Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0563890 | PNX73943.1 | 88.566 | 516 | 58 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0563890 | sp|A0A1P8B760|AMI4G_ARATH | 60.887 | 496 | 180 | 5 | 18 | 508 | 22 | 508 | 0.0 | 567 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0563890 | A0A2K3L609 | 88.566 | 516 | 58 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0563890 | Msa1306800 | 0.814817 | 1.270152e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0563890 | MtrunA17_Chr8g0377691 | 87.767 | 515 | 63 | 0 | 1 | 515 | 1 | 515 | 0.0 | 919 |
Msa0563890 | MtrunA17_Chr8g0377701 | 87.160 | 514 | 65 | 1 | 1 | 513 | 1 | 514 | 0.0 | 909 |
Msa0563890 | MtrunA17_Chr8g0377651 | 85.493 | 517 | 69 | 2 | 1 | 515 | 3 | 515 | 0.0 | 907 |
Msa0563890 | MtrunA17_Chr8g0377641 | 85.465 | 516 | 71 | 2 | 1 | 515 | 1 | 513 | 0.0 | 902 |
Msa0563890 | MtrunA17_Chr8g0377681 | 83.757 | 511 | 82 | 1 | 6 | 515 | 3 | 513 | 0.0 | 878 |
Msa0563890 | MtrunA17_Chr4g0037521 | 58.648 | 503 | 197 | 8 | 13 | 508 | 9 | 507 | 0.0 | 561 |
Msa0563890 | MtrunA17_Chr4g0037491 | 56.908 | 304 | 119 | 7 | 205 | 499 | 1 | 301 | 7.73e-113 | 336 |
Msa0563890 | MtrunA17_Chr8g0377661 | 88.462 | 78 | 9 | 0 | 438 | 515 | 1 | 78 | 6.81e-42 | 144 |
Msa0563890 | MtrunA17_Chr4g0037501 | 65.957 | 94 | 30 | 2 | 105 | 196 | 2 | 95 | 1.43e-30 | 114 |
Msa0563890 | MtrunA17_Chr8g0385461 | 32.530 | 249 | 153 | 6 | 40 | 287 | 162 | 396 | 1.52e-30 | 125 |
Msa0563890 | MtrunA17_Chr3g0097801 | 33.086 | 269 | 171 | 5 | 44 | 309 | 46 | 308 | 1.31e-26 | 113 |
Msa0563890 | MtrunA17_Chr2g0279961 | 29.617 | 287 | 189 | 6 | 32 | 313 | 121 | 399 | 4.77e-23 | 102 |
Msa0563890 | MtrunA17_Chr3g0130801 | 25.052 | 483 | 317 | 19 | 40 | 503 | 200 | 656 | 1.51e-18 | 89.0 |
Msa0563890 | MtrunA17_Chr1g0191741 | 39.496 | 119 | 66 | 2 | 140 | 257 | 63 | 176 | 6.85e-15 | 76.6 |
Msa0563890 | MtrunA17_Chr8g0384851 | 28.516 | 256 | 166 | 6 | 26 | 271 | 117 | 365 | 9.15e-13 | 70.9 |
Msa0563890 | MtrunA17_Chr4g0050371 | 34.507 | 142 | 87 | 2 | 138 | 278 | 107 | 243 | 6.01e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0563890 | AT4G34880.2 | 60.887 | 496 | 180 | 5 | 18 | 508 | 22 | 508 | 0.0 | 567 |
Msa0563890 | AT4G34880.1 | 53.535 | 495 | 172 | 5 | 18 | 508 | 22 | 462 | 3.19e-175 | 502 |
Msa0563890 | AT5G07360.1 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 1.13e-28 | 120 |
Msa0563890 | AT5G07360.3 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 1.13e-28 | 120 |
Msa0563890 | AT5G07360.2 | 32.099 | 243 | 147 | 6 | 40 | 281 | 204 | 429 | 1.46e-25 | 111 |
Msa0563890 | AT3G25660.1 | 32.881 | 295 | 181 | 8 | 52 | 340 | 57 | 340 | 1.79e-25 | 110 |
Msa0563890 | AT5G64440.1 | 27.740 | 292 | 187 | 8 | 35 | 317 | 125 | 401 | 3.69e-19 | 91.3 |
Msa0563890 | AT1G08980.1 | 42.017 | 119 | 63 | 2 | 140 | 257 | 64 | 177 | 7.45e-16 | 80.1 |
Msa0563890 | AT5G09420.1 | 38.462 | 117 | 66 | 2 | 138 | 253 | 105 | 216 | 1.85e-11 | 67.0 |
Find 120 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATATATACTCACCAATTT+TGG | 0.124167 | 4_1:+64330754 | None:intergenic |
GTGAGACTGTACTACAATTT+TGG | 0.196580 | 4_1:-64331111 | Msa0563890:CDS |
TTAGACGTGTGAAGTATTAA+TGG | 0.221070 | 4_1:-64330316 | Msa0563890:exon |
GTTGCATGGAATACCTATTT+TGG | 0.222876 | 4_1:-64332472 | Msa0563890:CDS |
AAAGCTGGGGCTATCATATT+AGG | 0.224800 | 4_1:-64332342 | Msa0563890:CDS |
GTGAAACAACTAAATCTTTC+AGG | 0.228755 | 4_1:+64330821 | None:intergenic |
AAAGCAGCAGGTTCTCTTTC+AGG | 0.230296 | 4_1:-64332495 | Msa0563890:CDS |
ATCTTAATTGTAGGAGAAAA+TGG | 0.251388 | 4_1:-64330677 | Msa0563890:intron |
CAGGCAAAGAGGTGCTGTTT+TGG | 0.279043 | 4_1:-64330941 | Msa0563890:CDS |
ATGACAAGATGGTCACAAAA+TGG | 0.286173 | 4_1:-64330577 | Msa0563890:CDS |
GTGTCTTGCCTTGGGCTAAT+TGG | 0.286345 | 4_1:+64331444 | None:intergenic |
TTGATGTTAACTGCTTTCTT+TGG | 0.290637 | 4_1:+64332640 | None:intergenic |
TGTAACTAACAGAAGTATTA+TGG | 0.292613 | 4_1:+64332743 | None:intergenic |
AATATCAGTAGCAGCAAATT+TGG | 0.294381 | 4_1:-64331580 | Msa0563890:CDS |
AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+64331174 | None:intergenic |
CAACAAGAAACACCCAAAAT+TGG | 0.311801 | 4_1:-64330767 | Msa0563890:intron |
ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+64332459 | None:intergenic |
CAGCTTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:+64330647 | None:intergenic |
TTGTAGGAGAAAATGGATTA+TGG | 0.330000 | 4_1:-64330670 | Msa0563890:intron |
CCATTTGGAATTTGCTTTGG+AGG | 0.345917 | 4_1:-64330427 | Msa0563890:CDS |
AAGGATGTTGGAAGCATAGA+AGG | 0.345981 | 4_1:+64332717 | None:intergenic |
TCTGCATGTGCTAGTGCATC+TGG | 0.346984 | 4_1:+64332543 | None:intergenic |
TACCCAACTGTGTCTTGCCT+TGG | 0.349156 | 4_1:+64331435 | None:intergenic |
GCTGAAAAGACAAATGGAAT+TGG | 0.352248 | 4_1:-64330628 | Msa0563890:CDS |
TCTGATACGGTCCTGCAAAT+TGG | 0.353309 | 4_1:+64331273 | None:intergenic |
ACGCCGCTAAAGTATGAAAA+AGG | 0.370786 | 4_1:+64330508 | None:intergenic |
ACCCAACTGTGTCTTGCCTT+GGG | 0.375767 | 4_1:+64331436 | None:intergenic |
TGAAAGAGAACCTGCTGCTT+TGG | 0.377922 | 4_1:+64332497 | None:intergenic |
ATGCCATTTGGAATTTGCTT+TGG | 0.378888 | 4_1:-64330430 | Msa0563890:CDS |
TTTAGCGGCGTACTTGCTAT+TGG | 0.387009 | 4_1:-64330496 | Msa0563890:CDS |
TCTAAGACTCCTTTGAGAAC+TGG | 0.389957 | 4_1:+64332573 | None:intergenic |
TATGAAAAGGGCATGCCATT+TGG | 0.394570 | 4_1:-64330442 | Msa0563890:CDS |
ATCTTTCAGGTACGCATTCA+AGG | 0.401034 | 4_1:+64330834 | None:intergenic |
CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:-64330484 | Msa0563890:CDS |
TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:-64332448 | Msa0563890:CDS |
AAGCAGCAGGTTCTCTTTCA+GGG | 0.420978 | 4_1:-64332494 | Msa0563890:CDS |
TTCTATGCTTCCAACATCCT+TGG | 0.422281 | 4_1:-64332715 | Msa0563890:CDS |
CTAAGACTCCTTTGAGAACT+GGG | 0.435475 | 4_1:+64332574 | None:intergenic |
CTGAAAAGACAAATGGAATT+GGG | 0.436484 | 4_1:-64330627 | Msa0563890:CDS |
CTAACTACGCCTGCATCTCT+TGG | 0.436953 | 4_1:+64332375 | None:intergenic |
CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4_1:+64331624 | None:intergenic |
CAGGCGTAGTTAGCAGGTTA+AGG | 0.451006 | 4_1:-64332365 | Msa0563890:CDS |
AAGCTGGGGCTATCATATTA+GGG | 0.457207 | 4_1:-64332341 | Msa0563890:CDS |
GTTAGCAGGTTAAGGAAAGC+TGG | 0.462043 | 4_1:-64332357 | Msa0563890:CDS |
GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:-64331437 | Msa0563890:intron |
ACTACTGAGTTCATACTTGA+AGG | 0.474985 | 4_1:+64331513 | None:intergenic |
AGTTCTCAAAGGAGTCTTAG+AGG | 0.475499 | 4_1:-64332571 | Msa0563890:CDS |
TGACAAGATGGTCACAAAAT+GGG | 0.477152 | 4_1:-64330576 | Msa0563890:CDS |
TCAAGTATGAACTCAGTAGT+AGG | 0.480266 | 4_1:-64331510 | Msa0563890:CDS |
GAGATGCAGGCGTAGTTAGC+AGG | 0.483944 | 4_1:-64332371 | Msa0563890:CDS |
AGCGGCGTACTTGCTATTGG+AGG | 0.487808 | 4_1:-64330493 | Msa0563890:CDS |
TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:-64330455 | Msa0563890:CDS |
ATTTGCTTTGGAGGTTTGAA+AGG | 0.493826 | 4_1:-64330418 | Msa0563890:CDS |
CTGCAAGCTGAAAAGACAAA+TGG | 0.495604 | 4_1:-64330634 | Msa0563890:CDS |
AAAGTAAATTGACAGTATGC+TGG | 0.506247 | 4_1:-64330285 | Msa0563890:three_prime_UTR |
TCAGTAGTGCCAAGAGATGC+AGG | 0.512594 | 4_1:-64332384 | Msa0563890:CDS |
TAAGCAATTTCAATTAACTT+CGG | 0.513290 | 4_1:+64330388 | None:intergenic |
GGTTCTCTTTCAGGGTTGCA+TGG | 0.513466 | 4_1:-64332486 | Msa0563890:CDS |
CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4_1:-64331150 | Msa0563890:CDS |
CCTGGAGTCATTGTTCCAGC+AGG | 0.517601 | 4_1:-64330466 | Msa0563890:CDS |
GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:-64331189 | Msa0563890:CDS |
TTAGCAGGTTAAGGAAAGCT+GGG | 0.522406 | 4_1:-64332356 | Msa0563890:CDS |
CATACTTGAAGGGCATAAGA+TGG | 0.523653 | 4_1:+64331524 | None:intergenic |
CTTCCAACATCCTTGGCTAG+TGG | 0.524164 | 4_1:-64332708 | Msa0563890:CDS |
TCTGATGTGACCACTCACTC+AGG | 0.535215 | 4_1:+64332310 | None:intergenic |
CCTCCAAAGCAAATTCCAAA+TGG | 0.541500 | 4_1:+64330427 | None:intergenic |
TCTAACTTTCGAAGCGGAGG+GGG | 0.541662 | 4_1:+64330334 | None:intergenic |
GAGAGAAGGACCAAAGCAGC+AGG | 0.543175 | 4_1:-64332507 | Msa0563890:CDS |
CTACTGAGTTCATACTTGAA+GGG | 0.545399 | 4_1:+64331514 | None:intergenic |
GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4_1:-64331609 | Msa0563890:CDS |
GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:-64332426 | Msa0563890:CDS |
TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:-64331243 | Msa0563890:CDS |
GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-64332694 | Msa0563890:CDS |
AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:-64331438 | Msa0563890:CDS |
CTTTATTGAACATGACAAGA+TGG | 0.556585 | 4_1:-64330588 | Msa0563890:CDS |
CCTGCTGGAACAATGACTCC+AGG | 0.556829 | 4_1:+64330466 | None:intergenic |
GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:-64331474 | Msa0563890:CDS |
AATCCACTAGCCAAGGATGT+TGG | 0.560632 | 4_1:+64332705 | None:intergenic |
CTAGTGAAGCTCCTAGTGGT+TGG | 0.561059 | 4_1:-64332284 | Msa0563890:CDS |
GTTCCAGCAGGATATGAAAA+GGG | 0.561856 | 4_1:-64330454 | Msa0563890:CDS |
TGCTAGAGGTGGACAAGGAA+AGG | 0.563245 | 4_1:-64332259 | Msa0563890:intron |
AACATAAGCAGCATCTGATA+CGG | 0.572591 | 4_1:+64331260 | None:intergenic |
TAAAGCGTCTATGCCTGCTA+TGG | 0.572957 | 4_1:+64331230 | None:intergenic |
GTTTCAACTTTCAAGACACA+TGG | 0.578997 | 4_1:-64332802 | None:intergenic |
TGTTTCACCAGTGAAAAGCT+TGG | 0.582494 | 4_1:-64330806 | Msa0563890:CDS |
GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:-64331159 | Msa0563890:CDS |
AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:-64330536 | Msa0563890:CDS |
ACGTCTAACTTTCGAAGCGG+AGG | 0.595273 | 4_1:+64330331 | None:intergenic |
CGTCTAACTTTCGAAGCGGA+GGG | 0.597901 | 4_1:+64330332 | None:intergenic |
GATTGAGAATCCACTAGCCA+AGG | 0.599130 | 4_1:+64332698 | None:intergenic |
CTGATGTGACCACTCACTCA+GGG | 0.604738 | 4_1:+64332311 | None:intergenic |
TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4_1:-64331604 | Msa0563890:CDS |
ATACAAAACCCAGTTCTCAA+AGG | 0.608040 | 4_1:-64332582 | Msa0563890:CDS |
GTCTAACTTTCGAAGCGGAG+GGG | 0.616099 | 4_1:+64330333 | None:intergenic |
TCTGTCAAAATCAGGCAAAG+AGG | 0.616368 | 4_1:-64330952 | Msa0563890:intron |
GGAAGGCCACCCTGAGTGAG+TGG | 0.620599 | 4_1:-64332320 | Msa0563890:CDS |
CCTCTAGCATTCCAACCACT+AGG | 0.623602 | 4_1:+64332273 | None:intergenic |
CCTAGTGGTTGGAATGCTAG+AGG | 0.624711 | 4_1:-64332273 | Msa0563890:CDS |
AACATTGATCAAATTATCAG+TGG | 0.625881 | 4_1:-64330898 | Msa0563890:CDS |
TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:-64331186 | Msa0563890:CDS |
TGGGGCTATCATATTAGGGA+AGG | 0.630660 | 4_1:-64332337 | Msa0563890:CDS |
CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:+64331480 | None:intergenic |
ATAGAGCTGATCAAGAGAGA+AGG | 0.635895 | 4_1:-64332521 | Msa0563890:CDS |
CTAACAGAAGTATTATGGAA+AGG | 0.639092 | 4_1:+64332748 | None:intergenic |
AGGGCATAAGATGGAGCCGT+CGG | 0.639961 | 4_1:+64331533 | None:intergenic |
TGAGTGAGTGGTCACATCAG+AGG | 0.640749 | 4_1:-64332308 | Msa0563890:CDS |
TGGAATGCTAGAGGTGGACA+AGG | 0.642036 | 4_1:-64332264 | Msa0563890:CDS |
AGGATGTTGGAAGCATAGAA+GGG | 0.642867 | 4_1:+64332718 | None:intergenic |
AATTTGGTGACTGTGTCACT+TGG | 0.645354 | 4_1:-64331564 | Msa0563890:CDS |
GTAGGCATCAAACCAACAGT+TGG | 0.645953 | 4_1:-64331492 | Msa0563890:CDS |
GTGTAATTCCAATTAGCCCA+AGG | 0.647537 | 4_1:-64331452 | Msa0563890:CDS |
AGTGGTTGGAATGCTAGAGG+TGG | 0.654914 | 4_1:-64332270 | Msa0563890:CDS |
TACACATTGGATGATCCTTG+TGG | 0.659008 | 4_1:-64331621 | Msa0563890:CDS |
CACACGTCTAACTTTCGAAG+CGG | 0.659578 | 4_1:+64330328 | None:intergenic |
AGGTCTAGTGAAGCTCCTAG+TGG | 0.675570 | 4_1:-64332288 | Msa0563890:CDS |
ATGTGACCACTCACTCAGGG+TGG | 0.680087 | 4_1:+64332314 | None:intergenic |
TCACTTGGTACTGAAACCGA+CGG | 0.682947 | 4_1:-64331549 | Msa0563890:CDS |
TAGCAGGTTAAGGAAAGCTG+GGG | 0.692722 | 4_1:-64332355 | Msa0563890:CDS |
TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:-64331634 | Msa0563890:intron |
GATCCACTACTTGAACCACA+AGG | 0.767744 | 4_1:+64331606 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGTCTTTTATATATATTAT+GGG | + | chr4_1:64332785-64332804 | None:intergenic | 10.0% |
!!! | TTAGTCTTTTATATATATTA+TGG | + | chr4_1:64332786-64332805 | None:intergenic | 10.0% |
!! | TCATAAGAAAATAAACAAAA+GGG | + | chr4_1:64332249-64332268 | None:intergenic | 15.0% |
!! | TTCATAAGAAAATAAACAAA+AGG | + | chr4_1:64332250-64332269 | None:intergenic | 15.0% |
!! | TTATGAATTAATATTGATCA+AGG | - | chr4_1:64332263-64332282 | Msa0563890:CDS | 15.0% |
!!! | ATGTAATTTTAAGACTATAT+TGG | - | chr4_1:64332750-64332769 | Msa0563890:CDS | 15.0% |
!!! | TTTGTATTTTGATTTGTTTC+AGG | + | chr4_1:64330372-64330391 | None:intergenic | 20.0% |
!! | CTTATACTTATAATTGAGTA+TGG | + | chr4_1:64330931-64330950 | None:intergenic | 20.0% |
!! | AGACTAAAATATAAGCAAAA+AGG | + | chr4_1:64331068-64331087 | None:intergenic | 20.0% |
!!! | TTATTTTTTGACTTGCAATT+AGG | + | chr4_1:64331111-64331130 | None:intergenic | 20.0% |
!!! | TATATATACTCACCAATTTT+GGG | + | chr4_1:64332215-64332234 | None:intergenic | 20.0% |
!!! | ATATATATACTCACCAATTT+TGG | + | chr4_1:64332216-64332235 | None:intergenic | 20.0% |
!! | CATAAGAAAATAAACAAAAG+GGG | + | chr4_1:64332248-64332267 | None:intergenic | 20.0% |
!! | TAAGCAATTTCAATTAACTT+CGG | + | chr4_1:64332582-64332601 | None:intergenic | 20.0% |
!!! | CTTTTATATATATTATGGGT+TGG | + | chr4_1:64332781-64332800 | None:intergenic | 20.0% |
!!! | TGTAACTAACAGAAGTATTA+TGG | + | chr4_1:64330227-64330246 | None:intergenic | 25.0% |
! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:64330511-64330530 | None:intergenic | 25.0% |
! | TACTTATAATTGAGTATGGA+GGG | + | chr4_1:64330927-64330946 | None:intergenic | 25.0% |
! | ATACTTATAATTGAGTATGG+AGG | + | chr4_1:64330928-64330947 | None:intergenic | 25.0% |
! | TACACACAAACTAAAAATAG+TGG | - | chr4_1:64330959-64330978 | Msa0563890:intron | 25.0% |
! | AACTCATTTGATATTTCTCT+TGG | + | chr4_1:64331237-64331256 | None:intergenic | 25.0% |
! | AAGAGAAATATCAAATGAGT+TGG | - | chr4_1:64331236-64331255 | Msa0563890:CDS | 25.0% |
! | ATGAATGATTCTTGAAAATG+AGG | - | chr4_1:64331288-64331307 | Msa0563890:intron | 25.0% |
! | AGTCTATATATATGGCAAAT+TGG | - | chr4_1:64331555-64331574 | Msa0563890:CDS | 25.0% |
!! | TAGATAAATGTCTTTTGACA+GGG | + | chr4_1:64331635-64331654 | None:intergenic | 25.0% |
!! | ATAGATAAATGTCTTTTGAC+AGG | + | chr4_1:64331636-64331655 | None:intergenic | 25.0% |
! | AACATTGATCAAATTATCAG+TGG | - | chr4_1:64332069-64332088 | Msa0563890:intron | 25.0% |
! | ATCTTAATTGTAGGAGAAAA+TGG | - | chr4_1:64332290-64332309 | Msa0563890:CDS | 25.0% |
!! | CTAACAGAAGTATTATGGAA+AGG | + | chr4_1:64330222-64330241 | None:intergenic | 30.0% |
TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:64330330-64330349 | None:intergenic | 30.0% | |
!!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:64330501-64330520 | Msa0563890:CDS | 30.0% |
TAAGGATAACATTGCAACTA+AGG | - | chr4_1:64330519-64330538 | Msa0563890:CDS | 30.0% | |
TTTACGTATTCCTGTACATT+TGG | - | chr4_1:64330893-64330912 | Msa0563890:CDS | 30.0% | |
CCAAAATACAAGCAAAACTT+AGG | + | chr4_1:64331028-64331047 | None:intergenic | 30.0% | |
! | CCTAAGTTTTGCTTGTATTT+TGG | - | chr4_1:64331025-64331044 | Msa0563890:intron | 30.0% |
AAAAAGGTAGTCATATTTGG+TGG | + | chr4_1:64331052-64331071 | None:intergenic | 30.0% | |
AGCAAAAAGGTAGTCATATT+TGG | + | chr4_1:64331055-64331074 | None:intergenic | 30.0% | |
AACATTTACTGAATCATAGC+TGG | - | chr4_1:64331129-64331148 | Msa0563890:CDS | 30.0% | |
TCATTTGATATTTCTCTTGG+TGG | + | chr4_1:64331234-64331253 | None:intergenic | 30.0% | |
!! | AAATGAGTTGGTTAAAACCA+TGG | - | chr4_1:64331248-64331267 | Msa0563890:CDS | 30.0% |
TTCAAGAATCATTCATGAGT+AGG | + | chr4_1:64331284-64331303 | None:intergenic | 30.0% | |
AATGATTCTTGAAAATGAGG+AGG | - | chr4_1:64331291-64331310 | Msa0563890:intron | 30.0% | |
AATATCAGTAGCAGCAAATT+TGG | - | chr4_1:64331387-64331406 | Msa0563890:intron | 30.0% | |
GTTGGGTAAGTCTATATATA+TGG | - | chr4_1:64331547-64331566 | Msa0563890:CDS | 30.0% | |
TGTTGATATAAAGCAATCGT+AGG | + | chr4_1:64331586-64331605 | None:intergenic | 30.0% | |
! | GCTCAATTTCTAAAGAAAGA+CGG | - | chr4_1:64331808-64331827 | Msa0563890:intron | 30.0% |
AAACTAGTATCTGTCAAGTA+CGG | - | chr4_1:64331944-64331963 | Msa0563890:intron | 30.0% | |
CATATTCTTCTGTCAAAATC+AGG | - | chr4_1:64332007-64332026 | Msa0563890:intron | 30.0% | |
GTGAAACAACTAAATCTTTC+AGG | + | chr4_1:64332149-64332168 | None:intergenic | 30.0% | |
!! | TTGTAGGAGAAAATGGATTA+TGG | - | chr4_1:64332297-64332316 | Msa0563890:CDS | 30.0% |
CTGAAAAGACAAATGGAATT+GGG | - | chr4_1:64332340-64332359 | Msa0563890:CDS | 30.0% | |
CTTTATTGAACATGACAAGA+TGG | - | chr4_1:64332379-64332398 | Msa0563890:CDS | 30.0% | |
AAGAAATAAACTTGATGCTG+TGG | - | chr4_1:64332431-64332450 | Msa0563890:CDS | 30.0% | |
!! | ACACCTTTTTCATACTTTAG+CGG | - | chr4_1:64332456-64332475 | Msa0563890:CDS | 30.0% |
! | TTAGACGTGTGAAGTATTAA+TGG | - | chr4_1:64332651-64332670 | Msa0563890:CDS | 30.0% |
AAAGTAAATTGACAGTATGC+TGG | - | chr4_1:64332682-64332701 | Msa0563890:CDS | 30.0% | |
ATACAAAACCCAGTTCTCAA+AGG | - | chr4_1:64330385-64330404 | Msa0563890:CDS | 35.0% | |
! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:64330495-64330514 | Msa0563890:CDS | 35.0% |
CTTCTTACTTAATGTGAGCT+TGG | - | chr4_1:64330744-64330763 | Msa0563890:intron | 35.0% | |
CTTATCATGTATTTGCCTAG+CGG | - | chr4_1:64330827-64330846 | Msa0563890:CDS | 35.0% | |
!!! | AATCATAGCTGGCCTTTTTA+TGG | - | chr4_1:64331140-64331159 | Msa0563890:CDS | 35.0% |
TAGCAAAAAGGATCAACCTA+CGG | + | chr4_1:64331174-64331193 | None:intergenic | 35.0% | |
CTACTGAGTTCATACTTGAA+GGG | + | chr4_1:64331456-64331475 | None:intergenic | 35.0% | |
ACTACTGAGTTCATACTTGA+AGG | + | chr4_1:64331457-64331476 | None:intergenic | 35.0% | |
TCAAGTATGAACTCAGTAGT+AGG | - | chr4_1:64331457-64331476 | Msa0563890:CDS | 35.0% | |
AATGTGCAACATTGTTTGTG+TGG | - | chr4_1:64331660-64331679 | Msa0563890:intron | 35.0% | |
!!! | TTGTTTGTGTGGTTTTGTAC+AGG | - | chr4_1:64331671-64331690 | Msa0563890:intron | 35.0% |
AACATAAGCAGCATCTGATA+CGG | + | chr4_1:64331710-64331729 | None:intergenic | 35.0% | |
TATGTTCTTGAAACCATAGC+AGG | - | chr4_1:64331724-64331743 | Msa0563890:intron | 35.0% | |
GCATCAAAGTATATCCCAAA+AGG | - | chr4_1:64331778-64331797 | Msa0563890:intron | 35.0% | |
TCAAAGTATATCCCAAAAGG+TGG | - | chr4_1:64331781-64331800 | Msa0563890:intron | 35.0% | |
GGACTAAGAGGAAAAAGATT+AGG | - | chr4_1:64331829-64331848 | Msa0563890:intron | 35.0% | |
! | GTGAGACTGTACTACAATTT+TGG | - | chr4_1:64331856-64331875 | Msa0563890:intron | 35.0% |
! | CTAGTTACCTCAACGTTTTT+AGG | + | chr4_1:64331918-64331937 | None:intergenic | 35.0% |
! | GTCAAGTACGGATACTTTTA+AGG | - | chr4_1:64331956-64331975 | Msa0563890:intron | 35.0% |
CAACAAGAAACACCCAAAAT+TGG | - | chr4_1:64332200-64332219 | Msa0563890:intron | 35.0% | |
CAAGGTAGCATCTTAATTGT+AGG | - | chr4_1:64332281-64332300 | Msa0563890:CDS | 35.0% | |
GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:64332339-64332358 | Msa0563890:CDS | 35.0% | |
ATGACAAGATGGTCACAAAA+TGG | - | chr4_1:64332390-64332409 | Msa0563890:CDS | 35.0% | |
TGACAAGATGGTCACAAAAT+GGG | - | chr4_1:64332391-64332410 | Msa0563890:CDS | 35.0% | |
! | ATGCCATTTGGAATTTGCTT+TGG | - | chr4_1:64332537-64332556 | Msa0563890:CDS | 35.0% |
!! | ATTTGCTTTGGAGGTTTGAA+AGG | - | chr4_1:64332549-64332568 | Msa0563890:CDS | 35.0% |
! | AGGATGTTGGAAGCATAGAA+GGG | + | chr4_1:64330252-64330271 | None:intergenic | 40.0% |
! | AAGGATGTTGGAAGCATAGA+AGG | + | chr4_1:64330253-64330272 | None:intergenic | 40.0% |
TTCTATGCTTCCAACATCCT+TGG | - | chr4_1:64330252-64330271 | Msa0563890:three_prime_UTR | 40.0% | |
! | CTAAGACTCCTTTGAGAACT+GGG | + | chr4_1:64330396-64330415 | None:intergenic | 40.0% |
! | TCTAAGACTCCTTTGAGAAC+TGG | + | chr4_1:64330397-64330416 | None:intergenic | 40.0% |
AGTTCTCAAAGGAGTCTTAG+AGG | - | chr4_1:64330396-64330415 | Msa0563890:CDS | 40.0% | |
ATAGAGCTGATCAAGAGAGA+AGG | - | chr4_1:64330446-64330465 | Msa0563890:CDS | 40.0% | |
GATAAGCTAAACACTACTGC+AGG | - | chr4_1:64330541-64330560 | Msa0563890:CDS | 40.0% | |
TTAGCAGGTTAAGGAAAGCT+GGG | - | chr4_1:64330611-64330630 | Msa0563890:CDS | 40.0% | |
AAAGCTGGGGCTATCATATT+AGG | - | chr4_1:64330625-64330644 | Msa0563890:CDS | 40.0% | |
AAGCTGGGGCTATCATATTA+GGG | - | chr4_1:64330626-64330645 | Msa0563890:CDS | 40.0% | |
ACGGCTCTCTAACCATAAAA+AGG | + | chr4_1:64331155-64331174 | None:intergenic | 40.0% | |
! | TTTTATGGTTAGAGAGCCGT+AGG | - | chr4_1:64331155-64331174 | Msa0563890:CDS | 40.0% |
!! | ATCCTTTTTGCTAGCTTACG+AGG | - | chr4_1:64331181-64331200 | Msa0563890:CDS | 40.0% |
TGTGCAGAATCCATACACAT+TGG | - | chr4_1:64331333-64331352 | Msa0563890:intron | 40.0% | |
CAAGGATCATCCAATGTGTA+TGG | + | chr4_1:64331346-64331365 | None:intergenic | 40.0% | |
TACACATTGGATGATCCTTG+TGG | - | chr4_1:64331346-64331365 | Msa0563890:intron | 40.0% | |
!! | TTGTGGTTCAAGTAGTGGAT+CGG | - | chr4_1:64331363-64331382 | Msa0563890:intron | 40.0% |
! | AATTTGGTGACTGTGTCACT+TGG | - | chr4_1:64331403-64331422 | Msa0563890:intron | 40.0% |
! | CATACTTGAAGGGCATAAGA+TGG | + | chr4_1:64331446-64331465 | None:intergenic | 40.0% |
GTGTAATTCCAATTAGCCCA+AGG | - | chr4_1:64331515-64331534 | Msa0563890:CDS | 40.0% | |
! | TTTTGTACAGGCCAATTTGC+AGG | - | chr4_1:64331683-64331702 | Msa0563890:intron | 40.0% |
! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:64331795-64331814 | None:intergenic | 40.0% |
! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:64331796-64331815 | None:intergenic | 40.0% |
!! | CTAAAGAAAGACGGACTAAG+AGG | - | chr4_1:64331817-64331836 | Msa0563890:intron | 40.0% |
AGCTACACCTAAAAACGTTG+AGG | - | chr4_1:64331908-64331927 | Msa0563890:intron | 40.0% | |
TCTGTCAAAATCAGGCAAAG+AGG | - | chr4_1:64332015-64332034 | Msa0563890:intron | 40.0% | |
! | ATCTTTCAGGTACGCATTCA+AGG | + | chr4_1:64332136-64332155 | None:intergenic | 40.0% |
TGTTTCACCAGTGAAAAGCT+TGG | - | chr4_1:64332161-64332180 | Msa0563890:intron | 40.0% | |
CTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:64332333-64332352 | Msa0563890:CDS | 40.0% | |
ACGCCGCTAAAGTATGAAAA+AGG | + | chr4_1:64332462-64332481 | None:intergenic | 40.0% | |
TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:64332512-64332531 | Msa0563890:CDS | 40.0% | |
GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:64332513-64332532 | Msa0563890:CDS | 40.0% | |
! | TATGAAAAGGGCATGCCATT+TGG | - | chr4_1:64332525-64332544 | Msa0563890:CDS | 40.0% |
CCTCCAAAGCAAATTCCAAA+TGG | + | chr4_1:64332543-64332562 | None:intergenic | 40.0% | |
! | CCATTTGGAATTTGCTTTGG+AGG | - | chr4_1:64332540-64332559 | Msa0563890:CDS | 40.0% |
AATCCACTAGCCAAGGATGT+TGG | + | chr4_1:64330265-64330284 | None:intergenic | 45.0% | |
GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:64330272-64330291 | None:intergenic | 45.0% | |
!! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:64330273-64330292 | Msa0563890:three_prime_UTR | 45.0% |
! | TGAAAGAGAACCTGCTGCTT+TGG | + | chr4_1:64330473-64330492 | None:intergenic | 45.0% |
AAAGCAGCAGGTTCTCTTTC+AGG | - | chr4_1:64330472-64330491 | Msa0563890:CDS | 45.0% | |
AAGCAGCAGGTTCTCTTTCA+GGG | - | chr4_1:64330473-64330492 | Msa0563890:CDS | 45.0% | |
GTTAGCAGGTTAAGGAAAGC+TGG | - | chr4_1:64330610-64330629 | Msa0563890:CDS | 45.0% | |
TAGCAGGTTAAGGAAAGCTG+GGG | - | chr4_1:64330612-64330631 | Msa0563890:CDS | 45.0% | |
TGGGGCTATCATATTAGGGA+AGG | - | chr4_1:64330630-64330649 | Msa0563890:CDS | 45.0% | |
ACATCAGACTTTCAACCGCT+AGG | + | chr4_1:64330845-64330864 | None:intergenic | 45.0% | |
GGAGTAGCATCCAAATGTAC+AGG | + | chr4_1:64330906-64330925 | None:intergenic | 45.0% | |
GATCCTTGTGGTTCAAGTAG+TGG | - | chr4_1:64331358-64331377 | Msa0563890:intron | 45.0% | |
GATCCACTACTTGAACCACA+AGG | + | chr4_1:64331364-64331383 | None:intergenic | 45.0% | |
! | TCACTTGGTACTGAAACCGA+CGG | - | chr4_1:64331418-64331437 | Msa0563890:intron | 45.0% |
GTAGGCATCAAACCAACAGT+TGG | - | chr4_1:64331475-64331494 | Msa0563890:CDS | 45.0% | |
CTACTAGTGAGACCAACTGT+TGG | + | chr4_1:64331490-64331509 | None:intergenic | 45.0% | |
CAAATTGCGTTCGCAATGCA+TGG | + | chr4_1:64331612-64331631 | None:intergenic | 45.0% | |
TCTGATACGGTCCTGCAAAT+TGG | + | chr4_1:64331697-64331716 | None:intergenic | 45.0% | |
! | TAAAGCGTCTATGCCTGCTA+TGG | + | chr4_1:64331740-64331759 | None:intergenic | 45.0% |
! | ACATCTGCCAAGCTTTTCAC+TGG | + | chr4_1:64332171-64332190 | None:intergenic | 45.0% |
!! | TTTAGCGGCGTACTTGCTAT+TGG | - | chr4_1:64332471-64332490 | Msa0563890:CDS | 45.0% |
!! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:64332483-64332502 | Msa0563890:CDS | 45.0% |
! | ATGCCCTTTTCATATCCTGC+TGG | + | chr4_1:64332519-64332538 | None:intergenic | 45.0% |
CACACGTCTAACTTTCGAAG+CGG | + | chr4_1:64332642-64332661 | None:intergenic | 45.0% | |
!!! | TTTTTATTTTCTTTTTAATT+AGG | + | chr4_1:64331207-64331226 | None:intergenic | 5.0% |
CTTCCAACATCCTTGGCTAG+TGG | - | chr4_1:64330259-64330278 | Msa0563890:three_prime_UTR | 50.0% | |
TCTGCATGTGCTAGTGCATC+TGG | + | chr4_1:64330427-64330446 | None:intergenic | 50.0% | |
GGTTCTCTTTCAGGGTTGCA+TGG | - | chr4_1:64330481-64330500 | Msa0563890:CDS | 50.0% | |
TCAGTAGTGCCAAGAGATGC+AGG | - | chr4_1:64330583-64330602 | Msa0563890:CDS | 50.0% | |
CTAACTACGCCTGCATCTCT+TGG | + | chr4_1:64330595-64330614 | None:intergenic | 50.0% | |
CAGGCGTAGTTAGCAGGTTA+AGG | - | chr4_1:64330602-64330621 | Msa0563890:CDS | 50.0% | |
CTGATGTGACCACTCACTCA+GGG | + | chr4_1:64330659-64330678 | None:intergenic | 50.0% | |
TCTGATGTGACCACTCACTC+AGG | + | chr4_1:64330660-64330679 | None:intergenic | 50.0% | |
TGAGTGAGTGGTCACATCAG+AGG | - | chr4_1:64330659-64330678 | Msa0563890:CDS | 50.0% | |
AGGTCTAGTGAAGCTCCTAG+TGG | - | chr4_1:64330679-64330698 | Msa0563890:intron | 50.0% | |
CTAGTGAAGCTCCTAGTGGT+TGG | - | chr4_1:64330683-64330702 | Msa0563890:intron | 50.0% | |
CCTCTAGCATTCCAACCACT+AGG | + | chr4_1:64330697-64330716 | None:intergenic | 50.0% | |
CCTAGTGGTTGGAATGCTAG+AGG | - | chr4_1:64330694-64330713 | Msa0563890:intron | 50.0% | |
AGTGGTTGGAATGCTAGAGG+TGG | - | chr4_1:64330697-64330716 | Msa0563890:intron | 50.0% | |
TGGAATGCTAGAGGTGGACA+AGG | - | chr4_1:64330703-64330722 | Msa0563890:intron | 50.0% | |
TGCTAGAGGTGGACAAGGAA+AGG | - | chr4_1:64330708-64330727 | Msa0563890:intron | 50.0% | |
GGCCTCGTAAGCTAGCAAAA+AGG | + | chr4_1:64331186-64331205 | None:intergenic | 50.0% | |
GAGTAGGCAGAATGAAGCCA+TGG | + | chr4_1:64331268-64331287 | None:intergenic | 50.0% | |
! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:64331493-64331512 | Msa0563890:CDS | 50.0% |
GTGTCTTGCCTTGGGCTAAT+TGG | + | chr4_1:64331526-64331545 | None:intergenic | 50.0% | |
ACCCAACTGTGTCTTGCCTT+GGG | + | chr4_1:64331534-64331553 | None:intergenic | 50.0% | |
TACCCAACTGTGTCTTGCCT+TGG | + | chr4_1:64331535-64331554 | None:intergenic | 50.0% | |
!!! | CAGGCAAAGAGGTGCTGTTT+TGG | - | chr4_1:64332026-64332045 | Msa0563890:intron | 50.0% |
CAGCTTGCAGCATGAGATCT+TGG | + | chr4_1:64332323-64332342 | None:intergenic | 50.0% | |
TCTAACTTTCGAAGCGGAGG+GGG | + | chr4_1:64332636-64332655 | None:intergenic | 50.0% | |
GTCTAACTTTCGAAGCGGAG+GGG | + | chr4_1:64332637-64332656 | None:intergenic | 50.0% | |
CGTCTAACTTTCGAAGCGGA+GGG | + | chr4_1:64332638-64332657 | None:intergenic | 50.0% | |
ACGTCTAACTTTCGAAGCGG+AGG | + | chr4_1:64332639-64332658 | None:intergenic | 50.0% | |
GAGAGAAGGACCAAAGCAGC+AGG | - | chr4_1:64330460-64330479 | Msa0563890:CDS | 55.0% | |
! | GCAGGCTCTTTTGCACTGCT+TGG | - | chr4_1:64330559-64330578 | Msa0563890:CDS | 55.0% |
GAGATGCAGGCGTAGTTAGC+AGG | - | chr4_1:64330596-64330615 | Msa0563890:CDS | 55.0% | |
ATGTGACCACTCACTCAGGG+TGG | + | chr4_1:64330656-64330675 | None:intergenic | 55.0% | |
AGGGCATAAGATGGAGCCGT+CGG | + | chr4_1:64331437-64331456 | None:intergenic | 55.0% | |
AGCCCAAGGCAAGACACAGT+TGG | - | chr4_1:64331529-64331548 | Msa0563890:CDS | 55.0% | |
GCCCAAGGCAAGACACAGTT+GGG | - | chr4_1:64331530-64331549 | Msa0563890:CDS | 55.0% | |
!! | AGCGGCGTACTTGCTATTGG+AGG | - | chr4_1:64332474-64332493 | Msa0563890:CDS | 55.0% |
CCTGCTGGAACAATGACTCC+AGG | + | chr4_1:64332504-64332523 | None:intergenic | 55.0% | |
CCTGGAGTCATTGTTCCAGC+AGG | - | chr4_1:64332501-64332520 | Msa0563890:CDS | 55.0% | |
GGAAGGCCACCCTGAGTGAG+TGG | - | chr4_1:64330647-64330666 | Msa0563890:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 64330179 | 64332810 | 64330179 | ID=Msa0563890;Name=Msa0563890 |
chr4_1 | mRNA | 64330179 | 64332810 | 64330179 | ID=Msa0563890-mRNA-1;Parent=Msa0563890;Name=Msa0563890-mRNA-1;_AED=0.40;_eAED=0.40;_QI=5|1|1|1|1|1|5|148|515 |
chr4_1 | exon | 64330179 | 64330686 | 64330179 | ID=Msa0563890-mRNA-1:exon:20585;Parent=Msa0563890-mRNA-1 |
chr4_1 | exon | 64330768 | 64330960 | 64330768 | ID=Msa0563890-mRNA-1:exon:20584;Parent=Msa0563890-mRNA-1 |
chr4_1 | exon | 64331060 | 64331296 | 64331060 | ID=Msa0563890-mRNA-1:exon:20583;Parent=Msa0563890-mRNA-1 |
chr4_1 | exon | 64331438 | 64331649 | 64331438 | ID=Msa0563890-mRNA-1:exon:20582;Parent=Msa0563890-mRNA-1 |
chr4_1 | exon | 64332260 | 64332810 | 64332260 | ID=Msa0563890-mRNA-1:exon:20581;Parent=Msa0563890-mRNA-1 |
chr4_1 | five_prime_UTR | 64332806 | 64332810 | 64332806 | ID=Msa0563890-mRNA-1:five_prime_utr;Parent=Msa0563890-mRNA-1 |
chr4_1 | CDS | 64332260 | 64332805 | 64332260 | ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1 |
chr4_1 | CDS | 64331438 | 64331649 | 64331438 | ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1 |
chr4_1 | CDS | 64331060 | 64331296 | 64331060 | ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1 |
chr4_1 | CDS | 64330768 | 64330960 | 64330768 | ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1 |
chr4_1 | CDS | 64330327 | 64330686 | 64330327 | ID=Msa0563890-mRNA-1:cds;Parent=Msa0563890-mRNA-1 |
chr4_1 | three_prime_UTR | 64330179 | 64330326 | 64330179 | ID=Msa0563890-mRNA-1:three_prime_utr;Parent=Msa0563890-mRNA-1 |
Gene Sequence |
Protein sequence |