AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563660 MtrunA17_Chr8g0377481 98.247 970 17 0 1 970 1 970 0.0 1984
Msa0563660 MtrunA17_Chr3g0122391 80.102 980 184 5 1 970 49 1027 0.0 1611
Msa0563660 MtrunA17_Chr5g0447641 53.481 991 399 14 18 967 243 1212 0.0 1033
Msa0563660 MtrunA17_Chr8g0392301 52.462 995 396 18 21 967 29 994 0.0 974
Msa0563660 MtrunA17_Chr2g0311191 44.118 306 71 4 203 508 29 234 6.03e-65 218
Msa0563660 MtrunA17_Chr3g0136601 36.957 276 163 4 395 661 373 646 3.59e-40 160
Msa0563660 MtrunA17_Chr5g0405701 33.750 320 188 6 345 657 462 764 2.35e-38 155
Msa0563660 MtrunA17_Chr5g0405701 34.722 144 62 2 838 955 1047 1184 1.11e-17 89.0
Msa0563660 MtrunA17_Chr1g0150511 33.882 304 163 6 395 661 379 681 3.99e-38 154
Msa0563660 MtrunA17_Chr8g0371601 34.603 315 192 5 345 657 424 726 6.72e-37 150
Msa0563660 MtrunA17_Chr8g0371601 36.296 135 63 3 838 955 1026 1154 6.91e-18 89.4
Msa0563660 MtrunA17_Chr4g0013831 28.926 363 221 6 383 742 335 663 3.15e-35 144
Msa0563660 MtrunA17_Chr4g0013831 32.624 141 78 5 820 959 600 724 6.20e-12 69.7
Msa0563660 MtrunA17_Chr7g0269631 30.357 280 162 4 383 661 335 582 3.62e-28 121
Msa0563660 MtrunA17_Chr1g0194741 30.249 281 164 8 381 642 384 651 1.78e-25 113
Msa0563660 MtrunA17_Chr1g0197591 26.000 350 208 10 344 666 328 653 2.42e-24 110
Msa0563660 MtrunA17_Chr1g0197591 37.692 130 64 4 841 963 926 1045 1.69e-15 81.6
Msa0563660 MtrunA17_Chr7g0274831 33.562 146 84 4 826 970 628 761 1.69e-17 87.8
Msa0563660 MtrunA17_Chr7g0274831 21.542 441 290 11 371 804 354 745 8.04e-15 79.3
Msa0563660 MtrunA17_Chr1g0190021 33.835 133 78 3 840 970 634 758 9.33e-16 82.0
Msa0563660 MtrunA17_Chr1g0190021 25.595 168 125 0 371 538 350 517 2.61e-12 70.9
Msa0563660 MtrunA17_Chr1g0186431 32.331 133 81 3 837 968 631 755 6.62e-15 79.3
Msa0563660 MtrunA17_Chr1g0186431 26.174 149 110 0 371 519 344 492 5.66e-11 66.6
Msa0563660 MtrunA17_Chr1g0194731 32.609 138 69 6 838 964 325 449 1.30e-13 74.3
Msa0563660 MtrunA17_Chr1g0168161 31.579 133 81 3 837 967 633 757 2.00e-13 74.7
Msa0563660 MtrunA17_Chr8g0343551 41.463 82 36 3 882 963 13 82 1.00e-12 64.7
Msa0563660 MtrunA17_Chr8g0364781 32.759 116 70 3 844 959 15 122 5.14e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563660 AT1G27320.1 68.330 982 286 7 1 969 61 1030 0.0 1345
Msa0563660 AT5G35750.1 56.726 959 375 10 34 967 230 1173 0.0 1063
Msa0563660 AT2G01830.5 52.984 972 398 14 31 967 113 1060 0.0 988
Msa0563660 AT2G01830.1 52.984 972 398 14 31 967 101 1048 0.0 987
Msa0563660 AT2G01830.4 52.984 972 398 14 31 967 101 1048 0.0 987
Msa0563660 AT2G01830.2 52.984 972 398 14 31 967 124 1071 0.0 987
Msa0563660 AT2G01830.6 52.984 972 398 14 31 967 101 1048 0.0 987
Msa0563660 AT2G01830.3 52.984 972 398 14 31 967 101 1048 0.0 987
Msa0563660 AT5G10720.1 35.252 278 145 3 395 668 369 615 7.44e-42 166
Msa0563660 AT5G10720.1 32.414 145 78 3 842 968 779 921 1.21e-13 75.9
Msa0563660 AT1G66340.1 29.108 426 255 8 383 804 334 716 6.82e-38 152
Msa0563660 AT1G66340.1 29.167 120 78 2 840 959 609 721 4.22e-11 67.4
Msa0563660 AT2G17820.1 32.923 325 202 6 345 666 451 762 2.52e-36 149
Msa0563660 AT2G17820.1 33.333 150 62 3 838 955 1041 1184 4.89e-15 80.5
Msa0563660 AT2G40940.1 32.143 280 157 4 383 661 334 581 9.24e-31 129
Msa0563660 AT2G47430.1 31.126 302 179 8 380 666 383 670 4.87e-29 125
Msa0563660 AT2G47430.1 37.594 133 59 5 836 952 981 1105 8.72e-14 76.6
Msa0563660 AT3G04580.2 34.286 140 81 3 828 965 629 759 1.79e-15 81.6
Msa0563660 AT3G04580.2 21.711 456 292 14 379 817 354 761 6.76e-13 73.6
Msa0563660 AT3G04580.1 34.286 140 81 3 828 965 629 759 1.79e-15 81.6
Msa0563660 AT3G04580.1 21.711 456 292 14 379 817 354 761 6.76e-13 73.6
Msa0563660 AT3G23150.1 35.252 139 74 3 837 970 642 769 6.86e-15 79.7

Find 228 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTTGGTGACCCTTTC+AGG 0.130440 4_1:+64102056 Msa0563660:CDS
TTTCTTAAATTTAATCTATT+TGG 0.136484 4_1:+64099546 Msa0563660:five_prime_UTR
ATTGCATACCCATCCATTTC+TGG 0.150261 4_1:-64104662 None:intergenic
AACTGCATTCCCTTTGTTTA+TGG 0.188548 4_1:-64104171 None:intergenic
ATTTCTGTTGATATGCTTTC+TGG 0.198728 4_1:+64100705 Msa0563660:CDS
GATCAGGCAAAGATTGAATT+TGG 0.209090 4_1:+64102720 Msa0563660:CDS
ATCAATTTCTGTTGAGAGTT+AGG 0.255426 4_1:+64099436 Msa0563660:five_prime_UTR
GTCACTTATAAATGAGGTTT+TGG 0.260867 4_1:+64102698 Msa0563660:CDS
ATTCTAATTGTTGATGATAA+TGG 0.264746 4_1:+64104503 Msa0563660:CDS
TAAAATGATTTGAGTCAAAA+AGG 0.265333 4_1:-64105309 None:intergenic
ACTAGTTAGTAGTACAAAAT+TGG 0.272101 4_1:+64099658 Msa0563660:five_prime_UTR
AGGGATGATGCATATGCTTA+TGG 0.272594 4_1:+64102608 Msa0563660:intron
GGCCTCATGAATGGCGAAAT+TGG 0.276640 4_1:+64103897 Msa0563660:CDS
GTTACTTATAGGTATGTATT+AGG 0.278145 4_1:+64105517 Msa0563660:three_prime_UTR
GGAACAAGAGAACTCTAAAT+AGG 0.280932 4_1:+64104435 Msa0563660:CDS
CAACAGTACTATCAGTATAT+TGG 0.283486 4_1:+64099820 Msa0563660:CDS
TTCCTATTGGCCCCTCCTTT+TGG 0.287596 4_1:+64099380 Msa0563660:five_prime_UTR
GAAAAGAAACAGAAAAGTTT+TGG 0.287824 4_1:+64105213 Msa0563660:exon
TCTCATGGGCAACTCAATTA+AGG 0.288486 4_1:+64103029 Msa0563660:CDS
CTTGTTATTGCTCTCCTTGT+TGG 0.291084 4_1:+64102243 Msa0563660:CDS
ATGTATGGCTCAAATATATC+AGG 0.301140 4_1:+64102007 Msa0563660:CDS
GGATCACCTATTAGCAGTTT+AGG 0.307745 4_1:-64102979 None:intergenic
GGTATGTAATAGTTACTTAT+AGG 0.312340 4_1:+64105506 Msa0563660:three_prime_UTR
TCTCTTAGCCATCTTCTTGT+TGG 0.315553 4_1:+64104473 Msa0563660:CDS
CTCTTAGCCATCTTCTTGTT+GGG 0.318317 4_1:+64104474 Msa0563660:CDS
CGATTATGCTGTAGAGGAAT+TGG 0.327475 4_1:+64100617 Msa0563660:CDS
TCAGTTCGACGCATGTTTCA+TGG 0.329522 4_1:+64104628 Msa0563660:CDS
GTTGCTTGAATCCTTTCATT+TGG 0.333595 4_1:-64101198 None:intergenic
ATTATTTGCCGAAACCTTCC+TGG 0.351418 4_1:-64103000 None:intergenic
TCATCGGTGTTCTGATTTCA+TGG 0.354261 4_1:-64102474 None:intergenic
ATAAAGGAATGATAAGATTC+TGG 0.357594 4_1:-64099461 None:intergenic
AACAGTACTATCAGTATATT+GGG 0.359905 4_1:+64099821 Msa0563660:CDS
ATTGGAGCCATCCCCTCTTC+AGG 0.361853 4_1:+64100635 Msa0563660:CDS
GGTTGATTGAAGTGAAATAA+AGG 0.362623 4_1:+64105538 Msa0563660:three_prime_UTR
GGATATTCAAATGCCAGAAA+TGG 0.363538 4_1:+64104649 Msa0563660:CDS
AATAAAGGAAAGTAGGTTCT+TGG 0.363674 4_1:+64105553 Msa0563660:three_prime_UTR
CCTGAGTTGGAAAGGATTCA+AGG 0.368177 4_1:+64103668 Msa0563660:CDS
AAATAGACATAGCTTGAATA+TGG 0.369912 4_1:-64100032 None:intergenic
GCATAATCGTTCTTATGAAC+TGG 0.371534 4_1:-64100603 None:intergenic
CAAGTTCCTAAACTGCTAAT+AGG 0.375479 4_1:+64102973 Msa0563660:CDS
GAAAGGATTCAAGCAACTAA+TGG 0.381749 4_1:+64101204 Msa0563660:CDS
AACTTTACCGGGAAGTTTCT+CGG 0.384334 4_1:+64105174 Msa0563660:CDS
TTGAAGCCGAACAACTTTAC+CGG 0.389648 4_1:+64105162 Msa0563660:CDS
ACCCTTATAAAATAAAATAA+AGG 0.390649 4_1:-64099477 None:intergenic
ACACAGAAGTATCTATAAAC+TGG 0.394770 4_1:+64105045 Msa0563660:CDS
TCATTTGGAGTTGCATTTGA+TGG 0.397149 4_1:-64101183 None:intergenic
TTTGAGCCATACATGGCAAT+TGG 0.398441 4_1:-64101998 None:intergenic
GTGTTGCGTGCAAGAGAATC+AGG 0.399039 4_1:+64101072 Msa0563660:CDS
GGAAACATGAGATGCATTGC+AGG 0.401426 4_1:+64102077 Msa0563660:CDS
CAGAACCACGCGAGTGTTCA+AGG 0.407862 4_1:-64099261 None:intergenic
ACCTGCATCTTCAGAATTTG+AGG 0.409248 4_1:+64104031 Msa0563660:CDS
AACTTCCCGGTAAAGTTGTT+CGG 0.410398 4_1:-64105168 None:intergenic
GATGACTGCAGATGTAATTC+AGG 0.412226 4_1:+64105085 Msa0563660:CDS
TCTTGATTGAGCAGGAAGTT+TGG 0.412734 4_1:+64104204 Msa0563660:CDS
GCTGCAATATTAACTTCAAT+TGG 0.414497 4_1:+64102216 Msa0563660:CDS
GAACAAGAGAACTCTAAATA+GGG 0.416973 4_1:+64104436 Msa0563660:CDS
TATGCCACACCACTTGTTAG+AGG 0.422210 4_1:-64100492 None:intergenic
CCATCTCATCGTCTCACAAA+AGG 0.422335 4_1:+64105257 Msa0563660:three_prime_UTR
ATTGTATCTGTTGAAGATAC+AGG 0.422648 4_1:+64103753 Msa0563660:CDS
GTTGGACTGTAGTGTCTTTG+TGG 0.426681 4_1:+64099899 Msa0563660:CDS
TGAAAGAGCTAGGATTGTTC+AGG 0.427952 4_1:+64099987 Msa0563660:CDS
ATCAATGGCTGAGGGACTCT+TGG 0.428200 4_1:-64100076 None:intergenic
ACTTTACATGAAAGAATCAA+TGG 0.428227 4_1:-64105439 None:intergenic
ACTAAGCATTAGCAAGTGTT+TGG 0.428271 4_1:+64103872 Msa0563660:CDS
TTAACAAGAATGAACAACTT+TGG 0.432009 4_1:-64104293 None:intergenic
AAAGGATTCAAGCAACTAAT+GGG 0.437942 4_1:+64101205 Msa0563660:CDS
ATTTGATGTTGAGTCATTAG+TGG 0.439863 4_1:+64101901 Msa0563660:CDS
CTATTTGTTATTATGTTGTC+AGG 0.440816 4_1:-64099412 None:intergenic
TCCCGAAAACATGGAGGAAC+TGG 0.442693 4_1:+64103843 Msa0563660:CDS
GCAAATAATTACTAATCTCA+TGG 0.446857 4_1:+64103014 Msa0563660:CDS
CATGTAGTTGAGAATTGAGA+TGG 0.448533 4_1:-64099163 None:intergenic
TCTGATAAGTCCCAAGGAAA+AGG 0.449413 4_1:+64102810 Msa0563660:CDS
TGATAGGGAGTGTGCATAGT+AGG 0.450644 4_1:+64105380 Msa0563660:three_prime_UTR
AAACATGGAGGAACTGGTAT+TGG 0.453248 4_1:+64103849 Msa0563660:CDS
CTATTGCTAAGCAGGTATCT+TGG 0.457587 4_1:+64101872 Msa0563660:intron
CTTTACTACCAACTACAACT+TGG 0.457658 4_1:-64105405 None:intergenic
TTTACTGCTGTCTTCGCCAA+TGG 0.460268 4_1:+64103957 Msa0563660:CDS
CATGTCAGCACTCTTAACTT+TGG 0.464215 4_1:+64102043 Msa0563660:CDS
TCTGCAGTCATCGCTAAAAT+CGG 0.464289 4_1:-64105074 None:intergenic
GGAGATTGTTCATTCTATAG+AGG 0.466518 4_1:+64103587 Msa0563660:CDS
GCATCTCATGTTTCCTGAAA+GGG 0.466982 4_1:-64102069 None:intergenic
AGATTTAGATGTAACTCAAC+AGG 0.467158 4_1:+64102635 Msa0563660:CDS
CATCGGTGTTCTGATTTCAT+GGG 0.467349 4_1:-64102473 None:intergenic
TTAAATTTAATCTATTTGGT+TGG 0.468106 4_1:+64099550 Msa0563660:five_prime_UTR
ATACAAAGATGTGGCTGAAA+TGG 0.468585 4_1:+64099761 Msa0563660:exon
ACTCATCCAATTGCCATGTA+TGG 0.469930 4_1:+64101992 Msa0563660:CDS
TAAAGTTGTTCGGCTTCAAA+TGG 0.473516 4_1:-64105158 None:intergenic
GAAAATAAGTACCTGATCAA+TGG 0.475341 4_1:-64100091 None:intergenic
TACCAAAAGGAGGGGCCAAT+AGG 0.475422 4_1:-64099382 None:intergenic
TCTTGTAGACGGCAAATGTA+AGG 0.478724 4_1:-64101152 None:intergenic
GACAGCAGTAAAAGTAAAAG+TGG 0.479310 4_1:-64103946 None:intergenic
CCTTGGCATTCACGTTGAAA+CGG 0.483428 4_1:+64104121 Msa0563660:CDS
TATAATATATACATGGTTGA+TGG 0.485646 4_1:-64105587 None:intergenic
TAAGAGTGCTTCATTATGAA+AGG 0.486345 4_1:+64100520 Msa0563660:CDS
GACGAACCTACTTGCATGAA+TGG 0.486640 4_1:-64103816 None:intergenic
TCTAGTGTCACTTATAAATG+AGG 0.488685 4_1:+64102692 Msa0563660:CDS
CCTTGAATCCTTTCCAACTC+AGG 0.489334 4_1:-64103668 None:intergenic
TGTTTATGGTTGACACACCT+TGG 0.489912 4_1:-64104157 None:intergenic
CTTCTCAAATCAAATCGGTT+AGG 0.491529 4_1:+64101123 Msa0563660:CDS
CTTTACATGAAAGAATCAAT+GGG 0.491540 4_1:-64105438 None:intergenic
CCCTCAAATTCTGAAGATGC+AGG 0.491819 4_1:-64104032 None:intergenic
ATCCATCCATTCCACATCTT+AGG 0.492495 4_1:-64105124 None:intergenic
TCAGGCTTCTCAAATCAAAT+CGG 0.494173 4_1:+64101118 Msa0563660:CDS
TGTTGACATGGGTATTGGGT+TGG 0.494780 4_1:+64099881 Msa0563660:CDS
GAGTCCCTCAGCCATTGATC+AGG 0.496492 4_1:+64100080 Msa0563660:CDS
TGTTGATATGCTTTCTGGAA+AGG 0.498415 4_1:+64100710 Msa0563660:CDS
CCTGCATCTTCAGAATTTGA+GGG 0.498552 4_1:+64104032 Msa0563660:CDS
AGAGAGTGAAGAGAGAGTTG+TGG 0.498961 4_1:+64099848 Msa0563660:CDS
CATCTCATCGTCTCACAAAA+GGG 0.499015 4_1:+64105258 Msa0563660:three_prime_UTR
AGCATTAGCAAGTGTTTGGT+TGG 0.499734 4_1:+64103876 Msa0563660:CDS
GAAGTGAAATAAAGGAAAGT+AGG 0.500007 4_1:+64105546 Msa0563660:three_prime_UTR
GAGTCACAGAGACAACAATA+TGG 0.500051 4_1:+64099080 Msa0563660:five_prime_UTR
TTCAAGGCTTTCAGTCAAGA+TGG 0.501177 4_1:+64103684 Msa0563660:CDS
TTCAGTCAAGATGGACCACT+TGG 0.502714 4_1:+64103693 Msa0563660:CDS
TACAGCGAGAGATGAATGTT+AGG 0.506665 4_1:+64104414 Msa0563660:CDS
CATGTGAAGTTGTGTAGTCT+AGG 0.507173 4_1:+64105485 Msa0563660:three_prime_UTR
AAACTGCTAATAGGTGATCC+AGG 0.508651 4_1:+64102982 Msa0563660:CDS
GGAGAATTTGCAAAAGAAAG+AGG 0.508714 4_1:-64099141 None:intergenic
TGCTAAGCAGGTATCTTGGT+GGG 0.508731 4_1:+64101876 Msa0563660:intron
AAGACAGCATCTTATTATCA+AGG 0.509239 4_1:+64099575 Msa0563660:five_prime_UTR
TCGTCGATCTCCCGAAAACA+TGG 0.509308 4_1:+64103834 Msa0563660:CDS
AAAGGGAGGAAATATTGAAC+TGG 0.511995 4_1:+64105275 Msa0563660:three_prime_UTR
TGTTTGGTTGGCCTCATGAA+TGG 0.512361 4_1:+64103888 Msa0563660:CDS
TGCTGTTTATGAAAGATCCC+TGG 0.513895 4_1:+64105339 Msa0563660:three_prime_UTR
GTTCTAATGAGTGTAAAATA+CGG 0.515138 4_1:+64103988 Msa0563660:CDS
ATTTGAGGGTATGAATGCAT+TGG 0.519831 4_1:+64104046 Msa0563660:CDS
CAACGTGAATGCCAAGGCGT+TGG 0.521697 4_1:-64104115 None:intergenic
CAACATGGTCTTGATTGAGC+AGG 0.522436 4_1:+64104196 Msa0563660:CDS
AATCCAGAAAATACATTGAG+TGG 0.523791 4_1:+64103624 Msa0563660:CDS
TGCATCTCATGTTTCCTGAA+AGG 0.524248 4_1:-64102070 None:intergenic
AGGTTGGATTATAAAGAGAA+TGG 0.525358 4_1:+64100563 Msa0563660:CDS
GTGCAAGAGAATCAGGCAAA+GGG 0.525841 4_1:+64101079 Msa0563660:CDS
GTCAGGTAGCAGCTACCAAA+AGG 0.526621 4_1:-64099395 None:intergenic
TAGGTGATCCAGGAAGGTTT+CGG 0.529746 4_1:+64102992 Msa0563660:CDS
TGCCTAAGATGTGGAATGGA+TGG 0.529861 4_1:+64105122 Msa0563660:CDS
CTCTAGCATGAACTAACTGC+AGG 0.531152 4_1:-64099315 None:intergenic
ACAATATTTGAAAGAATACA+AGG 0.533559 4_1:-64105647 None:intergenic
GAAATCAGAACACCGATGAA+TGG 0.536195 4_1:+64102478 Msa0563660:CDS
TGATATATTTGAGCCATACA+TGG 0.537691 4_1:-64102005 None:intergenic
AATATTGCAGCGCAAGGCAA+AGG 0.537774 4_1:-64102204 None:intergenic
ATTCAAATGCCAGAAATGGA+TGG 0.537787 4_1:+64104653 Msa0563660:CDS
GTGAATCGTGCAGTAGCAGC+TGG 0.538402 4_1:+64104527 Msa0563660:CDS
GTCAGAACAGCACAGGAAAG+TGG 0.540070 4_1:+64102663 Msa0563660:CDS
CAAATAATTACTAATCTCAT+GGG 0.541408 4_1:+64103015 Msa0563660:CDS
TTGTGAAAAGTTGCCTGAGT+TGG 0.542609 4_1:+64103655 Msa0563660:CDS
TTGCTAAGCAGGTATCTTGG+TGG 0.544480 4_1:+64101875 Msa0563660:intron
GAACAATCTCCTCAACAAGA+TGG 0.546858 4_1:-64103575 None:intergenic
GTGTGTCAACCATAAACAAA+GGG 0.547911 4_1:+64104162 Msa0563660:CDS
AGATGATTACCATGAAATGA+TGG 0.547933 4_1:+64102308 Msa0563660:CDS
TGTGACTATCCATCTTGTTG+AGG 0.552354 4_1:+64103566 Msa0563660:CDS
AATTTGAGAAGCAACAAGGT+TGG 0.555193 4_1:+64100547 Msa0563660:CDS
GTATCTTGTGCAAATATGAC+AGG 0.555330 4_1:-64100669 None:intergenic
CAATATCACATCCAACGCCT+TGG 0.556712 4_1:+64104104 Msa0563660:CDS
ATTGATGAGATCACTAGAGA+TGG 0.556798 4_1:-64103727 None:intergenic
ATGTAGTTGAGAATTGAGAT+GGG 0.557487 4_1:-64099162 None:intergenic
CAAAGATGTGGCTGAAATGG+TGG 0.559449 4_1:+64099764 Msa0563660:exon
AGTAGGATCCAAGTTGTAGT+TGG 0.559658 4_1:+64105397 Msa0563660:three_prime_UTR
GCAAGCATGCTTGCCCTGAG+TGG 0.560278 4_1:-64104383 None:intergenic
AAGAGTGCTTCATTATGAAA+GGG 0.560545 4_1:+64100521 Msa0563660:CDS
ATTTGATTTGAGAAGCCTGA+AGG 0.561335 4_1:-64101115 None:intergenic
TGAAGCCGAACAACTTTACC+GGG 0.562248 4_1:+64105163 Msa0563660:CDS
CAAATGCAACTCCAAATGAA+AGG 0.563584 4_1:+64101187 Msa0563660:CDS
TTCAAATGCCAGAAATGGAT+GGG 0.564303 4_1:+64104654 Msa0563660:CDS
AAGTACCTGATCAATGGCTG+AGG 0.566544 4_1:-64100085 None:intergenic
AGCAGATGTTGCAAAATCCC+AGG 0.568472 4_1:+64102353 Msa0563660:CDS
ACAAGAATGAACAACTTTGG+AGG 0.570727 4_1:-64104290 None:intergenic
TATTCTTCCTGAAGAGGGGA+TGG 0.575235 4_1:-64100642 None:intergenic
TTAGCCATCTTCTTGTTGGG+AGG 0.575871 4_1:+64104477 Msa0563660:CDS
GAGCATATTCTTCCTGAAGA+GGG 0.577257 4_1:-64100647 None:intergenic
GCATGTGTGATGAAAGAGCT+AGG 0.585470 4_1:+64099977 Msa0563660:CDS
ATGAGAGGTTGAGATTCTCT+AGG 0.586217 4_1:-64103786 None:intergenic
ATCCAATTTCGCCATTCATG+AGG 0.589404 4_1:-64103899 None:intergenic
TGCTAATAGGTGATCCAGGA+AGG 0.592514 4_1:+64102986 Msa0563660:CDS
GGAGCATATTCTTCCTGAAG+AGG 0.594545 4_1:-64100648 None:intergenic
TTTGATTTGAGAAGCCTGAA+GGG 0.594834 4_1:-64101114 None:intergenic
ATTAGAACTGAGGAGTCCAT+TGG 0.595386 4_1:-64103973 None:intergenic
CTATCATCACAAAACCACTC+AGG 0.595668 4_1:+64104369 Msa0563660:CDS
GAAGTTAATATTGCAGCGCA+AGG 0.595844 4_1:-64102210 None:intergenic
GTCCCAAGGAAAAGGAGTTG+AGG 0.596595 4_1:+64102818 Msa0563660:CDS
ATTGCAGCGCAAGGCAAAGG+CGG 0.596929 4_1:-64102201 None:intergenic
TGAGTCATATAATATATACA+TGG 0.596965 4_1:-64105594 None:intergenic
TAAGAACGATTATGCTGTAG+AGG 0.600889 4_1:+64100611 Msa0563660:CDS
CATGAGAAATGCCTAAGATG+TGG 0.600977 4_1:+64105113 Msa0563660:CDS
CGTGCAAGAGAATCAGGCAA+AGG 0.602570 4_1:+64101078 Msa0563660:CDS
TGTATGGCTCAAATATATCA+GGG 0.605096 4_1:+64102008 Msa0563660:CDS
AAGTAGGTTCTTGGAAACAA+AGG 0.608113 4_1:+64105562 Msa0563660:three_prime_UTR
ACGGTTTCAGATTTGAACCA+AGG 0.608322 4_1:+64104140 Msa0563660:CDS
AAAAGTTGCCTGAGTTGGAA+AGG 0.608555 4_1:+64103660 Msa0563660:CDS
TACAGGTAGAATCAGAGAGA+TGG 0.608677 4_1:+64105010 Msa0563660:CDS
AGGTAGCAGCTACCAAAAGG+AGG 0.609218 4_1:-64099392 None:intergenic
TTCACTCCATTCATGCAAGT+AGG 0.609373 4_1:+64103810 Msa0563660:CDS
GAAATGCCTAAGATGTGGAA+TGG 0.609417 4_1:+64105118 Msa0563660:CDS
GGAATATGTCAGAACAGCAC+AGG 0.609824 4_1:+64102656 Msa0563660:CDS
GTTTACAAGCTACTGAGAAG+AGG 0.609832 4_1:+64099938 Msa0563660:CDS
GGTAGCAGCTACCAAAAGGA+GGG 0.612615 4_1:-64099391 None:intergenic
TATCATCACAAAACCACTCA+GGG 0.614790 4_1:+64104370 Msa0563660:CDS
CATAGAAAATATGTCCAACA+AGG 0.621926 4_1:-64102257 None:intergenic
TTTGAGAGGCCTCTAACAAG+TGG 0.622010 4_1:+64100483 Msa0563660:CDS
TCACCTAAAACACCATTCAT+CGG 0.623448 4_1:-64102490 None:intergenic
CATGCGTCGAACTGATGAGG+TGG 0.627952 4_1:-64104620 None:intergenic
GGTGTGTCAACCATAAACAA+AGG 0.628490 4_1:+64104161 Msa0563660:CDS
CCGTTTCAACGTGAATGCCA+AGG 0.630331 4_1:-64104121 None:intergenic
TGGAAGATATCTCTTGTAGA+CGG 0.637440 4_1:-64101163 None:intergenic
GCTAAGCAGGTATCTTGGTG+GGG 0.637546 4_1:+64101877 Msa0563660:intron
GAACAATTTGAGAAGCAACA+AGG 0.640709 4_1:+64100543 Msa0563660:CDS
AGTACCTGATCAATGGCTGA+GGG 0.641644 4_1:-64100084 None:intergenic
AGCATATTCTTCCTGAAGAG+GGG 0.643515 4_1:-64100646 None:intergenic
GTAGCAGCTACCAAAAGGAG+GGG 0.646610 4_1:-64099390 None:intergenic
TCTGTTGAAGATACAGGTGA+CGG 0.654876 4_1:+64103759 Msa0563660:CDS
GAGTCACATATACAAAGATG+TGG 0.657158 4_1:+64099752 Msa0563660:exon
TCTGATTTCATGGGAAACAG+TGG 0.660492 4_1:-64102464 None:intergenic
TTGTAAGTATTCATCAACAG+TGG 0.661998 4_1:+64099730 Msa0563660:five_prime_UTR
GATGTGGTTTGTGTTAGCAG+TGG 0.662109 4_1:+64104572 Msa0563660:CDS
TCTAGCATGAACTAACTGCA+GGG 0.666189 4_1:-64099314 None:intergenic
TTGCACGCAACACATTATCA+CGG 0.668088 4_1:-64101062 None:intergenic
AGCACAAGGAAAATCAGCCA+CGG 0.672595 4_1:+64104263 Msa0563660:CDS
AAACATGCGTCGAACTGATG+AGG 0.675854 4_1:-64104623 None:intergenic
AAAGATGTGGCTGAAATGGT+GGG 0.675883 4_1:+64099765 Msa0563660:exon
GAGGCCTCTAACAAGTGGTG+TGG 0.676496 4_1:+64100488 Msa0563660:CDS
CTCATCGTCTCACAAAAGGG+AGG 0.684611 4_1:+64105261 Msa0563660:three_prime_UTR
TGCAAGAGAATCAGGCAAAG+GGG 0.689158 4_1:+64101080 Msa0563660:CDS
TCGATCTCCCGAAAACATGG+AGG 0.692524 4_1:+64103837 Msa0563660:CDS
TCAAACCTTGAACACTCGCG+TGG 0.695853 4_1:+64099256 Msa0563660:five_prime_UTR
AGGGAATGCAGTTATCAACA+TGG 0.702500 4_1:+64104181 Msa0563660:CDS
GTATGGCTCAAATATATCAG+GGG 0.704366 4_1:+64102009 Msa0563660:CDS
ATGGAAGAGAAAGAACCAAG+TGG 0.711725 4_1:-64103708 None:intergenic
ATGAATGGAGTGAAGATGAG+AGG 0.715966 4_1:-64103801 None:intergenic
ACAACTTTGGAGGAAAACCG+TGG 0.762101 4_1:-64104280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCCTTTATTTTATTTTATA+AGG + chr4_1:64099475-64099494 Msa0563660:five_prime_UTR 10.0%
!!! TCCTTTATTTTATTTTATAA+GGG + chr4_1:64099476-64099495 Msa0563660:five_prime_UTR 10.0%
!! TTTCTTAAATTTAATCTATT+TGG + chr4_1:64099546-64099565 Msa0563660:five_prime_UTR 10.0%
!!! ATATAATATATTTTCTCAAC+TGG + chr4_1:64099045-64099064 Msa0563660:five_prime_UTR 15.0%
!! ACCCTTATAAAATAAAATAA+AGG - chr4_1:64099480-64099499 None:intergenic 15.0%
!! TTAAATTTAATCTATTTGGT+TGG + chr4_1:64099550-64099569 Msa0563660:five_prime_UTR 15.0%
!! AAGAAAAAGAGAAATAATTA+AGG - chr4_1:64099607-64099626 None:intergenic 15.0%
!! TAAAATCTTAATTGTTTGAT+TGG + chr4_1:64100398-64100417 Msa0563660:intron 15.0%
!! AAAATCTTAATTGTTTGATT+GGG + chr4_1:64100399-64100418 Msa0563660:intron 15.0%
!!! GTTTCTTGTTAAATTTTTTA+AGG + chr4_1:64100749-64100768 Msa0563660:intron 15.0%
!!! TTATCTTTTGTTATAGAAAT+AGG + chr4_1:64101600-64101619 Msa0563660:intron 15.0%
!!! CTTTATTTTATCTTTTGTAA+TGG - chr4_1:64103166-64103185 None:intergenic 15.0%
!!! AACTATAAATCATCAAATTT+TGG - chr4_1:64104705-64104724 None:intergenic 15.0%
!! TACTTAACAGTTTATATAAA+AGG + chr4_1:64104792-64104811 Msa0563660:intron 15.0%
!!! ATTGATAATTACATAAATTG+TGG - chr4_1:64104920-64104939 None:intergenic 15.0%
!!! ACAACATTTTTTTAGTGATT+AGG + chr4_1:64099705-64099724 Msa0563660:five_prime_UTR 20.0%
!! CAAACAATTAAATCATGAAA+AGG - chr4_1:64102922-64102941 None:intergenic 20.0%
!!! CTTTTCATGATTTAATTGTT+TGG + chr4_1:64102920-64102939 Msa0563660:intron 20.0%
!! CAAATAATTACTAATCTCAT+GGG + chr4_1:64103015-64103034 Msa0563660:CDS 20.0%
!!! TCATGTAATTTTTGAACATT+AGG + chr4_1:64103374-64103393 Msa0563660:intron 20.0%
!!! TTCATGATGCTTTTATTTTT+TGG - chr4_1:64103498-64103517 None:intergenic 20.0%
!!! ATTCTAATTGTTGATGATAA+TGG + chr4_1:64104503-64104522 Msa0563660:CDS 20.0%
!! AAATTTCCACATAAAAAATG+TGG + chr4_1:64104732-64104751 Msa0563660:intron 20.0%
!! TAAAATGATTTGAGTCAAAA+AGG - chr4_1:64105312-64105331 None:intergenic 20.0%
!! AAAAACAATATTCTAAACCA+GGG - chr4_1:64105359-64105378 None:intergenic 20.0%
!!! TAGAATATTGTTTTTGTGAT+AGG + chr4_1:64105364-64105383 Msa0563660:three_prime_UTR 20.0%
!!! AGAATATTGTTTTTGTGATA+GGG + chr4_1:64105365-64105384 Msa0563660:three_prime_UTR 20.0%
!! TATAATATATACATGGTTGA+TGG - chr4_1:64105590-64105609 None:intergenic 20.0%
!! TGAGTCATATAATATATACA+TGG - chr4_1:64105597-64105616 None:intergenic 20.0%
!!! CTATTTGTTATTATGTTGTC+AGG - chr4_1:64099415-64099434 None:intergenic 25.0%
! ATAAAGGAATGATAAGATTC+TGG - chr4_1:64099464-64099483 None:intergenic 25.0%
! ACTAGTTAGTAGTACAAAAT+TGG + chr4_1:64099658-64099677 Msa0563660:five_prime_UTR 25.0%
! AACAGTACTATCAGTATATT+GGG + chr4_1:64099821-64099840 Msa0563660:CDS 25.0%
! AAATAGACATAGCTTGAATA+TGG - chr4_1:64100035-64100054 None:intergenic 25.0%
! TAGAACAATCTTTGATCAAA+GGG - chr4_1:64100144-64100163 None:intergenic 25.0%
! CAGATGATTTATCTATTCTA+TGG - chr4_1:64100819-64100838 None:intergenic 25.0%
! ATGAACAAAGAACAAACTAA+TGG - chr4_1:64101267-64101286 None:intergenic 25.0%
! TCTTACATTATGGTATAGTT+TGG - chr4_1:64101695-64101714 None:intergenic 25.0%
!! TCAATAGTTCATGGAATTTT+TGG + chr4_1:64101792-64101811 Msa0563660:intron 25.0%
! CAAGAAACTGCAATTATAAT+TGG - chr4_1:64102444-64102463 None:intergenic 25.0%
!! TGTCTGATTTTCAACTATTT+AGG + chr4_1:64102543-64102562 Msa0563660:intron 25.0%
! TAGAACAAAGTTATGGTTTA+GGG - chr4_1:64102576-64102595 None:intergenic 25.0%
! GCAAATAATTACTAATCTCA+TGG + chr4_1:64103014-64103033 Msa0563660:CDS 25.0%
! GTTCTAATGAGTGTAAAATA+CGG + chr4_1:64103988-64104007 Msa0563660:CDS 25.0%
! TTAACAAGAATGAACAACTT+TGG - chr4_1:64104296-64104315 None:intergenic 25.0%
!! GAAAAGAAACAGAAAAGTTT+TGG + chr4_1:64105213-64105232 Msa0563660:exon 25.0%
! CAAAAACAATATTCTAAACC+AGG - chr4_1:64105360-64105379 None:intergenic 25.0%
! CTTTACATGAAAGAATCAAT+GGG - chr4_1:64105441-64105460 None:intergenic 25.0%
! ACTTTACATGAAAGAATCAA+TGG - chr4_1:64105442-64105461 None:intergenic 25.0%
! GGTATGTAATAGTTACTTAT+AGG + chr4_1:64105506-64105525 Msa0563660:three_prime_UTR 25.0%
! GTTACTTATAGGTATGTATT+AGG + chr4_1:64105517-64105536 Msa0563660:three_prime_UTR 25.0%
! ATTTTCTCAACTGGACATTT+TGG + chr4_1:64099054-64099073 Msa0563660:five_prime_UTR 30.0%
ATGTAGTTGAGAATTGAGAT+GGG - chr4_1:64099165-64099184 None:intergenic 30.0%
!!! GGTTCTGTTGTTCTTATTTT+TGG + chr4_1:64099277-64099296 Msa0563660:five_prime_UTR 30.0%
! ATCTTTTGTAGCTTTCCTAT+TGG + chr4_1:64099367-64099386 Msa0563660:five_prime_UTR 30.0%
ATCAATTTCTGTTGAGAGTT+AGG + chr4_1:64099436-64099455 Msa0563660:five_prime_UTR 30.0%
AAGACAGCATCTTATTATCA+AGG + chr4_1:64099575-64099594 Msa0563660:five_prime_UTR 30.0%
TTGTAAGTATTCATCAACAG+TGG + chr4_1:64099730-64099749 Msa0563660:five_prime_UTR 30.0%
CAACAGTACTATCAGTATAT+TGG + chr4_1:64099820-64099839 Msa0563660:CDS 30.0%
GAAAATAAGTACCTGATCAA+TGG - chr4_1:64100094-64100113 None:intergenic 30.0%
CTAGAACAATCTTTGATCAA+AGG - chr4_1:64100145-64100164 None:intergenic 30.0%
CTTTGATCAAAGATTGTTCT+AGG + chr4_1:64100143-64100162 Msa0563660:intron 30.0%
!! ACACCTTTTATCAAAAGTGT+CGG - chr4_1:64100254-64100273 None:intergenic 30.0%
!! CTTTTGATAAAAGGTGTGTT+CGG + chr4_1:64100257-64100276 Msa0563660:intron 30.0%
ATTAATTGAACGTAACCATG+TGG - chr4_1:64100291-64100310 None:intergenic 30.0%
ACGATGTCAATATGTCATAT+TGG + chr4_1:64100356-64100375 Msa0563660:intron 30.0%
!! TAAGAGTGCTTCATTATGAA+AGG + chr4_1:64100520-64100539 Msa0563660:CDS 30.0%
!! AAGAGTGCTTCATTATGAAA+GGG + chr4_1:64100521-64100540 Msa0563660:CDS 30.0%
AGGTTGGATTATAAAGAGAA+TGG + chr4_1:64100563-64100582 Msa0563660:CDS 30.0%
ATTTCTGTTGATATGCTTTC+TGG + chr4_1:64100705-64100724 Msa0563660:CDS 30.0%
CTATGGTTCAAATATCCATT+AGG - chr4_1:64100802-64100821 None:intergenic 30.0%
TACAATAGACTTAAATGTCC+CGG + chr4_1:64100850-64100869 Msa0563660:intron 30.0%
ATATTCACTTGTTCATCAAC+AGG + chr4_1:64101035-64101054 Msa0563660:intron 30.0%
AAAGGATTCAAGCAACTAAT+GGG + chr4_1:64101205-64101224 Msa0563660:CDS 30.0%
! TTTTTCCCATCAAATGTGAA+TGG - chr4_1:64101363-64101382 None:intergenic 30.0%
ACGAACAGTTGAACATAATT+AGG + chr4_1:64101386-64101405 Msa0563660:intron 30.0%
!!! CTATTTTTTATAAGCTGTCC+TGG - chr4_1:64101546-64101565 None:intergenic 30.0%
TGTTCACTCTTCTTACATTA+TGG - chr4_1:64101705-64101724 None:intergenic 30.0%
CAAGATCTTAACTATCACAA+GGG - chr4_1:64101742-64101761 None:intergenic 30.0%
TCAAGATCTTAACTATCACA+AGG - chr4_1:64101743-64101762 None:intergenic 30.0%
GAACTATTGAATTTCAGAGT+AGG - chr4_1:64101782-64101801 None:intergenic 30.0%
!! CTCTGAAATTCAATAGTTCA+TGG + chr4_1:64101783-64101802 Msa0563660:intron 30.0%
GCAATAGACAAGAAGTTAAA+AGG - chr4_1:64101859-64101878 None:intergenic 30.0%
ATTTGATGTTGAGTCATTAG+TGG + chr4_1:64101901-64101920 Msa0563660:CDS 30.0%
TGATATATTTGAGCCATACA+TGG - chr4_1:64102008-64102027 None:intergenic 30.0%
ATGTATGGCTCAAATATATC+AGG + chr4_1:64102007-64102026 Msa0563660:CDS 30.0%
TGTATGGCTCAAATATATCA+GGG + chr4_1:64102008-64102027 Msa0563660:CDS 30.0%
ACAAACTATGCTGAACATTA+AGG - chr4_1:64102131-64102150 None:intergenic 30.0%
GCTGCAATATTAACTTCAAT+TGG + chr4_1:64102216-64102235 Msa0563660:CDS 30.0%
CATAGAAAATATGTCCAACA+AGG - chr4_1:64102260-64102279 None:intergenic 30.0%
! TACTTTTGCAATTCGATTCA+CGG - chr4_1:64102286-64102305 None:intergenic 30.0%
AGATGATTACCATGAAATGA+TGG + chr4_1:64102308-64102327 Msa0563660:CDS 30.0%
! TTTTAAGCTCCATCATTTCA+TGG - chr4_1:64102320-64102339 None:intergenic 30.0%
GTAGAACAAAGTTATGGTTT+AGG - chr4_1:64102577-64102596 None:intergenic 30.0%
TGCATTGTAGAACAAAGTTA+TGG - chr4_1:64102583-64102602 None:intergenic 30.0%
! TTGTTCTACAATGCATTTTC+AGG + chr4_1:64102588-64102607 Msa0563660:intron 30.0%
! TGTTCTACAATGCATTTTCA+GGG + chr4_1:64102589-64102608 Msa0563660:intron 30.0%
AGATTTAGATGTAACTCAAC+AGG + chr4_1:64102635-64102654 Msa0563660:CDS 30.0%
!! TCTAGTGTCACTTATAAATG+AGG + chr4_1:64102692-64102711 Msa0563660:CDS 30.0%
! GTCACTTATAAATGAGGTTT+TGG + chr4_1:64102698-64102717 Msa0563660:CDS 30.0%
!!! TATAAATGAGGTTTTGGATC+AGG + chr4_1:64102704-64102723 Msa0563660:CDS 30.0%
AGTGACATGCATGATTAATA+AGG - chr4_1:64103061-64103080 None:intergenic 30.0%
TATTAATCATGCATGTCACT+TGG + chr4_1:64103061-64103080 Msa0563660:intron 30.0%
! ATTAATCATGCATGTCACTT+GGG + chr4_1:64103062-64103081 Msa0563660:intron 30.0%
TACATAAGCACTTACATGAT+AGG - chr4_1:64103133-64103152 None:intergenic 30.0%
TCAAATAAGTCAAACCAAAC+AGG + chr4_1:64103314-64103333 Msa0563660:intron 30.0%
TCAGATATCATACTATTGCA+TGG + chr4_1:64103344-64103363 Msa0563660:intron 30.0%
AATCCAGAAAATACATTGAG+TGG + chr4_1:64103624-64103643 Msa0563660:CDS 30.0%
! AAACCACTCAATGTATTTTC+TGG - chr4_1:64103630-64103649 None:intergenic 30.0%
ATTGTATCTGTTGAAGATAC+AGG + chr4_1:64103753-64103772 Msa0563660:CDS 30.0%
! TTTTACACTCATTAGAACTG+AGG - chr4_1:64103986-64104005 None:intergenic 30.0%
GAACAAGAGAACTCTAAATA+GGG + chr4_1:64104436-64104455 Msa0563660:CDS 30.0%
!!! TCTTCTCCACATTTTTTATG+TGG - chr4_1:64104741-64104760 None:intergenic 30.0%
! CATAAATTGTGGTATTTCTG+TGG - chr4_1:64104909-64104928 None:intergenic 30.0%
TACAATCATCATTGTGTTAG+AGG + chr4_1:64104948-64104967 Msa0563660:intron 30.0%
!! ACACAGAAGTATCTATAAAC+TGG + chr4_1:64105045-64105064 Msa0563660:CDS 30.0%
GGTTGATTGAAGTGAAATAA+AGG + chr4_1:64105538-64105557 Msa0563660:three_prime_UTR 30.0%
GAAGTGAAATAAAGGAAAGT+AGG + chr4_1:64105546-64105565 Msa0563660:three_prime_UTR 30.0%
AATAAAGGAAAGTAGGTTCT+TGG + chr4_1:64105553-64105572 Msa0563660:three_prime_UTR 30.0%
GGAGAATTTGCAAAAGAAAG+AGG - chr4_1:64099144-64099163 None:intergenic 35.0%
CATGTAGTTGAGAATTGAGA+TGG - chr4_1:64099166-64099185 None:intergenic 35.0%
GAGTCACATATACAAAGATG+TGG + chr4_1:64099752-64099771 Msa0563660:exon 35.0%
ATACAAAGATGTGGCTGAAA+TGG + chr4_1:64099761-64099780 Msa0563660:exon 35.0%
!! AAATGGTGGGAGAAGATTTT+AGG + chr4_1:64099778-64099797 Msa0563660:CDS 35.0%
!! AATGGTGGGAGAAGATTTTA+GGG + chr4_1:64099779-64099798 Msa0563660:CDS 35.0%
! GAGAAAGCTTTTGTTGACAT+GGG + chr4_1:64099870-64099889 Msa0563660:CDS 35.0%
! CTTTTGTTGACATGGGTATT+GGG + chr4_1:64099877-64099896 Msa0563660:CDS 35.0%
ACAATCTTTGATCAAAGGGT+TGG - chr4_1:64100140-64100159 None:intergenic 35.0%
! ATCAAAGATTGTTCTAGGCA+AGG + chr4_1:64100148-64100167 Msa0563660:intron 35.0%
GAACAATTTGAGAAGCAACA+AGG + chr4_1:64100543-64100562 Msa0563660:CDS 35.0%
AATTTGAGAAGCAACAAGGT+TGG + chr4_1:64100547-64100566 Msa0563660:CDS 35.0%
GCATAATCGTTCTTATGAAC+TGG - chr4_1:64100606-64100625 None:intergenic 35.0%
TAAGAACGATTATGCTGTAG+AGG + chr4_1:64100611-64100630 Msa0563660:CDS 35.0%
GTATCTTGTGCAAATATGAC+AGG - chr4_1:64100672-64100691 None:intergenic 35.0%
! TGTTGATATGCTTTCTGGAA+AGG + chr4_1:64100710-64100729 Msa0563660:CDS 35.0%
ACTAGTTCAGCTGAAAACTT+TGG - chr4_1:64100776-64100795 None:intergenic 35.0%
AGCTGAACTAGTATACCTAA+TGG + chr4_1:64100784-64100803 Msa0563660:intron 35.0%
ACAAATTCATCGAGTCAGAT+AGG + chr4_1:64100967-64100986 Msa0563660:intron 35.0%
!! TTTGATTTGAGAAGCCTGAA+GGG - chr4_1:64101117-64101136 None:intergenic 35.0%
!! ATTTGATTTGAGAAGCCTGA+AGG - chr4_1:64101118-64101137 None:intergenic 35.0%
TCAGGCTTCTCAAATCAAAT+CGG + chr4_1:64101118-64101137 Msa0563660:CDS 35.0%
CTTCTCAAATCAAATCGGTT+AGG + chr4_1:64101123-64101142 Msa0563660:CDS 35.0%
TGGAAGATATCTCTTGTAGA+CGG - chr4_1:64101166-64101185 None:intergenic 35.0%
! TCATTTGGAGTTGCATTTGA+TGG - chr4_1:64101186-64101205 None:intergenic 35.0%
CAAATGCAACTCCAAATGAA+AGG + chr4_1:64101187-64101206 Msa0563660:CDS 35.0%
GTTGCTTGAATCCTTTCATT+TGG - chr4_1:64101201-64101220 None:intergenic 35.0%
GAAAGGATTCAAGCAACTAA+TGG + chr4_1:64101204-64101223 Msa0563660:CDS 35.0%
CAGAACTTTAGATAAACCAG+AGG - chr4_1:64101309-64101328 None:intergenic 35.0%
AACACTCCATTCACATTTGA+TGG + chr4_1:64101354-64101373 Msa0563660:intron 35.0%
ACACTCCATTCACATTTGAT+GGG + chr4_1:64101355-64101374 Msa0563660:intron 35.0%
GAACATAATTAGGCCATGTT+TGG + chr4_1:64101396-64101415 Msa0563660:intron 35.0%
CAAATACGTCAATCCAAACA+TGG - chr4_1:64101412-64101431 None:intergenic 35.0%
TGTGAATCGTGATACTGTTT+GGG + chr4_1:64101456-64101475 Msa0563660:intron 35.0%
TATGGGAACAACTTATGACA+TGG + chr4_1:64101485-64101504 Msa0563660:intron 35.0%
TTTATTTCCATGAGCTATCC+AGG + chr4_1:64101525-64101544 Msa0563660:intron 35.0%
GTATGGCTCAAATATATCAG+GGG + chr4_1:64102009-64102028 Msa0563660:CDS 35.0%
AACTATGCTGAACATTAAGG+AGG - chr4_1:64102128-64102147 None:intergenic 35.0%
TTTAAGTCCGATTCTTACAC+AGG + chr4_1:64102166-64102185 Msa0563660:intron 35.0%
GTTTGAACCTGTGTAAGAAT+CGG - chr4_1:64102176-64102195 None:intergenic 35.0%
AAAAAGGTAGATGCATACCT+GGG - chr4_1:64102373-64102392 None:intergenic 35.0%
TAAAAAGGTAGATGCATACC+TGG - chr4_1:64102374-64102393 None:intergenic 35.0%
CTTAACCTGCACTAATTACA+CGG + chr4_1:64102412-64102431 Msa0563660:intron 35.0%
TCACCTAAAACACCATTCAT+CGG - chr4_1:64102493-64102512 None:intergenic 35.0%
! GGTGAGTTTTCTAATGTCTA+TGG + chr4_1:64102508-64102527 Msa0563660:intron 35.0%
GATCAGGCAAAGATTGAATT+TGG + chr4_1:64102720-64102739 Msa0563660:CDS 35.0%
! TTTTGACATACGCTCGATTT+TGG + chr4_1:64102767-64102786 Msa0563660:CDS 35.0%
! CTATTTTCTGATAAGTCCCA+AGG + chr4_1:64102804-64102823 Msa0563660:CDS 35.0%
TTCTTGATGCACTTTGATCA+TGG + chr4_1:64102856-64102875 Msa0563660:intron 35.0%
AATTGTTTGGCAATCACAGT+TGG + chr4_1:64102933-64102952 Msa0563660:intron 35.0%
CAAGTTCCTAAACTGCTAAT+AGG + chr4_1:64102973-64102992 Msa0563660:CDS 35.0%
TATCTGACTAAAAGCCTGTT+TGG - chr4_1:64103331-64103350 None:intergenic 35.0%
GGAGATTGTTCATTCTATAG+AGG + chr4_1:64103587-64103606 Msa0563660:CDS 35.0%
ATTGATGAGATCACTAGAGA+TGG - chr4_1:64103730-64103749 None:intergenic 35.0%
ACTAAGCATTAGCAAGTGTT+TGG + chr4_1:64103872-64103891 Msa0563660:CDS 35.0%
TTTGCAAGTGAACCAAAAAC+TGG + chr4_1:64103921-64103940 Msa0563660:CDS 35.0%
TTGCAAGTGAACCAAAAACT+GGG + chr4_1:64103922-64103941 Msa0563660:CDS 35.0%
GACAGCAGTAAAAGTAAAAG+TGG - chr4_1:64103949-64103968 None:intergenic 35.0%
! ATTTGAGGGTATGAATGCAT+TGG + chr4_1:64104046-64104065 Msa0563660:CDS 35.0%
! ACTTTTGCTCTAATAGGTCT+TGG - chr4_1:64104080-64104099 None:intergenic 35.0%
! TGAGACACTTTTGCTCTAAT+AGG - chr4_1:64104086-64104105 None:intergenic 35.0%
GTGTGTCAACCATAAACAAA+GGG + chr4_1:64104162-64104181 Msa0563660:CDS 35.0%
! AACTGCATTCCCTTTGTTTA+TGG - chr4_1:64104174-64104193 None:intergenic 35.0%
ACAAGAATGAACAACTTTGG+AGG - chr4_1:64104293-64104312 None:intergenic 35.0%
!!! AGTGGTTTTGTGATGATAGT+AGG - chr4_1:64104368-64104387 None:intergenic 35.0%
TATCATCACAAAACCACTCA+GGG + chr4_1:64104370-64104389 Msa0563660:CDS 35.0%
GGAACAAGAGAACTCTAAAT+AGG + chr4_1:64104435-64104454 Msa0563660:CDS 35.0%
! GGCTAAGAGACAAATTTTGA+AGG - chr4_1:64104463-64104482 None:intergenic 35.0%
GGATATTCAAATGCCAGAAA+TGG + chr4_1:64104649-64104668 Msa0563660:CDS 35.0%
ATTCAAATGCCAGAAATGGA+TGG + chr4_1:64104653-64104672 Msa0563660:CDS 35.0%
TTCAAATGCCAGAAATGGAT+GGG + chr4_1:64104654-64104673 Msa0563660:CDS 35.0%
ATCTACATAGAAGACACACA+AGG + chr4_1:64104862-64104881 Msa0563660:intron 35.0%
ATCATCATTGTGTTAGAGGT+TGG + chr4_1:64104952-64104971 Msa0563660:intron 35.0%
!!! TTCAACAGTTTTGAAGCTAC+AGG + chr4_1:64104993-64105012 Msa0563660:intron 35.0%
TAAAGTTGTTCGGCTTCAAA+TGG - chr4_1:64105161-64105180 None:intergenic 35.0%
!! CTGTTTCTTTTCAAGATGAC+AGG - chr4_1:64105205-64105224 None:intergenic 35.0%
AAAGGGAGGAAATATTGAAC+TGG + chr4_1:64105275-64105294 Msa0563660:three_prime_UTR 35.0%
CTTTACTACCAACTACAACT+TGG - chr4_1:64105408-64105427 None:intergenic 35.0%
AAGTAGGTTCTTGGAAACAA+AGG + chr4_1:64105562-64105581 Msa0563660:three_prime_UTR 35.0%
GAGTCACAGAGACAACAATA+TGG + chr4_1:64099080-64099099 Msa0563660:five_prime_UTR 40.0%
TCTAGCATGAACTAACTGCA+GGG - chr4_1:64099317-64099336 None:intergenic 40.0%
AAAGATGTGGCTGAAATGGT+GGG + chr4_1:64099765-64099784 Msa0563660:exon 40.0%
!! TGGGAGAAGATTTTAGGGAA+TGG + chr4_1:64099784-64099803 Msa0563660:CDS 40.0%
! GGAGAAAGCTTTTGTTGACA+TGG + chr4_1:64099869-64099888 Msa0563660:CDS 40.0%
! GCTTTTGTTGACATGGGTAT+TGG + chr4_1:64099876-64099895 Msa0563660:CDS 40.0%
GTTTACAAGCTACTGAGAAG+AGG + chr4_1:64099938-64099957 Msa0563660:CDS 40.0%
TGAAAGAGCTAGGATTGTTC+AGG + chr4_1:64099987-64100006 Msa0563660:CDS 40.0%
!! GCACCGACACTTTTGATAAA+AGG + chr4_1:64100248-64100267 Msa0563660:intron 40.0%
! CAGAAAGAACAGCTTTTGAG+AGG + chr4_1:64100469-64100488 Msa0563660:CDS 40.0%
CGATTATGCTGTAGAGGAAT+TGG + chr4_1:64100617-64100636 Msa0563660:CDS 40.0%
AGCATATTCTTCCTGAAGAG+GGG - chr4_1:64100649-64100668 None:intergenic 40.0%
GAGCATATTCTTCCTGAAGA+GGG - chr4_1:64100650-64100669 None:intergenic 40.0%
! GATATGCTTTCTGGAAAGGT+AGG + chr4_1:64100714-64100733 Msa0563660:intron 40.0%
! AACGGATTCAGATTATCACC+GGG - chr4_1:64100871-64100890 None:intergenic 40.0%
! GAACGGATTCAGATTATCAC+CGG - chr4_1:64100872-64100891 None:intergenic 40.0%
AAGCTTGAGCAAAGAGTGAA+CGG - chr4_1:64100889-64100908 None:intergenic 40.0%
TCACTCTTTGCTCAAGCTTT+AGG + chr4_1:64100890-64100909 Msa0563660:intron 40.0%
CACTCTTTGCTCAAGCTTTA+GGG + chr4_1:64100891-64100910 Msa0563660:intron 40.0%
TGTCTCTACAGTTGTACACA+AGG - chr4_1:64100950-64100969 None:intergenic 40.0%
TCGAGTCAGATAGGACTATA+TGG + chr4_1:64100976-64100995 Msa0563660:intron 40.0%
TTGCACGCAACACATTATCA+CGG - chr4_1:64101065-64101084 None:intergenic 40.0%
TCTTGTAGACGGCAAATGTA+AGG - chr4_1:64101155-64101174 None:intergenic 40.0%
! TATAGTTTAGCTTACGCCTC+TGG + chr4_1:64101290-64101309 Msa0563660:intron 40.0%
! GAATGGAGTGTTTAGTTGCT+TGG - chr4_1:64101346-64101365 None:intergenic 40.0%
CAAACAGTATCACGATTCAC+AGG - chr4_1:64101457-64101476 None:intergenic 40.0%
CTGTGAATCGTGATACTGTT+TGG + chr4_1:64101455-64101474 Msa0563660:intron 40.0%
ATACTGTTTGGGAGAGCTTA+TGG + chr4_1:64101467-64101486 Msa0563660:intron 40.0%
TACTGTTTGGGAGAGCTTAT+GGG + chr4_1:64101468-64101487 Msa0563660:intron 40.0%
CTTCTTGTCTATTGCTAAGC+AGG + chr4_1:64101864-64101883 Msa0563660:intron 40.0%
CTATTGCTAAGCAGGTATCT+TGG + chr4_1:64101872-64101891 Msa0563660:intron 40.0%
ACTCATCCAATTGCCATGTA+TGG + chr4_1:64101992-64102011 Msa0563660:CDS 40.0%
TTTGAGCCATACATGGCAAT+TGG - chr4_1:64102001-64102020 None:intergenic 40.0%
CATGTCAGCACTCTTAACTT+TGG + chr4_1:64102043-64102062 Msa0563660:CDS 40.0%
! TTAACTTTGGTGACCCTTTC+AGG + chr4_1:64102056-64102075 Msa0563660:CDS 40.0%
GCATCTCATGTTTCCTGAAA+GGG - chr4_1:64102072-64102091 None:intergenic 40.0%
TGCATCTCATGTTTCCTGAA+AGG - chr4_1:64102073-64102092 None:intergenic 40.0%
CTGAACATTAAGGAGGACAA+AGG - chr4_1:64102121-64102140 None:intergenic 40.0%
GAAGTTAATATTGCAGCGCA+AGG - chr4_1:64102213-64102232 None:intergenic 40.0%
!! CTTGTTATTGCTCTCCTTGT+TGG + chr4_1:64102243-64102262 Msa0563660:CDS 40.0%
! TTTTGCAATTCGATTCACGG+TGG - chr4_1:64102283-64102302 None:intergenic 40.0%
TCTGATTTCATGGGAAACAG+TGG - chr4_1:64102467-64102486 None:intergenic 40.0%
! CATCGGTGTTCTGATTTCAT+GGG - chr4_1:64102476-64102495 None:intergenic 40.0%
! TCATCGGTGTTCTGATTTCA+TGG - chr4_1:64102477-64102496 None:intergenic 40.0%
GAAATCAGAACACCGATGAA+TGG + chr4_1:64102478-64102497 Msa0563660:CDS 40.0%
! ACACCGATGAATGGTGTTTT+AGG + chr4_1:64102487-64102506 Msa0563660:CDS 40.0%
AGGGATGATGCATATGCTTA+TGG + chr4_1:64102608-64102627 Msa0563660:intron 40.0%
TCTGATAAGTCCCAAGGAAA+AGG + chr4_1:64102810-64102829 Msa0563660:CDS 40.0%
! TACCTCAACTCCTTTTCCTT+GGG - chr4_1:64102823-64102842 None:intergenic 40.0%
! TTACCTCAACTCCTTTTCCT+TGG - chr4_1:64102824-64102843 None:intergenic 40.0%
GGATCACCTATTAGCAGTTT+AGG - chr4_1:64102982-64103001 None:intergenic 40.0%
AAACTGCTAATAGGTGATCC+AGG + chr4_1:64102982-64103001 Msa0563660:CDS 40.0%
ATTATTTGCCGAAACCTTCC+TGG - chr4_1:64103003-64103022 None:intergenic 40.0%
AAGCTATCCTAGAGAGTTCA+TGG + chr4_1:64103223-64103242 Msa0563660:intron 40.0%
! GTTTTGCAGTTCACAGACAA+AGG + chr4_1:64103534-64103553 Msa0563660:intron 40.0%
TGTGACTATCCATCTTGTTG+AGG + chr4_1:64103566-64103585 Msa0563660:CDS 40.0%
GAACAATCTCCTCAACAAGA+TGG - chr4_1:64103578-64103597 None:intergenic 40.0%
! TCAGGCAACTTTTCACAACA+GGG - chr4_1:64103653-64103672 None:intergenic 40.0%
TTGTGAAAAGTTGCCTGAGT+TGG + chr4_1:64103655-64103674 Msa0563660:CDS 40.0%
! AAAAGTTGCCTGAGTTGGAA+AGG + chr4_1:64103660-64103679 Msa0563660:CDS 40.0%
TTCAAGGCTTTCAGTCAAGA+TGG + chr4_1:64103684-64103703 Msa0563660:CDS 40.0%
ATGGAAGAGAAAGAACCAAG+TGG - chr4_1:64103711-64103730 None:intergenic 40.0%
TCTGTTGAAGATACAGGTGA+CGG + chr4_1:64103759-64103778 Msa0563660:CDS 40.0%
ATGAGAGGTTGAGATTCTCT+AGG - chr4_1:64103789-64103808 None:intergenic 40.0%
ATGAATGGAGTGAAGATGAG+AGG - chr4_1:64103804-64103823 None:intergenic 40.0%
TTCACTCCATTCATGCAAGT+AGG + chr4_1:64103810-64103829 Msa0563660:CDS 40.0%
! TACCAGTTCCTCCATGTTTT+CGG - chr4_1:64103848-64103867 None:intergenic 40.0%
AAACATGGAGGAACTGGTAT+TGG + chr4_1:64103849-64103868 Msa0563660:CDS 40.0%
AGCATTAGCAAGTGTTTGGT+TGG + chr4_1:64103876-64103895 Msa0563660:CDS 40.0%
ATCCAATTTCGCCATTCATG+AGG - chr4_1:64103902-64103921 None:intergenic 40.0%
! GTAAAAGTGGACCCAGTTTT+TGG - chr4_1:64103936-64103955 None:intergenic 40.0%
ATTAGAACTGAGGAGTCCAT+TGG - chr4_1:64103976-64103995 None:intergenic 40.0%
!!! CTGAAGATGCAGGTTTTGTT+TGG - chr4_1:64104025-64104044 None:intergenic 40.0%
ACCTGCATCTTCAGAATTTG+AGG + chr4_1:64104031-64104050 Msa0563660:CDS 40.0%
CCTGCATCTTCAGAATTTGA+GGG + chr4_1:64104032-64104051 Msa0563660:CDS 40.0%
ACGGTTTCAGATTTGAACCA+AGG + chr4_1:64104140-64104159 Msa0563660:CDS 40.0%
TGTTTATGGTTGACACACCT+TGG - chr4_1:64104160-64104179 None:intergenic 40.0%
GGTGTGTCAACCATAAACAA+AGG + chr4_1:64104161-64104180 Msa0563660:CDS 40.0%
AGGGAATGCAGTTATCAACA+TGG + chr4_1:64104181-64104200 Msa0563660:CDS 40.0%
TCTTGATTGAGCAGGAAGTT+TGG + chr4_1:64104204-64104223 Msa0563660:CDS 40.0%
!!! CTCATTTTTTCGACAGCACA+AGG + chr4_1:64104249-64104268 Msa0563660:CDS 40.0%
CTATCATCACAAAACCACTC+AGG + chr4_1:64104369-64104388 Msa0563660:CDS 40.0%
TACAGCGAGAGATGAATGTT+AGG + chr4_1:64104414-64104433 Msa0563660:CDS 40.0%
TCTCTTAGCCATCTTCTTGT+TGG + chr4_1:64104473-64104492 Msa0563660:CDS 40.0%
CTCTTAGCCATCTTCTTGTT+GGG + chr4_1:64104474-64104493 Msa0563660:CDS 40.0%
! TTTTCCTCCCAACAAGAAGA+TGG - chr4_1:64104484-64104503 None:intergenic 40.0%
!! GCTGGTGCTTTGAAAAAGTA+TGG + chr4_1:64104545-64104564 Msa0563660:CDS 40.0%
! GAAAAAGTATGGAGCAGATG+TGG + chr4_1:64104556-64104575 Msa0563660:CDS 40.0%
ATTGCATACCCATCCATTTC+TGG - chr4_1:64104665-64104684 None:intergenic 40.0%
TACAGGTAGAATCAGAGAGA+TGG + chr4_1:64105010-64105029 Msa0563660:CDS 40.0%
TCTGCAGTCATCGCTAAAAT+CGG - chr4_1:64105077-64105096 None:intergenic 40.0%
GATGACTGCAGATGTAATTC+AGG + chr4_1:64105085-64105104 Msa0563660:CDS 40.0%
CATGAGAAATGCCTAAGATG+TGG + chr4_1:64105113-64105132 Msa0563660:CDS 40.0%
GAAATGCCTAAGATGTGGAA+TGG + chr4_1:64105118-64105137 Msa0563660:CDS 40.0%
ATCCATCCATTCCACATCTT+AGG - chr4_1:64105127-64105146 None:intergenic 40.0%
TTGAAGCCGAACAACTTTAC+CGG + chr4_1:64105162-64105181 Msa0563660:CDS 40.0%
AACTTCCCGGTAAAGTTGTT+CGG - chr4_1:64105171-64105190 None:intergenic 40.0%
AACTTTACCGGGAAGTTTCT+CGG + chr4_1:64105174-64105193 Msa0563660:CDS 40.0%
CATCTCATCGTCTCACAAAA+GGG + chr4_1:64105258-64105277 Msa0563660:three_prime_UTR 40.0%
! TGCTGTTTATGAAAGATCCC+TGG + chr4_1:64105339-64105358 Msa0563660:three_prime_UTR 40.0%
AGTAGGATCCAAGTTGTAGT+TGG + chr4_1:64105397-64105416 Msa0563660:three_prime_UTR 40.0%
CATGTGAAGTTGTGTAGTCT+AGG + chr4_1:64105485-64105504 Msa0563660:three_prime_UTR 40.0%
CTCTAGCATGAACTAACTGC+AGG - chr4_1:64099318-64099337 None:intergenic 45.0%
CAAAGATGTGGCTGAAATGG+TGG + chr4_1:64099764-64099783 Msa0563660:exon 45.0%
AGAGAGTGAAGAGAGAGTTG+TGG + chr4_1:64099848-64099867 Msa0563660:CDS 45.0%
!! TGTTGACATGGGTATTGGGT+TGG + chr4_1:64099881-64099900 Msa0563660:CDS 45.0%
GTTGGACTGTAGTGTCTTTG+TGG + chr4_1:64099899-64099918 Msa0563660:CDS 45.0%
GCATGTGTGATGAAAGAGCT+AGG + chr4_1:64099977-64099996 Msa0563660:CDS 45.0%
AGTACCTGATCAATGGCTGA+GGG - chr4_1:64100087-64100106 None:intergenic 45.0%
AAGTACCTGATCAATGGCTG+AGG - chr4_1:64100088-64100107 None:intergenic 45.0%
CAATTCGACTCTTGCAGATC+AGG + chr4_1:64100193-64100212 Msa0563660:intron 45.0%
TTTGAGAGGCCTCTAACAAG+TGG + chr4_1:64100483-64100502 Msa0563660:CDS 45.0%
! TATGCCACACCACTTGTTAG+AGG - chr4_1:64100495-64100514 None:intergenic 45.0%
TATTCTTCCTGAAGAGGGGA+TGG - chr4_1:64100645-64100664 None:intergenic 45.0%
GGAGCATATTCTTCCTGAAG+AGG - chr4_1:64100651-64100670 None:intergenic 45.0%
GTGCAAGAGAATCAGGCAAA+GGG + chr4_1:64101079-64101098 Msa0563660:CDS 45.0%
TGCAAGAGAATCAGGCAAAG+GGG + chr4_1:64101080-64101099 Msa0563660:CDS 45.0%
TTGCTAAGCAGGTATCTTGG+TGG + chr4_1:64101875-64101894 Msa0563660:intron 45.0%
TGCTAAGCAGGTATCTTGGT+GGG + chr4_1:64101876-64101895 Msa0563660:intron 45.0%
GGAAACATGAGATGCATTGC+AGG + chr4_1:64102077-64102096 Msa0563660:CDS 45.0%
AATATTGCAGCGCAAGGCAA+AGG - chr4_1:64102207-64102226 None:intergenic 45.0%
GGAGCTTAAAAAACGTGCAG+AGG + chr4_1:64102329-64102348 Msa0563660:CDS 45.0%
AGCAGATGTTGCAAAATCCC+AGG + chr4_1:64102353-64102372 Msa0563660:CDS 45.0%
CAAGTCCGTGTAATTAGTGC+AGG - chr4_1:64102420-64102439 None:intergenic 45.0%
GGAATATGTCAGAACAGCAC+AGG + chr4_1:64102656-64102675 Msa0563660:CDS 45.0%
TGCTAATAGGTGATCCAGGA+AGG + chr4_1:64102986-64103005 Msa0563660:CDS 45.0%
TAGGTGATCCAGGAAGGTTT+CGG + chr4_1:64102992-64103011 Msa0563660:CDS 45.0%
! CATGTCACTTGGGCAATGTT+TGG + chr4_1:64103072-64103091 Msa0563660:intron 45.0%
GACATGTCCATGAACTCTCT+AGG - chr4_1:64103233-64103252 None:intergenic 45.0%
! CTCAGGCAACTTTTCACAAC+AGG - chr4_1:64103654-64103673 None:intergenic 45.0%
CCTTGAATCCTTTCCAACTC+AGG - chr4_1:64103671-64103690 None:intergenic 45.0%
! CCTGAGTTGGAAAGGATTCA+AGG + chr4_1:64103668-64103687 Msa0563660:CDS 45.0%
TTCAGTCAAGATGGACCACT+TGG + chr4_1:64103693-64103712 Msa0563660:CDS 45.0%
GACGAACCTACTTGCATGAA+TGG - chr4_1:64103819-64103838 None:intergenic 45.0%
! ACCAGTTCCTCCATGTTTTC+GGG - chr4_1:64103847-64103866 None:intergenic 45.0%
!! TGTTTGGTTGGCCTCATGAA+TGG + chr4_1:64103888-64103907 Msa0563660:CDS 45.0%
TTTACTGCTGTCTTCGCCAA+TGG + chr4_1:64103957-64103976 Msa0563660:CDS 45.0%
! CCCTCAAATTCTGAAGATGC+AGG - chr4_1:64104035-64104054 None:intergenic 45.0%
CAATATCACATCCAACGCCT+TGG + chr4_1:64104104-64104123 Msa0563660:CDS 45.0%
CCTTGGCATTCACGTTGAAA+CGG + chr4_1:64104121-64104140 Msa0563660:CDS 45.0%
! CAACATGGTCTTGATTGAGC+AGG + chr4_1:64104196-64104215 Msa0563660:CDS 45.0%
AGCACAAGGAAAATCAGCCA+CGG + chr4_1:64104263-64104282 Msa0563660:CDS 45.0%
! ACAACTTTGGAGGAAAACCG+TGG - chr4_1:64104283-64104302 None:intergenic 45.0%
TTAGCCATCTTCTTGTTGGG+AGG + chr4_1:64104477-64104496 Msa0563660:CDS 45.0%
! GATGTGGTTTGTGTTAGCAG+TGG + chr4_1:64104572-64104591 Msa0563660:CDS 45.0%
AAACATGCGTCGAACTGATG+AGG - chr4_1:64104626-64104645 None:intergenic 45.0%
TCAGTTCGACGCATGTTTCA+TGG + chr4_1:64104628-64104647 Msa0563660:CDS 45.0%
TGCCTAAGATGTGGAATGGA+TGG + chr4_1:64105122-64105141 Msa0563660:CDS 45.0%
TGAAGCCGAACAACTTTACC+GGG + chr4_1:64105163-64105182 Msa0563660:CDS 45.0%
GGAAAAACCGAGAAACTTCC+CGG - chr4_1:64105184-64105203 None:intergenic 45.0%
! CCTTTTGTGAGACGATGAGA+TGG - chr4_1:64105260-64105279 None:intergenic 45.0%
CCATCTCATCGTCTCACAAA+AGG + chr4_1:64105257-64105276 Msa0563660:three_prime_UTR 45.0%
! TGATAGGGAGTGTGCATAGT+AGG + chr4_1:64105380-64105399 Msa0563660:three_prime_UTR 45.0%
!! ATTTATTAAACAAATTAAAA+AGG - chr4_1:64102389-64102408 None:intergenic 5.0%
!!! TTTTAATTTGTTTAATAAAT+TGG + chr4_1:64102389-64102408 Msa0563660:intron 5.0%
TCAAACCTTGAACACTCGCG+TGG + chr4_1:64099256-64099275 Msa0563660:five_prime_UTR 50.0%
! TTCCTATTGGCCCCTCCTTT+TGG + chr4_1:64099380-64099399 Msa0563660:five_prime_UTR 50.0%
TACCAAAAGGAGGGGCCAAT+AGG - chr4_1:64099385-64099404 None:intergenic 50.0%
GTAGCAGCTACCAAAAGGAG+GGG - chr4_1:64099393-64099412 None:intergenic 50.0%
GGTAGCAGCTACCAAAAGGA+GGG - chr4_1:64099394-64099413 None:intergenic 50.0%
AGGTAGCAGCTACCAAAAGG+AGG - chr4_1:64099395-64099414 None:intergenic 50.0%
GTCAGGTAGCAGCTACCAAA+AGG - chr4_1:64099398-64099417 None:intergenic 50.0%
ATCAATGGCTGAGGGACTCT+TGG - chr4_1:64100079-64100098 None:intergenic 50.0%
TCTAGGCAAGGTTCGAAAGC+TGG + chr4_1:64100160-64100179 Msa0563660:intron 50.0%
ACGACACTGACACGTCAACA+CGG - chr4_1:64100334-64100353 None:intergenic 50.0%
GTGTTGCGTGCAAGAGAATC+AGG + chr4_1:64101072-64101091 Msa0563660:CDS 50.0%
CGTGCAAGAGAATCAGGCAA+AGG + chr4_1:64101078-64101097 Msa0563660:CDS 50.0%
!!! GGGTTTTAACTGCACCCTTC+AGG + chr4_1:64101100-64101119 Msa0563660:CDS 50.0%
AAGCTGTCCTGGATAGCTCA+TGG - chr4_1:64101535-64101554 None:intergenic 50.0%
GCTAAGCAGGTATCTTGGTG+GGG + chr4_1:64101877-64101896 Msa0563660:intron 50.0%
GTCAGAACAGCACAGGAAAG+TGG + chr4_1:64102663-64102682 Msa0563660:CDS 50.0%
GTCCCAAGGAAAAGGAGTTG+AGG + chr4_1:64102818-64102837 Msa0563660:CDS 50.0%
TCGTCGATCTCCCGAAAACA+TGG + chr4_1:64103834-64103853 Msa0563660:CDS 50.0%
TCGATCTCCCGAAAACATGG+AGG + chr4_1:64103837-64103856 Msa0563660:CDS 50.0%
TCCCGAAAACATGGAGGAAC+TGG + chr4_1:64103843-64103862 Msa0563660:CDS 50.0%
GGCCTCATGAATGGCGAAAT+TGG + chr4_1:64103897-64103916 Msa0563660:CDS 50.0%
CCGTTTCAACGTGAATGCCA+AGG - chr4_1:64104124-64104143 None:intergenic 50.0%
CTCATCGTCTCACAAAAGGG+AGG + chr4_1:64105261-64105280 Msa0563660:three_prime_UTR 50.0%
CAGAACCACGCGAGTGTTCA+AGG - chr4_1:64099264-64099283 None:intergenic 55.0%
GAGTCCCTCAGCCATTGATC+AGG + chr4_1:64100080-64100099 Msa0563660:CDS 55.0%
!! TGTTCGGTGTCTGCACCACA+TGG + chr4_1:64100273-64100292 Msa0563660:intron 55.0%
CGACACTGACACGTCAACAC+GGG - chr4_1:64100333-64100352 None:intergenic 55.0%
GAGGCCTCTAACAAGTGGTG+TGG + chr4_1:64100488-64100507 Msa0563660:CDS 55.0%
ATTGGAGCCATCCCCTCTTC+AGG + chr4_1:64100635-64100654 Msa0563660:CDS 55.0%
ATTGCAGCGCAAGGCAAAGG+CGG - chr4_1:64102204-64102223 None:intergenic 55.0%
CAACGTGAATGCCAAGGCGT+TGG - chr4_1:64104118-64104137 None:intergenic 55.0%
GTGAATCGTGCAGTAGCAGC+TGG + chr4_1:64104527-64104546 Msa0563660:CDS 55.0%
CATGCGTCGAACTGATGAGG+TGG - chr4_1:64104623-64104642 None:intergenic 55.0%
GCAAGCATGCTTGCCCTGAG+TGG - chr4_1:64104386-64104405 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 64099040 64105662 64099040 ID=Msa0563660;Name=Msa0563660
chr4_1 mRNA 64099040 64105662 64099040 ID=Msa0563660-mRNA-1;Parent=Msa0563660;Name=Msa0563660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=729|1|1|1|1|1|10|448|970
chr4_1 exon 64099040 64100101 64099040 ID=Msa0563660-mRNA-1:exon:20427;Parent=Msa0563660-mRNA-1
chr4_1 exon 64100450 64100731 64100450 ID=Msa0563660-mRNA-1:exon:20428;Parent=Msa0563660-mRNA-1
chr4_1 exon 64101057 64101226 64101057 ID=Msa0563660-mRNA-1:exon:20429;Parent=Msa0563660-mRNA-1
chr4_1 exon 64101886 64102098 64101886 ID=Msa0563660-mRNA-1:exon:20430;Parent=Msa0563660-mRNA-1
chr4_1 exon 64102188 64102374 64102188 ID=Msa0563660-mRNA-1:exon:20431;Parent=Msa0563660-mRNA-1
chr4_1 exon 64102457 64102508 64102457 ID=Msa0563660-mRNA-1:exon:20432;Parent=Msa0563660-mRNA-1
chr4_1 exon 64102610 64102839 64102610 ID=Msa0563660-mRNA-1:exon:20433;Parent=Msa0563660-mRNA-1
chr4_1 exon 64102952 64103050 64102952 ID=Msa0563660-mRNA-1:exon:20434;Parent=Msa0563660-mRNA-1
chr4_1 exon 64103543 64104675 64103543 ID=Msa0563660-mRNA-1:exon:20435;Parent=Msa0563660-mRNA-1
chr4_1 exon 64105001 64105662 64105001 ID=Msa0563660-mRNA-1:exon:20436;Parent=Msa0563660-mRNA-1
chr4_1 five_prime_UTR 64099040 64099768 64099040 ID=Msa0563660-mRNA-1:five_prime_utr;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64099769 64100101 64099769 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64100450 64100731 64100450 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64101057 64101226 64101057 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64101886 64102098 64101886 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64102188 64102374 64102188 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64102457 64102508 64102457 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64102610 64102839 64102610 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64102952 64103050 64102952 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64103543 64104675 64103543 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 CDS 64105001 64105214 64105001 ID=Msa0563660-mRNA-1:cds;Parent=Msa0563660-mRNA-1
chr4_1 three_prime_UTR 64105215 64105662 64105215 ID=Msa0563660-mRNA-1:three_prime_utr;Parent=Msa0563660-mRNA-1
Gene Sequence

>Msa0563660

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGAGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCCAAGAGTCCCTCAGCCATTGATCAGAGAACTTTTGCTAGCTACACAGAAAGAACAGCTTTTGAGAGGCCTCTAACAAGTGGTGTGGCATATGCTGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATAAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGTGGGGTATTTGATGTTGAGTCATTAGTGGAGAAATTACTTGAGCAACTTGCTAGCAAGCGAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATATATCAGGGGACGTGTTCAATCATGTCAGCACTCTTAACTTTGGTGACCCTTTCAGGAAACATGAGATGCATTGCAGGTTCAAACAGAAACCGCCTTTGCCTTGCGCTGCAATATTAACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACCGTGAATCGAATTGCAAAAGTAGAAGATGATTACCATGAAATGATGGAGCTTAAAAAACGTGCAGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTTGCCACTGTTTCCCATGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAAGCAGTGCTTTTTGACATACGCTCGATTTTGGATGATGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTTGAGTTGGCAGCTTATGTGTCAGATCAAGTTCCTAAACTGCTAATAGGTGATCCAGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAACTCAATTAAGTTCACAGACAAAGGACACATTTTTGTGACTATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCCCTGTTGTGAAAAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGATGGACCACTTGGTTCTTTCTCTTCCATCTCTAGTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGACGGTATTCCTAGAGAATCTCAACCTCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCCCGAAAACATGGAGGAACTGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGCAAGTGAACCAAAAACTGGGTCCACTTTTACTTTTACTGCTGTCTTCGCCAATGGACTCCTCAGTTCTAATGAGTGTAAAATACGGCAAATCAACGACCAAACAAAACCTGCATCTTCAGAATTTGAGGGTATGAATGCATTGGTTATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCAATATCACATCCAACGCCTTGGCATTCACGTTGAAACGGTTTCAGATTTGAACCAAGGTGTGTCAACCATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGAGCAGGAAGTTTGGTATAGAGATTCAAGCATGTCGTCTCATTTTTTCGACAGCACAAGGAAAATCAGCCACGGTTTTCCTCCAAAGTTGTTCATTCTTGTTAATTCTAGTAACTCTTCTAAAACTAGCAGTGTAACGTCAGATGTTGATAATCCTACTATCATCACAAAACCACTCAGGGCAAGCATGCTTGCTGCGTCACTACAGCGAGAGATGAATGTTAGGAACAAGAGAACTCTAAATAGGGACCTTCAAAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTTGATGATAATGGCGTGAATCGTGCAGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCATCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAGGTAGAATCAGAGAGATGGAACAGAATCTAAACACAGAAGTATCTATAAACTGGCATGTGCCGATTTTAGCGATGACTGCAGATGTAATTCAGGCTACACATGAGAAATGCCTAAGATGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCCGAACAACTTTACCGGGAAGTTTCTCGGTTTTTCCTGTCATCTTGA
Protein sequence

>Msa0563660

MWLKWWEKILGNGYKINQQYYQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLEQLASKRSVIVNVYDTTNHTHPIAMYGSNISGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPLPCAAILTSIGILVIALLVGHIFYATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDQVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGFKAFSQDGPLGSFSSISSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECKIRQINDQTKPASSEFEGMNALVIDPRPIRAKVSQYHIQRLGIHVETVSDLNQGVSTINKGNAVINMVLIEQEVWYRDSSMSSHFFDSTRKISHGFPPKLFILVNSSNSSKTSSVTSDVDNPTIITKPLRASMLAASLQREMNVRNKRTLNRDLQNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATGRIREMEQNLNTEVSINWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFLSS*