%
AGTGAGAACTGTTATACCTG+TGG - chr4_1:63565642-63565661 Msa0563240:CDS 40.0%
!! ATGTTAGTGTTGGCTTGTTG+AGG - chr4_1:63565667-63565686 Msa0563240:CDS 40.0%
!! TGTTAGTGTTGGCTTGTTGA+GGG - chr4_1:63565668-63565687 Msa0563240:CDS 40.0%
TTGTTGAGGGACAAAGTAGT+TGG - chr4_1:63565681-63565700 Msa0563240:CDS 40.0%
TGGTAAAAGTTTCCGGAGAA+TGG - chr4_1:63565701-63565720 Msa0563240:CDS 40.0%
GGTAAAAGTTTCCGGAGAAT+GGG - chr4_1:63565702-63565721 Msa0563240:CDS 40.0%
GTAAAAGTTTCCGGAGAATG+GGG - chr4_1:63565703-63565722 Msa0563240:CDS 40.0%
TAATTTGACTCCCCATTCTC+CGG + chr4_1:63565716-63565735 None:intergenic 40.0%
CACATAAAAGCAACGACATG+TGG + chr4_1:63565756-63565775 None:intergenic 40.0%
CGGTAAATTTCCATGACAAG+TGG + chr4_1:63565922-63565941 None:intergenic 40.0%
TGTCATGGAAATTTACCGAG+AGG - chr4_1:63565924-63565943 Msa0563240:intron 40.0%
! CTTTGTCCTTTTTCTCCTCT+CGG + chr4_1:63565942-63565961 None:intergenic 40.0%
AGAGGAGAAAAAGGACAAAG+TGG - chr4_1:63565942-63565961 Msa0563240:intron 40.0%
GAGAAAAAGGACAAAGTGGA+AGG - chr4_1:63565946-63565965 Msa0563240:intron 40.0%
! CTTTTATGAGAAGTGGCACT+CGG + chr4_1:63566081-63566100 None:intergenic 40.0%
CTTCAGATACAAACTCAGCT+AGG + chr4_1:63566151-63566170 None:intergenic 40.0%
AGAAGGGTAAACCCGTCATT+TGG + chr4_1:63559653-63559672 None:intergenic 45.0%
AGCGCACAGACTAAAGAGAA+GGG + chr4_1:63559669-63559688 None:intergenic 45.0%
TAGCGCACAGACTAAAGAGA+AGG + chr4_1:63559670-63559689 None:intergenic 45.0%
CTTCAAGTAAAGCACACTGC+CGG + chr4_1:63560020-63560039 None:intergenic 45.0%
GGATTCAGCTGCAGAAAACA+TGG + chr4_1:63560346-63560365 None:intergenic 45.0%
! AGTGTTGGACGAAAAATGGC+TGG - chr4_1:63560429-63560448 Msa0563240:three_prime_UTR 45.0%
! ATGTCTTATTCCTCAGCCGA+AGG + chr4_1:63560737-63560756 None:intergenic 45.0%
AATCAAGACCAGCGGAAAGA+CGG + chr4_1:63560955-63560974 None:intergenic 45.0%
! AAGGCTCTAATCAAGACCAG+CGG + chr4_1:63560963-63560982 None:intergenic 45.0%
ATAACTTTCCTCATCGAGCC+TGG + chr4_1:63561040-63561059 None:intergenic 45.0%
!! CTTGACAGGGATGGTTCTAA+CGG + chr4_1:63561180-63561199 None:intergenic 45.0%
TCTGAATCTGCATTGCTACC+AGG - chr4_1:63561267-63561286 Msa0563240:three_prime_UTR 45.0%
CTGAATCTGCATTGCTACCA+GGG - chr4_1:63561268-63561287 Msa0563240:three_prime_UTR 45.0%
CAAGAGTAGACGAGACTTGA+GGG + chr4_1:63561480-63561499 None:intergenic 45.0%
TCAAGAGTAGACGAGACTTG+AGG + chr4_1:63561481-63561500 None:intergenic 45.0%
! ACTCTTGAAAGGAAAGGTGC+AGG - chr4_1:63561493-63561512 Msa0563240:three_prime_UTR 45.0%
! AAGGAAAGGTGCAGGTTACT+TGG - chr4_1:63561501-63561520 Msa0563240:three_prime_UTR 45.0%
AAGGTGCAGGTTACTTGGTT+TGG - chr4_1:63561506-63561525 Msa0563240:three_prime_UTR 45.0%
TCATGCTAACTTCCCCTCTA+AGG - chr4_1:63561544-63561563 Msa0563240:three_prime_UTR 45.0%
ATACATTGGCAAGGACTGAG+AGG - chr4_1:63561693-63561712 Msa0563240:three_prime_UTR 45.0%
TCTAACCTTCCTGATGGTTC+TGG - chr4_1:63561771-63561790 Msa0563240:three_prime_UTR 45.0%
TACTGCAGATATTCGAGCGT+TGG - chr4_1:63561814-63561833 Msa0563240:three_prime_UTR 45.0%
! TCACTATTGGCTGCGATTTC+TGG + chr4_1:63562082-63562101 None:intergenic 45.0%
GCCAATAGTGATGCTGCATA+TGG - chr4_1:63562091-63562110 Msa0563240:intron 45.0%
GCCATATGCAGCATCACTAT+TGG + chr4_1:63562095-63562114 None:intergenic 45.0%
CTCAAAACTGCAGTGCAATG+GGG + chr4_1:63562199-63562218 None:intergenic 45.0%
!!! TGCACTGCAGTTTTGAGTAG+TGG - chr4_1:63562202-63562221 Msa0563240:intron 45.0%
TAGTGTAGTGGTAGCTGGAT+CGG + chr4_1:63562279-63562298 None:intergenic 45.0%
! CAGCAAAATAGGGCACTCTT+GGG - chr4_1:63562364-63562383 Msa0563240:intron 45.0%
AGGAGTTGAATCTGTATCGG+AGG + chr4_1:63562406-63562425 None:intergenic 45.0%
TAAAACTCGTGCCTTCACGT+TGG - chr4_1:63562543-63562562 Msa0563240:CDS 45.0%
AAAACTCGTGCCTTCACGTT+GGG - chr4_1:63562544-63562563 Msa0563240:CDS 45.0%
! TGCCAAGAACCCTCTCTTTT+TGG - chr4_1:63562614-63562633 Msa0563240:CDS 45.0%
TGCCAAAAAGAGAGGGTTCT+TGG + chr4_1:63562619-63562638 None:intergenic 45.0%
AATGTGGGTCTCACACAAAG+TGG + chr4_1:63562689-63562708 None:intergenic 45.0%
TGGGTCCTACTACTTTGTGT+GGG - chr4_1:63562735-63562754 Msa0563240:intron 45.0%
!! TGCAGTCAATGGTGGATAAC+GGG + chr4_1:63562947-63562966 None:intergenic 45.0%
CAGTGTTATGCAGTCAATGG+TGG + chr4_1:63562955-63562974 None:intergenic 45.0%
CTGCAGTGTTATGCAGTCAA+TGG + chr4_1:63562958-63562977 None:intergenic 45.0%
TGCATAACACTGCAGAGACA+GGG - chr4_1:63562963-63562982 Msa0563240:intron 45.0%
CGAGAGTCCAAAAACTACCA+TGG - chr4_1:63563027-63563046 Msa0563240:intron 45.0%
TAGAGCTTCAAGTGAGTCCA+TGG + chr4_1:63563047-63563066 None:intergenic 45.0%
TCTATCACACATTGCAGCTC+AGG + chr4_1:63563139-63563158 None:intergenic 45.0%
CGGCCTTGAAACTAGAATAG+CGG + chr4_1:63563167-63563186 None:intergenic 45.0%
TGTCAATATCGGGTAGCAGT+CGG + chr4_1:63563187-63563206 None:intergenic 45.0%
TCCTTAAGGGTCTGTTTGGA+AGG - chr4_1:63563271-63563290 Msa0563240:intron 45.0%
CCTTAAGGGTCTGTTTGGAA+GGG - chr4_1:63563272-63563291 Msa0563240:intron 45.0%
CTTAAGGGTCTGTTTGGAAG+GGG - chr4_1:63563273-63563292 Msa0563240:intron 45.0%
TTAAGGGTCTGTTTGGAAGG+GGG - chr4_1:63563274-63563293 Msa0563240:intron 45.0%
TCTGTTTGGAAGGGGGATAT+TGG - chr4_1:63563281-63563300 Msa0563240:intron 45.0%
CTGTTTGGAAGGGGGATATT+GGG - chr4_1:63563282-63563301 Msa0563240:intron 45.0%
TGTTTGGAAGGGGGATATTG+GGG - chr4_1:63563283-63563302 Msa0563240:intron 45.0%
!!! TTTTAGGGTCTGTTTGGGAG+GGG + chr4_1:63563445-63563464 None:intergenic 45.0%
!!! CTTTTAGGGTCTGTTTGGGA+GGG + chr4_1:63563446-63563465 None:intergenic 45.0%
!!! TCTTTTAGGGTCTGTTTGGG+AGG + chr4_1:63563447-63563466 None:intergenic 45.0%
! ATCAACTGAATGAAGGTGCG+AGG - chr4_1:63563653-63563672 Msa0563240:CDS 45.0%
TAACTGCTTACGGACATCTC+TGG + chr4_1:63563690-63563709 None:intergenic 45.0%
ACTACCATTTCCACTGCATC+TGG + chr4_1:63563784-63563803 None:intergenic 45.0%
ATAGGAAAGGGGAAGAGTTC+CGG - chr4_1:63564687-63564706 Msa0563240:intron 45.0%
TTTGAGGAAGGCTCTATGTG+TGG - chr4_1:63564724-63564743 Msa0563240:intron 45.0%
TTGAGGAAGGCTCTATGTGT+GGG - chr4_1:63564725-63564744 Msa0563240:intron 45.0%
CAATGGCCACTCCTTCAATA+TGG + chr4_1:63564941-63564960 None:intergenic 45.0%
AAAGGGCTTCTATCACCGAA+TGG - chr4_1:63564992-63565011 Msa0563240:intron 45.0%
GTACCTGGTACAGAAGATTC+AGG + chr4_1:63565111-63565130 None:intergenic 45.0%
!! ATGCAGATGATGGATGTACC+TGG + chr4_1:63565126-63565145 None:intergenic 45.0%
TCAGAGCTCAATGCAGATGA+TGG + chr4_1:63565136-63565155 None:intergenic 45.0%
!! GTGGTGTTGCAATTAGCTCA+TGG + chr4_1:63565192-63565211 None:intergenic 45.0%
! TCTTTATTTGGGGTGGAAGG+TGG - chr4_1:63565425-63565444 Msa0563240:intron 45.0%
! CTTTATTTGGGGTGGAAGGT+GGG - chr4_1:63565426-63565445 Msa0563240:intron 45.0%
! TTTATTTGGGGTGGAAGGTG+GGG - chr4_1:63565427-63565446 Msa0563240:intron 45.0%
AGCAAGAAATCGTTCTCTGG+CGG + chr4_1:63565609-63565628 None:intergenic 45.0%
ACGAGCAAGAAATCGTTCTC+TGG + chr4_1:63565612-63565631 None:intergenic 45.0%
ACCTGTGGAGATGTTAGTGT+TGG - chr4_1:63565657-63565676 Msa0563240:CDS 45.0%
ATGGTACAATGCTCAGTCTC+AGG + chr4_1:63565850-63565869 None:intergenic 45.0%
GACAAGTGGGGATAAGCAAA+AGG + chr4_1:63565908-63565927 None:intergenic 45.0%
TTGCTTATCCCCACTTGTCA+TGG - chr4_1:63565909-63565928 Msa0563240:intron 45.0%
TCTCATGTTTATTCACCCGC+TGG - chr4_1:63566227-63566246 Msa0563240:intron 45.0%
GGGTAAACCCGTCATTTGGA+GGG + chr4_1:63559649-63559668 None:intergenic 50.0%
AGGGTAAACCCGTCATTTGG+AGG + chr4_1:63559650-63559669 None:intergenic 50.0%
AGTCTGTGCGCTATCAAGTG+TGG - chr4_1:63559677-63559696 Msa0563240:three_prime_UTR 50.0%
GCAGAGTGCAAGCTAATCAG+CGG - chr4_1:63559879-63559898 Msa0563240:three_prime_UTR 50.0%
CAGAGTGCAAGCTAATCAGC+GGG - chr4_1:63559880-63559899 Msa0563240:three_prime_UTR 50.0%
TATAGGCGGTAGCATTTCCC+TGG + chr4_1:63559929-63559948 None:intergenic 50.0%
!!! TCATTTTTTGGGTGCGGGTG+TGG - chr4_1:63560204-63560223 Msa0563240:intron 50.0%
!!! CATTTTTTGGGTGCGGGTGT+GGG - chr4_1:63560205-63560224 Msa0563240:intron 50.0%
TAAAAACCAGCCTTCGGCTG+AGG - chr4_1:63560724-63560743 Msa0563240:intron 50.0%
ATCAAGACCAGCGGAAAGAC+GGG + chr4_1:63560954-63560973 None:intergenic 50.0%
GTTTCTTTCCAGGCTCGATG+AGG - chr4_1:63561029-63561048 Msa0563240:three_prime_UTR 50.0%
!! CTTCCTGATGGTTCTGGCTT+GGG - chr4_1:63561777-63561796 Msa0563240:three_prime_UTR 50.0%
! GTGCAAAGATCATGGCTTGC+AGG - chr4_1:63561863-63561882 Msa0563240:three_prime_UTR 50.0%
!! GCAGGTACCGACATACATTC+TGG - chr4_1:63561881-63561900 Msa0563240:three_prime_UTR 50.0%
CTCTGTTGTGCATAGCAGTG+CGG - chr4_1:63561984-63562003 Msa0563240:intron 50.0%
!! CTCCAACCCTGGTGTCATAT+TGG - chr4_1:63562027-63562046 Msa0563240:intron 50.0%
CTCCAATATGACACCAGGGT+TGG + chr4_1:63562032-63562051 None:intergenic 50.0%
!! CAACCCTGGTGTCATATTGG+AGG - chr4_1:63562030-63562049 Msa0563240:intron 50.0%
GCACCTCCAATATGACACCA+GGG + chr4_1:63562036-63562055 None:intergenic 50.0%
TGCACCTCCAATATGACACC+AGG + chr4_1:63562037-63562056 None:intergenic 50.0%
! TCATATTGGAGGTGCAGCCA+TGG - chr4_1:63562041-63562060 Msa0563240:intron 50.0%
AGCCATGGCGGTCACTATTA+CGG - chr4_1:63562056-63562075 Msa0563240:intron 50.0%
ATGCTGCATATGGCTTGACC+AGG - chr4_1:63562101-63562120 Msa0563240:intron 50.0%
TGGTAGCTGGATCGGCTATT+CGG + chr4_1:63562271-63562290 None:intergenic 50.0%
! GCAGCAAAATAGGGCACTCT+TGG - chr4_1:63562363-63562382 Msa0563240:intron 50.0%
AAGCAGCACAAGGTAGGGAA+AGG + chr4_1:63562426-63562445 None:intergenic 50.0%
AGACGAAGCAGCACAAGGTA+GGG + chr4_1:63562431-63562450 None:intergenic 50.0%
ACTATATCCAAGGCGAGGAG+GGG + chr4_1:63562454-63562473 None:intergenic 50.0%
CACTATATCCAAGGCGAGGA+GGG + chr4_1:63562455-63562474 None:intergenic 50.0%
CTCCTCGCCTTGGATATAGT+GGG - chr4_1:63562454-63562473 Msa0563240:CDS 50.0%
!! GCACGAGTTTTAGCCTCCAA+AGG + chr4_1:63562535-63562554 None:intergenic 50.0%
GTGGGTCCTACTACTTTGTG+TGG - chr4_1:63562734-63562753 Msa0563240:intron 50.0%
GGGTCCTACTACTTTGTGTG+GGG - chr4_1:63562736-63562755 Msa0563240:intron 50.0%
GGGGCCCATTTCCAAAATGT+TGG - chr4_1:63562755-63562774 Msa0563240:intron 50.0%
CTGCATAACACTGCAGAGAC+AGG - chr4_1:63562962-63562981 Msa0563240:intron 50.0%
GGCTGCAAAGGTGGTTCAAA+TGG + chr4_1:63563096-63563115 None:intergenic 50.0%
CCCTTCCAAACAGACCCTTA+AGG + chr4_1:63563275-63563294 None:intergenic 50.0%
! TTTAGGGTCTGTTTGGGAGG+GGG + chr4_1:63563444-63563463 None:intergenic 50.0%
TAATGCGCTTCCAGATGCAG+TGG - chr4_1:63563771-63563790 Msa0563240:CDS 50.0%
GCTTCCAGATGCAGTGGAAA+TGG - chr4_1:63563777-63563796 Msa0563240:CDS 50.0%
! CCGTTAATGATATCGGTGCC+GGG + chr4_1:63564195-63564214 None:intergenic 50.0%
!! CCCGGCACCGATATCATTAA+CGG - chr4_1:63564192-63564211 Msa0563240:intron 50.0%
CCCGTTAATGATATCGGTGC+CGG + chr4_1:63564196-63564215 None:intergenic 50.0%
!! CCGGCACCGATATCATTAAC+GGG - chr4_1:63564193-63564212 Msa0563240:intron 50.0%
! GCACCGATATCATTAACGGG+AGG - chr4_1:63564196-63564215 Msa0563240:intron 50.0%
TATCGAACCCTGGGTTTCCA+AGG - chr4_1:63564791-63564810 Msa0563240:intron 50.0%
!! TACTTGGCCTTGGAAACCCA+GGG + chr4_1:63564801-63564820 None:intergenic 50.0%
TTTCCAAGGCCAAGTAGTCC+AGG - chr4_1:63564805-63564824 Msa0563240:intron 50.0%
TTACCTGGACTACTTGGCCT+TGG + chr4_1:63564811-63564830 None:intergenic 50.0%
CACAGCAAGGCTTCACCATT+CGG + chr4_1:63565010-63565029 None:intergenic 50.0%
TCCTTTGTCTGTAGTGGTGG+TGG - chr4_1:63565479-63565498 Msa0563240:intron 50.0%
TGGTGGCATGGATCATGTTG+TGG - chr4_1:63565496-63565515 Msa0563240:intron 50.0%
TGGCATGGATCATGTTGTGG+AGG - chr4_1:63565499-63565518 Msa0563240:intron 50.0%
GCCAACACTAACATCTCCAC+AGG + chr4_1:63565661-63565680 None:intergenic 50.0%
CTTATTCCTCAGCCGAAGGC+TGG + chr4_1:63560733-63560752 None:intergenic 55.0%
AAAGACGGGCACAGTGGTGT+CGG + chr4_1:63560940-63560959 None:intergenic 55.0%
GTGAACACTAACCTCTGCCC+TGG + chr4_1:63561288-63561307 None:intergenic 55.0%
CCAAGCCAGAACCATCAGGA+AGG + chr4_1:63561779-63561798 None:intergenic 55.0%
!! CCTTCCTGATGGTTCTGGCT+TGG - chr4_1:63561776-63561795 Msa0563240:three_prime_UTR 55.0%
TCACCCAAGCCAGAACCATC+AGG + chr4_1:63561783-63561802 None:intergenic 55.0%
! GCATAGCAGTGCGGAGCATT+TGG - chr4_1:63561993-63562012 Msa0563240:intron 55.0%
! TAGCAGTGCGGAGCATTTGG+TGG - chr4_1:63561996-63562015 Msa0563240:intron 55.0%
! AGCAGTGCGGAGCATTTGGT+GGG - chr4_1:63561997-63562016 Msa0563240:intron 55.0%
TGGGTACGATTCTCCAACCC+TGG - chr4_1:63562016-63562035 Msa0563240:intron 55.0%
! TATTGGAGGTGCAGCCATGG+CGG - chr4_1:63562044-63562063 Msa0563240:intron 55.0%
GCATATGGCTTGACCAGGAG+AGG - chr4_1:63562106-63562125 Msa0563240:intron 55.0%
!!! GGTTTTTGAGGTGCCTCTCC+TGG + chr4_1:63562122-63562141 None:intergenic 55.0%
GGGACATTATAGAGGCCCCT+TGG - chr4_1:63562161-63562180 Msa0563240:intron 55.0%
! GGGTTTTGCGTAGCTCCAAG+GGG + chr4_1:63562179-63562198 None:intergenic 55.0%
! GGGGTTTTGCGTAGCTCCAA+GGG + chr4_1:63562180-63562199 None:intergenic 55.0%
! TGGGGTTTTGCGTAGCTCCA+AGG + chr4_1:63562181-63562200 None:intergenic 55.0%
GGCTGCTGCTCCACCAATAA+CGG - chr4_1:63562223-63562242 Msa0563240:intron 55.0%
GAGACGAAGCAGCACAAGGT+AGG + chr4_1:63562432-63562451 None:intergenic 55.0%
CCACTATATCCAAGGCGAGG+AGG + chr4_1:63562456-63562475 None:intergenic 55.0%
CCTCCTCGCCTTGGATATAG+TGG - chr4_1:63562453-63562472 Msa0563240:CDS 55.0%
GACCCACTATATCCAAGGCG+AGG + chr4_1:63562459-63562478 None:intergenic 55.0%
TGGGCCCCACACAAAGTAGT+AGG + chr4_1:63562743-63562762 None:intergenic 55.0%
TAACACTGCAGAGACAGGGC+TGG - chr4_1:63562967-63562986 Msa0563240:intron 55.0%
AACACTGCAGAGACAGGGCT+GGG - chr4_1:63562968-63562987 Msa0563240:intron 55.0%
TGGCGCTATTGCTGTCGATC+AGG - chr4_1:63562997-63563016 Msa0563240:intron 55.0%
GGCGCTATTGCTGTCGATCA+GGG - chr4_1:63562998-63563017 Msa0563240:intron 55.0%
TGGTTCAAATGGCCGTCGCA+AGG + chr4_1:63563085-63563104 None:intergenic 55.0%
AGGTGAGATGGCTGCAAAGG+TGG + chr4_1:63563105-63563124 None:intergenic 55.0%
GCAAGGTGAGATGGCTGCAA+AGG + chr4_1:63563108-63563127 None:intergenic 55.0%
GCTCTAGCAGCAAGGTGAGA+TGG + chr4_1:63563117-63563136 None:intergenic 55.0%
TTGGAAGGGGGATATTGGGG+AGG - chr4_1:63563286-63563305 Msa0563240:intron 55.0%
!!! TTTGGGAGGGGGGTTTTGGA+GGG + chr4_1:63563433-63563452 None:intergenic 55.0%
! TCTGTTTGGGAGGGGGGTTT+TGG + chr4_1:63563437-63563456 None:intergenic 55.0%
TTAGGGTCTGTTTGGGAGGG+GGG + chr4_1:63563443-63563462 None:intergenic 55.0%
GAAAGGGGAAGAGTTCCGGA+GGG - chr4_1:63564691-63564710 Msa0563240:intron 55.0%
! TGTGGGCTATGCGAATCAGC+TGG - chr4_1:63564742-63564761 Msa0563240:intron 55.0%
!! CTACTTGGCCTTGGAAACCC+AGG + chr4_1:63564802-63564821 None:intergenic 55.0%
GCCACCACCACTACAGACAA+AGG + chr4_1:63565483-63565502 None:intergenic 55.0%
!! TGTCTGTAGTGGTGGTGGCA+TGG - chr4_1:63565484-63565503 Msa0563240:intron 55.0%
GAAATCGTTCTCTGGCGGCT+TGG + chr4_1:63565604-63565623 None:intergenic 55.0%
GTGCAAGCTAATCAGCGGGC+AGG - chr4_1:63559884-63559903 Msa0563240:three_prime_UTR 60.0%
AGAGCTGGACGAACACGACC+AGG - chr4_1:63559908-63559927 Msa0563240:three_prime_UTR 60.0%
GAGCTGGACGAACACGACCA+GGG - chr4_1:63559909-63559928 Msa0563240:three_prime_UTR 60.0%
CTGCATTGCTACCAGGGCAG+AGG - chr4_1:63561274-63561293 Msa0563240:three_prime_UTR 60.0%
GGCCGTAATAGTGACCGCCA+TGG + chr4_1:63562061-63562080 None:intergenic 60.0%
AGGGGAGACGAAGCAGCACA+AGG + chr4_1:63562436-63562455 None:intergenic 60.0%
ACACTGCAGAGACAGGGCTG+GGG - chr4_1:63562969-63562988 Msa0563240:intron 60.0%
! GAGACAGGGCTGGGGTCTTT+TGG - chr4_1:63562977-63562996 Msa0563240:intron 60.0%
CAAATGGCCGTCGCAAGGCT+GGG + chr4_1:63563080-63563099 None:intergenic 60.0%
TCAAATGGCCGTCGCAAGGC+TGG + chr4_1:63563081-63563100 None:intergenic 60.0%
! CAGCTCAGGCTCTAGCAGCA+AGG + chr4_1:63563125-63563144 None:intergenic 60.0%
!! GTTTGGGAGGGGGGTTTTGG+AGG + chr4_1:63563434-63563453 None:intergenic 60.0%
GGAAAGGGGAAGAGTTCCGG+AGG - chr4_1:63564690-63564709 Msa0563240:intron 60.0%
! TTTGGGGTGGAAGGTGGGGA+TGG - chr4_1:63565431-63565450 Msa0563240:intron 60.0%
TTGGGGTGGAAGGTGGGGAT+GGG - chr4_1:63565432-63565451 Msa0563240:intron 60.0%
AATCAGCGGGCAGGCAGAGC+TGG - chr4_1:63559893-63559912 Msa0563240:three_prime_UTR 65.0%
TTTGGGTGCGGGTGTGGGTG+CGG - chr4_1:63560210-63560229 Msa0563240:intron 65.0%
CAGCGGAAAGACGGGCACAG+TGG + chr4_1:63560946-63560965 None:intergenic 65.0%
CACTGTGCCCGTCTTTCCGC+TGG - chr4_1:63560944-63560963 Msa0563240:three_prime_UTR 65.0%
TTCGTCTCCCCTCCTCGCCT+TGG - chr4_1:63562444-63562463 Msa0563240:CDS 65.0%
!!! GAGGGGGGTTTTGGAGGGCT+AGG + chr4_1:63563428-63563447 None:intergenic 65.0%
TGGGGTGGAAGGTGGGGATG+GGG - chr4_1:63565433-63565452 Msa0563240:intron 65.0%
GGAAGGTGGGGATGGGGTTG+TGG - chr4_1:63565439-63565458 Msa0563240:intron 65.0%
TTGGGTGCGGGTGTGGGTGC+GGG - chr4_1:63560211-63560230 Msa0563240:intron 70.0%
CCAGCCACCCAGCCTTGCGA+CGG - chr4_1:63563070-63563089 Msa0563240:intron 70.0%
ATGGCCGTCGCAAGGCTGGG+TGG + chr4_1:63563077-63563096 None:intergenic 70.0%
TGGGTGCGGGTGTGGGTGCG+GGG - chr4_1:63560212-63560231 Msa0563240:intron 75.0%
CCGTCGCAAGGCTGGGTGGC+TGG + chr4_1:63563073-63563092 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63559352 63566286 63559352 ID=Msa0563240;Name=Msa0563240
chr4_1 mRNA 63559352 63566286 63559352 ID=Msa0563240-mRNA-1;Parent=Msa0563240;Name=Msa0563240-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.6|0.72|0.72|0.9|0.81|11|2137|368
chr4_1 exon 63559352 63560145 63559352 ID=Msa0563240-mRNA-1:exon:20214;Parent=Msa0563240-mRNA-1
chr4_1 exon 63560336 63560511 63560336 ID=Msa0563240-mRNA-1:exon:20213;Parent=Msa0563240-mRNA-1
chr4_1 exon 63560812 63561970 63560812 ID=Msa0563240-mRNA-1:exon:20212;Parent=Msa0563240-mRNA-1
chr4_1 exon 63562426 63562660 63562426 ID=Msa0563240-mRNA-1:exon:20211;Parent=Msa0563240-mRNA-1
chr4_1 exon 63563073 63563223 63563073 ID=Msa0563240-mRNA-1:exon:20210;Parent=Msa0563240-mRNA-1
chr4_1 exon 63563587 63563679 63563587 ID=Msa0563240-mRNA-1:exon:20209;Parent=Msa0563240-mRNA-1
chr4_1 exon 63563754 63563898 63563754 ID=Msa0563240-mRNA-1:exon:20208;Parent=Msa0563240-mRNA-1
chr4_1 exon 63564343 63564466 63564343 ID=Msa0563240-mRNA-1:exon:20207;Parent=Msa0563240-mRNA-1
chr4_1 exon 63565188 63565280 63565188 ID=Msa0563240-mRNA-1:exon:20206;Parent=Msa0563240-mRNA-1
chr4_1 exon 63565541 63565755 63565541 ID=Msa0563240-mRNA-1:exon:20205;Parent=Msa0563240-mRNA-1
chr4_1 exon 63566228 63566286 63566228 ID=Msa0563240-mRNA-1:exon:20204;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63566228 63566286 63566228 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63565541 63565755 63565541 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63565188 63565280 63565188 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63564343 63564466 63564343 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63563754 63563898 63563754 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63563587 63563679 63563587 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63563073 63563223 63563073 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 CDS 63562434 63562660 63562434 ID=Msa0563240-mRNA-1:cds;Parent=Msa0563240-mRNA-1
chr4_1 three_prime_UTR 63562426 63562433 63562426 ID=Msa0563240-mRNA-1:three_prime_utr;Parent=Msa0563240-mRNA-1
chr4_1 three_prime_UTR 63560812 63561970 63560812 ID=Msa0563240-mRNA-1:three_prime_utr;Parent=Msa0563240-mRNA-1
chr4_1 three_prime_UTR 63560336 63560511 63560336 ID=Msa0563240-mRNA-1:three_prime_utr;Parent=Msa0563240-mRNA-1
chr4_1 three_prime_UTR 63559352 63560145 63559352 ID=Msa0563240-mRNA-1:three_prime_utr;Parent=Msa0563240-mRNA-1
Gene Sequence

>Msa0563240

ATGAGGCTTTTGCAAGTAAACTTGCGATTTTCATTGATTCAGGAAAGGAAATACAATCTAGTGCAAGCTAATCAGCGGGCAGGCAGAGCTGGACGAACACGACCAGGGAAATGCTACCGCCTATATCCTTCCCAAATCTACCATGATGAGTTTTTGGACGTTACAGTTCCTGAAATTCAGAGATCTTCTCTTGCCGGCAGTGTGCTTTACTTGAAGTCATTGGACCTCCCTGATATTGACATTCTCAAATTTGACTTCCTTGATTCTCCGTCATCTGAATCCTTACAAGATGCCTTGAAGCAATTATATCTGATTGACGCTATTGATGAAAATGGTTCAATTACAAGTGTTGGACGAAAAATGGCTGAGCTTCCGTTAGAACCATCCCTGTCAAGAACTTTAATGGAAGCCAACAATTATGGTTGCATAACTGAGGCTTTGACTGTTGCTGCCATGTTATCATCTGAATCTGCATTGCTACCAGGGCAGAGCAAAACTGAGAAAAAGAGGAAACGTCCAATATCTAACCTTCCTGATGGTTCTGGCTTGGGTGACCACATCCAATTACTGCAGATATTCGAGCGTTGGCATCAAAATGATTATGACATTGGTTGGTGCAAAGATCATGGCTTGCAGTTAGAAGGTAGGTTGTCAAACTTGGCTCTGTTGTGCATAGCAGTGCGGAGCATTTGGTGGGTACGATTCTCCAACCCTGGTGTCATATTGGAGATTCAACTCCTTTCCCTACCTTGTGCTGCTTCGTCTCCCCTCCTCGCCTTGGATATAGTGGGTCCATTAAAAGAATCACTTGTATTGTTTATTTTAAATGCTTATGAGTTATTTAAGCCTTTGGAGGCTAAAACTCGTGCCTTCACGTTGGAGACAGGGCTGGGGTCTTTTGGCGCTATTGCTGTCGATCAGGGTCGAGACGAGAGTCCAAAAACTACCATGGACTCACTTGAAGCTCTACAACCAGCCACCCAGCCTTGCGACGGCCATTTGAACCACCTTTGCAGCCATCTCACCTTGCTGCTAGAGCCTGAGCTGCAATGTGTGATAGAGTATTCCGCTATTCTAGTTTCAAGGCCGACTGCTACCCGATATTGA
Protein sequence

>Msa0563240

MRLLQVNLRFSLIQERKYNLVQANQRAGRAGRTRPGKCYRLYPSQIYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALKQLYLIDAIDENGSITSVGRKMAELPLEPSLSRTLMEANNYGCITEALTVAAMLSSESALLPGQSKTEKKRKRPISNLPDGSGLGDHIQLLQIFERWHQNDYDIGWCKDHGLQLEGRLSNLALLCIAVRSIWWVRFSNPGVILEIQLLSLPCAASSPLLALDIVGPLKESLVLFILNAYELFKPLEAKTRAFTLETGLGSFGAIAVDQGRDESPKTTMDSLEALQPATQPCDGHLNHLCSHLTLLLEPELQCVIEYSAILVSRPTATRY*