AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563890 MtrunA17_Chr8g0377691 87.767 515 63 0 1 515 1 515 0.0 919
Msa0563890 MtrunA17_Chr8g0377701 87.160 514 65 1 1 513 1 514 0.0 909
Msa0563890 MtrunA17_Chr8g0377651 85.493 517 69 2 1 515 3 515 0.0 907
Msa0563890 MtrunA17_Chr8g0377641 85.465 516 71 2 1 515 1 513 0.0 902
Msa0563890 MtrunA17_Chr8g0377681 83.757 511 82 1 6 515 3 513 0.0 878
Msa0563890 MtrunA17_Chr4g0037521 58.648 503 197 8 13 508 9 507 0.0 561
Msa0563890 MtrunA17_Chr4g0037491 56.908 304 119 7 205 499 1 301 7.73e-113 336
Msa0563890 MtrunA17_Chr8g0377661 88.462 78 9 0 438 515 1 78 6.81e-42 144
Msa0563890 MtrunA17_Chr4g0037501 65.957 94 30 2 105 196 2 95 1.43e-30 114
Msa0563890 MtrunA17_Chr8g0385461 32.530 249 153 6 40 287 162 396 1.52e-30 125
Msa0563890 MtrunA17_Chr3g0097801 33.086 269 171 5 44 309 46 308 1.31e-26 113
Msa0563890 MtrunA17_Chr2g0279961 29.617 287 189 6 32 313 121 399 4.77e-23 102
Msa0563890 MtrunA17_Chr3g0130801 25.052 483 317 19 40 503 200 656 1.51e-18 89.0
Msa0563890 MtrunA17_Chr1g0191741 39.496 119 66 2 140 257 63 176 6.85e-15 76.6
Msa0563890 MtrunA17_Chr8g0384851 28.516 256 166 6 26 271 117 365 9.15e-13 70.9
Msa0563890 MtrunA17_Chr4g0050371 34.507 142 87 2 138 278 107 243 6.01e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563890 AT4G34880.2 60.887 496 180 5 18 508 22 508 0.0 567
Msa0563890 AT4G34880.1 53.535 495 172 5 18 508 22 462 3.19e-175 502
Msa0563890 AT5G07360.1 32.510 243 153 5 40 281 204 436 1.13e-28 120
Msa0563890 AT5G07360.3 32.510 243 153 5 40 281 204 436 1.13e-28 120
Msa0563890 AT5G07360.2 32.099 243 147 6 40 281 204 429 1.46e-25 111
Msa0563890 AT3G25660.1 32.881 295 181 8 52 340 57 340 1.79e-25 110
Msa0563890 AT5G64440.1 27.740 292 187 8 35 317 125 401 3.69e-19 91.3
Msa0563890 AT1G08980.1 42.017 119 63 2 140 257 64 177 7.45e-16 80.1
Msa0563890 AT5G09420.1 38.462 117 66 2 138 253 105 216 1.85e-11 67.0

Find 120 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATACTCACCAATTT+TGG 0.124167 4_1:+64330754 None:intergenic
GTGAGACTGTACTACAATTT+TGG 0.196580 4_1:-64331111 Msa0563890:CDS
TTAGACGTGTGAAGTATTAA+TGG 0.221070 4_1:-64330316 Msa0563890:exon
GTTGCATGGAATACCTATTT+TGG 0.222876 4_1:-64332472 Msa0563890:CDS
AAAGCTGGGGCTATCATATT+AGG 0.224800 4_1:-64332342 Msa0563890:CDS
GTGAAACAACTAAATCTTTC+AGG 0.228755 4_1:+64330821 None:intergenic
AAAGCAGCAGGTTCTCTTTC+AGG 0.230296 4_1:-64332495 Msa0563890:CDS
ATCTTAATTGTAGGAGAAAA+TGG 0.251388 4_1:-64330677 Msa0563890:intron
CAGGCAAAGAGGTGCTGTTT+TGG 0.279043 4_1:-64330941 Msa0563890:CDS
ATGACAAGATGGTCACAAAA+TGG 0.286173 4_1:-64330577 Msa0563890:CDS
GTGTCTTGCCTTGGGCTAAT+TGG 0.286345 4_1:+64331444 None:intergenic
TTGATGTTAACTGCTTTCTT+TGG 0.290637 4_1:+64332640 None:intergenic
TGTAACTAACAGAAGTATTA+TGG 0.292613 4_1:+64332743 None:intergenic
AATATCAGTAGCAGCAAATT+TGG 0.294381 4_1:-64331580 Msa0563890:CDS
AATTGAGCATAGCCACCTTT+TGG 0.307622 4_1:+64331174 None:intergenic
CAACAAGAAACACCCAAAAT+TGG 0.311801 4_1:-64330767 Msa0563890:intron
ATGTTATCCTTAACCAAAAT+AGG 0.317243 4_1:+64332459 None:intergenic
CAGCTTGCAGCATGAGATCT+TGG 0.321727 4_1:+64330647 None:intergenic
TTGTAGGAGAAAATGGATTA+TGG 0.330000 4_1:-64330670 Msa0563890:intron
CCATTTGGAATTTGCTTTGG+AGG 0.345917 4_1:-64330427 Msa0563890:CDS
AAGGATGTTGGAAGCATAGA+AGG 0.345981 4_1:+64332717 None:intergenic
TCTGCATGTGCTAGTGCATC+TGG 0.346984 4_1:+64332543 None:intergenic
TACCCAACTGTGTCTTGCCT+TGG 0.349156 4_1:+64331435 None:intergenic
GCTGAAAAGACAAATGGAAT+TGG 0.352248 4_1:-64330628 Msa0563890:CDS
TCTGATACGGTCCTGCAAAT+TGG 0.353309 4_1:+64331273 None:intergenic
ACGCCGCTAAAGTATGAAAA+AGG 0.370786 4_1:+64330508 None:intergenic
ACCCAACTGTGTCTTGCCTT+GGG 0.375767 4_1:+64331436 None:intergenic
TGAAAGAGAACCTGCTGCTT+TGG 0.377922 4_1:+64332497 None:intergenic
ATGCCATTTGGAATTTGCTT+TGG 0.378888 4_1:-64330430 Msa0563890:CDS
TTTAGCGGCGTACTTGCTAT+TGG 0.387009 4_1:-64330496 Msa0563890:CDS
TCTAAGACTCCTTTGAGAAC+TGG 0.389957 4_1:+64332573 None:intergenic
TATGAAAAGGGCATGCCATT+TGG 0.394570 4_1:-64330442 Msa0563890:CDS
ATCTTTCAGGTACGCATTCA+AGG 0.401034 4_1:+64330834 None:intergenic
CTTGCTATTGGAGGTTATCC+TGG 0.409552 4_1:-64330484 Msa0563890:CDS
TAAGGATAACATTGCAACTA+AGG 0.417159 4_1:-64332448 Msa0563890:CDS
AAGCAGCAGGTTCTCTTTCA+GGG 0.420978 4_1:-64332494 Msa0563890:CDS
TTCTATGCTTCCAACATCCT+TGG 0.422281 4_1:-64332715 Msa0563890:CDS
CTAAGACTCCTTTGAGAACT+GGG 0.435475 4_1:+64332574 None:intergenic
CTGAAAAGACAAATGGAATT+GGG 0.436484 4_1:-64330627 Msa0563890:CDS
CTAACTACGCCTGCATCTCT+TGG 0.436953 4_1:+64332375 None:intergenic
CAAGGATCATCCAATGTGTA+TGG 0.446045 4_1:+64331624 None:intergenic
CAGGCGTAGTTAGCAGGTTA+AGG 0.451006 4_1:-64332365 Msa0563890:CDS
AAGCTGGGGCTATCATATTA+GGG 0.457207 4_1:-64332341 Msa0563890:CDS
GTTAGCAGGTTAAGGAAAGC+TGG 0.462043 4_1:-64332357 Msa0563890:CDS
GCCCAAGGCAAGACACAGTT+GGG 0.473558 4_1:-64331437 Msa0563890:intron
ACTACTGAGTTCATACTTGA+AGG 0.474985 4_1:+64331513 None:intergenic
AGTTCTCAAAGGAGTCTTAG+AGG 0.475499 4_1:-64332571 Msa0563890:CDS
TGACAAGATGGTCACAAAAT+GGG 0.477152 4_1:-64330576 Msa0563890:CDS
TCAAGTATGAACTCAGTAGT+AGG 0.480266 4_1:-64331510 Msa0563890:CDS
GAGATGCAGGCGTAGTTAGC+AGG 0.483944 4_1:-64332371 Msa0563890:CDS
AGCGGCGTACTTGCTATTGG+AGG 0.487808 4_1:-64330493 Msa0563890:CDS
TGTTCCAGCAGGATATGAAA+AGG 0.490531 4_1:-64330455 Msa0563890:CDS
ATTTGCTTTGGAGGTTTGAA+AGG 0.493826 4_1:-64330418 Msa0563890:CDS
CTGCAAGCTGAAAAGACAAA+TGG 0.495604 4_1:-64330634 Msa0563890:CDS
AAAGTAAATTGACAGTATGC+TGG 0.506247 4_1:-64330285 Msa0563890:three_prime_UTR
TCAGTAGTGCCAAGAGATGC+AGG 0.512594 4_1:-64332384 Msa0563890:CDS
TAAGCAATTTCAATTAACTT+CGG 0.513290 4_1:+64330388 None:intergenic
GGTTCTCTTTCAGGGTTGCA+TGG 0.513466 4_1:-64332486 Msa0563890:CDS
CTAAAGAAAGACGGACTAAG+AGG 0.516133 4_1:-64331150 Msa0563890:CDS
CCTGGAGTCATTGTTCCAGC+AGG 0.517601 4_1:-64330466 Msa0563890:CDS
GCATCAAAGTATATCCCAAA+AGG 0.517964 4_1:-64331189 Msa0563890:CDS
TTAGCAGGTTAAGGAAAGCT+GGG 0.522406 4_1:-64332356 Msa0563890:CDS
CATACTTGAAGGGCATAAGA+TGG 0.523653 4_1:+64331524 None:intergenic
CTTCCAACATCCTTGGCTAG+TGG 0.524164 4_1:-64332708 Msa0563890:CDS
TCTGATGTGACCACTCACTC+AGG 0.535215 4_1:+64332310 None:intergenic
CCTCCAAAGCAAATTCCAAA+TGG 0.541500 4_1:+64330427 None:intergenic
TCTAACTTTCGAAGCGGAGG+GGG 0.541662 4_1:+64330334 None:intergenic
GAGAGAAGGACCAAAGCAGC+AGG 0.543175 4_1:-64332507 Msa0563890:CDS
CTACTGAGTTCATACTTGAA+GGG 0.545399 4_1:+64331514 None:intergenic
GATCCTTGTGGTTCAAGTAG+TGG 0.552399 4_1:-64331609 Msa0563890:CDS
GATAAGCTAAACACTACTGC+AGG 0.552473 4_1:-64332426 Msa0563890:CDS
TATGTTCTTGAAACCATAGC+AGG 0.553334 4_1:-64331243 Msa0563890:CDS
GGCTAGTGGATTCTCAATCA+AGG 0.555061 4_1:-64332694 Msa0563890:CDS
AGCCCAAGGCAAGACACAGT+TGG 0.555092 4_1:-64331438 Msa0563890:CDS
CTTTATTGAACATGACAAGA+TGG 0.556585 4_1:-64330588 Msa0563890:CDS
CCTGCTGGAACAATGACTCC+AGG 0.556829 4_1:+64330466 None:intergenic
GTTGGTCTCACTAGTAGAGC+AGG 0.557670 4_1:-64331474 Msa0563890:CDS
AATCCACTAGCCAAGGATGT+TGG 0.560632 4_1:+64332705 None:intergenic
CTAGTGAAGCTCCTAGTGGT+TGG 0.561059 4_1:-64332284 Msa0563890:CDS
GTTCCAGCAGGATATGAAAA+GGG 0.561856 4_1:-64330454 Msa0563890:CDS
TGCTAGAGGTGGACAAGGAA+AGG 0.563245 4_1:-64332259 Msa0563890:intron
AACATAAGCAGCATCTGATA+CGG 0.572591 4_1:+64331260 None:intergenic
TAAAGCGTCTATGCCTGCTA+TGG 0.572957 4_1:+64331230 None:intergenic
GTTTCAACTTTCAAGACACA+TGG 0.578997 4_1:-64332802 None:intergenic
TGTTTCACCAGTGAAAAGCT+TGG 0.582494 4_1:-64330806 Msa0563890:CDS
GCTCAATTTCTAAAGAAAGA+CGG 0.585283 4_1:-64331159 Msa0563890:CDS
AAGAAATAAACTTGATGCTG+TGG 0.585547 4_1:-64330536 Msa0563890:CDS
ACGTCTAACTTTCGAAGCGG+AGG 0.595273 4_1:+64330331 None:intergenic
CGTCTAACTTTCGAAGCGGA+GGG 0.597901 4_1:+64330332 None:intergenic
GATTGAGAATCCACTAGCCA+AGG 0.599130 4_1:+64332698 None:intergenic
CTGATGTGACCACTCACTCA+GGG 0.604738 4_1:+64332311 None:intergenic
TTGTGGTTCAAGTAGTGGAT+CGG 0.605165 4_1:-64331604 Msa0563890:CDS
ATACAAAACCCAGTTCTCAA+AGG 0.608040 4_1:-64332582 Msa0563890:CDS
GTCTAACTTTCGAAGCGGAG+GGG 0.616099 4_1:+64330333 None:intergenic
TCTGTCAAAATCAGGCAAAG+AGG 0.616368 4_1:-64330952 Msa0563890:intron
GGAAGGCCACCCTGAGTGAG+TGG 0.620599 4_1:-64332320 Msa0563890:CDS
CCTCTAGCATTCCAACCACT+AGG 0.623602 4_1:+64332273 None:intergenic
CCTAGTGGTTGGAATGCTAG+AGG 0.624711 4_1:-64332273 Msa0563890:CDS
AACATTGATCAAATTATCAG+TGG 0.625881 4_1:-64330898 Msa0563890:CDS
TCAAAGTATATCCCAAAAGG+TGG 0.630247 4_1:-64331186 Msa0563890:CDS
TGGGGCTATCATATTAGGGA+AGG 0.630660 4_1:-64332337 Msa0563890:CDS
CTACTAGTGAGACCAACTGT+TGG 0.631026 4_1:+64331480 None:intergenic
ATAGAGCTGATCAAGAGAGA+AGG 0.635895 4_1:-64332521 Msa0563890:CDS
CTAACAGAAGTATTATGGAA+AGG 0.639092 4_1:+64332748 None:intergenic
AGGGCATAAGATGGAGCCGT+CGG 0.639961 4_1:+64331533 None:intergenic
TGAGTGAGTGGTCACATCAG+AGG 0.640749 4_1:-64332308 Msa0563890:CDS
TGGAATGCTAGAGGTGGACA+AGG 0.642036 4_1:-64332264 Msa0563890:CDS
AGGATGTTGGAAGCATAGAA+GGG 0.642867 4_1:+64332718 None:intergenic
AATTTGGTGACTGTGTCACT+TGG 0.645354 4_1:-64331564 Msa0563890:CDS
GTAGGCATCAAACCAACAGT+TGG 0.645953 4_1:-64331492 Msa0563890:CDS
GTGTAATTCCAATTAGCCCA+AGG 0.647537 4_1:-64331452 Msa0563890:CDS
AGTGGTTGGAATGCTAGAGG+TGG 0.654914 4_1:-64332270 Msa0563890:CDS
TACACATTGGATGATCCTTG+TGG 0.659008 4_1:-64331621 Msa0563890:CDS
CACACGTCTAACTTTCGAAG+CGG 0.659578 4_1:+64330328 None:intergenic
AGGTCTAGTGAAGCTCCTAG+TGG 0.675570 4_1:-64332288 Msa0563890:CDS
ATGTGACCACTCACTCAGGG+TGG 0.680087 4_1:+64332314 None:intergenic
TCACTTGGTACTGAAACCGA+CGG 0.682947 4_1:-64331549 Msa0563890:CDS
TAGCAGGTTAAGGAAAGCTG+GGG 0.692722 4_1:-64332355 Msa0563890:CDS
TGTGCAGAATCCATACACAT+TGG 0.705508 4_1:-64331634 Msa0563890:intron
GATCCACTACTTGAACCACA+AGG 0.767744 4_1:+64331606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTCTTTTATATATATTAT+GGG + chr4_1:64332785-64332804 None:intergenic 10.0%
!!! TTAGTCTTTTATATATATTA+TGG + chr4_1:64332786-64332805 None:intergenic 10.0%
!! TCATAAGAAAATAAACAAAA+GGG + chr4_1:64332249-64332268 None:intergenic 15.0%
!! TTCATAAGAAAATAAACAAA+AGG + chr4_1:64332250-64332269 None:intergenic 15.0%
!! TTATGAATTAATATTGATCA+AGG - chr4_1:64332263-64332282 Msa0563890:CDS 15.0%
!!! ATGTAATTTTAAGACTATAT+TGG - chr4_1:64332750-64332769 Msa0563890:CDS 15.0%
!!! TTTGTATTTTGATTTGTTTC+AGG + chr4_1:64330372-64330391 None:intergenic 20.0%
!! CTTATACTTATAATTGAGTA+TGG + chr4_1:64330931-64330950 None:intergenic 20.0%
!! AGACTAAAATATAAGCAAAA+AGG + chr4_1:64331068-64331087 None:intergenic 20.0%
!!! TTATTTTTTGACTTGCAATT+AGG + chr4_1:64331111-64331130 None:intergenic 20.0%
!!! TATATATACTCACCAATTTT+GGG + chr4_1:64332215-64332234 None:intergenic 20.0%
!!! ATATATATACTCACCAATTT+TGG + chr4_1:64332216-64332235 None:intergenic 20.0%
!! CATAAGAAAATAAACAAAAG+GGG + chr4_1:64332248-64332267 None:intergenic 20.0%
!! TAAGCAATTTCAATTAACTT+CGG + chr4_1:64332582-64332601 None:intergenic 20.0%
!!! CTTTTATATATATTATGGGT+TGG + chr4_1:64332781-64332800 None:intergenic 20.0%
!!! TGTAACTAACAGAAGTATTA+TGG + chr4_1:64330227-64330246 None:intergenic 25.0%
! ATGTTATCCTTAACCAAAAT+AGG + chr4_1:64330511-64330530 None:intergenic 25.0%
! TACTTATAATTGAGTATGGA+GGG + chr4_1:64330927-64330946 None:intergenic 25.0%
! ATACTTATAATTGAGTATGG+AGG + chr4_1:64330928-64330947 None:intergenic 25.0%
! TACACACAAACTAAAAATAG+TGG - chr4_1:64330959-64330978 Msa0563890:intron 25.0%
! AACTCATTTGATATTTCTCT+TGG + chr4_1:64331237-64331256 None:intergenic 25.0%
! AAGAGAAATATCAAATGAGT+TGG - chr4_1:64331236-64331255 Msa0563890:CDS 25.0%
! ATGAATGATTCTTGAAAATG+AGG - chr4_1:64331288-64331307 Msa0563890:intron 25.0%
! AGTCTATATATATGGCAAAT+TGG - chr4_1:64331555-64331574 Msa0563890:CDS 25.0%
!! TAGATAAATGTCTTTTGACA+GGG + chr4_1:64331635-64331654 None:intergenic 25.0%
!! ATAGATAAATGTCTTTTGAC+AGG + chr4_1:64331636-64331655 None:intergenic 25.0%
! AACATTGATCAAATTATCAG+TGG - chr4_1:64332069-64332088 Msa0563890:intron 25.0%
! ATCTTAATTGTAGGAGAAAA+TGG - chr4_1:64332290-64332309 Msa0563890:CDS 25.0%
!! CTAACAGAAGTATTATGGAA+AGG + chr4_1:64330222-64330241 None:intergenic 30.0%
TTGATGTTAACTGCTTTCTT+TGG + chr4_1:64330330-64330349 None:intergenic 30.0%
!!! TGGAATACCTATTTTGGTTA+AGG - chr4_1:64330501-64330520 Msa0563890:CDS 30.0%
TAAGGATAACATTGCAACTA+AGG - chr4_1:64330519-64330538 Msa0563890:CDS 30.0%
TTTACGTATTCCTGTACATT+TGG - chr4_1:64330893-64330912 Msa0563890:CDS 30.0%
CCAAAATACAAGCAAAACTT+AGG + chr4_1:64331028-64331047 None:intergenic 30.0%
! CCTAAGTTTTGCTTGTATTT+TGG - chr4_1:64331025-64331044 Msa0563890:intron 30.0%
AAAAAGGTAGTCATATTTGG+TGG + chr4_1:64331052-64331071 None:intergenic 30.0%
AGCAAAAAGGTAGTCATATT+TGG + chr4_1:64331055-64331074 None:intergenic 30.0%
AACATTTACTGAATCATAGC+TGG - chr4_1:64331129-64331148 Msa0563890:CDS 30.0%
TCATTTGATATTTCTCTTGG+TGG + chr4_1:64331234-64331253 None:intergenic 30.0%
!! AAATGAGTTGGTTAAAACCA+TGG - chr4_1:64331248-64331267 Msa0563890:CDS 30.0%
TTCAAGAATCATTCATGAGT+AGG + chr4_1:64331284-64331303 None:intergenic 30.0%
AATGATTCTTGAAAATGAGG+AGG - chr4_1:64331291-64331310 Msa0563890:intron 30.0%
AATATCAGTAGCAGCAAATT+TGG - chr4_1:64331387-64331406 Msa0563890:intron 30.0%
GTTGGGTAAGTCTATATATA+TGG - chr4_1:64331547-64331566 Msa0563890:CDS 30.0%
TGTTGATATAAAGCAATCGT+AGG + chr4_1:64331586-64331605 None:intergenic 30.0%
! GCTCAATTTCTAAAGAAAGA+CGG - chr4_1:64331808-64331827 Msa0563890:intron 30.0%
AAACTAGTATCTGTCAAGTA+CGG - chr4_1:64331944-64331963 Msa0563890:intron 30.0%
CATATTCTTCTGTCAAAATC+AGG - chr4_1:64332007-64332026 Msa0563890:intron 30.0%
GTGAAACAACTAAATCTTTC+AGG + chr4_1:64332149-64332168 None:intergenic 30.0%
!! TTGTAGGAGAAAATGGATTA+TGG - chr4_1:64332297-64332316 Msa0563890:CDS 30.0%
CTGAAAAGACAAATGGAATT+GGG - chr4_1:64332340-64332359 Msa0563890:CDS 30.0%
CTTTATTGAACATGACAAGA+TGG - chr4_1:64332379-64332398 Msa0563890:CDS 30.0%
AAGAAATAAACTTGATGCTG+TGG - chr4_1:64332431-64332450 Msa0563890:CDS 30.0%
!! ACACCTTTTTCATACTTTAG+CGG - chr4_1:64332456-64332475 Msa0563890:CDS 30.0%
! TTAGACGTGTGAAGTATTAA+TGG - chr4_1:64332651-64332670 Msa0563890:CDS 30.0%
AAAGTAAATTGACAGTATGC+TGG - chr4_1:64332682-64332701 Msa0563890:CDS 30.0%
ATACAAAACCCAGTTCTCAA+AGG - chr4_1:64330385-64330404 Msa0563890:CDS 35.0%
! GTTGCATGGAATACCTATTT+TGG - chr4_1:64330495-64330514 Msa0563890:CDS 35.0%
CTTCTTACTTAATGTGAGCT+TGG - chr4_1:64330744-64330763 Msa0563890:intron 35.0%
CTTATCATGTATTTGCCTAG+CGG - chr4_1:64330827-64330846 Msa0563890:CDS 35.0%
!!! AATCATAGCTGGCCTTTTTA+TGG - chr4_1:64331140-64331159 Msa0563890:CDS 35.0%
TAGCAAAAAGGATCAACCTA+CGG + chr4_1:64331174-64331193 None:intergenic 35.0%
CTACTGAGTTCATACTTGAA+GGG + chr4_1:64331456-64331475 None:intergenic 35.0%
ACTACTGAGTTCATACTTGA+AGG + chr4_1:64331457-64331476 None:intergenic 35.0%
TCAAGTATGAACTCAGTAGT+AGG - chr4_1:64331457-64331476 Msa0563890:CDS 35.0%
AATGTGCAACATTGTTTGTG+TGG - chr4_1:64331660-64331679 Msa0563890:intron 35.0%
!!! TTGTTTGTGTGGTTTTGTAC+AGG - chr4_1:64331671-64331690 Msa0563890:intron 35.0%
AACATAAGCAGCATCTGATA+CGG + chr4_1:64331710-64331729 None:intergenic 35.0%
TATGTTCTTGAAACCATAGC+AGG - chr4_1:64331724-64331743 Msa0563890:intron 35.0%
GCATCAAAGTATATCCCAAA+AGG - chr4_1:64331778-64331797 Msa0563890:intron 35.0%
TCAAAGTATATCCCAAAAGG+TGG - chr4_1:64331781-64331800 Msa0563890:intron 35.0%
GGACTAAGAGGAAAAAGATT+AGG - chr4_1:64331829-64331848 Msa0563890:intron 35.0%
! GTGAGACTGTACTACAATTT+TGG - chr4_1:64331856-64331875 Msa0563890:intron 35.0%
! CTAGTTACCTCAACGTTTTT+AGG + chr4_1:64331918-64331937 None:intergenic 35.0%
! GTCAAGTACGGATACTTTTA+AGG - chr4_1:64331956-64331975 Msa0563890:intron 35.0%
CAACAAGAAACACCCAAAAT+TGG - chr4_1:64332200-64332219 Msa0563890:intron 35.0%
CAAGGTAGCATCTTAATTGT+AGG - chr4_1:64332281-64332300 Msa0563890:CDS 35.0%
GCTGAAAAGACAAATGGAAT+TGG - chr4_1:64332339-64332358 Msa0563890:CDS 35.0%
ATGACAAGATGGTCACAAAA+TGG - chr4_1:64332390-64332409 Msa0563890:CDS 35.0%
TGACAAGATGGTCACAAAAT+GGG - chr4_1:64332391-64332410 Msa0563890:CDS 35.0%
! ATGCCATTTGGAATTTGCTT+TGG - chr4_1:64332537-64332556 Msa0563890:CDS 35.0%
!! ATTTGCTTTGGAGGTTTGAA+AGG - chr4_1:64332549-64332568 Msa0563890:CDS 35.0%
! AGGATGTTGGAAGCATAGAA+GGG + chr4_1:64330252-64330271 None:intergenic 40.0%
! AAGGATGTTGGAAGCATAGA+AGG + chr4_1:64330253-64330272 None:intergenic 40.0%
TTCTATGCTTCCAACATCCT+TGG - chr4_1:64330252-64330271 Msa0563890:three_prime_UTR 40.0%
! CTAAGACTCCTTTGAGAACT+GGG + chr4_1:64330396-64330415 None:intergenic 40.0%
! TCTAAGACTCCTTTGAGAAC+TGG + chr4_1:64330397-64330416 None:intergenic 40.0%
AGTTCTCAAAGGAGTCTTAG+AGG - chr4_1:64330396-64330415 Msa0563890:CDS 40.0%
ATAGAGCTGATCAAGAGAGA+AGG - chr4_1:64330446-64330465 Msa0563890:CDS 40.0%
GATAAGCTAAACACTACTGC+AGG - chr4_1:64330541-64330560 Msa0563890:CDS 40.0%
TTAGCAGGTTAAGGAAAGCT+GGG - chr4_1:64330611-64330630 Msa0563890:CDS 40.0%
AAAGCTGGGGCTATCATATT+AGG - chr4_1:64330625-64330644 Msa0563890:CDS 40.0%
AAGCTGGGGCTATCATATTA+GGG - chr4_1:64330626-64330645 Msa0563890:CDS 40.0%
ACGGCTCTCTAACCATAAAA+AGG + chr4_1:64331155-64331174 None:intergenic 40.0%
! TTTTATGGTTAGAGAGCCGT+AGG - chr4_1:64331155-64331174 Msa0563890:CDS 40.0%
!! ATCCTTTTTGCTAGCTTACG+AGG - chr4_1:64331181-64331200 Msa0563890:CDS 40.0%
TGTGCAGAATCCATACACAT+TGG - chr4_1:64331333-64331352 Msa0563890:intron 40.0%
CAAGGATCATCCAATGTGTA+TGG + chr4_1:64331346-64331365 None:intergenic 40.0%
TACACATTGGATGATCCTTG+TGG - chr4_1:64331346-64331365 Msa0563890:intron 40.0%
!! TTGTGGTTCAAGTAGTGGAT+CGG - chr4_1:64331363-64331382 Msa0563890:intron 40.0%
! AATTTGGTGACTGTGTCACT+TGG - chr4_1:64331403-64331422 Msa0563890:intron 40.0%
! CATACTTGAAGGGCATAAGA+TGG + chr4_1:64331446-64331465 None:intergenic 40.0%
GTGTAATTCCAATTAGCCCA+AGG - chr4_1:64331515-64331534 Msa0563890:CDS 40.0%
! TTTTGTACAGGCCAATTTGC+AGG - chr4_1:64331683-64331702 Msa0563890:intron 40.0%
! ATTGAGCATAGCCACCTTTT+GGG + chr4_1:64331795-64331814 None:intergenic 40.0%
! AATTGAGCATAGCCACCTTT+TGG + chr4_1:64331796-64331815 None:intergenic 40.0%
!! CTAAAGAAAGACGGACTAAG+AGG - chr4_1:64331817-64331836 Msa0563890:intron 40.0%
AGCTACACCTAAAAACGTTG+AGG - chr4_1:64331908-64331927 Msa0563890:intron 40.0%
TCTGTCAAAATCAGGCAAAG+AGG - chr4_1:64332015-64332034 Msa0563890:intron 40.0%
! ATCTTTCAGGTACGCATTCA+AGG + chr4_1:64332136-64332155 None:intergenic 40.0%
TGTTTCACCAGTGAAAAGCT+TGG - chr4_1:64332161-64332180 Msa0563890:intron 40.0%
CTGCAAGCTGAAAAGACAAA+TGG - chr4_1:64332333-64332352 Msa0563890:CDS 40.0%
ACGCCGCTAAAGTATGAAAA+AGG + chr4_1:64332462-64332481 None:intergenic 40.0%
TGTTCCAGCAGGATATGAAA+AGG - chr4_1:64332512-64332531 Msa0563890:CDS 40.0%
GTTCCAGCAGGATATGAAAA+GGG - chr4_1:64332513-64332532 Msa0563890:CDS 40.0%
! TATGAAAAGGGCATGCCATT+TGG - chr4_1:64332525-64332544 Msa0563890:CDS 40.0%
CCTCCAAAGCAAATTCCAAA+TGG + chr4_1:64332543-64332562 None:intergenic 40.0%
! CCATTTGGAATTTGCTTTGG+AGG - chr4_1:64332540-64332559 Msa0563890:CDS 40.0%
AATCCACTAGCCAAGGATGT+TGG + chr4_1:64330265-64330284 None:intergenic 45.0%
GATTGAGAATCCACTAGCCA+AGG + chr4_1:64330272-64330291 None:intergenic 45.0%
!! GGCTAGTGGATTCTCAATCA+AGG - chr4_1:64330273-64330292 Msa0563890:three_prime_UTR 45.0%
! TGAAAGAGAACCTGCTGCTT+TGG + chr4_1:64330473-64330492 None:intergenic 45.0%
AAAGCAGCAGGTTCTCTTTC+AGG - chr4_1:64330472-64330491 Msa0563890:CDS 45.0%
AAGCAGCAGGTTCTCTTTCA+GGG - chr4_1:64330473-64330492 Msa0563890:CDS 45.0%
GTTAGCAGGTTAAGGAAAGC+TGG - chr4_1:64330610-64330629 Msa0563890:CDS 45.0%
TAGCAGGTTAAGGAAAGCTG+GGG - chr4_1:64330612-64330631 Msa0563890:CDS 45.0%
TGGGGCTATCATATTAGGGA+AGG - chr4_1:64330630-64330649 Msa0563890:CDS 45.0%
ACATCAGACTTTCAACCGCT+AGG + chr4_1:64330845-64330864 None:intergenic 45.0%
GGAGTAGCATCCAAATGTAC+AGG + chr4_1:64330906-64330925 None:intergenic 45.0%
GATCCTTGTGGTTCAAGTAG+TGG - chr4_1:64331358-64331377 Msa0563890:intron 45.0%
GATCCACTACTTGAACCACA+AGG + chr4_1:64331364-64331383 None:intergenic 45.0%
! TCACTTGGTACTGAAACCGA+CGG - chr4_1:64331418-64331437 Msa0563890:intron 45.0%
GTAGGCATCAAACCAACAGT+TGG - chr4_1:64331475-64331494 Msa0563890:CDS 45.0%
CTACTAGTGAGACCAACTGT+TGG + chr4_1:64331490-64331509 None:intergenic 45.0%
CAAATTGCGTTCGCAATGCA+TGG + chr4_1:64331612-64331631 None:intergenic 45.0%
TCTGATACGGTCCTGCAAAT+TGG + chr4_1:64331697-64331716 None:intergenic 45.0%
! TAAAGCGTCTATGCCTGCTA+TGG + chr4_1:64331740-64331759 None:intergenic 45.0%
! ACATCTGCCAAGCTTTTCAC+TGG + chr4_1:64332171-64332190 None:intergenic 45.0%
!! TTTAGCGGCGTACTTGCTAT+TGG - chr4_1:64332471-64332490 Msa0563890:CDS 45.0%
!! CTTGCTATTGGAGGTTATCC+TGG - chr4_1:64332483-64332502 Msa0563890:CDS 45.0%
! ATGCCCTTTTCATATCCTGC+TGG + chr4_1:64332519-64332538 None:intergenic 45.0%
CACACGTCTAACTTTCGAAG+CGG + chr4_1:64332642-64332661 None:intergenic 45.0%
!!! TTTTTATTTTCTTTTTAATT+AGG + chr4_1:64331207-64331226 None:intergenic 5.0%
CTTCCAACATCCTTGGCTAG+TGG - chr4_1:64330259-64330278 Msa0563890:three_prime_UTR 50.0%
TCTGCATGTGCTAGTGCATC+TGG + chr4_1:64330427-64330446 None:intergenic 50.0%
GGTTCTCTTTCAGGGTTGCA+TGG - chr4_1:64330481-64330500 Msa0563890:CDS 50.0%
TCAGTAGTGCCAAGAGATGC+AGG - chr4_1:64330583-64330602 Msa0563890:CDS 50.0%
CTAACTACGCCTGCATCTCT+TGG + chr4_1:64330595-64330614 None:intergenic 50.0%
CAGGCGTAGTTAGCAGGTTA+AGG - chr4_1:64330602-64330621 Msa0563890:CDS 50.0%
CTGATGTGACCACTCACTCA+GGG + chr4_1:64330659-64330678 None:intergenic 50.0%
TCTGATGTGACCACTCACTC+AGG + chr4_1:64330660-64330679 None:intergenic 50.0%
TGAGTGAGTGGTCACATCAG+AGG - chr4_1:64330659-64330678 Msa0563890:CDS 50.0%
AGGTCTAGTGAAGCTCCTAG+TGG - chr4_1:64330679-64330698 Msa0563890:intron 50.0%
CTAGTGAAGCTCCTAGTGGT+TGG - chr4_1:64330683-64330702 Msa0563890:intron 50.0%
CCTCTAGCATTCCAACCACT+AGG + chr4_1:64330697-64330716 None:intergenic 50.0%
CCTAGTGGTTGGAATGCTAG+AGG - chr4_1:64330694-64330713 Msa0563890:intron 50.0%
AGTGGTTGGAATGCTAGAGG+TGG - chr4_1:64330697-64330716 Msa0563890:intron 50.0%
TGGAATGCTAGAGGTGGACA+AGG - chr4_1:64330703-64330722 Msa0563890:intron 50.0%
TGCTAGAGGTGGACAAGGAA+AGG - chr4_1:64330708-64330727 Msa0563890:intron 50.0%
GGCCTCGTAAGCTAGCAAAA+AGG + chr4_1:64331186-64331205 None:intergenic 50.0%
GAGTAGGCAGAATGAAGCCA+TGG + chr4_1:64331268-64331287 None:intergenic 50.0%
! GTTGGTCTCACTAGTAGAGC+AGG - chr4_1:64331493-64331512 Msa0563890:CDS 50.0%
GTGTCTTGCCTTGGGCTAAT+TGG + chr4_1:64331526-64331545 None:intergenic 50.0%
ACCCAACTGTGTCTTGCCTT+GGG + chr4_1:64331534-64331553 None:intergenic 50.0%
TACCCAACTGTGTCTTGCCT+TGG + chr4_1:64331535-64331554 None:intergenic 50.0%
!!! CAGGCAAAGAGGTGCTGTTT+TGG - chr4_1:64332026-64332045 Msa0563890:intron 50.0%
CAGCTTGCAGCATGAGATCT+TGG + chr4_1:64332323-64332342 None:intergenic 50.0%
TCTAACTTTCGAAGCGGAGG+GGG + chr4_1:64332636-64332655 None:intergenic 50.0%
GTCTAACTTTCGAAGCGGAG+GGG + chr4_1:64332637-64332656 None:intergenic 50.0%
CGTCTAACTTTCGAAGCGGA+GGG + chr4_1:64332638-64332657 None:intergenic 50.0%
ACGTCTAACTTTCGAAGCGG+AGG + chr4_1:64332639-64332658 None:intergenic 50.0%
GAGAGAAGGACCAAAGCAGC+AGG - chr4_1:64330460-64330479 Msa0563890:CDS 55.0%
! GCAGGCTCTTTTGCACTGCT+TGG - chr4_1:64330559-64330578 Msa0563890:CDS 55.0%
GAGATGCAGGCGTAGTTAGC+AGG - chr4_1:64330596-64330615 Msa0563890:CDS 55.0%
ATGTGACCACTCACTCAGGG+TGG + chr4_1:64330656-64330675 None:intergenic 55.0%
AGGGCATAAGATGGAGCCGT+CGG + chr4_1:64331437-64331456 None:intergenic 55.0%
AGCCCAAGGCAAGACACAGT+TGG - chr4_1:64331529-64331548 Msa0563890:CDS 55.0%
GCCCAAGGCAAGACACAGTT+GGG - chr4_1:64331530-64331549 Msa0563890:CDS 55.0%
!! AGCGGCGTACTTGCTATTGG+AGG - chr4_1:64332474-64332493 Msa0563890:CDS 55.0%
CCTGCTGGAACAATGACTCC+AGG + chr4_1:64332504-64332523 None:intergenic 55.0%
CCTGGAGTCATTGTTCCAGC+AGG - chr4_1:64332501-64332520 Msa0563890:CDS 55.0%
GGAAGGCCACCCTGAGTGAG+TGG - chr4_1:64330647-64330666 Msa0563890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 64330179 64332810 64330179 ID=Msa0563890;Name=Msa0563890
chr4_1 mRNA 64330179 64332810 64330179 ID=Msa0563890-mRNA-1;Parent=Msa0563890;Name=Msa0563890-mRNA-1;_AED=0.40;_eAED=0.40;_QI=5|1|1|1|1|1|5|148|515
chr4_1 exon 64330179 64330686 64330179 ID=Msa0563890-mRNA-1:exon:20585;Parent=Msa0563890-mRNA-1
chr4_1 exon 64330768 64330960 64330768 ID=Msa0563890-mRNA-1:exon:20584;Parent=Msa0563890-mRNA-1
chr4_1 exon 64331060 64331296 64331060 ID=Msa0563890-mRNA-1:exon:20583;Parent=Msa0563890-mRNA-1
chr4_1 exon 64331438 64331649 64331438 ID=Msa0563890-mRNA-1:exon:20582;Parent=Msa0563890-mRNA-1
chr4_1 exon 64332260 64332810 64332260 ID=Msa0563890-mRNA-1:exon:20581;Parent=Msa0563890-mRNA-1
chr4_1 five_prime_UTR 64332806 64332810 64332806 ID=Msa0563890-mRNA-1:five_prime_utr;Parent=Msa0563890-mRNA-1
chr4_1 CDS 64332260 64332805 64332260 ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1
chr4_1 CDS 64331438 64331649 64331438 ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1
chr4_1 CDS 64331060 64331296 64331060 ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1
chr4_1 CDS 64330768 64330960 64330768 ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1
chr4_1 CDS 64330327 64330686 64330327 ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1
chr4_1 three_prime_UTR 64330179 64330326 64330179 ID=Msa0563890-mRNA-1:three_prime_utr;Parent=Msa0563890-mRNA-1
Gene Sequence

>Msa0563890

ATGGACTCAGCACGTGCTTGCTCTTTCTTCAAGTTCCTTTCCATAATACTTCTGTTAGTTACATTCCCTTCTATGCTTCCAACATCCTTGGCTAGTGGATTCTCAATCAAGGAAGCAACAGTGCAAGATCTTCAACTTGCTTTCCAAAGAAAGCAGTTAACATCAAGACAACTTGTTGAATTCTACCTGAAACAAATCAAAATACAAAACCCAGTTCTCAAAGGAGTCTTAGAGGTGAATCCAGATGCACTAGCACATGCAGATAGAGCTGATCAAGAGAGAAGGACCAAAGCAGCAGGTTCTCTTTCAGGGTTGCATGGAATACCTATTTTGGTTAAGGATAACATTGCAACTAAGGATAAGCTAAACACTACTGCAGGCTCTTTTGCACTGCTTGGCTCAGTAGTGCCAAGAGATGCAGGCGTAGTTAGCAGGTTAAGGAAAGCTGGGGCTATCATATTAGGGAAGGCCACCCTGAGTGAGTGGTCACATCAGAGGTCTAGTGAAGCTCCTAGTGGTTGGAATGCTAGAGGTGGACAAGGAAAGAATCCATACACATTGGATGATCCTTGTGGTTCAAGTAGTGGATCGGCAATATCAGTAGCAGCAAATTTGGTGACTGTGTCACTTGGTACTGAAACCGACGGCTCCATCTTATGCCCTTCAAGTATGAACTCAGTAGTAGGCATCAAACCAACAGTTGGTCTCACTAGTAGAGCAGGTGTAATTCCAATTAGCCCAAGGCAAGACACAGTTGGGCCAATTTGCAGGACCGTATCAGATGCTGCTTATGTTCTTGAAACCATAGCAGGCATAGACGCTTTAGATAAGAAAACAATTGAAGCATCAAAGTATATCCCAAAAGGTGGCTATGCTCAATTTCTAAAGAAAGACGGACTAAGAGGAAAAAGATTAGGAGTAGTGAGACTGTACTACAATTTTGGAAATGACACTTTTCTGCATGAAACTTTCAAGCTACACCTAAAAACGTTGAGGCAAAGAGGTGCTGTTTTGGTTGACGATTTGAAGATTGATAACATTGATCAAATTATCAGTGGTCAAAGTGAAGAGATTGCTTTGAATTTTGAATTCAAAATATCCTTGAATGCGTACCTGAAAGATTTAGTTGTTTCACCAGTGAAAAGCTTGGCAGATGTGATAGTCTTCAACAAGAAACACCCAAAATTGGAGAAAATGGATTATGGCCAAGATCTCATGCTGCAAGCTGAAAAGACAAATGGAATTGGGAAAGCAGAGAAACAAGCTTTATTGAACATGACAAGATGGTCACAAAATGGGTTTGAGAAACTGATGAAAAGAAATAAACTTGATGCTGTGGTAACACCTTTTTCATACTTTAGCGGCGTACTTGCTATTGGAGGTTATCCTGGAGTCATTGTTCCAGCAGGATATGAAAAGGGCATGCCATTTGGAATTTGCTTTGGAGGTTTGAAAGGCTCAGAGCCGAAGTTAATTGAAATTGCTTATTCATTTGAACAAGCAACTTTGATCAGAAATCCCCCTCCGCTTCGAAAGTTAGACGTGTGA

Protein sequence

>Msa0563890

MDSARACSFFKFLSIILLLVTFPSMLPTSLASGFSIKEATVQDLQLAFQRKQLTSRQLVEFYLKQIKIQNPVLKGVLEVNPDALAHADRADQERRTKAAGSLSGLHGIPILVKDNIATKDKLNTTAGSFALLGSVVPRDAGVVSRLRKAGAIILGKATLSEWSHQRSSEAPSGWNARGGQGKNPYTLDDPCGSSSGSAISVAANLVTVSLGTETDGSILCPSSMNSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAAYVLETIAGIDALDKKTIEASKYIPKGGYAQFLKKDGLRGKRLGVVRLYYNFGNDTFLHETFKLHLKTLRQRGAVLVDDLKIDNIDQIISGQSEEIALNFEFKISLNAYLKDLVVSPVKSLADVIVFNKKHPKLEKMDYGQDLMLQAEKTNGIGKAEKQALLNMTRWSQNGFEKLMKRNKLDAVVTPFSYFSGVLAIGGYPGVIVPAGYEKGMPFGICFGGLKGSEPKLIEIAYSFEQATLIRNPPPLRKLDV*