AlfalfaGEDB | Msa0563660

M. sativa cultivar zhongmu-4 / Msa0563660

KEGG: K14489
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
PFAM: PF03924.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563660	XP_013446582.1	98.247	970	17	0	1	970	1	970	0.0	1984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563660	sp\|Q9C5U1\|AHK3_ARATH	68.330	982	286	7	1	969	61	1030	0.0	1345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563660	A0A072TSW4	98.247	970	17	0	1	970	1	970	0.0	1984

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TFs/TRs:

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Gene ID	Type	Classification
Msa0563660	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0359020	Msa0563660	0.801641	8.180347e-49	-8.615850e-47
Msa0563660	Msa1106510	0.809053	2.288271e-50	-8.615850e-47
Msa0563660	Msa1228640	0.800253	1.572045e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563660	MtrunA17_Chr8g0377481	98.247	970	17	0	1	970	1	970	0.0	1984
Msa0563660	MtrunA17_Chr3g0122391	80.102	980	184	5	1	970	49	1027	0.0	1611
Msa0563660	MtrunA17_Chr5g0447641	53.481	991	399	14	18	967	243	1212	0.0	1033
Msa0563660	MtrunA17_Chr8g0392301	52.462	995	396	18	21	967	29	994	0.0	974
Msa0563660	MtrunA17_Chr2g0311191	44.118	306	71	4	203	508	29	234	6.03e-65	218
Msa0563660	MtrunA17_Chr3g0136601	36.957	276	163	4	395	661	373	646	3.59e-40	160
Msa0563660	MtrunA17_Chr5g0405701	33.750	320	188	6	345	657	462	764	2.35e-38	155
Msa0563660	MtrunA17_Chr5g0405701	34.722	144	62	2	838	955	1047	1184	1.11e-17	89.0
Msa0563660	MtrunA17_Chr1g0150511	33.882	304	163	6	395	661	379	681	3.99e-38	154
Msa0563660	MtrunA17_Chr8g0371601	34.603	315	192	5	345	657	424	726	6.72e-37	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563660	AT1G27320.1	68.330	982	286	7	1	969	61	1030	0.0	1345
Msa0563660	AT5G35750.1	56.726	959	375	10	34	967	230	1173	0.0	1063
Msa0563660	AT2G01830.5	52.984	972	398	14	31	967	113	1060	0.0	988
Msa0563660	AT2G01830.1	52.984	972	398	14	31	967	101	1048	0.0	987
Msa0563660	AT2G01830.4	52.984	972	398	14	31	967	101	1048	0.0	987
Msa0563660	AT2G01830.2	52.984	972	398	14	31	967	124	1071	0.0	987
Msa0563660	AT2G01830.6	52.984	972	398	14	31	967	101	1048	0.0	987
Msa0563660	AT2G01830.3	52.984	972	398	14	31	967	101	1048	0.0	987
Msa0563660	AT5G10720.1	35.252	278	145	3	395	668	369	615	7.44e-42	166
Msa0563660	AT5G10720.1	32.414	145	78	3	842	968	779	921	1.21e-13	75.9

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Find 228 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGCCTGAGTTGGAA+AGG	0.608555	4_1:+64103660	Msa0563660:CDS
AAACATGCGTCGAACTGATG+AGG	0.675854	4_1:-64104623	None:intergenic
AAACATGGAGGAACTGGTAT+TGG	0.453248	4_1:+64103849	Msa0563660:CDS
AAACTGCTAATAGGTGATCC+AGG	0.508651	4_1:+64102982	Msa0563660:CDS
AAAGATGTGGCTGAAATGGT+GGG	0.675883	4_1:+64099765	Msa0563660:exon
AAAGGATTCAAGCAACTAAT+GGG	0.437942	4_1:+64101205	Msa0563660:CDS
AAAGGGAGGAAATATTGAAC+TGG	0.511995	4_1:+64105275	Msa0563660:three_prime_UTR
AAATAGACATAGCTTGAATA+TGG	0.369912	4_1:-64100032	None:intergenic
AACAGTACTATCAGTATATT+GGG	0.359905	4_1:+64099821	Msa0563660:CDS
AACTGCATTCCCTTTGTTTA+TGG	0.188548	4_1:-64104171	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTAGTTGAGAATTGAGAT+GGG	-	chr4_1:64099165-64099184	None:intergenic	30.0%
ATCAATTTCTGTTGAGAGTT+AGG	+	chr4_1:64099436-64099455	Msa0563660:five_prime_UTR	30.0%
AAGACAGCATCTTATTATCA+AGG	+	chr4_1:64099575-64099594	Msa0563660:five_prime_UTR	30.0%
TTGTAAGTATTCATCAACAG+TGG	+	chr4_1:64099730-64099749	Msa0563660:five_prime_UTR	30.0%
CAACAGTACTATCAGTATAT+TGG	+	chr4_1:64099820-64099839	Msa0563660:CDS	30.0%
GAAAATAAGTACCTGATCAA+TGG	-	chr4_1:64100094-64100113	None:intergenic	30.0%
CTAGAACAATCTTTGATCAA+AGG	-	chr4_1:64100145-64100164	None:intergenic	30.0%
CTTTGATCAAAGATTGTTCT+AGG	+	chr4_1:64100143-64100162	Msa0563660:intron	30.0%
ATTAATTGAACGTAACCATG+TGG	-	chr4_1:64100291-64100310	None:intergenic	30.0%
ACGATGTCAATATGTCATAT+TGG	+	chr4_1:64100356-64100375	Msa0563660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	64099040	64105662	64099040	ID=Msa0563660;Name=Msa0563660
chr4_1	mRNA	64099040	64105662	64099040	ID=Msa0563660-mRNA-1;Parent=Msa0563660;Name=Msa0563660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=729\|1\|1\|1\|1\|1\|10\|448\|970
chr4_1	exon	64099040	64100101	64099040	ID=Msa0563660-mRNA-1:exon:20427;Parent=Msa0563660-mRNA-1
chr4_1	exon	64100450	64100731	64100450	ID=Msa0563660-mRNA-1:exon:20428;Parent=Msa0563660-mRNA-1
chr4_1	exon	64101057	64101226	64101057	ID=Msa0563660-mRNA-1:exon:20429;Parent=Msa0563660-mRNA-1
chr4_1	exon	64101886	64102098	64101886	ID=Msa0563660-mRNA-1:exon:20430;Parent=Msa0563660-mRNA-1
chr4_1	exon	64102188	64102374	64102188	ID=Msa0563660-mRNA-1:exon:20431;Parent=Msa0563660-mRNA-1
chr4_1	exon	64102457	64102508	64102457	ID=Msa0563660-mRNA-1:exon:20432;Parent=Msa0563660-mRNA-1
chr4_1	exon	64102610	64102839	64102610	ID=Msa0563660-mRNA-1:exon:20433;Parent=Msa0563660-mRNA-1
chr4_1	exon	64102952	64103050	64102952	ID=Msa0563660-mRNA-1:exon:20434;Parent=Msa0563660-mRNA-1
chr4_1	exon	64103543	64104675	64103543	ID=Msa0563660-mRNA-1:exon:20435;Parent=Msa0563660-mRNA-1
chr4_1	exon	64105001	64105662	64105001	ID=Msa0563660-mRNA-1:exon:20436;Parent=Msa0563660-mRNA-1
chr4_1	five_prime_UTR	64099040	64099768	64099040	ID=Msa0563660-mRNA-1:five_prime_utr;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64099769	64100101	64099769	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64100450	64100731	64100450	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64101057	64101226	64101057	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64101886	64102098	64101886	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64102188	64102374	64102188	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64102457	64102508	64102457	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64102610	64102839	64102610	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64102952	64103050	64102952	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64103543	64104675	64103543	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	CDS	64105001	64105214	64105001	ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1	three_prime_UTR	64105215	64105662	64105215	ID=Msa0563660-mRNA-1:three_prime_utr;Parent=Msa0563660-mRNA-1

Gene Sequence

>Msa0563660

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGAGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCCAAGAGTCCCTCAGCCATTGATCAGAGAACTTTTGCTAGCTACACAGAAAGAACAGCTTTTGAGAGGCCTCTAACAAGTGGTGTGGCATATGCTGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATAAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGTGGGGTATTTGATGTTGAGTCATTAGTGGAGAAATTACTTGAGCAACTTGCTAGCAAGCGAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATATATCAGGGGACGTGTTCAATCATGTCAGCACTCTTAACTTTGGTGACCCTTTCAGGAAACATGAGATGCATTGCAGGTTCAAACAGAAACCGCCTTTGCCTTGCGCTGCAATATTAACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACCGTGAATCGAATTGCAAAAGTAGAAGATGATTACCATGAAATGATGGAGCTTAAAAAACGTGCAGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTTGCCACTGTTTCCCATGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAAGCAGTGCTTTTTGACATACGCTCGATTTTGGATGATGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTTGAGTTGGCAGCTTATGTGTCAGATCAAGTTCCTAAACTGCTAATAGGTGATCCAGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAACTCAATTAAGTTCACAGACAAAGGACACATTTTTGTGACTATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCCCTGTTGTGAAAAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGATGGACCACTTGGTTCTTTCTCTTCCATCTCTAGTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGACGGTATTCCTAGAGAATCTCAACCTCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCCCGAAAACATGGAGGAACTGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGCAAGTGAACCAAAAACTGGGTCCACTTTTACTTTTACTGCTGTCTTCGCCAATGGACTCCTCAGTTCTAATGAGTGTAAAATACGGCAAATCAACGACCAAACAAAACCTGCATCTTCAGAATTTGAGGGTATGAATGCATTGGTTATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCAATATCACATCCAACGCCTTGGCATTCACGTTGAAACGGTTTCAGATTTGAACCAAGGTGTGTCAACCATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGAGCAGGAAGTTTGGTATAGAGATTCAAGCATGTCGTCTCATTTTTTCGACAGCACAAGGAAAATCAGCCACGGTTTTCCTCCAAAGTTGTTCATTCTTGTTAATTCTAGTAACTCTTCTAAAACTAGCAGTGTAACGTCAGATGTTGATAATCCTACTATCATCACAAAACCACTCAGGGCAAGCATGCTTGCTGCGTCACTACAGCGAGAGATGAATGTTAGGAACAAGAGAACTCTAAATAGGGACCTTCAAAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTTGATGATAATGGCGTGAATCGTGCAGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCATCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAGGTAGAATCAGAGAGATGGAACAGAATCTAAACACAGAAGTATCTATAAACTGGCATGTGCCGATTTTAGCGATGACTGCAGATGTAATTCAGGCTACACATGAGAAATGCCTAAGATGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCCGAACAACTTTACCGGGAAGTTTCTCGGTTTTTCCTGTCATCTTGA

Protein sequence

>Msa0563660

MWLKWWEKILGNGYKINQQYYQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLEQLASKRSVIVNVYDTTNHTHPIAMYGSNISGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPLPCAAILTSIGILVIALLVGHIFYATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDQVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGFKAFSQDGPLGSFSSISSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECKIRQINDQTKPASSEFEGMNALVIDPRPIRAKVSQYHIQRLGIHVETVSDLNQGVSTINKGNAVINMVLIEQEVWYRDSSMSSHFFDSTRKISHGFPPKLFILVNSSNSSKTSSVTSDVDNPTIITKPLRASMLAASLQREMNVRNKRTLNRDLQNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATGRIREMEQNLNTEVSINWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFLSS*