AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563300 MtrunA17_Chr8g0377671 64.082 245 77 1 20 253 43 287 7.61e-100 292
Msa0563300 MtrunA17_Chr8g0377671 65.600 125 43 0 18 142 133 257 1.84e-49 164
Msa0563300 MtrunA17_Chr8g0377671 52.318 151 61 1 89 228 20 170 4.11e-38 134
Msa0563300 MtrunA17_Chr8g0377671 42.727 110 40 1 146 232 19 128 1.27e-16 77.4
Msa0563300 MtrunA17_Chr8g0377671 68.889 45 14 0 192 236 19 63 3.45e-13 67.8
Msa0563300 MtrunA17_Chr8g0385241 52.830 265 80 3 21 240 80 344 2.15e-77 240
Msa0563300 MtrunA17_Chr8g0385241 36.207 174 90 2 84 236 5 178 2.49e-24 100
Msa0563300 MtrunA17_Chr8g0385241 42.373 118 45 1 18 135 249 343 1.35e-19 87.4
Msa0563300 MtrunA17_Chr8g0382971 50.439 228 102 1 21 237 49 276 3.62e-65 206
Msa0563300 MtrunA17_Chr8g0382971 46.237 186 89 1 58 232 40 225 1.78e-40 142
Msa0563300 MtrunA17_Chr8g0382971 42.157 102 57 1 18 117 184 285 2.46e-17 80.1
Msa0563300 MtrunA17_Chr8g0382971 36.496 137 64 1 22 135 142 278 7.21e-16 75.9
Msa0563300 MtrunA17_Chr8g0382971 33.333 159 48 2 111 223 24 170 9.55e-14 70.1
Msa0563300 MtrunA17_Chr8g0377191 51.020 196 85 1 41 225 10 205 9.05e-59 185
Msa0563300 MtrunA17_Chr8g0377191 57.647 170 61 1 21 179 36 205 1.98e-58 184
Msa0563300 MtrunA17_Chr8g0377191 63.780 127 46 0 18 144 79 205 5.62e-49 160
Msa0563300 MtrunA17_Chr8g0377191 46.753 154 71 1 90 232 13 166 3.71e-35 124
Msa0563300 MtrunA17_Chr8g0377191 73.333 45 12 0 192 236 11 55 1.20e-14 70.5
Msa0563300 MtrunA17_Chr4g0059911 47.442 215 101 2 21 223 33 247 1.05e-57 188
Msa0563300 MtrunA17_Chr4g0059911 40.394 203 109 2 43 233 9 211 8.57e-41 144
Msa0563300 MtrunA17_Chr4g0059911 30.526 190 74 2 105 236 2 191 5.94e-17 79.3
Msa0563300 MtrunA17_Chr8g0383331 61.074 149 47 1 86 223 1 149 2.24e-56 177
Msa0563300 MtrunA17_Chr8g0383331 53.175 126 59 0 18 143 25 150 3.27e-40 136
Msa0563300 MtrunA17_Chr8g0383331 41.892 148 52 2 65 178 3 150 1.51e-29 108
Msa0563300 MtrunA17_Chr8g0377211 56.522 161 58 1 93 253 23 171 3.80e-52 167
Msa0563300 MtrunA17_Chr8g0377211 41.463 164 84 1 4 167 3 154 1.74e-35 124
Msa0563300 MtrunA17_Chr8g0377201 88.506 87 10 0 167 253 1 87 1.76e-48 155
Msa0563300 MtrunA17_Chr8g0377201 45.122 82 33 1 86 167 1 70 1.31e-15 70.1
Msa0563300 MtrunA17_Chr8g0377201 50.000 66 33 0 40 105 1 66 1.17e-13 65.1
Msa0563300 MtrunA17_Chr8g0383551 51.977 177 65 4 65 231 109 275 1.91e-47 161
Msa0563300 MtrunA17_Chr8g0383551 30.153 262 158 7 1 252 121 367 1.79e-20 89.4
Msa0563300 MtrunA17_Chr6g0467061 38.983 236 109 2 20 232 111 334 7.31e-44 150
Msa0563300 MtrunA17_Chr6g0467061 41.709 199 103 2 42 239 18 204 2.86e-41 144
Msa0563300 MtrunA17_Chr6g0467061 36.475 244 119 3 20 239 42 273 2.46e-40 142
Msa0563300 MtrunA17_Chr6g0467061 30.952 168 81 2 20 164 180 335 5.51e-16 76.3
Msa0563300 MtrunA17_Chr2g0316631 36.066 244 120 3 20 239 59 290 1.68e-41 144
Msa0563300 MtrunA17_Chr2g0316631 39.286 196 107 1 42 237 35 218 1.71e-38 136
Msa0563300 MtrunA17_Chr2g0316631 28.346 127 91 0 18 144 172 298 9.79e-12 63.9
Msa0563300 MtrunA17_Chr2g0316611 39.024 205 112 2 36 239 167 359 2.53e-41 145
Msa0563300 MtrunA17_Chr2g0316611 34.483 232 140 2 20 239 59 290 4.83e-40 142
Msa0563300 MtrunA17_Chr2g0316611 39.196 199 108 2 42 239 35 221 1.19e-38 138
Msa0563300 MtrunA17_Chr2g0316611 26.901 171 79 2 20 144 197 367 1.73e-12 66.2
Msa0563300 MtrunA17_Chr8g0380791 39.037 187 103 1 41 216 11 197 4.35e-33 127
Msa0563300 MtrunA17_Chr8g0380791 42.308 156 79 1 21 165 37 192 3.13e-31 121
Msa0563300 MtrunA17_Chr8g0380791 46.087 115 62 0 21 135 83 197 5.23e-25 103
Msa0563300 MtrunA17_Chr8g0380791 34.395 157 92 1 88 233 12 168 5.88e-21 91.7
Msa0563300 MtrunA17_Chr8g0380791 65.306 49 16 1 192 239 12 60 4.51e-13 68.6
Msa0563300 MtrunA17_Chr1g0180261 33.161 193 117 1 21 213 52 232 1.94e-28 113
Msa0563300 MtrunA17_Chr1g0180261 32.530 166 100 1 67 232 52 205 3.23e-23 98.6
Msa0563300 MtrunA17_Chr1g0180261 39.450 109 66 0 25 133 125 233 2.08e-20 90.1
Msa0563300 MtrunA17_Chr1g0180261 41.791 67 39 0 21 87 167 233 1.07e-11 64.7
Msa0563300 MtrunA17_Chr1g0171491 37.419 155 86 1 90 233 62 216 7.25e-28 112
Msa0563300 MtrunA17_Chr1g0171491 31.373 204 128 1 16 219 57 248 1.20e-26 108
Msa0563300 MtrunA17_Chr5g0424111 37.634 186 104 2 31 204 184 369 2.70e-27 108
Msa0563300 MtrunA17_Chr5g0424111 38.608 158 85 1 25 182 225 370 3.57e-24 100
Msa0563300 MtrunA17_Chr5g0424111 35.583 163 94 1 81 232 189 351 2.06e-22 95.5
Msa0563300 MtrunA17_Chr5g0424111 35.780 109 70 0 18 126 264 372 7.15e-14 70.5
Msa0563300 MtrunA17_Chr7g0233351 35.204 196 110 2 44 239 193 371 3.71e-25 103
Msa0563300 MtrunA17_Chr7g0233351 35.326 184 98 2 49 232 184 346 1.80e-24 101
Msa0563300 MtrunA17_Chr7g0233351 34.444 180 107 1 15 183 187 366 2.92e-23 97.8
Msa0563300 MtrunA17_Chr7g0233351 31.818 110 75 0 18 127 259 368 1.01e-11 64.3
Msa0563300 MtrunA17_Chr3g0082501 35.385 195 112 3 41 233 62 244 1.28e-24 102
Msa0563300 MtrunA17_Chr3g0082501 29.302 215 140 1 16 230 60 262 3.90e-20 89.4
Msa0563300 MtrunA17_Chr8g0353121 39.355 155 83 1 90 233 54 208 1.40e-24 102
Msa0563300 MtrunA17_Chr8g0353121 34.518 197 118 1 42 227 52 248 3.99e-24 100
Msa0563300 MtrunA17_Chr8g0353121 35.227 176 102 1 21 196 77 240 3.96e-23 98.2
Msa0563300 MtrunA17_Chr8g0353121 37.500 96 60 0 20 115 145 240 8.94e-13 67.8
Msa0563300 MtrunA17_Chr4g0055371 35.359 181 106 1 14 183 166 346 1.99e-24 100
Msa0563300 MtrunA17_Chr4g0055371 31.878 229 135 2 4 232 119 326 2.57e-24 100
Msa0563300 MtrunA17_Chr5g0398011 44.262 122 56 1 112 233 35 144 2.11e-24 95.1
Msa0563300 MtrunA17_Chr5g0398011 34.127 126 71 1 40 165 32 145 2.46e-15 71.2
Msa0563300 MtrunA17_Chr3g0115111 31.222 221 135 3 5 224 42 246 4.03e-23 98.2
Msa0563300 MtrunA17_Chr3g0115111 28.947 228 140 5 21 243 82 292 7.84e-18 82.8
Msa0563300 MtrunA17_Chr3g0114791 34.211 190 113 2 37 214 179 368 4.11e-23 97.1
Msa0563300 MtrunA17_Chr3g0114791 33.523 176 102 2 72 232 164 339 1.02e-22 96.3
Msa0563300 MtrunA17_Chr3g0114791 32.110 109 74 0 18 126 252 360 8.54e-12 64.3
Msa0563300 MtrunA17_Chr8g0336161 36.875 160 90 1 84 232 192 351 6.98e-23 96.7
Msa0563300 MtrunA17_Chr8g0336161 36.047 172 99 1 43 203 197 368 9.45e-23 96.3
Msa0563300 MtrunA17_Chr8g0336161 37.107 159 88 1 25 183 225 371 4.82e-21 91.7
Msa0563300 MtrunA17_Chr8g0336161 34.545 110 72 0 18 127 264 373 2.00e-12 66.2
Msa0563300 MtrunA17_Chr5g0398021 35.099 151 85 2 103 252 4 142 8.47e-23 91.3
Msa0563300 MtrunA17_Chr5g0398021 33.981 103 68 0 40 142 10 112 2.53e-13 65.9
Msa0563300 MtrunA17_Chr7g0256301 33.696 184 110 2 42 225 70 241 4.33e-22 95.1
Msa0563300 MtrunA17_Chr7g0256301 33.690 187 112 1 16 202 67 241 1.52e-21 93.6
Msa0563300 MtrunA17_Chr7g0256301 35.897 156 89 1 89 233 71 226 1.83e-21 93.2
Msa0563300 MtrunA17_Chr8g0377221 32.057 209 93 4 42 201 4 212 7.61e-21 89.0
Msa0563300 MtrunA17_Chr8g0377221 40.000 130 64 2 112 239 5 122 1.75e-19 85.1
Msa0563300 MtrunA17_Chr8g0377221 34.815 135 63 3 21 135 98 227 1.58e-15 74.3
Msa0563300 MtrunA17_Chr8g0377221 61.224 49 18 1 192 239 4 52 2.51e-11 62.4
Msa0563300 MtrunA17_Chr5g0424301 31.551 187 113 2 16 202 65 236 1.10e-20 90.9
Msa0563300 MtrunA17_Chr5g0424301 31.361 169 103 2 81 236 59 227 2.42e-19 87.0
Msa0563300 MtrunA17_Chr5g0424301 30.612 196 113 3 33 217 57 240 1.32e-17 82.0
Msa0563300 MtrunA17_Chr8g0385201 35.829 187 106 3 41 226 28 201 8.36e-20 88.2
Msa0563300 MtrunA17_Chr8g0385201 36.306 157 88 3 89 233 30 186 1.40e-18 84.7
Msa0563300 MtrunA17_Chr8g0385201 34.426 122 80 0 21 142 55 176 7.05e-14 70.9
Msa0563300 MtrunA17_Chr3g0085921 55.738 61 27 0 80 140 1 61 3.62e-18 77.8
Msa0563300 MtrunA17_Chr3g0085921 54.098 61 28 0 34 94 1 61 1.11e-15 71.2
Msa0563300 MtrunA17_Chr3g0085921 55.000 60 27 0 162 221 2 61 4.99e-13 63.9
Msa0563300 MtrunA17_Chr3g0085921 52.459 61 18 1 126 175 1 61 1.53e-11 60.1
Msa0563300 MtrunA17_Chr3g0131001 33.333 186 112 1 16 201 51 224 3.85e-17 80.5
Msa0563300 MtrunA17_Chr3g0131001 34.054 185 110 1 41 225 53 225 9.71e-16 76.6
Msa0563300 MtrunA17_Chr3g0131001 33.929 168 99 2 66 233 55 210 9.45e-13 67.8
Msa0563300 MtrunA17_Chr3g0131001 31.655 139 83 1 43 181 101 227 1.06e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563300 AT1G60890.2 36.111 216 123 2 1 213 1 204 4.31e-39 144
Msa0563300 AT1G60890.2 33.333 198 120 1 42 239 22 207 1.43e-32 125
Msa0563300 AT1G60890.2 42.609 115 66 0 21 135 93 207 1.60e-28 114
Msa0563300 AT1G60890.1 37.374 198 112 1 16 213 7 192 9.49e-39 143
Msa0563300 AT1G60890.1 33.333 198 120 1 42 239 10 195 8.41e-33 126
Msa0563300 AT1G60890.1 42.609 115 66 0 21 135 81 195 1.12e-28 114
Msa0563300 AT3G56960.2 33.161 193 115 3 42 232 71 251 6.68e-30 118
Msa0563300 AT3G56960.2 30.000 190 121 1 16 205 68 245 4.44e-26 107
Msa0563300 AT3G56960.2 29.545 176 88 3 21 196 119 258 2.90e-20 90.1
Msa0563300 AT3G56960.1 33.161 193 115 3 42 232 71 251 6.68e-30 118
Msa0563300 AT3G56960.1 30.000 190 121 1 16 205 68 245 4.44e-26 107
Msa0563300 AT3G56960.1 29.545 176 88 3 21 196 119 258 2.90e-20 90.1
Msa0563300 AT3G09920.3 35.176 199 116 2 21 219 54 239 8.63e-30 117
Msa0563300 AT3G09920.3 32.124 193 119 1 40 232 50 230 5.64e-25 103
Msa0563300 AT3G09920.4 35.176 199 116 2 21 219 54 239 8.63e-30 117
Msa0563300 AT3G09920.4 32.124 193 119 1 40 232 50 230 5.64e-25 103
Msa0563300 AT3G09920.2 35.176 199 116 2 21 219 54 239 8.63e-30 117
Msa0563300 AT3G09920.2 32.124 193 119 1 40 232 50 230 5.64e-25 103
Msa0563300 AT3G09920.1 35.176 199 116 2 21 219 54 239 8.63e-30 117
Msa0563300 AT3G09920.1 32.124 193 119 1 40 232 50 230 5.64e-25 103
Msa0563300 AT1G10900.2 35.500 200 117 1 14 213 5 192 1.51e-28 114
Msa0563300 AT1G10900.2 37.888 161 89 1 21 170 35 195 3.03e-28 113
Msa0563300 AT1G10900.2 30.151 199 127 1 41 239 9 195 3.89e-21 92.8
Msa0563300 AT1G10900.2 44.286 70 39 0 20 89 126 195 9.74e-11 62.0
Msa0563300 AT1G10900.1 35.500 200 117 1 14 213 5 192 1.51e-28 114
Msa0563300 AT1G10900.1 37.888 161 89 1 21 170 35 195 3.03e-28 113
Msa0563300 AT1G10900.1 30.151 199 127 1 41 239 9 195 3.89e-21 92.8
Msa0563300 AT1G10900.1 44.286 70 39 0 20 89 126 195 9.74e-11 62.0
Msa0563300 AT1G10900.3 35.500 200 117 1 14 213 5 192 1.51e-28 114
Msa0563300 AT1G10900.3 37.888 161 89 1 21 170 35 195 3.03e-28 113
Msa0563300 AT1G10900.3 30.151 199 127 1 41 239 9 195 3.89e-21 92.8
Msa0563300 AT1G10900.3 44.286 70 39 0 20 89 126 195 9.74e-11 62.0
Msa0563300 AT3G07960.3 33.838 198 119 2 42 239 26 211 2.56e-26 107
Msa0563300 AT3G07960.3 30.270 185 117 1 16 200 23 195 8.25e-21 91.7
Msa0563300 AT3G07960.3 31.176 170 105 1 21 190 51 208 3.76e-20 89.7
Msa0563300 AT3G07960.3 31.356 118 81 0 21 138 97 214 8.54e-15 73.9
Msa0563300 AT3G07960.2 33.838 198 119 2 42 239 26 211 2.67e-26 107
Msa0563300 AT3G07960.2 28.431 204 134 1 16 219 23 214 8.15e-21 91.7
Msa0563300 AT3G07960.4 33.838 198 119 2 42 239 26 211 2.67e-26 107
Msa0563300 AT3G07960.4 28.431 204 134 1 16 219 23 214 8.15e-21 91.7
Msa0563300 AT3G07960.1 33.838 198 119 2 42 239 26 211 6.01e-26 106
Msa0563300 AT3G07960.1 28.431 204 134 1 16 219 23 214 1.93e-20 90.5
Msa0563300 AT4G17080.1 36.257 171 97 1 62 232 253 411 3.26e-25 103
Msa0563300 AT4G17080.1 32.787 183 112 1 30 201 244 426 4.04e-23 98.2
Msa0563300 AT4G17080.1 33.333 183 111 1 14 185 251 433 4.58e-23 97.8
Msa0563300 AT1G21920.2 32.075 212 132 1 37 248 168 367 3.96e-25 102
Msa0563300 AT1G21920.2 37.736 159 87 1 25 183 202 348 3.18e-22 94.4
Msa0563300 AT1G21920.2 34.579 107 70 0 18 124 241 347 7.22e-12 65.1
Msa0563300 AT1G21920.1 31.163 215 136 1 37 251 168 370 9.09e-25 102
Msa0563300 AT1G21920.1 37.736 159 87 1 25 183 202 348 6.10e-22 94.4
Msa0563300 AT1G21920.1 34.579 107 70 0 18 124 241 347 9.05e-12 64.7
Msa0563300 AT1G77660.1 30.275 218 140 1 33 250 168 373 2.12e-23 98.2
Msa0563300 AT1G77660.1 38.679 106 65 0 21 126 248 353 1.29e-14 73.2
Msa0563300 AT2G35170.1 35.928 167 96 1 46 201 229 395 6.98e-23 97.4
Msa0563300 AT2G35170.1 33.333 171 102 1 62 232 222 380 2.50e-20 90.1
Msa0563300 AT2G35170.1 33.333 120 80 0 21 140 296 415 6.45e-14 71.2
Msa0563300 AT1G21980.1 30.769 195 123 1 1 195 57 239 2.83e-22 95.9
Msa0563300 AT1G21980.1 34.228 149 86 1 89 237 76 212 1.04e-21 94.4
Msa0563300 AT1G21980.1 30.213 235 135 7 21 243 100 317 1.52e-19 88.2
Msa0563300 AT1G77740.2 30.244 205 129 2 6 208 63 255 1.29e-21 94.0
Msa0563300 AT1G77740.2 29.596 223 135 5 21 235 101 309 1.36e-17 82.4
Msa0563300 AT1G77740.1 30.244 205 129 2 6 208 63 255 1.29e-21 94.0
Msa0563300 AT1G77740.1 29.596 223 135 5 21 235 101 309 1.36e-17 82.4
Msa0563300 AT2G26420.1 36.129 155 88 1 90 233 54 208 1.73e-21 93.6
Msa0563300 AT2G26420.1 33.333 174 104 1 16 189 49 210 1.43e-19 88.2
Msa0563300 AT2G26420.1 34.426 183 107 2 42 223 52 222 9.43e-19 85.9
Msa0563300 AT2G26420.1 39.474 114 69 0 21 134 100 213 3.13e-14 72.4
Msa0563300 AT2G26420.2 36.129 155 88 1 90 233 54 208 2.19e-21 93.6
Msa0563300 AT2G26420.2 33.333 174 104 1 16 189 49 210 1.80e-19 87.8
Msa0563300 AT2G26420.2 39.474 114 69 0 21 134 100 213 3.59e-14 72.4
Msa0563300 AT2G26420.3 36.129 155 88 1 90 233 54 208 2.19e-21 93.6
Msa0563300 AT2G26420.3 33.333 174 104 1 16 189 49 210 1.80e-19 87.8
Msa0563300 AT2G26420.3 39.474 114 69 0 21 134 100 213 3.59e-14 72.4
Msa0563300 AT2G41210.1 30.808 198 125 1 16 213 66 251 7.68e-20 89.0
Msa0563300 AT2G41210.1 30.693 202 122 4 20 218 93 279 9.54e-18 82.8
Msa0563300 AT2G41210.1 28.814 177 107 2 21 178 140 316 1.66e-16 79.3

Find 80 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTGGAAATTGGGAAAA+AGG 0.192503 4_1:-63643004 Msa0563300:CDS
TACATAGGAAATTGGGAAAA+AGG 0.196794 4_1:-63642866 Msa0563300:CDS
GGGATGTCTACATAGGAAAT+TGG 0.225761 4_1:-63642874 Msa0563300:CDS
TATAGTGAAAATTGGCAAAA+AGG 0.231430 4_1:-63643142 Msa0563300:CDS
GGGATGTTTATAGTGAAAAT+TGG 0.242706 4_1:-63643150 Msa0563300:CDS
GTGATGTCTACACTGGAAAT+TGG 0.271199 4_1:-63643012 Msa0563300:CDS
GGGATGTCTATATTGGAAAT+TGG 0.293373 4_1:-63642593 Msa0563300:CDS
GCAAATGGGGATGTCTATAT+TGG 0.307909 4_1:-63642600 Msa0563300:CDS
TGATGATACCAAGCCTTCTA+TGG 0.355104 4_1:-63642335 Msa0563300:CDS
AATGGATTTATACATGGATA+TGG 0.371239 4_1:-63643055 Msa0563300:CDS
AAAGGGATAATTGATGGAAA+AGG 0.385934 4_1:-63643124 Msa0563300:CDS
TTCAATGGTTGTTGGGCAAA+TGG 0.386036 4_1:-63642935 Msa0563300:CDS
GGGGTTTGTAGATATGTAAT+GGG 0.387218 4_1:-63643171 Msa0563300:intron
TGGGAAAGGGATTATGTATT+GGG 0.399786 4_1:-63642834 Msa0563300:CDS
TGGGAAAAGGATTATGTATT+GGG 0.399786 4_1:-63642972 Msa0563300:CDS
GGGTTTATAGATTTGCAAAT+GGG 0.401276 4_1:-63642476 Msa0563300:CDS
GGAAAGTTCACATGGTCTAA+TGG 0.403391 4_1:-63642408 Msa0563300:CDS
TTCGATGGTTGTTGGTCAAA+TGG 0.406478 4_1:-63643073 Msa0563300:CDS
TTTGTTGGTTGTTGGTCAAA+TGG 0.407518 4_1:-63642516 Msa0563300:CDS
ATGGGAAAAGGATTATGTAT+TGG 0.411593 4_1:-63642973 Msa0563300:CDS
TGGTCAAATGGACTTAGAAA+TGG 0.411673 4_1:-63642504 Msa0563300:CDS
ATGGGAAAGGGATTATGTAT+TGG 0.416758 4_1:-63642835 Msa0563300:CDS
AGGATTATGTATTGGGCTAA+TGG 0.419576 4_1:-63642965 Msa0563300:CDS
GAGTTTATAGATTCGCAAAT+GGG 0.420298 4_1:-63642614 Msa0563300:CDS
GAAATTGGAATGAAGGGAAA+AGG 0.420451 4_1:-63642578 Msa0563300:CDS
TGGGGTTTGTAGATATGTAA+TGG 0.423034 4_1:-63643172 Msa0563300:intron
GGGATTATGTATTGGGCTAA+TGG 0.428634 4_1:-63642827 Msa0563300:CDS
TCTGGAGAAATCTCCATAGA+AGG 0.429067 4_1:+63642322 None:intergenic
TAATAATAGATTTGATTCTC+TGG 0.429757 4_1:+63642304 None:intergenic
TATATTGGAAATTGGAATGA+AGG 0.434910 4_1:-63642585 Msa0563300:CDS
AATGGACTTAGAAATGGATC+TGG 0.435279 4_1:-63642498 Msa0563300:CDS
GAAGGGAAAAGGGATGGAAA+AGG 0.438370 4_1:-63642567 Msa0563300:CDS
GGGGTTTATAGATTTGCAAA+TGG 0.443717 4_1:-63642477 Msa0563300:CDS
AAGGGATAATTGATGGAAAA+GGG 0.445537 4_1:-63643123 Msa0563300:CDS
GGGTTTATAGACATACAAAT+GGG 0.449586 4_1:-63642895 Msa0563300:CDS
ACTTTCCGTGTCCATGGAAA+AGG 0.453567 4_1:+63642424 None:intergenic
GAACAATATACGAGGGCGAT+TGG 0.455166 4_1:-63642386 Msa0563300:CDS
AACAATATACGAGGGCGATT+GGG 0.455858 4_1:-63642385 Msa0563300:CDS
GGAGTTTATAGATTCGCAAA+TGG 0.458733 4_1:-63642615 Msa0563300:CDS
AAGGGAAAAGGGATGGAAAA+GGG 0.459912 4_1:-63642566 Msa0563300:CDS
TGTCTACATTGGTAACTTCA+AGG 0.461372 4_1:-63643351 Msa0563300:CDS
GGATGTCTACATAGGAAATT+GGG 0.461455 4_1:-63642873 Msa0563300:CDS
TGGTCAAATGGATTTATACA+TGG 0.474616 4_1:-63643061 Msa0563300:CDS
AAGGGAAAATAGATGGGAAA+AGG 0.475709 4_1:-63642985 Msa0563300:CDS
GGGGTTTATAGACATACAAA+TGG 0.480675 4_1:-63642896 Msa0563300:CDS
TACGAGGGCGATTGGGTGGA+TGG 0.494654 4_1:-63642378 Msa0563300:CDS
ATGGACTTAGAAATGGATCT+GGG 0.500238 4_1:-63642497 Msa0563300:CDS
AATGGACTTAAACATGGATA+CGG 0.513635 4_1:-63642917 Msa0563300:CDS
ATGGACTTAAACATGGATAC+GGG 0.514936 4_1:-63642916 Msa0563300:CDS
ATGTGAACTTTCCGTGTCCA+TGG 0.516047 4_1:+63642418 None:intergenic
TCAAATGGGGATGTCTACAT+TGG 0.518877 4_1:-63643362 None:intergenic
TGATGTCTACACTGGAAATT+GGG 0.521750 4_1:-63643011 Msa0563300:CDS
AGAAATCTCCATAGAAGGCT+TGG 0.524033 4_1:+63642327 None:intergenic
AAATTGGAATGAAGGGAAAA+GGG 0.524702 4_1:-63642577 Msa0563300:CDS
GGAGTCTGTAGATATGCTAA+TGG 0.538717 4_1:-63643034 Msa0563300:CDS
TGGAATGAAGGGAAAAGGGA+TGG 0.545900 4_1:-63642573 Msa0563300:CDS
AAGGGAAAATAGATGGGAAA+GGG 0.549447 4_1:-63642847 Msa0563300:CDS
AATATACGAGGGCGATTGGG+TGG 0.556816 4_1:-63642382 Msa0563300:CDS
GCAAATGGGGATGTGTACTT+CGG 0.559405 4_1:-63642462 Msa0563300:CDS
ATATTGGAAATTGGAATGAA+GGG 0.571235 4_1:-63642584 Msa0563300:CDS
GTAATGCTTTCGATGGTTGT+TGG 0.576821 4_1:-63643081 Msa0563300:CDS
TGGGTGGATGGAGAAATGAC+AGG 0.578211 4_1:-63642366 Msa0563300:CDS
ACAAATGGGGATGTCTACAT+AGG 0.581968 4_1:-63642881 Msa0563300:CDS
CTTCAAGGGTGAACTTGTCA+TGG 0.584668 4_1:-63643336 Msa0563300:CDS
GGTTTATAGATTTGCAAATG+GGG 0.585077 4_1:-63642475 Msa0563300:CDS
AAAGGGAAAATAGATGGGAA+AGG 0.588531 4_1:-63642848 Msa0563300:CDS
GTCTACATTGGTAACTTCAA+GGG 0.589576 4_1:-63643350 Msa0563300:CDS
GCTAATGGTAATGCTTTCGA+TGG 0.589715 4_1:-63643088 Msa0563300:CDS
TGGGCAAATGGACTTAAACA+TGG 0.597458 4_1:-63642923 Msa0563300:CDS
GCTAATGGTGATGTCTACAC+TGG 0.604683 4_1:-63643019 Msa0563300:CDS
GGGTGAACTTGTCATGGCAA+CGG 0.608754 4_1:-63643330 Msa0563300:CDS
AGTTTATAGATTCGCAAATG+GGG 0.638806 4_1:-63642613 Msa0563300:CDS
GGGTTTGTAGATATGTAATG+GGG 0.643876 4_1:-63643170 Msa0563300:intron
TGGACTTAGAAATGGATCTG+GGG 0.662580 4_1:-63642496 Msa0563300:CDS
GGGTGGATGGAGAAATGACA+GGG 0.672932 4_1:-63642365 Msa0563300:CDS
GTCTAATGGAACAATATACG+AGG 0.677791 4_1:-63642394 Msa0563300:CDS
TGGACTTAAACATGGATACG+GGG 0.693897 4_1:-63642915 Msa0563300:CDS
ATGGACACGGAAAGTTCACA+TGG 0.701501 4_1:-63642416 Msa0563300:CDS
GGTTTATAGACATACAAATG+GGG 0.704088 4_1:-63642894 Msa0563300:CDS
TCTAATGGAACAATATACGA+GGG 0.725906 4_1:-63642393 Msa0563300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGGAAAAAAAAAGGAAA+AGG - chr4_1:63642938-63642957 Msa0563300:CDS 20.0%
!! ATTGGAAAAAAAAAGGAAAA+GGG - chr4_1:63642939-63642958 Msa0563300:CDS 20.0%
!! TAATAATAGATTTGATTCTC+TGG + chr4_1:63643356-63643375 None:intergenic 20.0%
!! AATTGGAAAAAAAAAGGAAA+AGG - chr4_1:63642938-63642957 Msa0563300:CDS 20.0%
!! ATTGGAAAAAAAAAGGAAAA+GGG - chr4_1:63642939-63642958 Msa0563300:CDS 20.0%
!! TAATAATAGATTTGATTCTC+TGG + chr4_1:63643356-63643375 None:intergenic 20.0%
!!! GTAATTGGTAATGTTTTTGA+TGG - chr4_1:63642432-63642451 Msa0563300:CDS 25.0%
! TATAGTGAAAATTGGCAAAA+AGG - chr4_1:63642515-63642534 Msa0563300:CDS 25.0%
! ATAGTGAAAATTGGCAAAAA+GGG - chr4_1:63642516-63642535 Msa0563300:CDS 25.0%
!! AATGGATTTATACATGGATA+TGG - chr4_1:63642602-63642621 Msa0563300:CDS 25.0%
! GAGTTTATAGAAATGCAAAT+GGG - chr4_1:63642900-63642919 Msa0563300:CDS 25.0%
! AGTTTATAGAAATGCAAATG+GGG - chr4_1:63642901-63642920 Msa0563300:CDS 25.0%
! AACGGAAATTGGAAAAAAAA+AGG - chr4_1:63642932-63642951 Msa0563300:CDS 25.0%
! TATATTGGAAATTGGAATGA+AGG - chr4_1:63643072-63643091 Msa0563300:CDS 25.0%
! ATATTGGAAATTGGAATGAA+GGG - chr4_1:63643073-63643092 Msa0563300:CDS 25.0%
!!! GTAATTGGTAATGTTTTTGA+TGG - chr4_1:63642432-63642451 Msa0563300:CDS 25.0%
! TATAGTGAAAATTGGCAAAA+AGG - chr4_1:63642515-63642534 Msa0563300:CDS 25.0%
! ATAGTGAAAATTGGCAAAAA+GGG - chr4_1:63642516-63642535 Msa0563300:CDS 25.0%
!! AATGGATTTATACATGGATA+TGG - chr4_1:63642602-63642621 Msa0563300:CDS 25.0%
! GAGTTTATAGAAATGCAAAT+GGG - chr4_1:63642900-63642919 Msa0563300:CDS 25.0%
! AGTTTATAGAAATGCAAATG+GGG - chr4_1:63642901-63642920 Msa0563300:CDS 25.0%
! AACGGAAATTGGAAAAAAAA+AGG - chr4_1:63642932-63642951 Msa0563300:CDS 25.0%
! TATATTGGAAATTGGAATGA+AGG - chr4_1:63643072-63643091 Msa0563300:CDS 25.0%
! ATATTGGAAATTGGAATGAA+GGG - chr4_1:63643073-63643092 Msa0563300:CDS 25.0%
TCAGATGGAACAATATATGA+GGG - chr4_1:63642363-63642382 Msa0563300:CDS 30.0%
!! GTAATGTTTTTGATGGTTGT+TGG - chr4_1:63642439-63642458 Msa0563300:CDS 30.0%
! TTTGATGGTTGTTGGTTAAA+TGG - chr4_1:63642447-63642466 Msa0563300:CDS 30.0%
! TGGTTAAATGGACTTAAACA+TGG - chr4_1:63642459-63642478 Msa0563300:CDS 30.0%
! AATGGACTTAAACATGGATA+TGG - chr4_1:63642465-63642484 Msa0563300:CDS 30.0%
ATGGACTTAAACATGGATAT+GGG - chr4_1:63642466-63642485 Msa0563300:CDS 30.0%
GGGATGTTTATAGTGAAAAT+TGG - chr4_1:63642507-63642526 Msa0563300:CDS 30.0%
AAAGGGATAATTGATGGAAA+AGG - chr4_1:63642533-63642552 Msa0563300:CDS 30.0%
AAGGGATAATTGATGGAAAA+GGG - chr4_1:63642534-63642553 Msa0563300:CDS 30.0%
! TGGAAAAGGGATTTTGAATT+TGG - chr4_1:63642547-63642566 Msa0563300:CDS 30.0%
! TGGTCAAATGGATTTATACA+TGG - chr4_1:63642596-63642615 Msa0563300:CDS 30.0%
ATGGGAAAAGGATTATGTAT+TGG - chr4_1:63642684-63642703 Msa0563300:intron 30.0%
TGGGAAAAGGATTATGTATT+GGG - chr4_1:63642685-63642704 Msa0563300:intron 30.0%
!!! TGCTATTTTCAATGGTTGTT+GGG - chr4_1:63642715-63642734 Msa0563300:intron 30.0%
! AATGGACTTAAACATGGATA+CGG - chr4_1:63642465-63642484 Msa0563300:CDS 30.0%
GGGTTTATAGACATACAAAT+GGG - chr4_1:63642762-63642781 Msa0563300:intron 30.0%
GGTTTATAGACATACAAATG+GGG - chr4_1:63642763-63642782 Msa0563300:intron 30.0%
TACATAGGAAATTGGGAAAA+AGG - chr4_1:63642791-63642810 Msa0563300:intron 30.0%
ACATAGGAAATTGGGAAAAA+GGG - chr4_1:63642792-63642811 Msa0563300:intron 30.0%
GGAGTTTATAGAAATGCAAA+TGG - chr4_1:63642899-63642918 Msa0563300:CDS 30.0%
GAAAAAAAAAGGAAAAGGGA+TGG - chr4_1:63642943-63642962 Msa0563300:CDS 30.0%
ATGGAAATGGGATTATGAAT+TGG - chr4_1:63642962-63642981 Msa0563300:CDS 30.0%
TGGAAATGGGATTATGAATT+GGG - chr4_1:63642963-63642982 Msa0563300:CDS 30.0%
!! GCTAATGGTGATGTTTTTAA+TGG - chr4_1:63642985-63643004 Msa0563300:CDS 30.0%
GAGTTTATAGATTCGCAAAT+GGG - chr4_1:63643043-63643062 Msa0563300:CDS 30.0%
AGTTTATAGATTCGCAAATG+GGG - chr4_1:63643044-63643063 Msa0563300:CDS 30.0%
AAATTGGAATGAAGGGAAAA+GGG - chr4_1:63643080-63643099 Msa0563300:CDS 30.0%
! ATGGAAAAGGGATTTTGAAT+AGG - chr4_1:63642546-63642565 Msa0563300:CDS 30.0%
! TGGAAAAGGGATTTTGAATA+GGG - chr4_1:63643104-63643123 Msa0563300:CDS 30.0%
GGGTTTATAGATTTGCAAAT+GGG - chr4_1:63643181-63643200 Msa0563300:intron 30.0%
GGTTTATAGATTTGCAAATG+GGG - chr4_1:63643182-63643201 Msa0563300:intron 30.0%
TCTAATGGAACAATATACGA+GGG - chr4_1:63643264-63643283 Msa0563300:intron 30.0%
TCAGATGGAACAATATATGA+GGG - chr4_1:63642363-63642382 Msa0563300:CDS 30.0%
!! GTAATGTTTTTGATGGTTGT+TGG - chr4_1:63642439-63642458 Msa0563300:CDS 30.0%
! TTTGATGGTTGTTGGTTAAA+TGG - chr4_1:63642447-63642466 Msa0563300:CDS 30.0%
! TGGTTAAATGGACTTAAACA+TGG - chr4_1:63642459-63642478 Msa0563300:CDS 30.0%
! AATGGACTTAAACATGGATA+TGG - chr4_1:63642465-63642484 Msa0563300:CDS 30.0%
ATGGACTTAAACATGGATAT+GGG - chr4_1:63642466-63642485 Msa0563300:CDS 30.0%
GGGATGTTTATAGTGAAAAT+TGG - chr4_1:63642507-63642526 Msa0563300:CDS 30.0%
AAAGGGATAATTGATGGAAA+AGG - chr4_1:63642533-63642552 Msa0563300:CDS 30.0%
AAGGGATAATTGATGGAAAA+GGG - chr4_1:63642534-63642553 Msa0563300:CDS 30.0%
! TGGAAAAGGGATTTTGAATT+TGG - chr4_1:63642547-63642566 Msa0563300:CDS 30.0%
! TGGTCAAATGGATTTATACA+TGG - chr4_1:63642596-63642615 Msa0563300:CDS 30.0%
ATGGGAAAAGGATTATGTAT+TGG - chr4_1:63642684-63642703 Msa0563300:intron 30.0%
TGGGAAAAGGATTATGTATT+GGG - chr4_1:63642685-63642704 Msa0563300:intron 30.0%
!!! TGCTATTTTCAATGGTTGTT+GGG - chr4_1:63642715-63642734 Msa0563300:intron 30.0%
! AATGGACTTAAACATGGATA+CGG - chr4_1:63642465-63642484 Msa0563300:CDS 30.0%
GGGTTTATAGACATACAAAT+GGG - chr4_1:63642762-63642781 Msa0563300:intron 30.0%
GGTTTATAGACATACAAATG+GGG - chr4_1:63642763-63642782 Msa0563300:intron 30.0%
TACATAGGAAATTGGGAAAA+AGG - chr4_1:63642791-63642810 Msa0563300:intron 30.0%
ACATAGGAAATTGGGAAAAA+GGG - chr4_1:63642792-63642811 Msa0563300:intron 30.0%
GGAGTTTATAGAAATGCAAA+TGG - chr4_1:63642899-63642918 Msa0563300:CDS 30.0%
GAAAAAAAAAGGAAAAGGGA+TGG - chr4_1:63642943-63642962 Msa0563300:CDS 30.0%
ATGGAAATGGGATTATGAAT+TGG - chr4_1:63642962-63642981 Msa0563300:CDS 30.0%
TGGAAATGGGATTATGAATT+GGG - chr4_1:63642963-63642982 Msa0563300:CDS 30.0%
!! GCTAATGGTGATGTTTTTAA+TGG - chr4_1:63642985-63643004 Msa0563300:CDS 30.0%
GAGTTTATAGATTCGCAAAT+GGG - chr4_1:63643043-63643062 Msa0563300:CDS 30.0%
AGTTTATAGATTCGCAAATG+GGG - chr4_1:63643044-63643063 Msa0563300:CDS 30.0%
AAATTGGAATGAAGGGAAAA+GGG - chr4_1:63643080-63643099 Msa0563300:CDS 30.0%
! ATGGAAAAGGGATTTTGAAT+AGG - chr4_1:63642546-63642565 Msa0563300:CDS 30.0%
! TGGAAAAGGGATTTTGAATA+GGG - chr4_1:63643104-63643123 Msa0563300:CDS 30.0%
GGGTTTATAGATTTGCAAAT+GGG - chr4_1:63643181-63643200 Msa0563300:intron 30.0%
GGTTTATAGATTTGCAAATG+GGG - chr4_1:63643182-63643201 Msa0563300:intron 30.0%
TCTAATGGAACAATATACGA+GGG - chr4_1:63643264-63643283 Msa0563300:intron 30.0%
! TGTCTACATTGGTAACTTCA+AGG - chr4_1:63642306-63642325 Msa0563300:CDS 35.0%
! GTCTACATTGGTAACTTCAA+GGG - chr4_1:63642307-63642326 Msa0563300:CDS 35.0%
GTCAGATGGAACAATATATG+AGG - chr4_1:63642362-63642381 Msa0563300:CDS 35.0%
AACAATATATGAGGGCGATT+GGG - chr4_1:63642371-63642390 Msa0563300:CDS 35.0%
GGGATTATGAAGTAGGTAAT+TGG - chr4_1:63642417-63642436 Msa0563300:CDS 35.0%
TGGACTTAAACATGGATATG+GGG - chr4_1:63642467-63642486 Msa0563300:CDS 35.0%
TGGGGTTTGTAGATATGTAA+TGG - chr4_1:63642485-63642504 Msa0563300:CDS 35.0%
GGGGTTTGTAGATATGTAAT+GGG - chr4_1:63642486-63642505 Msa0563300:CDS 35.0%
GGGTTTGTAGATATGTAATG+GGG - chr4_1:63642487-63642506 Msa0563300:CDS 35.0%
TGGCAAAAAGGGATAATTGA+TGG - chr4_1:63642527-63642546 Msa0563300:CDS 35.0%
! GGGATTTTGAATTTGGCTAA+TGG - chr4_1:63642554-63642573 Msa0563300:CDS 35.0%
TGATGTCTACACTGGAAATT+GGG - chr4_1:63642646-63642665 Msa0563300:intron 35.0%
TACACTGGAAATTGGGAAAA+AGG - chr4_1:63642653-63642672 Msa0563300:intron 35.0%
ACACTGGAAATTGGGAAAAA+GGG - chr4_1:63642654-63642673 Msa0563300:intron 35.0%
TGGGAAAAAGGGAAAATAGA+TGG - chr4_1:63642665-63642684 Msa0563300:intron 35.0%
GGGAAAAAGGGAAAATAGAT+GGG - chr4_1:63642666-63642685 Msa0563300:intron 35.0%
AAGGGAAAATAGATGGGAAA+AGG - chr4_1:63642672-63642691 Msa0563300:intron 35.0%
AGGATTATGTATTGGGCTAA+TGG - chr4_1:63642692-63642711 Msa0563300:intron 35.0%
!!! GCTAATGGTGCTATTTTCAA+TGG - chr4_1:63642707-63642726 Msa0563300:intron 35.0%
!!! GTGCTATTTTCAATGGTTGT+TGG - chr4_1:63642714-63642733 Msa0563300:intron 35.0%
ATGGACTTAAACATGGATAC+GGG - chr4_1:63642741-63642760 Msa0563300:intron 35.0%
GGGGTTTATAGACATACAAA+TGG - chr4_1:63642761-63642780 Msa0563300:intron 35.0%
GGATGTCTACATAGGAAATT+GGG - chr4_1:63642784-63642803 Msa0563300:intron 35.0%
TGGGAAAAAGGGAAAATAGA+TGG - chr4_1:63642665-63642684 Msa0563300:intron 35.0%
GGGAAAAAGGGAAAATAGAT+GGG - chr4_1:63642666-63642685 Msa0563300:intron 35.0%
AAAGGGAAAATAGATGGGAA+AGG - chr4_1:63642671-63642690 Msa0563300:intron 35.0%
AAGGGAAAATAGATGGGAAA+GGG - chr4_1:63642672-63642691 Msa0563300:intron 35.0%
ATGGGAAAGGGATTATGTAT+TGG - chr4_1:63642822-63642841 Msa0563300:CDS 35.0%
TGGGAAAGGGATTATGTATT+GGG - chr4_1:63642823-63642842 Msa0563300:CDS 35.0%
!!! TGCTATTTTCGATGGTTGTT+GGG - chr4_1:63642853-63642872 Msa0563300:CDS 35.0%
! AATGGACTTAGAAACGGATA+TGG - chr4_1:63642878-63642897 Msa0563300:CDS 35.0%
AAAAGGAAAAGGGATGGAAA+TGG - chr4_1:63642949-63642968 Msa0563300:CDS 35.0%
AAAGGAAAAGGGATGGAAAT+GGG - chr4_1:63642950-63642969 Msa0563300:CDS 35.0%
!! GTGATGTTTTTAATGGTCGT+TGG - chr4_1:63642992-63643011 Msa0563300:CDS 35.0%
TTTAATGGTCGTTGGTCAAA+TGG - chr4_1:63643000-63643019 Msa0563300:CDS 35.0%
GGAGTTTATAGATTCGCAAA+TGG - chr4_1:63643042-63643061 Msa0563300:CDS 35.0%
GGGATGTCTATATTGGAAAT+TGG - chr4_1:63643064-63643083 Msa0563300:CDS 35.0%
GAAATTGGAATGAAGGGAAA+AGG - chr4_1:63643079-63643098 Msa0563300:CDS 35.0%
!! GCTAATGGTGATGTTTTTGT+TGG - chr4_1:63643126-63643145 Msa0563300:CDS 35.0%
!! GTGATGTTTTTGTTGGTTGT+TGG - chr4_1:63643133-63643152 Msa0563300:CDS 35.0%
! TTTGTTGGTTGTTGGTCAAA+TGG - chr4_1:63643141-63643160 Msa0563300:CDS 35.0%
! TGGTCAAATGGACTTAGAAA+TGG - chr4_1:63643153-63643172 Msa0563300:CDS 35.0%
! AATGGACTTAGAAATGGATC+TGG - chr4_1:63643159-63643178 Msa0563300:CDS 35.0%
ATGGACTTAGAAATGGATCT+GGG - chr4_1:63643160-63643179 Msa0563300:CDS 35.0%
GGGGTTTATAGATTTGCAAA+TGG - chr4_1:63643180-63643199 Msa0563300:intron 35.0%
! TTCAAGAGTAACCTTTTCCA+TGG - chr4_1:63643222-63643241 Msa0563300:intron 35.0%
GTCTAATGGAACAATATACG+AGG - chr4_1:63643263-63643282 Msa0563300:intron 35.0%
! TGTCTACATTGGTAACTTCA+AGG - chr4_1:63642306-63642325 Msa0563300:CDS 35.0%
! GTCTACATTGGTAACTTCAA+GGG - chr4_1:63642307-63642326 Msa0563300:CDS 35.0%
GTCAGATGGAACAATATATG+AGG - chr4_1:63642362-63642381 Msa0563300:CDS 35.0%
AACAATATATGAGGGCGATT+GGG - chr4_1:63642371-63642390 Msa0563300:CDS 35.0%
GGGATTATGAAGTAGGTAAT+TGG - chr4_1:63642417-63642436 Msa0563300:CDS 35.0%
TGGACTTAAACATGGATATG+GGG - chr4_1:63642467-63642486 Msa0563300:CDS 35.0%
TGGGGTTTGTAGATATGTAA+TGG - chr4_1:63642485-63642504 Msa0563300:CDS 35.0%
GGGGTTTGTAGATATGTAAT+GGG - chr4_1:63642486-63642505 Msa0563300:CDS 35.0%
GGGTTTGTAGATATGTAATG+GGG - chr4_1:63642487-63642506 Msa0563300:CDS 35.0%
TGGCAAAAAGGGATAATTGA+TGG - chr4_1:63642527-63642546 Msa0563300:CDS 35.0%
! GGGATTTTGAATTTGGCTAA+TGG - chr4_1:63642554-63642573 Msa0563300:CDS 35.0%
TGATGTCTACACTGGAAATT+GGG - chr4_1:63642646-63642665 Msa0563300:intron 35.0%
TACACTGGAAATTGGGAAAA+AGG - chr4_1:63642653-63642672 Msa0563300:intron 35.0%
ACACTGGAAATTGGGAAAAA+GGG - chr4_1:63642654-63642673 Msa0563300:intron 35.0%
TGGGAAAAAGGGAAAATAGA+TGG - chr4_1:63642665-63642684 Msa0563300:intron 35.0%
GGGAAAAAGGGAAAATAGAT+GGG - chr4_1:63642666-63642685 Msa0563300:intron 35.0%
AAGGGAAAATAGATGGGAAA+AGG - chr4_1:63642672-63642691 Msa0563300:intron 35.0%
AGGATTATGTATTGGGCTAA+TGG - chr4_1:63642692-63642711 Msa0563300:intron 35.0%
!!! GCTAATGGTGCTATTTTCAA+TGG - chr4_1:63642707-63642726 Msa0563300:intron 35.0%
!!! GTGCTATTTTCAATGGTTGT+TGG - chr4_1:63642714-63642733 Msa0563300:intron 35.0%
ATGGACTTAAACATGGATAC+GGG - chr4_1:63642741-63642760 Msa0563300:intron 35.0%
GGGGTTTATAGACATACAAA+TGG - chr4_1:63642761-63642780 Msa0563300:intron 35.0%
GGATGTCTACATAGGAAATT+GGG - chr4_1:63642784-63642803 Msa0563300:intron 35.0%
TGGGAAAAAGGGAAAATAGA+TGG - chr4_1:63642665-63642684 Msa0563300:intron 35.0%
GGGAAAAAGGGAAAATAGAT+GGG - chr4_1:63642666-63642685 Msa0563300:intron 35.0%
AAAGGGAAAATAGATGGGAA+AGG - chr4_1:63642671-63642690 Msa0563300:intron 35.0%
AAGGGAAAATAGATGGGAAA+GGG - chr4_1:63642672-63642691 Msa0563300:intron 35.0%
ATGGGAAAGGGATTATGTAT+TGG - chr4_1:63642822-63642841 Msa0563300:CDS 35.0%
TGGGAAAGGGATTATGTATT+GGG - chr4_1:63642823-63642842 Msa0563300:CDS 35.0%
!!! TGCTATTTTCGATGGTTGTT+GGG - chr4_1:63642853-63642872 Msa0563300:CDS 35.0%
! AATGGACTTAGAAACGGATA+TGG - chr4_1:63642878-63642897 Msa0563300:CDS 35.0%
AAAAGGAAAAGGGATGGAAA+TGG - chr4_1:63642949-63642968 Msa0563300:CDS 35.0%
AAAGGAAAAGGGATGGAAAT+GGG - chr4_1:63642950-63642969 Msa0563300:CDS 35.0%
!! GTGATGTTTTTAATGGTCGT+TGG - chr4_1:63642992-63643011 Msa0563300:CDS 35.0%
TTTAATGGTCGTTGGTCAAA+TGG - chr4_1:63643000-63643019 Msa0563300:CDS 35.0%
GGAGTTTATAGATTCGCAAA+TGG - chr4_1:63643042-63643061 Msa0563300:CDS 35.0%
GGGATGTCTATATTGGAAAT+TGG - chr4_1:63643064-63643083 Msa0563300:CDS 35.0%
GAAATTGGAATGAAGGGAAA+AGG - chr4_1:63643079-63643098 Msa0563300:CDS 35.0%
!! GCTAATGGTGATGTTTTTGT+TGG - chr4_1:63643126-63643145 Msa0563300:CDS 35.0%
!! GTGATGTTTTTGTTGGTTGT+TGG - chr4_1:63643133-63643152 Msa0563300:CDS 35.0%
! TTTGTTGGTTGTTGGTCAAA+TGG - chr4_1:63643141-63643160 Msa0563300:CDS 35.0%
! TGGTCAAATGGACTTAGAAA+TGG - chr4_1:63643153-63643172 Msa0563300:CDS 35.0%
! AATGGACTTAGAAATGGATC+TGG - chr4_1:63643159-63643178 Msa0563300:CDS 35.0%
ATGGACTTAGAAATGGATCT+GGG - chr4_1:63643160-63643179 Msa0563300:CDS 35.0%
GGGGTTTATAGATTTGCAAA+TGG - chr4_1:63643180-63643199 Msa0563300:intron 35.0%
! TTCAAGAGTAACCTTTTCCA+TGG - chr4_1:63643222-63643241 Msa0563300:intron 35.0%
GTCTAATGGAACAATATACG+AGG - chr4_1:63643263-63643282 Msa0563300:intron 35.0%
GAACAATATATGAGGGCGAT+TGG - chr4_1:63642370-63642389 Msa0563300:CDS 40.0%
ATGGGAAAATGACAGGGAAA+GGG - chr4_1:63642397-63642416 Msa0563300:CDS 40.0%
AGGGAAAGGGATTATGAAGT+AGG - chr4_1:63642410-63642429 Msa0563300:CDS 40.0%
! GCTAATGGTAATGCTTTCGA+TGG - chr4_1:63642569-63642588 Msa0563300:CDS 40.0%
GTAATGCTTTCGATGGTTGT+TGG - chr4_1:63642576-63642595 Msa0563300:CDS 40.0%
TTCGATGGTTGTTGGTCAAA+TGG - chr4_1:63642584-63642603 Msa0563300:CDS 40.0%
GGAGTCTGTAGATATGCTAA+TGG - chr4_1:63642623-63642642 Msa0563300:intron 40.0%
GTGATGTCTACACTGGAAAT+TGG - chr4_1:63642645-63642664 Msa0563300:intron 40.0%
TTCAATGGTTGTTGGGCAAA+TGG - chr4_1:63642722-63642741 Msa0563300:intron 40.0%
! TGGGCAAATGGACTTAAACA+TGG - chr4_1:63642734-63642753 Msa0563300:intron 40.0%
TGGACTTAAACATGGATACG+GGG - chr4_1:63642742-63642761 Msa0563300:intron 40.0%
ACAAATGGGGATGTCTACAT+AGG - chr4_1:63642776-63642795 Msa0563300:intron 40.0%
GGGATGTCTACATAGGAAAT+TGG - chr4_1:63642783-63642802 Msa0563300:intron 40.0%
GGGATTATGTATTGGGCTAA+TGG - chr4_1:63642830-63642849 Msa0563300:CDS 40.0%
!!! GCTAATGGTGCTATTTTCGA+TGG - chr4_1:63642845-63642864 Msa0563300:CDS 40.0%
!!! GTGCTATTTTCGATGGTTGT+TGG - chr4_1:63642852-63642871 Msa0563300:CDS 40.0%
! TGGGCAAATGGACTTAGAAA+CGG - chr4_1:63642872-63642891 Msa0563300:CDS 40.0%
GCAAATGGGGATGTCTATAA+CGG - chr4_1:63642914-63642933 Msa0563300:CDS 40.0%
! GGGATGTCTATAACGGAAAT+TGG - chr4_1:63642921-63642940 Msa0563300:CDS 40.0%
GGGATTATGAATTGGGCTAA+TGG - chr4_1:63642970-63642989 Msa0563300:CDS 40.0%
! TGGTCAAATGGACTTAGACA+TGG - chr4_1:63643012-63643031 Msa0563300:CDS 40.0%
GCAAATGGGGATGTCTATAT+TGG - chr4_1:63643057-63643076 Msa0563300:CDS 40.0%
AAGGGAAAAGGGATGGAAAA+GGG - chr4_1:63643091-63643110 Msa0563300:CDS 40.0%
! GGGATTTTGAATAGGGCTAA+TGG - chr4_1:63643111-63643130 Msa0563300:CDS 40.0%
TGGACTTAGAAATGGATCTG+GGG - chr4_1:63643161-63643180 Msa0563300:CDS 40.0%
! AGTAACCTTTTCCATGGACA+CGG - chr4_1:63643228-63643247 Msa0563300:intron 40.0%
GGAAAGTTCACATGGTCTAA+TGG - chr4_1:63643249-63643268 Msa0563300:intron 40.0%
AACAATATACGAGGGCGATT+GGG - chr4_1:63643272-63643291 Msa0563300:intron 40.0%
TGATGATACCAAGCCTTCTA+TGG - chr4_1:63643322-63643341 Msa0563300:intron 40.0%
AGAAATCTCCATAGAAGGCT+TGG + chr4_1:63643333-63643352 None:intergenic 40.0%
TCTGGAGAAATCTCCATAGA+AGG + chr4_1:63643338-63643357 None:intergenic 40.0%
GAACAATATATGAGGGCGAT+TGG - chr4_1:63642370-63642389 Msa0563300:CDS 40.0%
ATGGGAAAATGACAGGGAAA+GGG - chr4_1:63642397-63642416 Msa0563300:CDS 40.0%
AGGGAAAGGGATTATGAAGT+AGG - chr4_1:63642410-63642429 Msa0563300:CDS 40.0%
! GCTAATGGTAATGCTTTCGA+TGG - chr4_1:63642569-63642588 Msa0563300:CDS 40.0%
GTAATGCTTTCGATGGTTGT+TGG - chr4_1:63642576-63642595 Msa0563300:CDS 40.0%
TTCGATGGTTGTTGGTCAAA+TGG - chr4_1:63642584-63642603 Msa0563300:CDS 40.0%
GGAGTCTGTAGATATGCTAA+TGG - chr4_1:63642623-63642642 Msa0563300:intron 40.0%
GTGATGTCTACACTGGAAAT+TGG - chr4_1:63642645-63642664 Msa0563300:intron 40.0%
TTCAATGGTTGTTGGGCAAA+TGG - chr4_1:63642722-63642741 Msa0563300:intron 40.0%
! TGGGCAAATGGACTTAAACA+TGG - chr4_1:63642734-63642753 Msa0563300:intron 40.0%
TGGACTTAAACATGGATACG+GGG - chr4_1:63642742-63642761 Msa0563300:intron 40.0%
ACAAATGGGGATGTCTACAT+AGG - chr4_1:63642776-63642795 Msa0563300:intron 40.0%
GGGATGTCTACATAGGAAAT+TGG - chr4_1:63642783-63642802 Msa0563300:intron 40.0%
GGGATTATGTATTGGGCTAA+TGG - chr4_1:63642830-63642849 Msa0563300:CDS 40.0%
!!! GCTAATGGTGCTATTTTCGA+TGG - chr4_1:63642845-63642864 Msa0563300:CDS 40.0%
!!! GTGCTATTTTCGATGGTTGT+TGG - chr4_1:63642852-63642871 Msa0563300:CDS 40.0%
! TGGGCAAATGGACTTAGAAA+CGG - chr4_1:63642872-63642891 Msa0563300:CDS 40.0%
GCAAATGGGGATGTCTATAA+CGG - chr4_1:63642914-63642933 Msa0563300:CDS 40.0%
! GGGATGTCTATAACGGAAAT+TGG - chr4_1:63642921-63642940 Msa0563300:CDS 40.0%
GGGATTATGAATTGGGCTAA+TGG - chr4_1:63642970-63642989 Msa0563300:CDS 40.0%
! TGGTCAAATGGACTTAGACA+TGG - chr4_1:63643012-63643031 Msa0563300:CDS 40.0%
GCAAATGGGGATGTCTATAT+TGG - chr4_1:63643057-63643076 Msa0563300:CDS 40.0%
AAGGGAAAAGGGATGGAAAA+GGG - chr4_1:63643091-63643110 Msa0563300:CDS 40.0%
! GGGATTTTGAATAGGGCTAA+TGG - chr4_1:63643111-63643130 Msa0563300:CDS 40.0%
TGGACTTAGAAATGGATCTG+GGG - chr4_1:63643161-63643180 Msa0563300:CDS 40.0%
! AGTAACCTTTTCCATGGACA+CGG - chr4_1:63643228-63643247 Msa0563300:intron 40.0%
GGAAAGTTCACATGGTCTAA+TGG - chr4_1:63643249-63643268 Msa0563300:intron 40.0%
AACAATATACGAGGGCGATT+GGG - chr4_1:63643272-63643291 Msa0563300:intron 40.0%
TGATGATACCAAGCCTTCTA+TGG - chr4_1:63643322-63643341 Msa0563300:intron 40.0%
AGAAATCTCCATAGAAGGCT+TGG + chr4_1:63643333-63643352 None:intergenic 40.0%
TCTGGAGAAATCTCCATAGA+AGG + chr4_1:63643338-63643357 None:intergenic 40.0%
CTTCAAGGGTGAACTTGTCA+TGG - chr4_1:63642321-63642340 Msa0563300:CDS 45.0%
! ATGGCAACGGAAAGTACACA+TGG - chr4_1:63642340-63642359 Msa0563300:CDS 45.0%
! GGAAAGTACACATGGTCAGA+TGG - chr4_1:63642348-63642367 Msa0563300:CDS 45.0%
!! TGGGTTGATGGGAAAATGAC+AGG - chr4_1:63642390-63642409 Msa0563300:CDS 45.0%
!! GGGTTGATGGGAAAATGACA+GGG - chr4_1:63642391-63642410 Msa0563300:CDS 45.0%
GATGGGAAAATGACAGGGAA+AGG - chr4_1:63642396-63642415 Msa0563300:CDS 45.0%
! GCTAATGGTGATGTCTACAC+TGG - chr4_1:63642638-63642657 Msa0563300:intron 45.0%
TTCGATGGTTGTTGGGCAAA+TGG - chr4_1:63642860-63642879 Msa0563300:CDS 45.0%
GGACTTAGACATGGATTTGC+AGG - chr4_1:63643021-63643040 Msa0563300:CDS 45.0%
TGGAATGAAGGGAAAAGGGA+TGG - chr4_1:63643084-63643103 Msa0563300:CDS 45.0%
GAAGGGAAAAGGGATGGAAA+AGG - chr4_1:63643090-63643109 Msa0563300:CDS 45.0%
GCAAATGGGGATGTGTACTT+CGG - chr4_1:63643195-63643214 Msa0563300:intron 45.0%
ACTTTCCGTGTCCATGGAAA+AGG + chr4_1:63643236-63643255 None:intergenic 45.0%
ATGTGAACTTTCCGTGTCCA+TGG + chr4_1:63643242-63643261 None:intergenic 45.0%
ATGGACACGGAAAGTTCACA+TGG - chr4_1:63643241-63643260 Msa0563300:intron 45.0%
GAACAATATACGAGGGCGAT+TGG - chr4_1:63643271-63643290 Msa0563300:intron 45.0%
CTTCAAGGGTGAACTTGTCA+TGG - chr4_1:63642321-63642340 Msa0563300:CDS 45.0%
! ATGGCAACGGAAAGTACACA+TGG - chr4_1:63642340-63642359 Msa0563300:CDS 45.0%
! GGAAAGTACACATGGTCAGA+TGG - chr4_1:63642348-63642367 Msa0563300:CDS 45.0%
!! TGGGTTGATGGGAAAATGAC+AGG - chr4_1:63642390-63642409 Msa0563300:CDS 45.0%
!! GGGTTGATGGGAAAATGACA+GGG - chr4_1:63642391-63642410 Msa0563300:CDS 45.0%
GATGGGAAAATGACAGGGAA+AGG - chr4_1:63642396-63642415 Msa0563300:CDS 45.0%
! GCTAATGGTGATGTCTACAC+TGG - chr4_1:63642638-63642657 Msa0563300:intron 45.0%
TTCGATGGTTGTTGGGCAAA+TGG - chr4_1:63642860-63642879 Msa0563300:CDS 45.0%
GGACTTAGACATGGATTTGC+AGG - chr4_1:63643021-63643040 Msa0563300:CDS 45.0%
TGGAATGAAGGGAAAAGGGA+TGG - chr4_1:63643084-63643103 Msa0563300:CDS 45.0%
GAAGGGAAAAGGGATGGAAA+AGG - chr4_1:63643090-63643109 Msa0563300:CDS 45.0%
GCAAATGGGGATGTGTACTT+CGG - chr4_1:63643195-63643214 Msa0563300:intron 45.0%
ACTTTCCGTGTCCATGGAAA+AGG + chr4_1:63643236-63643255 None:intergenic 45.0%
ATGTGAACTTTCCGTGTCCA+TGG + chr4_1:63643242-63643261 None:intergenic 45.0%
ATGGACACGGAAAGTTCACA+TGG - chr4_1:63643241-63643260 Msa0563300:intron 45.0%
GAACAATATACGAGGGCGAT+TGG - chr4_1:63643271-63643290 Msa0563300:intron 45.0%
GGGTGAACTTGTCATGGCAA+CGG - chr4_1:63642327-63642346 Msa0563300:CDS 50.0%
!! TATGAGGGCGATTGGGTTGA+TGG - chr4_1:63642378-63642397 Msa0563300:CDS 50.0%
!! ATGAGGGCGATTGGGTTGAT+GGG - chr4_1:63642379-63642398 Msa0563300:CDS 50.0%
AATATACGAGGGCGATTGGG+TGG - chr4_1:63643275-63643294 Msa0563300:intron 50.0%
TGGGTGGATGGAGAAATGAC+AGG - chr4_1:63643291-63643310 Msa0563300:intron 50.0%
GGGTGGATGGAGAAATGACA+GGG - chr4_1:63643292-63643311 Msa0563300:intron 50.0%
GGGTGAACTTGTCATGGCAA+CGG - chr4_1:63642327-63642346 Msa0563300:CDS 50.0%
!! TATGAGGGCGATTGGGTTGA+TGG - chr4_1:63642378-63642397 Msa0563300:CDS 50.0%
!! ATGAGGGCGATTGGGTTGAT+GGG - chr4_1:63642379-63642398 Msa0563300:CDS 50.0%
AATATACGAGGGCGATTGGG+TGG - chr4_1:63643275-63643294 Msa0563300:intron 50.0%
TGGGTGGATGGAGAAATGAC+AGG - chr4_1:63643291-63643310 Msa0563300:intron 50.0%
GGGTGGATGGAGAAATGACA+GGG - chr4_1:63643292-63643311 Msa0563300:intron 50.0%
TACGAGGGCGATTGGGTGGA+TGG - chr4_1:63643279-63643298 Msa0563300:intron 60.0%
TACGAGGGCGATTGGGTGGA+TGG - chr4_1:63643279-63643298 Msa0563300:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63642299 63643380 63642299 ID=Msa0563300;Name=Msa0563300
chr4_1 mRNA 63642299 63643380 63642299 ID=Msa0563300-mRNA-1;Parent=Msa0563300;Name=Msa0563300-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|3|0|253
chr4_1 exon 63643327 63643380 63643327 ID=Msa0563300-mRNA-1:exon:20290;Parent=Msa0563300-mRNA-1
chr4_1 exon 63642813 63643182 63642813 ID=Msa0563300-mRNA-1:exon:20289;Parent=Msa0563300-mRNA-1
chr4_1 exon 63642299 63642636 63642299 ID=Msa0563300-mRNA-1:exon:20288;Parent=Msa0563300-mRNA-1
chr4_1 CDS 63643327 63643380 63643327 ID=Msa0563300-mRNA-1:cds;Parent=Msa0563300-mRNA-1
chr4_1 CDS 63642813 63643182 63642813 ID=Msa0563300-mRNA-1:cds;Parent=Msa0563300-mRNA-1
chr4_1 CDS 63642299 63642636 63642299 ID=Msa0563300-mRNA-1:cds;Parent=Msa0563300-mRNA-1
Gene Sequence

>Msa0563300

ATGGGGATGTCTACATTGGTAACTTCAAGGGTGAACTTGTCATGGCAACGGAAAATATGTAATGGGGATGTTTATAGTGAAAATTGGCAAAAAGGGATAATTGATGGAAAAGGGATTTTGAATTTGGCTAATGGTAATGCTTTCGATGGTTGTTGGTCAAATGGATTTATACATGGATATGGAGTCTGTAGATATGCTAATGGTGATGTCTACACTGGAAATTGGGAAAAAGGGAAAATAGATGGGAAAAGGATTATGTATTGGGCTAATGGTGCTATTTTCAATGGTTGTTGGGCAAATGGACTTAAACATGGATACGGGGTTTATAGACATACAAATGGGGATGTCTACATAGGAAATTGGGAAAAAGGGAAAATAGATGGGAAAGGGATTATGTATTGGGCTAATGGTGCTATTTTCGATGGAGTTTATAGATTCGCAAATGGGGATGTCTATATTGGAAATTGGAATGAAGGGAAAAGGGATGGAAAAGGGATTTTGAATAGGGCTAATGGTGATGTTTTTGTTGGTTGTTGGTCAAATGGACTTAGAAATGGATCTGGGGTTTATAGATTTGCAAATGGGGATGTGTACTTCGGAAACTTCAAGAGTAACCTTTTCCATGGACACGGAAAGTTCACATGGTCTAATGGAACAATATACGAGGGCGATTGGGTGGATGGAGAAATGACAGGGAACATATTGATGATACCAAGCCTTCTATGGAGATTTCTCCAGAGAATCAAATCTATTATTATCTGA
Protein sequence

>Msa0563300

MGMSTLVTSRVNLSWQRKICNGDVYSENWQKGIIDGKGILNLANGNAFDGCWSNGFIHGYGVCRYANGDVYTGNWEKGKIDGKRIMYWANGAIFNGCWANGLKHGYGVYRHTNGDVYIGNWEKGKIDGKGIMYWANGAIFDGVYRFANGDVYIGNWNEGKRDGKGILNRANGDVFVGCWSNGLRNGSGVYRFANGDVYFGNFKSNLFHGHGKFTWSNGTIYEGDWVDGEMTGNILMIPSLLWRFLQRIKSIII*