AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106510 MtrunA17_Chr7g0238961 82.696 497 61 4 6 478 260 755 0.0 804
Msa1106510 MtrunA17_Chr7g0238961 66.871 163 53 1 6 167 3 165 6.36e-67 228
Msa1106510 MtrunA17_Chr7g0238971 85.412 473 65 4 1 470 1 472 0.0 801
Msa1106510 MtrunA17_Chr7g0239921 71.875 480 128 5 1 478 27 501 0.0 662
Msa1106510 MtrunA17_Chr7g0239731 55.602 482 197 6 7 478 4 478 4.72e-168 482
Msa1106510 MtrunA17_Chr7g0239851 56.042 480 196 8 8 478 5 478 4.87e-167 479
Msa1106510 MtrunA17_Chr7g0239891 54.143 519 183 13 1 477 1 506 1.12e-162 469
Msa1106510 MtrunA17_Chr7g0239911 54.797 469 181 11 1 448 1 459 4.41e-162 466
Msa1106510 MtrunA17_Chr7g0239831 54.435 496 197 12 1 478 1 485 4.90e-154 447
Msa1106510 MtrunA17_Chr7g0239841 56.193 436 178 8 1 428 1 431 3.59e-152 440
Msa1106510 MtrunA17_Chr3g0078631 54.037 483 175 11 1 472 10 456 1.53e-150 437
Msa1106510 MtrunA17_Chr7g0239901 55.372 484 198 10 9 477 35 515 2.97e-146 428
Msa1106510 MtrunA17_Chr7g0241421 40.808 495 256 11 4 476 6 485 1.05e-110 339
Msa1106510 MtrunA17_Chr7g0241331 41.870 492 242 9 13 471 5 485 1.43e-107 328
Msa1106510 MtrunA17_Chr7g0239791 58.824 289 105 4 191 478 3 278 2.42e-105 315
Msa1106510 MtrunA17_Chr7g0239791 30.000 220 126 9 14 229 70 265 1.64e-16 79.7
Msa1106510 MtrunA17_Chr7g0239861 46.172 431 181 11 68 477 4 404 8.44e-105 318
Msa1106510 MtrunA17_Chr7g0241161 41.020 490 207 13 1 471 1 427 1.62e-96 297
Msa1106510 MtrunA17_Chr7g0237451 38.124 501 263 14 1 478 1 477 2.56e-96 298
Msa1106510 MtrunA17_Chr7g0241431 39.792 480 227 9 24 474 7 453 9.69e-96 296
Msa1106510 MtrunA17_Chr7g0241431 27.778 234 148 8 11 230 219 445 2.38e-12 68.9
Msa1106510 MtrunA17_Chr7g0218371 37.103 504 236 14 1 478 1 449 3.74e-83 264
Msa1106510 MtrunA17_Chr7g0241251 37.013 462 245 12 1 448 1 430 6.34e-83 263
Msa1106510 MtrunA17_Chr7g0241261 35.897 468 240 12 11 463 8 430 1.61e-82 262
Msa1106510 MtrunA17_Chr7g0241261 32.314 229 116 12 255 465 9 216 2.60e-15 77.8
Msa1106510 MtrunA17_Chr1g0166321 34.591 477 258 8 3 455 5 451 2.82e-82 263
Msa1106510 MtrunA17_Chr3g0110221 41.114 377 166 9 91 458 1 330 3.08e-77 246
Msa1106510 MtrunA17_Chr3g0110221 31.343 201 100 8 15 203 137 311 3.17e-13 71.2
Msa1106510 MtrunA17_Chr7g0241201 41.484 364 195 7 1 349 1 361 1.73e-73 236
Msa1106510 MtrunA17_Chr4g0008511 34.921 504 289 13 6 478 2 497 4.69e-73 239
Msa1106510 MtrunA17_Chr7g0241271 42.560 336 170 9 2 321 4 332 4.20e-66 216
Msa1106510 MtrunA17_Chr7g0241271 30.531 226 136 7 254 465 13 231 8.18e-14 72.4
Msa1106510 MtrunA17_Chr7g0239761 44.097 288 125 5 1 282 14 271 2.78e-65 212
Msa1106510 MtrunA17_Chr7g0239741 47.471 257 94 7 235 478 2 230 9.69e-63 203
Msa1106510 MtrunA17_Chr7g0239741 24.434 221 137 7 12 229 24 217 2.00e-12 67.0
Msa1106510 MtrunA17_Chr7g0241291 38.788 330 163 9 161 473 11 318 1.67e-60 201
Msa1106510 MtrunA17_Chr7g0239751 51.887 212 86 2 10 217 30 229 6.88e-57 188
Msa1106510 MtrunA17_Chr4g0007631 30.171 527 298 14 1 477 1 507 1.27e-56 196
Msa1106510 MtrunA17_Chr4g0008481 31.549 523 294 18 6 477 3 512 3.42e-54 190
Msa1106510 MtrunA17_Chr7g0241361 44.156 231 108 2 12 242 16 225 1.72e-49 170
Msa1106510 MtrunA17_Chr4g0007251 30.545 514 288 16 1 477 1 482 1.74e-49 176
Msa1106510 MtrunA17_Chr7g0241511 35.014 357 168 8 158 467 14 353 1.99e-49 173
Msa1106510 MtrunA17_Chr7g0241511 26.047 215 145 8 6 214 99 305 1.19e-12 69.3
Msa1106510 MtrunA17_Chr4g0007341 30.992 484 275 18 5 453 2 461 2.91e-49 175
Msa1106510 MtrunA17_Chr7g0263451 42.205 263 140 4 213 467 2 260 3.82e-49 169
Msa1106510 MtrunA17_Chr4g0007271 28.627 517 288 14 1 477 1 476 4.27e-49 175
Msa1106510 MtrunA17_Chr7g0241311 39.914 233 131 3 10 235 8 238 1.49e-47 164
Msa1106510 MtrunA17_Chr7g0241311 42.466 73 37 1 255 322 10 82 2.91e-11 63.5
Msa1106510 MtrunA17_Chr7g0241351 44.175 206 104 3 12 213 16 214 3.41e-45 157
Msa1106510 MtrunA17_Chr7g0241351 30.769 169 105 5 255 417 16 178 3.35e-13 68.9
Msa1106510 MtrunA17_Chr7g0241211 38.208 212 105 4 256 467 1 186 1.33e-37 136
Msa1106510 MtrunA17_Chr7g0241211 28.440 218 117 9 15 229 3 184 3.42e-16 77.0
Msa1106510 MtrunA17_Chr2g0291981 49.231 130 65 1 2 131 4 132 1.30e-35 129
Msa1106510 MtrunA17_Chr2g0291981 42.353 85 43 2 255 334 14 97 1.70e-13 67.8
Msa1106510 MtrunA17_Chr7g0241231 45.588 136 74 0 11 146 6 141 3.08e-32 120
Msa1106510 MtrunA17_Chr7g0241231 41.176 85 44 2 255 334 7 90 1.18e-11 62.8
Msa1106510 MtrunA17_Chr8g0345251 26.053 380 243 11 114 471 15 378 1.09e-27 114
Msa1106510 MtrunA17_Chr7g0241321 38.710 186 102 3 300 473 5 190 5.95e-27 107
Msa1106510 MtrunA17_Chr8g0355351 31.855 248 137 8 3 235 8 238 2.26e-24 101
Msa1106510 MtrunA17_Chr4g0007231 31.799 239 118 10 6 214 3 226 3.96e-24 100
Msa1106510 MtrunA17_Chr7g0237481 36.842 152 79 2 252 401 11 147 5.71e-24 98.6
Msa1106510 MtrunA17_Chr7g0241171 37.725 167 68 3 306 467 8 143 3.46e-23 95.5
Msa1106510 MtrunA17_Chr1g0212741 30.859 256 137 8 1 234 1 238 1.15e-22 96.7
Msa1106510 MtrunA17_Chr1g0212741 31.304 230 132 10 255 465 11 233 4.59e-21 92.0
Msa1106510 MtrunA17_Chr4g0007321 32.168 286 150 9 213 467 11 283 3.62e-22 96.3
Msa1106510 MtrunA17_Chr4g0007321 30.165 242 126 10 10 228 59 280 2.90e-14 73.2
Msa1106510 MtrunA17_Chr7g0241181 46.316 95 51 0 255 349 14 108 3.75e-22 91.7
Msa1106510 MtrunA17_Chr1g0150201 40.645 155 82 7 91 240 1 150 5.37e-22 92.4
Msa1106510 MtrunA17_Chr7g0229201 30.400 250 139 6 5 234 3 237 7.19e-22 94.4
Msa1106510 MtrunA17_Chr0c02g0489781 30.400 250 139 6 5 234 3 237 7.19e-22 94.4
Msa1106510 MtrunA17_Chr1g0150211 35.537 121 76 1 256 374 1 121 9.48e-21 88.6
Msa1106510 MtrunA17_Chr4g0008491 25.879 398 193 10 89 477 6 310 1.40e-18 86.3
Msa1106510 MtrunA17_Chr7g0241301 35.537 121 58 1 1 121 1 101 1.39e-15 73.2
Msa1106510 MtrunA17_Chr2g0292001 32.278 158 100 2 302 452 7 164 1.82e-15 75.1
Msa1106510 MtrunA17_Chr7g0263461 66.000 50 17 0 6 55 33 82 2.79e-14 68.6
Msa1106510 MtrunA17_Chr1g0212771 28.638 213 103 9 1 179 1 198 1.59e-13 69.3
Msa1106510 MtrunA17_Chr2g0291991 36.975 119 67 3 179 290 2 119 3.36e-13 66.2
Msa1106510 MtrunA17_Chr1g0212761 36.090 133 71 5 3 133 2 122 4.31e-12 63.5
Msa1106510 MtrunA17_Chr7g0241191 30.469 128 85 3 91 215 1 127 4.63e-11 61.2
Msa1106510 MtrunA17_Chr7g0241501 58.696 46 19 0 18 63 1 46 5.18e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106510 AT5G01120.1 32.186 494 284 12 13 470 10 488 5.53e-62 210
Msa1106510 AT5G01120.1 27.119 236 143 7 7 228 262 482 2.64e-11 66.2
Msa1106510 AT3G09140.2 31.977 516 287 17 1 473 1 495 5.82e-61 207
Msa1106510 AT5G01150.1 30.518 521 274 13 7 477 4 486 7.82e-58 199
Msa1106510 AT3G09140.1 30.331 544 287 18 1 473 1 523 5.42e-56 195
Msa1106510 AT5G01130.1 30.722 485 286 12 7 478 4 451 1.23e-55 192
Msa1106510 AT3G09110.1 35.329 334 197 7 14 338 11 334 1.42e-54 186
Msa1106510 AT5G01140.1 28.807 486 301 9 7 478 4 458 4.01e-54 189
Msa1106510 AT5G43240.1 32.072 502 272 16 13 467 10 489 2.64e-53 187
Msa1106510 AT5G43240.3 32.072 502 272 16 13 467 10 489 2.64e-53 187
Msa1106510 AT5G43240.4 32.072 502 272 16 13 467 10 489 2.64e-53 187
Msa1106510 AT3G09120.1 36.196 326 164 9 11 309 5 313 2.08e-49 172
Msa1106510 AT3G09120.1 26.840 231 142 7 255 465 6 229 3.20e-12 67.8
Msa1106510 AT5G37320.1 29.216 510 274 18 13 473 10 481 2.16e-40 152
Msa1106510 AT5G43240.2 28.659 328 194 10 167 467 31 345 5.79e-18 85.9

Find 116 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.115220 7_3:-46457654 Msa1106510:CDS
AAACTAGCTTCAGAATAATT+TGG 0.145102 7_3:+46457763 None:intergenic
TTTAGTCTGTTCAAGGAATT+TGG 0.198450 7_3:-46458051 Msa1106510:CDS
CTTCCCCAAGGATTTGTTAA+TGG 0.236044 7_3:-46458138 Msa1106510:CDS
ATTGAATAATTAACTTATAT+AGG 0.299160 7_3:+46456545 None:intergenic
TTCACATGTTACTACTTTAG+TGG 0.317291 7_3:-46458255 Msa1106510:CDS
GTTGTGTGTTTCAAGATTCT+TGG 0.331141 7_3:-46456939 Msa1106510:three_prime_UTR
ATCATTAGAATTGTCTTGTA+TGG 0.334047 7_3:+46456384 None:intergenic
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7_3:+46457267 None:intergenic
TCATCTTAAGTTTATTCTCT+TGG 0.351245 7_3:+46456464 None:intergenic
AATTGAAATATTCAATTTGA+AGG 0.357086 7_3:-46456525 Msa1106510:three_prime_UTR
ACTGACTCCAATTTCAGCTT+TGG 0.361128 7_3:-46457274 Msa1106510:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7_3:+46458569 None:intergenic
CTGACTCCAATTTCAGCTTT+GGG 0.368692 7_3:-46457273 Msa1106510:CDS
GAAAATGAATTTATCTAATG+TGG 0.375710 7_3:-46457367 Msa1106510:CDS
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7_3:+46457483 None:intergenic
TTCTGTGATGTTGAAATTAG+TGG 0.377162 7_3:-46457792 Msa1106510:CDS
CAAGATTCTTGGAGGAAAGT+TGG 0.386700 7_3:-46456928 Msa1106510:three_prime_UTR
ATCTGCCTTAACAAATGGTT+TGG 0.386717 7_3:-46457015 Msa1106510:CDS
CCTGTATAATCAATACAGTT+TGG 0.387847 7_3:+46458075 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7_3:-46458472 Msa1106510:CDS
TACTCCTCTTAATGACTTGA+AGG 0.393876 7_3:-46457232 Msa1106510:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7_3:-46458489 Msa1106510:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7_3:-46458537 Msa1106510:CDS
TACACCATTAACAAATCCTT+GGG 0.417579 7_3:+46458134 None:intergenic
TACAGGCTTTAGTCTGTTCA+AGG 0.417707 7_3:-46458058 Msa1106510:CDS
TCAACATCTGCCTTAACAAA+TGG 0.422887 7_3:-46457020 Msa1106510:CDS
GCTTTCCAAGTCAACTTTGA+CGG 0.423899 7_3:-46457862 Msa1106510:CDS
GGAAGACGTGTAAGGAAAAC+TGG 0.424578 7_3:+46458156 None:intergenic
TCACATGTTAACTGAAGTTA+AGG 0.428371 7_3:-46456991 Msa1106510:CDS
GCAGTGTCTTAGCATATTGA+AGG 0.430801 7_3:-46457054 Msa1106510:intron
AAGGAAAGGGAGGGTAAGTG+AGG 0.434062 7_3:-46456711 Msa1106510:three_prime_UTR
CCAAACTGTATTGATTATAC+AGG 0.434124 7_3:-46458075 Msa1106510:CDS
AACCATCCCTTGAGAGATCA+AGG 0.434730 7_3:-46457821 Msa1106510:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7_3:+46458327 None:intergenic
TTTGGAGAGAATTGTTCCTT+TGG 0.438718 7_3:-46457636 Msa1106510:CDS
CAAATCCGTCAAAGTTGACT+TGG 0.454131 7_3:+46457857 None:intergenic
GAATTATGTATAATATTTGA+AGG 0.454315 7_3:-46456665 Msa1106510:three_prime_UTR
GTGAGCCAAACCATTTGTTA+AGG 0.458136 7_3:+46457010 None:intergenic
TCTTAAGTTTATTCTCTTGG+AGG 0.463929 7_3:+46456467 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7_3:-46457995 Msa1106510:intron
TGATTGCTTAACTTTAACTG+TGG 0.471996 7_3:+46457513 None:intergenic
CTACACCATTAACAAATCCT+TGG 0.474205 7_3:+46458133 None:intergenic
TAACATGTCACCAACCATCA+TGG 0.482373 7_3:+46456413 None:intergenic
AAAATGAATTTATCTAATGT+GGG 0.483658 7_3:-46457366 Msa1106510:CDS
TAAATATTTGATATCAAAAG+AGG 0.486512 7_3:-46457568 Msa1106510:CDS
GGTGTAGATAAGAGTTATGC+TGG 0.489254 7_3:-46457399 Msa1106510:CDS
ATATAGGAATAATGCTATGA+TGG 0.490851 7_3:+46456561 None:intergenic
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7_3:-46457672 Msa1106510:CDS
CTTCCTTCAACAAAGAGAAA+AGG 0.499359 7_3:-46456730 Msa1106510:three_prime_UTR
TTCTCTTTGTTGAAGGAAGT+AGG 0.507781 7_3:+46456734 None:intergenic
GATTGCTTAACTTTAACTGT+GGG 0.508677 7_3:+46457514 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.510599 7_3:+46457814 None:intergenic
TAACATGTGAAGTACTTTGT+TGG 0.513317 7_3:+46458267 None:intergenic
CTAATTCACTTGACTTGTGA+TGG 0.514210 7_3:-46456441 Msa1106510:three_prime_UTR
AGTTATCACAATCGGCATCA+AGG 0.517950 7_3:-46457205 Msa1106510:CDS
AGGAAAGGGAGGGTAAGTGA+GGG 0.517985 7_3:-46456710 Msa1106510:three_prime_UTR
AACAAGGTATTGTATGCTCA+AGG 0.521643 7_3:-46457726 Msa1106510:CDS
ATCCTTGGGGAAGACGTGTA+AGG 0.524160 7_3:+46458148 None:intergenic
CATTAAGAGGAGTATTCAAT+CGG 0.524642 7_3:+46457241 None:intergenic
TATCAAAAGAGGCTAAGAAC+AGG 0.528682 7_3:-46457557 Msa1106510:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7_3:-46457724 Msa1106510:CDS
TTCAACAAAGAGAAAAGGAA+AGG 0.533734 7_3:-46456725 Msa1106510:three_prime_UTR
TCTGTAGCAAAATACATAGC+TGG 0.536774 7_3:+46457315 None:intergenic
AACATGTCACCAACCATCAT+GGG 0.538064 7_3:+46456414 None:intergenic
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7_3:-46458532 Msa1106510:CDS
TCCTGCTGAGGGTTATGTCA+AGG 0.546242 7_3:-46457340 Msa1106510:CDS
TTGTGATGGTTGACCCATGA+TGG 0.547254 7_3:-46456427 Msa1106510:three_prime_UTR
ATATTACCAATTCTTGAACC+TGG 0.551456 7_3:-46457489 Msa1106510:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7_3:+46457819 None:intergenic
TTTAACTGTGGGGCAATGCA+AGG 0.554812 7_3:+46457525 None:intergenic
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7_3:-46458019 Msa1106510:CDS
AGCAAAACTAAATAAAACTT+CGG 0.564575 7_3:+46456822 None:intergenic
AGGAATAATGCTATGATGGT+TGG 0.565124 7_3:+46456565 None:intergenic
CCATGATATTCATGAACACC+AGG 0.566428 7_3:+46457471 None:intergenic
CCCTTGACATAACCCTCAGC+AGG 0.568072 7_3:+46457339 None:intergenic
TTCCTTACACGTCTTCCCCA+AGG 0.572053 7_3:-46458150 Msa1106510:CDS
TCAACAAAGAGAAAAGGAAA+GGG 0.572351 7_3:-46456724 Msa1106510:three_prime_UTR
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7_3:-46458536 Msa1106510:CDS
TGAAGTGATCATCTCGCGAT+AGG 0.575378 7_3:+46458227 None:intergenic
AGGAAAGTTGGCAATGGACA+AGG 0.577053 7_3:-46456916 Msa1106510:three_prime_UTR
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7_3:-46458463 Msa1106510:CDS
TGTTCCTTTGGAAGCATCAG+CGG 0.578272 7_3:-46457624 Msa1106510:CDS
CCTGGTGTTCATGAATATCA+TGG 0.582427 7_3:-46457471 Msa1106510:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7_3:+46458474 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7_3:-46458449 Msa1106510:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7_3:-46458435 Msa1106510:CDS
TCTTGGAGGAAAGTTGGCAA+TGG 0.590375 7_3:-46456922 Msa1106510:three_prime_UTR
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7_3:-46457725 Msa1106510:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7_3:-46458450 Msa1106510:CDS
ACAAAGAGAAAAGGAAAGGG+AGG 0.592938 7_3:-46456721 Msa1106510:three_prime_UTR
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7_3:-46458373 Msa1106510:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7_3:-46456988 Msa1106510:CDS
AAAGCTGAAATTGGAGTCAG+TGG 0.596483 7_3:+46457276 None:intergenic
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7_3:+46458464 None:intergenic
GTGTGTTTCAAGATTCTTGG+AGG 0.597851 7_3:-46456936 Msa1106510:three_prime_UTR
GATGGTTGACCCATGATGGT+TGG 0.599070 7_3:-46456423 Msa1106510:three_prime_UTR
CCTGCTGAGGGTTATGTCAA+GGG 0.608099 7_3:-46457339 Msa1106510:CDS
GCATAACTCTTATCTACACC+AGG 0.610698 7_3:+46457402 None:intergenic
TTTAAGAAAATCAGATAACA+AGG 0.611339 7_3:-46457742 Msa1106510:CDS
TAATGTGGGGAATCCTGCTG+AGG 0.611592 7_3:-46457352 Msa1106510:CDS
TAGTTCTTATCAGTTTAACA+TGG 0.612767 7_3:-46458628 Msa1106510:exon
AAATGAATTTATCTAATGTG+GGG 0.617529 7_3:-46457365 Msa1106510:CDS
CAAAGAGAAAAGGAAAGGGA+GGG 0.626163 7_3:-46456720 Msa1106510:three_prime_UTR
GATAAACCTTGATCTCTCAA+GGG 0.631373 7_3:+46457815 None:intergenic
GATAAACATAAATGTCGATG+TGG 0.637729 7_3:-46458195 Msa1106510:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7_3:+46457660 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7_3:-46458601 Msa1106510:CDS
CAATCCGCTGATGCTTCCAA+AGG 0.653547 7_3:+46457620 None:intergenic
AATGTGGGGAATCCTGCTGA+GGG 0.657173 7_3:-46457351 Msa1106510:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7_3:-46458406 Msa1106510:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7_3:-46458390 Msa1106510:CDS
ATTGCTTAACTTTAACTGTG+GGG 0.673850 7_3:+46457515 None:intergenic
TATCACAATCGGCATCAAGG+AGG 0.731245 7_3:-46457202 Msa1106510:intron
GCTGCAACCAATCAACTCAG+CGG 0.749919 7_3:-46458334 Msa1106510:CDS
ACACCATTAACAAATCCTTG+GGG 0.760186 7_3:+46458135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATATAAATTTTACTA+TGG + chr7_3:46457883-46457902 None:intergenic 10.0%
!! ATTGAATAATTAACTTATAT+AGG + chr7_3:46458513-46458532 None:intergenic 10.0%
!!! ATCTAATATAAATTTTACTA+TGG + chr7_3:46457883-46457902 None:intergenic 10.0%
!! ATTGAATAATTAACTTATAT+AGG + chr7_3:46458513-46458532 None:intergenic 10.0%
!! TAAATATTTGATATCAAAAG+AGG - chr7_3:46457487-46457506 Msa1106510:CDS 15.0%
!! AAAATGAATTTATCTAATGT+GGG - chr7_3:46457689-46457708 Msa1106510:CDS 15.0%
!! GAATTATGTATAATATTTGA+AGG - chr7_3:46458390-46458409 Msa1106510:CDS 15.0%
!! AATTGAAATATTCAATTTGA+AGG - chr7_3:46458530-46458549 Msa1106510:CDS 15.0%
!! TAAATATTTGATATCAAAAG+AGG - chr7_3:46457487-46457506 Msa1106510:CDS 15.0%
!! AAAATGAATTTATCTAATGT+GGG - chr7_3:46457689-46457708 Msa1106510:CDS 15.0%
!! GAATTATGTATAATATTTGA+AGG - chr7_3:46458390-46458409 Msa1106510:CDS 15.0%
!! AATTGAAATATTCAATTTGA+AGG - chr7_3:46458530-46458549 Msa1106510:CDS 15.0%
!! TTTAAGAAAATCAGATAACA+AGG - chr7_3:46457313-46457332 Msa1106510:CDS 20.0%
!! GAAAATGAATTTATCTAATG+TGG - chr7_3:46457688-46457707 Msa1106510:CDS 20.0%
!! AAATGAATTTATCTAATGTG+GGG - chr7_3:46457690-46457709 Msa1106510:CDS 20.0%
!! AGCAAAACTAAATAAAACTT+CGG + chr7_3:46458236-46458255 None:intergenic 20.0%
!!! GTAGTAAAGTGAAATTTTAT+AGG - chr7_3:46458297-46458316 Msa1106510:CDS 20.0%
!! TTTAAGAAAATCAGATAACA+AGG - chr7_3:46457313-46457332 Msa1106510:CDS 20.0%
!! GAAAATGAATTTATCTAATG+TGG - chr7_3:46457688-46457707 Msa1106510:CDS 20.0%
!! AAATGAATTTATCTAATGTG+GGG - chr7_3:46457690-46457709 Msa1106510:CDS 20.0%
!! AGCAAAACTAAATAAAACTT+CGG + chr7_3:46458236-46458255 None:intergenic 20.0%
!!! GTAGTAAAGTGAAATTTTAT+AGG - chr7_3:46458297-46458316 Msa1106510:CDS 20.0%
! TAGTTCTTATCAGTTTAACA+TGG - chr7_3:46456427-46456446 Msa1106510:three_prime_UTR 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7_3:46456491-46456510 Msa1106510:three_prime_UTR 25.0%
!! AAACTAGCTTCAGAATAATT+TGG + chr7_3:46457295-46457314 None:intergenic 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7_3:46457379-46457398 Msa1106510:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7_3:46457380-46457399 Msa1106510:CDS 25.0%
! AAGGAAAAAGTTATCACAAT+CGG - chr7_3:46457842-46457861 Msa1106510:CDS 25.0%
! ATATAGGAATAATGCTATGA+TGG + chr7_3:46458497-46458516 None:intergenic 25.0%
! TCATCTTAAGTTTATTCTCT+TGG + chr7_3:46458594-46458613 None:intergenic 25.0%
! ATCATTAGAATTGTCTTGTA+TGG + chr7_3:46458674-46458693 None:intergenic 25.0%
! TAGTTCTTATCAGTTTAACA+TGG - chr7_3:46456427-46456446 Msa1106510:three_prime_UTR 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7_3:46456491-46456510 Msa1106510:three_prime_UTR 25.0%
!! AAACTAGCTTCAGAATAATT+TGG + chr7_3:46457295-46457314 None:intergenic 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7_3:46457379-46457398 Msa1106510:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7_3:46457380-46457399 Msa1106510:CDS 25.0%
! AAGGAAAAAGTTATCACAAT+CGG - chr7_3:46457842-46457861 Msa1106510:CDS 25.0%
! ATATAGGAATAATGCTATGA+TGG + chr7_3:46458497-46458516 None:intergenic 25.0%
! TCATCTTAAGTTTATTCTCT+TGG + chr7_3:46458594-46458613 None:intergenic 25.0%
! ATCATTAGAATTGTCTTGTA+TGG + chr7_3:46458674-46458693 None:intergenic 25.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7_3:46456489-46456508 None:intergenic 30.0%
! TAACATGTGAAGTACTTTGT+TGG + chr7_3:46456791-46456810 None:intergenic 30.0%
TTCACATGTTACTACTTTAG+TGG - chr7_3:46456800-46456819 Msa1106510:three_prime_UTR 30.0%
GATAAACATAAATGTCGATG+TGG - chr7_3:46456860-46456879 Msa1106510:three_prime_UTR 30.0%
TACACCATTAACAAATCCTT+GGG + chr7_3:46456924-46456943 None:intergenic 30.0%
CCTGTATAATCAATACAGTT+TGG + chr7_3:46456983-46457002 None:intergenic 30.0%
!! CCAAACTGTATTGATTATAC+AGG - chr7_3:46456980-46456999 Msa1106510:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG - chr7_3:46457004-46457023 Msa1106510:CDS 30.0%
TTCTGTGATGTTGAAATTAG+TGG - chr7_3:46457263-46457282 Msa1106510:CDS 30.0%
ATTGCTTAACTTTAACTGTG+GGG + chr7_3:46457543-46457562 None:intergenic 30.0%
GATTGCTTAACTTTAACTGT+GGG + chr7_3:46457544-46457563 None:intergenic 30.0%
TGATTGCTTAACTTTAACTG+TGG + chr7_3:46457545-46457564 None:intergenic 30.0%
ATATTACCAATTCTTGAACC+TGG - chr7_3:46457566-46457585 Msa1106510:CDS 30.0%
! TGTGTTCAAATTTTCAAACC+TGG - chr7_3:46457635-46457654 Msa1106510:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7_3:46457748-46457767 Msa1106510:CDS 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG + chr7_3:46457817-46457836 None:intergenic 30.0%
! TTTTCCTTCAAGTCATTAAG+AGG + chr7_3:46457830-46457849 None:intergenic 30.0%
TTATTTAAATGTTCTACGCG+TGG - chr7_3:46457917-46457936 Msa1106510:intron 30.0%
TATTTAAATGTTCTACGCGT+GGG - chr7_3:46457918-46457937 Msa1106510:intron 30.0%
TCACATGTTAACTGAAGTTA+AGG - chr7_3:46458064-46458083 Msa1106510:CDS 30.0%
! TTTCCTTTTCTCTTTGTTGA+AGG + chr7_3:46458331-46458350 None:intergenic 30.0%
TTCAACAAAGAGAAAAGGAA+AGG - chr7_3:46458330-46458349 Msa1106510:CDS 30.0%
TCAACAAAGAGAAAAGGAAA+GGG - chr7_3:46458331-46458350 Msa1106510:CDS 30.0%
!!! TCTTGGAGGTATTTTTAGAT+AGG + chr7_3:46458577-46458596 None:intergenic 30.0%
TCTTAAGTTTATTCTCTTGG+AGG + chr7_3:46458591-46458610 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7_3:46456489-46456508 None:intergenic 30.0%
! TAACATGTGAAGTACTTTGT+TGG + chr7_3:46456791-46456810 None:intergenic 30.0%
TTCACATGTTACTACTTTAG+TGG - chr7_3:46456800-46456819 Msa1106510:three_prime_UTR 30.0%
GATAAACATAAATGTCGATG+TGG - chr7_3:46456860-46456879 Msa1106510:three_prime_UTR 30.0%
TACACCATTAACAAATCCTT+GGG + chr7_3:46456924-46456943 None:intergenic 30.0%
CCTGTATAATCAATACAGTT+TGG + chr7_3:46456983-46457002 None:intergenic 30.0%
!! CCAAACTGTATTGATTATAC+AGG - chr7_3:46456980-46456999 Msa1106510:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG - chr7_3:46457004-46457023 Msa1106510:CDS 30.0%
TTCTGTGATGTTGAAATTAG+TGG - chr7_3:46457263-46457282 Msa1106510:CDS 30.0%
ATTGCTTAACTTTAACTGTG+GGG + chr7_3:46457543-46457562 None:intergenic 30.0%
GATTGCTTAACTTTAACTGT+GGG + chr7_3:46457544-46457563 None:intergenic 30.0%
TGATTGCTTAACTTTAACTG+TGG + chr7_3:46457545-46457564 None:intergenic 30.0%
ATATTACCAATTCTTGAACC+TGG - chr7_3:46457566-46457585 Msa1106510:CDS 30.0%
! TGTGTTCAAATTTTCAAACC+TGG - chr7_3:46457635-46457654 Msa1106510:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7_3:46457748-46457767 Msa1106510:CDS 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG + chr7_3:46457817-46457836 None:intergenic 30.0%
! TTTTCCTTCAAGTCATTAAG+AGG + chr7_3:46457830-46457849 None:intergenic 30.0%
TTATTTAAATGTTCTACGCG+TGG - chr7_3:46457917-46457936 Msa1106510:intron 30.0%
TATTTAAATGTTCTACGCGT+GGG - chr7_3:46457918-46457937 Msa1106510:intron 30.0%
TCACATGTTAACTGAAGTTA+AGG - chr7_3:46458064-46458083 Msa1106510:CDS 30.0%
! TTTCCTTTTCTCTTTGTTGA+AGG + chr7_3:46458331-46458350 None:intergenic 30.0%
TTCAACAAAGAGAAAAGGAA+AGG - chr7_3:46458330-46458349 Msa1106510:CDS 30.0%
TCAACAAAGAGAAAAGGAAA+GGG - chr7_3:46458331-46458350 Msa1106510:CDS 30.0%
!!! TCTTGGAGGTATTTTTAGAT+AGG + chr7_3:46458577-46458596 None:intergenic 30.0%
TCTTAAGTTTATTCTCTTGG+AGG + chr7_3:46458591-46458610 None:intergenic 30.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7_3:46456566-46456585 Msa1106510:three_prime_UTR 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7_3:46456606-46456625 Msa1106510:three_prime_UTR 35.0%
AAACTCACTCTATAGAAGTG+TGG - chr7_3:46456649-46456668 Msa1106510:three_prime_UTR 35.0%
ACACCATTAACAAATCCTTG+GGG + chr7_3:46456923-46456942 None:intergenic 35.0%
CTACACCATTAACAAATCCT+TGG + chr7_3:46456925-46456944 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7_3:46457024-46457043 Msa1106510:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7_3:46457060-46457079 Msa1106510:intron 35.0%
! CTAGCACAAAACCTTTTCTT+TGG + chr7_3:46457074-46457093 None:intergenic 35.0%
GATAAACCTTGATCTCTCAA+GGG + chr7_3:46457243-46457262 None:intergenic 35.0%
AGATAAACCTTGATCTCTCA+AGG + chr7_3:46457244-46457263 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7_3:46457329-46457348 Msa1106510:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7_3:46457330-46457349 Msa1106510:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7_3:46457383-46457402 Msa1106510:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7_3:46457401-46457420 Msa1106510:CDS 35.0%
TTTGGAGAGAATTGTTCCTT+TGG - chr7_3:46457419-46457438 Msa1106510:CDS 35.0%
TATCAAAAGAGGCTAAGAAC+AGG - chr7_3:46457498-46457517 Msa1106510:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7_3:46457743-46457762 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7_3:46457791-46457810 None:intergenic 35.0%
TACTCCTCTTAATGACTTGA+AGG - chr7_3:46457823-46457842 Msa1106510:CDS 35.0%
ATTTAAATGTTCTACGCGTG+GGG - chr7_3:46457919-46457938 Msa1106510:intron 35.0%
TCAACATCTGCCTTAACAAA+TGG - chr7_3:46458035-46458054 Msa1106510:CDS 35.0%
ATCTGCCTTAACAAATGGTT+TGG - chr7_3:46458040-46458059 Msa1106510:CDS 35.0%
CATGTTAACTGAAGTTAAGG+AGG - chr7_3:46458067-46458086 Msa1106510:CDS 35.0%
GTTGTGTGTTTCAAGATTCT+TGG - chr7_3:46458116-46458135 Msa1106510:CDS 35.0%
TTCTCTTTGTTGAAGGAAGT+AGG + chr7_3:46458324-46458343 None:intergenic 35.0%
CTTCCTTCAACAAAGAGAAA+AGG - chr7_3:46458325-46458344 Msa1106510:CDS 35.0%
AGGAATAATGCTATGATGGT+TGG + chr7_3:46458493-46458512 None:intergenic 35.0%
!! CTAATTCACTTGACTTGTGA+TGG - chr7_3:46458614-46458633 Msa1106510:exon 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7_3:46456566-46456585 Msa1106510:three_prime_UTR 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7_3:46456606-46456625 Msa1106510:three_prime_UTR 35.0%
AAACTCACTCTATAGAAGTG+TGG - chr7_3:46456649-46456668 Msa1106510:three_prime_UTR 35.0%
ACACCATTAACAAATCCTTG+GGG + chr7_3:46456923-46456942 None:intergenic 35.0%
CTACACCATTAACAAATCCT+TGG + chr7_3:46456925-46456944 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7_3:46457024-46457043 Msa1106510:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7_3:46457060-46457079 Msa1106510:intron 35.0%
! CTAGCACAAAACCTTTTCTT+TGG + chr7_3:46457074-46457093 None:intergenic 35.0%
GATAAACCTTGATCTCTCAA+GGG + chr7_3:46457243-46457262 None:intergenic 35.0%
AGATAAACCTTGATCTCTCA+AGG + chr7_3:46457244-46457263 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7_3:46457329-46457348 Msa1106510:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7_3:46457330-46457349 Msa1106510:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7_3:46457383-46457402 Msa1106510:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7_3:46457401-46457420 Msa1106510:CDS 35.0%
TTTGGAGAGAATTGTTCCTT+TGG - chr7_3:46457419-46457438 Msa1106510:CDS 35.0%
TATCAAAAGAGGCTAAGAAC+AGG - chr7_3:46457498-46457517 Msa1106510:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7_3:46457743-46457762 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7_3:46457791-46457810 None:intergenic 35.0%
TACTCCTCTTAATGACTTGA+AGG - chr7_3:46457823-46457842 Msa1106510:CDS 35.0%
ATTTAAATGTTCTACGCGTG+GGG - chr7_3:46457919-46457938 Msa1106510:intron 35.0%
TCAACATCTGCCTTAACAAA+TGG - chr7_3:46458035-46458054 Msa1106510:CDS 35.0%
ATCTGCCTTAACAAATGGTT+TGG - chr7_3:46458040-46458059 Msa1106510:CDS 35.0%
CATGTTAACTGAAGTTAAGG+AGG - chr7_3:46458067-46458086 Msa1106510:CDS 35.0%
GTTGTGTGTTTCAAGATTCT+TGG - chr7_3:46458116-46458135 Msa1106510:CDS 35.0%
TTCTCTTTGTTGAAGGAAGT+AGG + chr7_3:46458324-46458343 None:intergenic 35.0%
CTTCCTTCAACAAAGAGAAA+AGG - chr7_3:46458325-46458344 Msa1106510:CDS 35.0%
AGGAATAATGCTATGATGGT+TGG + chr7_3:46458493-46458512 None:intergenic 35.0%
!! CTAATTCACTTGACTTGTGA+TGG - chr7_3:46458614-46458633 Msa1106510:exon 35.0%
TACTACTTCTACTCAAGCAG+AGG - chr7_3:46456454-46456473 Msa1106510:three_prime_UTR 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7_3:46456518-46456537 Msa1106510:three_prime_UTR 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7_3:46456519-46456538 Msa1106510:three_prime_UTR 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7_3:46456584-46456603 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7_3:46456583-46456602 Msa1106510:three_prime_UTR 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7_3:46456605-46456624 Msa1106510:three_prime_UTR 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7_3:46456682-46456701 Msa1106510:three_prime_UTR 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7_3:46456731-46456750 None:intergenic 40.0%
!! CTTCCCCAAGGATTTGTTAA+TGG - chr7_3:46456917-46456936 Msa1106510:three_prime_UTR 40.0%
! TACAGGCTTTAGTCTGTTCA+AGG - chr7_3:46456997-46457016 Msa1106510:CDS 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7_3:46457039-46457058 None:intergenic 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7_3:46457040-46457059 None:intergenic 40.0%
GCTTTCCAAGTCAACTTTGA+CGG - chr7_3:46457193-46457212 Msa1106510:intron 40.0%
CAAATCCGTCAAAGTTGACT+TGG + chr7_3:46457201-46457220 None:intergenic 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7_3:46457331-46457350 Msa1106510:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7_3:46457398-46457417 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7_3:46457575-46457594 None:intergenic 40.0%
CCATGATATTCATGAACACC+AGG + chr7_3:46457587-46457606 None:intergenic 40.0%
CCTGGTGTTCATGAATATCA+TGG - chr7_3:46457584-46457603 Msa1106510:CDS 40.0%
GCATAACTCTTATCTACACC+AGG + chr7_3:46457656-46457675 None:intergenic 40.0%
GGTGTAGATAAGAGTTATGC+TGG - chr7_3:46457656-46457675 Msa1106510:CDS 40.0%
AAAGCTGAAATTGGAGTCAG+TGG + chr7_3:46457782-46457801 None:intergenic 40.0%
! ACTGACTCCAATTTCAGCTT+TGG - chr7_3:46457781-46457800 Msa1106510:CDS 40.0%
CTGACTCCAATTTCAGCTTT+GGG - chr7_3:46457782-46457801 Msa1106510:CDS 40.0%
AGTTATCACAATCGGCATCA+AGG - chr7_3:46457850-46457869 Msa1106510:CDS 40.0%
GCAGTGTCTTAGCATATTGA+AGG - chr7_3:46458001-46458020 Msa1106510:CDS 40.0%
! GTGAGCCAAACCATTTGTTA+AGG + chr7_3:46458048-46458067 None:intergenic 40.0%
GTGTGTTTCAAGATTCTTGG+AGG - chr7_3:46458119-46458138 Msa1106510:CDS 40.0%
CAAGATTCTTGGAGGAAAGT+TGG - chr7_3:46458127-46458146 Msa1106510:CDS 40.0%
ACAAAGAGAAAAGGAAAGGG+AGG - chr7_3:46458334-46458353 Msa1106510:CDS 40.0%
CAAAGAGAAAAGGAAAGGGA+GGG - chr7_3:46458335-46458354 Msa1106510:CDS 40.0%
AACATGTCACCAACCATCAT+GGG + chr7_3:46458481-46458500 None:intergenic 40.0%
TAACATGTCACCAACCATCA+TGG + chr7_3:46458645-46458664 None:intergenic 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7_3:46456454-46456473 Msa1106510:three_prime_UTR 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7_3:46456518-46456537 Msa1106510:three_prime_UTR 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7_3:46456519-46456538 Msa1106510:three_prime_UTR 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7_3:46456584-46456603 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7_3:46456583-46456602 Msa1106510:three_prime_UTR 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7_3:46456605-46456624 Msa1106510:three_prime_UTR 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7_3:46456682-46456701 Msa1106510:three_prime_UTR 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7_3:46456731-46456750 None:intergenic 40.0%
!! CTTCCCCAAGGATTTGTTAA+TGG - chr7_3:46456917-46456936 Msa1106510:three_prime_UTR 40.0%
! TACAGGCTTTAGTCTGTTCA+AGG - chr7_3:46456997-46457016 Msa1106510:CDS 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7_3:46457039-46457058 None:intergenic 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7_3:46457040-46457059 None:intergenic 40.0%
GCTTTCCAAGTCAACTTTGA+CGG - chr7_3:46457193-46457212 Msa1106510:intron 40.0%
CAAATCCGTCAAAGTTGACT+TGG + chr7_3:46457201-46457220 None:intergenic 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7_3:46457331-46457350 Msa1106510:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7_3:46457398-46457417 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7_3:46457575-46457594 None:intergenic 40.0%
CCATGATATTCATGAACACC+AGG + chr7_3:46457587-46457606 None:intergenic 40.0%
CCTGGTGTTCATGAATATCA+TGG - chr7_3:46457584-46457603 Msa1106510:CDS 40.0%
GCATAACTCTTATCTACACC+AGG + chr7_3:46457656-46457675 None:intergenic 40.0%
GGTGTAGATAAGAGTTATGC+TGG - chr7_3:46457656-46457675 Msa1106510:CDS 40.0%
AAAGCTGAAATTGGAGTCAG+TGG + chr7_3:46457782-46457801 None:intergenic 40.0%
! ACTGACTCCAATTTCAGCTT+TGG - chr7_3:46457781-46457800 Msa1106510:CDS 40.0%
CTGACTCCAATTTCAGCTTT+GGG - chr7_3:46457782-46457801 Msa1106510:CDS 40.0%
AGTTATCACAATCGGCATCA+AGG - chr7_3:46457850-46457869 Msa1106510:CDS 40.0%
GCAGTGTCTTAGCATATTGA+AGG - chr7_3:46458001-46458020 Msa1106510:CDS 40.0%
! GTGAGCCAAACCATTTGTTA+AGG + chr7_3:46458048-46458067 None:intergenic 40.0%
GTGTGTTTCAAGATTCTTGG+AGG - chr7_3:46458119-46458138 Msa1106510:CDS 40.0%
CAAGATTCTTGGAGGAAAGT+TGG - chr7_3:46458127-46458146 Msa1106510:CDS 40.0%
ACAAAGAGAAAAGGAAAGGG+AGG - chr7_3:46458334-46458353 Msa1106510:CDS 40.0%
CAAAGAGAAAAGGAAAGGGA+GGG - chr7_3:46458335-46458354 Msa1106510:CDS 40.0%
AACATGTCACCAACCATCAT+GGG + chr7_3:46458481-46458500 None:intergenic 40.0%
TAACATGTCACCAACCATCA+TGG + chr7_3:46458645-46458664 None:intergenic 40.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7_3:46456594-46456613 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7_3:46456592-46456611 Msa1106510:three_prime_UTR 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7_3:46456620-46456639 Msa1106510:three_prime_UTR 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7_3:46456665-46456684 Msa1106510:three_prime_UTR 45.0%
TGAAGTGATCATCTCGCGAT+AGG + chr7_3:46456831-46456850 None:intergenic 45.0%
GGAAGACGTGTAAGGAAAAC+TGG + chr7_3:46456902-46456921 None:intergenic 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7_3:46457036-46457055 Msa1106510:CDS 45.0%
AACCATCCCTTGAGAGATCA+AGG - chr7_3:46457234-46457253 Msa1106510:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7_3:46457239-46457258 None:intergenic 45.0%
!! TGTTCCTTTGGAAGCATCAG+CGG - chr7_3:46457431-46457450 Msa1106510:CDS 45.0%
TTTAACTGTGGGGCAATGCA+AGG + chr7_3:46457533-46457552 None:intergenic 45.0%
TATCACAATCGGCATCAAGG+AGG - chr7_3:46457853-46457872 Msa1106510:CDS 45.0%
TCTTGGAGGAAAGTTGGCAA+TGG - chr7_3:46458133-46458152 Msa1106510:CDS 45.0%
AGGAAAGTTGGCAATGGACA+AGG - chr7_3:46458139-46458158 Msa1106510:CDS 45.0%
TTGTGATGGTTGACCCATGA+TGG - chr7_3:46458628-46458647 Msa1106510:exon 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7_3:46456594-46456613 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7_3:46456592-46456611 Msa1106510:three_prime_UTR 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7_3:46456620-46456639 Msa1106510:three_prime_UTR 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7_3:46456665-46456684 Msa1106510:three_prime_UTR 45.0%
TGAAGTGATCATCTCGCGAT+AGG + chr7_3:46456831-46456850 None:intergenic 45.0%
GGAAGACGTGTAAGGAAAAC+TGG + chr7_3:46456902-46456921 None:intergenic 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7_3:46457036-46457055 Msa1106510:CDS 45.0%
AACCATCCCTTGAGAGATCA+AGG - chr7_3:46457234-46457253 Msa1106510:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7_3:46457239-46457258 None:intergenic 45.0%
!! TGTTCCTTTGGAAGCATCAG+CGG - chr7_3:46457431-46457450 Msa1106510:CDS 45.0%
TTTAACTGTGGGGCAATGCA+AGG + chr7_3:46457533-46457552 None:intergenic 45.0%
TATCACAATCGGCATCAAGG+AGG - chr7_3:46457853-46457872 Msa1106510:CDS 45.0%
TCTTGGAGGAAAGTTGGCAA+TGG - chr7_3:46458133-46458152 Msa1106510:CDS 45.0%
AGGAAAGTTGGCAATGGACA+AGG - chr7_3:46458139-46458158 Msa1106510:CDS 45.0%
TTGTGATGGTTGACCCATGA+TGG - chr7_3:46458628-46458647 Msa1106510:exon 45.0%
!!! TATTATTATTTTATATATAC+AGG - chr7_3:46457145-46457164 Msa1106510:intron 5.0%
!!! ATTTATATTAGATTTTTAAT+CGG - chr7_3:46457890-46457909 Msa1106510:CDS 5.0%
!!! TATTATTATTTTATATATAC+AGG - chr7_3:46457145-46457164 Msa1106510:intron 5.0%
!!! ATTTATATTAGATTTTTAAT+CGG - chr7_3:46457890-46457909 Msa1106510:CDS 5.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7_3:46456523-46456542 Msa1106510:three_prime_UTR 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7_3:46456721-46456740 Msa1106510:three_prime_UTR 50.0%
TTCCTTACACGTCTTCCCCA+AGG - chr7_3:46456905-46456924 Msa1106510:three_prime_UTR 50.0%
ATCCTTGGGGAAGACGTGTA+AGG + chr7_3:46456910-46456929 None:intergenic 50.0%
CAATCCGCTGATGCTTCCAA+AGG + chr7_3:46457438-46457457 None:intergenic 50.0%
TAATGTGGGGAATCCTGCTG+AGG - chr7_3:46457703-46457722 Msa1106510:CDS 50.0%
AATGTGGGGAATCCTGCTGA+GGG - chr7_3:46457704-46457723 Msa1106510:CDS 50.0%
TCCTGCTGAGGGTTATGTCA+AGG - chr7_3:46457715-46457734 Msa1106510:CDS 50.0%
CCTGCTGAGGGTTATGTCAA+GGG - chr7_3:46457716-46457735 Msa1106510:CDS 50.0%
AAGGAAAGGGAGGGTAAGTG+AGG - chr7_3:46458344-46458363 Msa1106510:CDS 50.0%
AGGAAAGGGAGGGTAAGTGA+GGG - chr7_3:46458345-46458364 Msa1106510:CDS 50.0%
GATGGTTGACCCATGATGGT+TGG - chr7_3:46458632-46458651 Msa1106510:five_prime_UTR 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7_3:46456523-46456542 Msa1106510:three_prime_UTR 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7_3:46456721-46456740 Msa1106510:three_prime_UTR 50.0%
TTCCTTACACGTCTTCCCCA+AGG - chr7_3:46456905-46456924 Msa1106510:three_prime_UTR 50.0%
ATCCTTGGGGAAGACGTGTA+AGG + chr7_3:46456910-46456929 None:intergenic 50.0%
CAATCCGCTGATGCTTCCAA+AGG + chr7_3:46457438-46457457 None:intergenic 50.0%
TAATGTGGGGAATCCTGCTG+AGG - chr7_3:46457703-46457722 Msa1106510:CDS 50.0%
AATGTGGGGAATCCTGCTGA+GGG - chr7_3:46457704-46457723 Msa1106510:CDS 50.0%
TCCTGCTGAGGGTTATGTCA+AGG - chr7_3:46457715-46457734 Msa1106510:CDS 50.0%
CCTGCTGAGGGTTATGTCAA+GGG - chr7_3:46457716-46457735 Msa1106510:CDS 50.0%
AAGGAAAGGGAGGGTAAGTG+AGG - chr7_3:46458344-46458363 Msa1106510:CDS 50.0%
AGGAAAGGGAGGGTAAGTGA+GGG - chr7_3:46458345-46458364 Msa1106510:CDS 50.0%
GATGGTTGACCCATGATGGT+TGG - chr7_3:46458632-46458651 Msa1106510:five_prime_UTR 50.0%
CCCTTGACATAACCCTCAGC+AGG + chr7_3:46457719-46457738 None:intergenic 55.0%
CCCTTGACATAACCCTCAGC+AGG + chr7_3:46457719-46457738 None:intergenic 55.0%
CGCGTGGGGCGTGTCAATTT+CGG - chr7_3:46457933-46457952 Msa1106510:intron 60.0%
GTGGGGCGTGTCAATTTCGG+TGG - chr7_3:46457936-46457955 Msa1106510:intron 60.0%
CGCGTGGGGCGTGTCAATTT+CGG - chr7_3:46457933-46457952 Msa1106510:intron 60.0%
GTGGGGCGTGTCAATTTCGG+TGG - chr7_3:46457936-46457955 Msa1106510:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 46456354 46458723 46456354 ID=Msa1106510;Name=Msa1106510
chr7_3 mRNA 46456354 46458723 46456354 ID=Msa1106510-mRNA-1;Parent=Msa1106510;Name=Msa1106510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=92|1|1|1|1|1|3|626|478
chr7_3 exon 46456354 46457072 46456354 ID=Msa1106510-mRNA-1:exon:9531;Parent=Msa1106510-mRNA-1
chr7_3 exon 46457203 46457910 46457203 ID=Msa1106510-mRNA-1:exon:9530;Parent=Msa1106510-mRNA-1
chr7_3 exon 46457996 46458723 46457996 ID=Msa1106510-mRNA-1:exon:9529;Parent=Msa1106510-mRNA-1
chr7_3 five_prime_UTR 46458632 46458723 46458632 ID=Msa1106510-mRNA-1:five_prime_utr;Parent=Msa1106510-mRNA-1
chr7_3 CDS 46457996 46458631 46457996 ID=Msa1106510-mRNA-1:cds;Parent=Msa1106510-mRNA-1
chr7_3 CDS 46457203 46457910 46457203 ID=Msa1106510-mRNA-1:cds;Parent=Msa1106510-mRNA-1
chr7_3 CDS 46456980 46457072 46456980 ID=Msa1106510-mRNA-1:cds;Parent=Msa1106510-mRNA-1
chr7_3 three_prime_UTR 46456354 46456979 46456354 ID=Msa1106510-mRNA-1:three_prime_utr;Parent=Msa1106510-mRNA-1
Gene Sequence

>Msa1106510

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTGAACTCAACATTGATGACAATCAACCAACAAAGTACTTCACATGTTACTACTTTAGTGGTTGCTCCTATCGCGAGATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTTTTTCTTTTACACTTCCAGTTTTCCTTACACGTCTTCCCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGATTATACAGGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTACTTGATCTGCTTAAATGTTCTTTGCTTTCCAAGTCAACTTTGACGGATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTCTGTGATGTTGAAATTAGTGGCAATATCCAAATTATTCTGAAGCTAGTTTTAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAATTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGAGAGAATTGTTCCTTTGGAAGCATCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAAAAGAGGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTAAAGTTAAGCAATCAGATATTACCAATTCTTGAACCTGGTGTTCATGAATATCATGGTTATTTTGAAAGTAATACTGATATTATTTGTGTTCAAATTTTCAAACCTGGTGTAGATAAGAGTTATGCTGGAAATTTTAAGAAAATGAATTTATCTAATGTGGGGAATCCTGCTGAGGGTTATGTCAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTTTAGCACCACTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTAATGACTTGAAGGAAAAAGTTATCACAATCGGCATCAAGGAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAACATCTGCCTTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>Msa1106510

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCNTLELNIDDNQPTKYFTCYYFSGCSYREMITSTYKDKHKCRCGFSFTLPVFLTRLPQGFVNGVATFVITDDLTIKPNCIDYTGFSLFKEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKSTLTDLFLEKKPSLERSRFIFCDVEISGNIQIILKLVLRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCSFGSISGLYKSIVELNENKYLISKEAKNRLVDPCIAPQLKLSNQILPILEPGVHEYHGYFESNTDIICVQIFKPGVDKSYAGNFKKMNLSNVGNPAEGYVKGPAMYFATDDLVLAPLTPISALGLLNRLNTPLNDLKEKVITIGIKECLSILKASLTSTSALTNGLAHMLTEVKEEK*