AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306800 MtrunA17_Chr8g0377691 88.155 515 61 0 1 515 1 515 0.0 921
Msa1306800 MtrunA17_Chr8g0377651 85.880 517 67 2 1 515 3 515 0.0 909
Msa1306800 MtrunA17_Chr8g0377701 87.160 514 65 1 1 513 1 514 0.0 908
Msa1306800 MtrunA17_Chr8g0377641 85.853 516 69 2 1 515 1 513 0.0 903
Msa1306800 MtrunA17_Chr8g0377681 83.757 511 82 1 6 515 3 513 0.0 877
Msa1306800 MtrunA17_Chr4g0037521 58.847 503 196 8 13 508 9 507 0.0 561
Msa1306800 MtrunA17_Chr4g0037491 57.566 304 117 7 205 499 1 301 7.51e-114 339
Msa1306800 MtrunA17_Chr8g0377661 89.744 78 8 0 438 515 1 78 3.06e-42 145
Msa1306800 MtrunA17_Chr4g0037501 64.894 94 31 2 105 196 2 95 5.46e-30 112
Msa1306800 MtrunA17_Chr8g0385461 32.129 249 154 6 40 287 162 396 6.89e-30 123
Msa1306800 MtrunA17_Chr3g0097801 33.086 269 171 5 44 309 46 308 4.85e-27 114
Msa1306800 MtrunA17_Chr2g0279961 29.617 287 189 6 32 313 121 399 4.90e-23 102
Msa1306800 MtrunA17_Chr3g0130801 25.455 495 320 20 40 515 200 664 3.07e-19 91.3
Msa1306800 MtrunA17_Chr1g0191741 38.655 119 67 2 140 257 63 176 2.36e-14 75.1
Msa1306800 MtrunA17_Chr8g0384851 28.516 256 166 6 26 271 117 365 1.29e-12 70.5
Msa1306800 MtrunA17_Chr4g0050371 34.507 142 87 2 138 278 107 243 8.37e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306800 AT4G34880.2 61.089 496 179 5 18 508 22 508 0.0 568
Msa1306800 AT4G34880.1 53.737 495 171 5 18 508 22 462 1.73e-175 502
Msa1306800 AT5G07360.1 32.510 243 153 5 40 281 204 436 2.43e-28 119
Msa1306800 AT5G07360.3 32.510 243 153 5 40 281 204 436 2.43e-28 119
Msa1306800 AT3G25660.1 26.559 497 285 16 52 500 57 521 6.33e-26 111
Msa1306800 AT5G07360.2 32.099 243 147 6 40 281 204 429 3.67e-25 110
Msa1306800 AT5G64440.1 23.611 504 324 15 35 508 125 597 3.85e-20 94.4
Msa1306800 AT1G08980.1 41.176 119 64 2 140 257 64 177 2.46e-15 78.6
Msa1306800 AT5G09420.1 38.462 117 66 2 138 253 105 216 2.42e-11 66.6

Find 121 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATACTCACCAATTT+TGG 0.124167 8_4:-1757337 None:intergenic
GTGAGACTGTACTACAATTT+TGG 0.196580 8_4:+1756980 Msa1306800:CDS
GTTGCATGGAATACCTATTT+TGG 0.222876 8_4:+1755614 Msa1306800:CDS
AAAGTTGGGGCTATCATATT+AGG 0.223239 8_4:+1755744 Msa1306800:CDS
GTGAAACAACTAAATCTTTC+AGG 0.228755 8_4:-1757270 None:intergenic
AAAGCAGCAGGTTCTCTTTC+AGG 0.230296 8_4:+1755591 Msa1306800:CDS
AATTTCAGTAGCAGCAAATT+TGG 0.264283 8_4:+1756511 Msa1306800:CDS
CAGGCAAAGAGGTGCTGTTT+TGG 0.279043 8_4:+1757150 Msa1306800:intron
ATGACAAGATGGTCACAAAA+TGG 0.286173 8_4:+1757519 Msa1306800:CDS
GTGTCTTGCCTTGGGCTAAT+TGG 0.286345 8_4:-1756647 None:intergenic
TTGATGTTAACTGCTTTCTT+TGG 0.290637 8_4:-1755446 None:intergenic
TGTAACTAACAGAAGTATTA+TGG 0.292613 8_4:-1755343 None:intergenic
AATTGAGCATAGCCACCTTT+TGG 0.307622 8_4:-1756917 None:intergenic
CAACAAGAAACACCCAAAAT+TGG 0.311801 8_4:+1757324 Msa1306800:CDS
ATGTTATCCTTAACCAAAAT+AGG 0.317243 8_4:-1755627 None:intergenic
CAGCTTGCAGCATGAGATCT+TGG 0.321727 8_4:-1757449 None:intergenic
ATCTTAATTGTAGGAGAAAA+TGG 0.323871 8_4:+1757419 Msa1306800:intron
TCCGATACGGTCCTGCAAAT+TGG 0.338092 8_4:-1756818 None:intergenic
CCATTTGGAATTTGCTTTGG+AGG 0.345917 8_4:+1757669 Msa1306800:CDS
AAGGATGTTGGAAGCATAGA+AGG 0.345981 8_4:-1755369 None:intergenic
TACCCAACTGTGTCTTGCCT+TGG 0.349156 8_4:-1756656 None:intergenic
GCTGAAAAGACAAATGGAAT+TGG 0.352248 8_4:+1757468 Msa1306800:CDS
ACGCCGCTAAAGTATGAAAA+AGG 0.370786 8_4:-1757588 None:intergenic
ACCCAACTGTGTCTTGCCTT+GGG 0.375767 8_4:-1756655 None:intergenic
TGAAAGAGAACCTGCTGCTT+TGG 0.377922 8_4:-1755589 None:intergenic
ATGCCATTTGGAATTTGCTT+TGG 0.378888 8_4:+1757666 Msa1306800:CDS
ATCTTTCAGGTATGCGTTCA+AGG 0.379389 8_4:-1757257 None:intergenic
TTTAGCGGCGTACTTGCTAT+TGG 0.387009 8_4:+1757600 Msa1306800:CDS
TCTAAGACTCCTTTGAGAAC+TGG 0.389957 8_4:-1755513 None:intergenic
TATGAAAAGGGCATGCCATT+TGG 0.394570 8_4:+1757654 Msa1306800:CDS
TCAGCATGTGCTAATGCATC+TGG 0.402283 8_4:-1755543 None:intergenic
CTTGCTATTGGAGGTTATCC+TGG 0.409552 8_4:+1757612 Msa1306800:CDS
TAAGGATAACATTGCAACTA+AGG 0.417159 8_4:+1755638 Msa1306800:CDS
TTAGCAGGTTAAGGAAAGTT+GGG 0.419376 8_4:+1755730 Msa1306800:CDS
AAGCAGCAGGTTCTCTTTCA+GGG 0.420978 8_4:+1755592 Msa1306800:CDS
TTCTATGCTTCCAACATCCT+TGG 0.422281 8_4:+1755371 Msa1306800:CDS
TTGTAGGAGAAAATGGAGTA+TGG 0.423860 8_4:+1757426 Msa1306800:intron
CTAAGACTCCTTTGAGAACT+GGG 0.435475 8_4:-1755512 None:intergenic
CTGAAAAGACAAATGGAATT+GGG 0.436484 8_4:+1757469 Msa1306800:CDS
GTTAGCAGGTTAAGGAAAGT+TGG 0.441622 8_4:+1755729 Msa1306800:CDS
CTGGCGTAGTTAGCAGGTTA+AGG 0.445156 8_4:+1755721 Msa1306800:CDS
CAAGGATCATCCAATGTGTA+TGG 0.446045 8_4:-1756467 None:intergenic
AAGTTGGGGCTATCATATTA+GGG 0.451734 8_4:+1755745 Msa1306800:CDS
AATTCAGAATACTGCAGTAT+AGG 0.456209 8_4:+1755252 None:intergenic
CTAACTACGCCAGCATCTCT+TGG 0.471908 8_4:-1755711 None:intergenic
GCCCAAGGCAAGACACAGTT+GGG 0.473558 8_4:+1756654 Msa1306800:CDS
ACTACTGAGTTCATACTTGA+AGG 0.474985 8_4:-1756578 None:intergenic
AGTTCTCAAAGGAGTCTTAG+AGG 0.475499 8_4:+1755515 Msa1306800:CDS
TGACAAGATGGTCACAAAAT+GGG 0.477152 8_4:+1757520 Msa1306800:CDS
TCAAGTATGAACTCAGTAGT+AGG 0.480266 8_4:+1756581 Msa1306800:CDS
AGCGGCGTACTTGCTATTGG+AGG 0.487808 8_4:+1757603 Msa1306800:CDS
TGTTCCAGCAGGATATGAAA+AGG 0.490531 8_4:+1757641 Msa1306800:CDS
ATTTGCTTTGGAGGTTTGAA+AGG 0.493826 8_4:+1757678 Msa1306800:CDS
CTGCAAGCTGAAAAGACAAA+TGG 0.495604 8_4:+1757462 Msa1306800:CDS
GAGATGCTGGCGTAGTTAGC+AGG 0.503203 8_4:+1755715 Msa1306800:CDS
TCAGTAGTGCCAAGAGATGC+TGG 0.504508 8_4:+1755702 Msa1306800:CDS
TAAGCAATTTCAATTAACTT+CGG 0.513290 8_4:-1757708 None:intergenic
GGTTCTCTTTCAGGGTTGCA+TGG 0.513466 8_4:+1755600 Msa1306800:CDS
CTAAAGAAAGACGGACTAAG+AGG 0.516133 8_4:+1756941 Msa1306800:CDS
CCTGGAGTCATTGTTCCAGC+AGG 0.517601 8_4:+1757630 Msa1306800:CDS
GCATCAAAGTATATCCCAAA+AGG 0.517964 8_4:+1756902 Msa1306800:CDS
CATACTTGAAGGGCATAAGA+TGG 0.523653 8_4:-1756567 None:intergenic
CTTCCAACATCCTTGGCTAG+TGG 0.524164 8_4:+1755378 Msa1306800:CDS
GCCAATTTGCAGGACCGTAT+CGG 0.524930 8_4:+1756817 Msa1306800:CDS
AATACTGCAGTATAGGTACT+AGG 0.533031 8_4:+1755259 Msa1306800:five_prime_UTR
TCTGATGTGACCACTCACTC+AGG 0.535215 8_4:-1755776 None:intergenic
CCTCCAAAGCAAATTCCAAA+TGG 0.541500 8_4:-1757669 None:intergenic
GAGAGAAGGACCAAAGCAGC+AGG 0.543175 8_4:+1755579 Msa1306800:CDS
CTACTGAGTTCATACTTGAA+GGG 0.545399 8_4:-1756577 None:intergenic
GATCCTTGTGGTTCAAGTAG+TGG 0.552399 8_4:+1756482 Msa1306800:CDS
GATAAGCTAAACACTACTGC+AGG 0.552473 8_4:+1755660 Msa1306800:CDS
TATGTTCTTGAAACCATAGC+AGG 0.553334 8_4:+1756848 Msa1306800:CDS
GGCTAGTGGATTCTCAATCA+AGG 0.555061 8_4:+1755392 Msa1306800:CDS
AGCCCAAGGCAAGACACAGT+TGG 0.555092 8_4:+1756653 Msa1306800:CDS
CTTTATTGAACATGACAAGA+TGG 0.556585 8_4:+1757508 Msa1306800:CDS
CCTGCTGGAACAATGACTCC+AGG 0.556829 8_4:-1757630 None:intergenic
GTTGGTCTCACTAGTAGAGC+AGG 0.557670 8_4:+1756617 Msa1306800:CDS
AATCCACTAGCCAAGGATGT+TGG 0.560632 8_4:-1755381 None:intergenic
CTAGTGAAGCTCCTAGTGGT+TGG 0.561059 8_4:+1755802 Msa1306800:CDS
TCTAACTTTCGAAGCGGAGG+GGG 0.561714 8_4:-1757762 None:intergenic
GTTCCAGCAGGATATGAAAA+GGG 0.561856 8_4:+1757642 Msa1306800:CDS
CTAGTGGTTGGAATGCTAGA+GGG 0.566778 8_4:+1755814 Msa1306800:CDS
TTTGTCAAAATCAGGCAAAG+AGG 0.571847 8_4:+1757139 Msa1306800:intron
TAAAGCGTCTATGCCTGCTA+TGG 0.572957 8_4:-1756861 None:intergenic
CTTCTAACTTTCGAAGCGGA+GGG 0.575136 8_4:-1757764 None:intergenic
GTTTCAACTTTCAAGACACA+TGG 0.578997 8_4:+1755284 Msa1306800:exon
TGTTTCACCAGTGAAAAGCT+TGG 0.582494 8_4:+1757285 Msa1306800:CDS
GCTCAATTTCTAAAGAAAGA+CGG 0.585283 8_4:+1756932 Msa1306800:CDS
AAGAAATAAACTTGATGCTG+TGG 0.585547 8_4:+1757560 Msa1306800:CDS
AACATAAGCAGCATCCGATA+CGG 0.585738 8_4:-1756831 None:intergenic
CCTAGTGGTTGGAATGCTAG+AGG 0.590749 8_4:+1755813 Msa1306800:CDS
ACTTCTAACTTTCGAAGCGG+AGG 0.591701 8_4:-1757765 None:intergenic
TTCTAACTTTCGAAGCGGAG+GGG 0.592564 8_4:-1757763 None:intergenic
TAGTGGTTGGAATGCTAGAG+GGG 0.595776 8_4:+1755815 Msa1306800:CDS
GATTGAGAATCCACTAGCCA+AGG 0.599130 8_4:-1755388 None:intergenic
CTGATGTGACCACTCACTCA+GGG 0.604738 8_4:-1755775 None:intergenic
TTGTGGTTCAAGTAGTGGAT+CGG 0.605165 8_4:+1756487 Msa1306800:CDS
AATTTGGTGACTGTGTCGCT+TGG 0.605301 8_4:+1756527 Msa1306800:CDS
ATACAAAACCCAGTTCTCAA+AGG 0.608040 8_4:+1755504 Msa1306800:CDS
CACACTTCTAACTTTCGAAG+CGG 0.611010 8_4:-1757768 None:intergenic
CCTCTAGCATTCCAACCACT+AGG 0.611184 8_4:-1755813 None:intergenic
GGAAGGCCACCCTGAGTGAG+TGG 0.620599 8_4:+1755766 Msa1306800:CDS
ATAGAGCTGATCAAGAGAGA+AGG 0.622629 8_4:+1755565 Msa1306800:CDS
AACATTGATCAAATTATCAG+TGG 0.625881 8_4:+1757193 Msa1306800:CDS
TAGCAGGTTAAGGAAAGTTG+GGG 0.626810 8_4:+1755731 Msa1306800:CDS
TGGGGCTATCATATTAGGGA+AGG 0.629817 8_4:+1755749 Msa1306800:CDS
TCAAAGTATATCCCAAAAGG+TGG 0.630247 8_4:+1756905 Msa1306800:CDS
CTACTAGTGAGACCAACTGT+TGG 0.631026 8_4:-1756611 None:intergenic
CTAACAGAAGTATTATGGAA+AGG 0.639092 8_4:-1755338 None:intergenic
AGGGCATAAGATGGAGCCGT+CGG 0.639961 8_4:-1756558 None:intergenic
TGAGTGAGTGGTCACATCAG+AGG 0.640749 8_4:+1755778 Msa1306800:CDS
AGGATGTTGGAAGCATAGAA+GGG 0.642867 8_4:-1755368 None:intergenic
GTAGGCATCAAACCAACAGT+TGG 0.645953 8_4:+1756599 Msa1306800:CDS
GTGTAATTCCAATTAGCCCA+AGG 0.647537 8_4:+1756639 Msa1306800:CDS
TACACATTGGATGATCCTTG+TGG 0.659008 8_4:+1756470 Msa1306800:CDS
AGGTCTAGTGAAGCTCCTAG+TGG 0.675570 8_4:+1755798 Msa1306800:CDS
ATGTGACCACTCACTCAGGG+TGG 0.680087 8_4:-1755772 None:intergenic
AGTGGTTGGAATGCTAGAGG+GGG 0.698357 8_4:+1755816 Msa1306800:CDS
TGTGCAGAATCCATACACAT+TGG 0.705508 8_4:+1756457 Msa1306800:intron
TCGCTTGGTACTGAAACCGA+CGG 0.731304 8_4:+1756542 Msa1306800:CDS
GATCCACTACTTGAACCACA+AGG 0.767744 8_4:-1756485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATATATAAGCAAAA+AGG - chr8_4:1756187-1756206 None:intergenic 10.0%
!!! TTTGTATTTTGATTTGTTTC+AGG - chr8_4:1755491-1755510 None:intergenic 20.0%
!!! TATATATACTCACCAATTTT+GGG - chr8_4:1757339-1757358 None:intergenic 20.0%
!!! ATATATATACTCACCAATTT+TGG - chr8_4:1757340-1757359 None:intergenic 20.0%
!! GCATAAGAAAATAAACAAAA+GGG - chr8_4:1757372-1757391 None:intergenic 20.0%
!! TGCATAAGAAAATAAACAAA+AGG - chr8_4:1757373-1757392 None:intergenic 20.0%
!!! ATATGAATTAGTATTGATCA+AGG + chr8_4:1757392-1757411 Msa1306800:intron 20.0%
!! TAAGCAATTTCAATTAACTT+CGG - chr8_4:1757711-1757730 None:intergenic 20.0%
!!! TGTAACTAACAGAAGTATTA+TGG - chr8_4:1755346-1755365 None:intergenic 25.0%
! ATGTTATCCTTAACCAAAAT+AGG - chr8_4:1755630-1755649 None:intergenic 25.0%
! CTTATACTTACAATTGAGTA+TGG - chr8_4:1756050-1756069 None:intergenic 25.0%
! TACACACAAACTAAAAATAG+TGG + chr8_4:1756078-1756097 Msa1306800:intron 25.0%
!!! TTATTTTTTGACTTGCAATC+AGG - chr8_4:1756234-1756253 None:intergenic 25.0%
! AACTCATTTGATATTTCTCT+CGG - chr8_4:1756360-1756379 None:intergenic 25.0%
! AAATGAGTTCATTAAAACCA+TGG + chr8_4:1756371-1756390 Msa1306800:intron 25.0%
! ATGAATGATTCTTGAAAATG+AGG + chr8_4:1756411-1756430 Msa1306800:intron 25.0%
! AGTCTATATATATGGCAAAT+TGG + chr8_4:1756679-1756698 Msa1306800:intron 25.0%
!! TAGATAAATGTCTTTTGACA+GGG - chr8_4:1756759-1756778 None:intergenic 25.0%
!! ATAGATAAATGTCTTTTGAC+AGG - chr8_4:1756760-1756779 None:intergenic 25.0%
!! TTAGTTACCTTAACGTTTTT+AGG - chr8_4:1757042-1757061 None:intergenic 25.0%
! AAACTAGTATTTGTCAAGTA+CGG + chr8_4:1757068-1757087 Msa1306800:intron 25.0%
!! CATATTCTTTTGTCAAAATC+AGG + chr8_4:1757131-1757150 Msa1306800:intron 25.0%
! AACATTGATCAAATTATCAG+TGG + chr8_4:1757193-1757212 Msa1306800:CDS 25.0%
! ATCTTAATTGTAGGAGAAAA+TGG + chr8_4:1757419-1757438 Msa1306800:intron 25.0%
!! CTAACAGAAGTATTATGGAA+AGG - chr8_4:1755341-1755360 None:intergenic 30.0%
TTGATGTTAACTGCTTTCTT+TGG - chr8_4:1755449-1755468 None:intergenic 30.0%
!!! TGGAATACCTATTTTGGTTA+AGG + chr8_4:1755620-1755639 Msa1306800:CDS 30.0%
TAAGGATAACATTGCAACTA+AGG + chr8_4:1755638-1755657 Msa1306800:CDS 30.0%
TTTACGTATTCCTGTACATT+TGG + chr8_4:1756012-1756031 Msa1306800:intron 30.0%
TACTTACAATTGAGTATGGA+GGG - chr8_4:1756046-1756065 None:intergenic 30.0%
ATACTTACAATTGAGTATGG+AGG - chr8_4:1756047-1756066 None:intergenic 30.0%
CCAAAATACAAGCAAAACTT+AGG - chr8_4:1756147-1756166 None:intergenic 30.0%
! CCTAAGTTTTGCTTGTATTT+TGG + chr8_4:1756144-1756163 Msa1306800:intron 30.0%
AAAAAGGTAGTCATATTTGG+TGG - chr8_4:1756171-1756190 None:intergenic 30.0%
AGCAAAAAGGTAGTCATATT+TGG - chr8_4:1756174-1756193 None:intergenic 30.0%
AACATTTACTGAATCATAGC+TGG + chr8_4:1756252-1756271 Msa1306800:intron 30.0%
TTCAAGAATCATTCATGAGT+AGG - chr8_4:1756407-1756426 None:intergenic 30.0%
AATGATTCTTGAAAATGAGG+AGG + chr8_4:1756414-1756433 Msa1306800:intron 30.0%
AATTTCAGTAGCAGCAAATT+TGG + chr8_4:1756511-1756530 Msa1306800:CDS 30.0%
GTTGGGTAAGTCTATATATA+TGG + chr8_4:1756671-1756690 Msa1306800:intron 30.0%
TGTTGATATAAAGCAATCGT+AGG - chr8_4:1756710-1756729 None:intergenic 30.0%
! GCTCAATTTCTAAAGAAAGA+CGG + chr8_4:1756932-1756951 Msa1306800:CDS 30.0%
GTGAAACAACTAAATCTTTC+AGG - chr8_4:1757273-1757292 None:intergenic 30.0%
CTGAAAAGACAAATGGAATT+GGG + chr8_4:1757469-1757488 Msa1306800:CDS 30.0%
CTTTATTGAACATGACAAGA+TGG + chr8_4:1757508-1757527 Msa1306800:CDS 30.0%
AAGAAATAAACTTGATGCTG+TGG + chr8_4:1757560-1757579 Msa1306800:CDS 30.0%
!! ACACCTTTTTCATACTTTAG+CGG + chr8_4:1757585-1757604 Msa1306800:CDS 30.0%
AATACTGCAGTATAGGTACT+AGG + chr8_4:1755259-1755278 Msa1306800:five_prime_UTR 35.0%
GTTTCAACTTTCAAGACACA+TGG + chr8_4:1755284-1755303 Msa1306800:exon 35.0%
ATACAAAACCCAGTTCTCAA+AGG + chr8_4:1755504-1755523 Msa1306800:CDS 35.0%
! GTTGCATGGAATACCTATTT+TGG + chr8_4:1755614-1755633 Msa1306800:CDS 35.0%
TTAGCAGGTTAAGGAAAGTT+GGG + chr8_4:1755730-1755749 Msa1306800:CDS 35.0%
AAAGTTGGGGCTATCATATT+AGG + chr8_4:1755744-1755763 Msa1306800:CDS 35.0%
AAGTTGGGGCTATCATATTA+GGG + chr8_4:1755745-1755764 Msa1306800:CDS 35.0%
CTTCTTACTTAATGTGAGCT+TGG + chr8_4:1755863-1755882 Msa1306800:intron 35.0%
CTTATCATGTATTTGCCTAG+CGG + chr8_4:1755946-1755965 Msa1306800:intron 35.0%
!!! AATCATAGCTGGCCTTTTTA+TGG + chr8_4:1756263-1756282 Msa1306800:intron 35.0%
TCATTTGATATTTCTCTCGG+TGG - chr8_4:1756357-1756376 None:intergenic 35.0%
CTACTGAGTTCATACTTGAA+GGG - chr8_4:1756580-1756599 None:intergenic 35.0%
ACTACTGAGTTCATACTTGA+AGG - chr8_4:1756581-1756600 None:intergenic 35.0%
TCAAGTATGAACTCAGTAGT+AGG + chr8_4:1756581-1756600 Msa1306800:CDS 35.0%
AATGTGCAACATTGTTTGTG+TGG + chr8_4:1756784-1756803 Msa1306800:intron 35.0%
!!! TTGTTTGTGTGGTTTTGTAC+AGG + chr8_4:1756795-1756814 Msa1306800:intron 35.0%
TATGTTCTTGAAACCATAGC+AGG + chr8_4:1756848-1756867 Msa1306800:CDS 35.0%
GCATCAAAGTATATCCCAAA+AGG + chr8_4:1756902-1756921 Msa1306800:CDS 35.0%
TCAAAGTATATCCCAAAAGG+TGG + chr8_4:1756905-1756924 Msa1306800:CDS 35.0%
GGACTAAGAGGAAAAAGATT+AGG + chr8_4:1756953-1756972 Msa1306800:CDS 35.0%
! GTGAGACTGTACTACAATTT+TGG + chr8_4:1756980-1756999 Msa1306800:CDS 35.0%
AGCTACACCTAAAAACGTTA+AGG + chr8_4:1757032-1757051 Msa1306800:CDS 35.0%
! GTCAAGTACGGATACTTTTA+AGG + chr8_4:1757080-1757099 Msa1306800:intron 35.0%
TTTGTCAAAATCAGGCAAAG+AGG + chr8_4:1757139-1757158 Msa1306800:intron 35.0%
CAACAAGAAACACCCAAAAT+TGG + chr8_4:1757324-1757343 Msa1306800:CDS 35.0%
CAAGGTAGCATCTTAATTGT+AGG + chr8_4:1757410-1757429 Msa1306800:intron 35.0%
TTGTAGGAGAAAATGGAGTA+TGG + chr8_4:1757426-1757445 Msa1306800:intron 35.0%
GCTGAAAAGACAAATGGAAT+TGG + chr8_4:1757468-1757487 Msa1306800:CDS 35.0%
ATGACAAGATGGTCACAAAA+TGG + chr8_4:1757519-1757538 Msa1306800:CDS 35.0%
TGACAAGATGGTCACAAAAT+GGG + chr8_4:1757520-1757539 Msa1306800:CDS 35.0%
! ATGCCATTTGGAATTTGCTT+TGG + chr8_4:1757666-1757685 Msa1306800:CDS 35.0%
!! ATTTGCTTTGGAGGTTTGAA+AGG + chr8_4:1757678-1757697 Msa1306800:CDS 35.0%
! AGGATGTTGGAAGCATAGAA+GGG - chr8_4:1755371-1755390 None:intergenic 40.0%
! AAGGATGTTGGAAGCATAGA+AGG - chr8_4:1755372-1755391 None:intergenic 40.0%
TTCTATGCTTCCAACATCCT+TGG + chr8_4:1755371-1755390 Msa1306800:CDS 40.0%
! CTAAGACTCCTTTGAGAACT+GGG - chr8_4:1755515-1755534 None:intergenic 40.0%
! TCTAAGACTCCTTTGAGAAC+TGG - chr8_4:1755516-1755535 None:intergenic 40.0%
AGTTCTCAAAGGAGTCTTAG+AGG + chr8_4:1755515-1755534 Msa1306800:CDS 40.0%
ATAGAGCTGATCAAGAGAGA+AGG + chr8_4:1755565-1755584 Msa1306800:CDS 40.0%
GATAAGCTAAACACTACTGC+AGG + chr8_4:1755660-1755679 Msa1306800:CDS 40.0%
GTTAGCAGGTTAAGGAAAGT+TGG + chr8_4:1755729-1755748 Msa1306800:CDS 40.0%
TAGCAGGTTAAGGAAAGTTG+GGG + chr8_4:1755731-1755750 Msa1306800:CDS 40.0%
ACGGCTCTCTAACCATAAAA+AGG - chr8_4:1756278-1756297 None:intergenic 40.0%
! TTTTATGGTTAGAGAGCCGT+AGG + chr8_4:1756278-1756297 Msa1306800:intron 40.0%
TAGCAAAAAGGCTCAACCTA+CGG - chr8_4:1756297-1756316 None:intergenic 40.0%
TGTGCAGAATCCATACACAT+TGG + chr8_4:1756457-1756476 Msa1306800:intron 40.0%
CAAGGATCATCCAATGTGTA+TGG - chr8_4:1756470-1756489 None:intergenic 40.0%
TACACATTGGATGATCCTTG+TGG + chr8_4:1756470-1756489 Msa1306800:CDS 40.0%
!! TTGTGGTTCAAGTAGTGGAT+CGG + chr8_4:1756487-1756506 Msa1306800:CDS 40.0%
! CATACTTGAAGGGCATAAGA+TGG - chr8_4:1756570-1756589 None:intergenic 40.0%
GTGTAATTCCAATTAGCCCA+AGG + chr8_4:1756639-1756658 Msa1306800:CDS 40.0%
AAATTGCGTTCGCAATGCAT+GGG - chr8_4:1756735-1756754 None:intergenic 40.0%
AAAATTGCGTTCGCAATGCA+TGG - chr8_4:1756736-1756755 None:intergenic 40.0%
! TTTTGTACAGGCCAATTTGC+AGG + chr8_4:1756807-1756826 Msa1306800:intron 40.0%
AACATAAGCAGCATCCGATA+CGG - chr8_4:1756834-1756853 None:intergenic 40.0%
! ATTGAGCATAGCCACCTTTT+GGG - chr8_4:1756919-1756938 None:intergenic 40.0%
! AATTGAGCATAGCCACCTTT+TGG - chr8_4:1756920-1756939 None:intergenic 40.0%
!! CTAAAGAAAGACGGACTAAG+AGG + chr8_4:1756941-1756960 Msa1306800:CDS 40.0%
! ATCTTTCAGGTATGCGTTCA+AGG - chr8_4:1757260-1757279 None:intergenic 40.0%
TGTTTCACCAGTGAAAAGCT+TGG + chr8_4:1757285-1757304 Msa1306800:CDS 40.0%
CTGCAAGCTGAAAAGACAAA+TGG + chr8_4:1757462-1757481 Msa1306800:CDS 40.0%
ACGCCGCTAAAGTATGAAAA+AGG - chr8_4:1757591-1757610 None:intergenic 40.0%
TGTTCCAGCAGGATATGAAA+AGG + chr8_4:1757641-1757660 Msa1306800:CDS 40.0%
GTTCCAGCAGGATATGAAAA+GGG + chr8_4:1757642-1757661 Msa1306800:CDS 40.0%
! TATGAAAAGGGCATGCCATT+TGG + chr8_4:1757654-1757673 Msa1306800:CDS 40.0%
CCTCCAAAGCAAATTCCAAA+TGG - chr8_4:1757672-1757691 None:intergenic 40.0%
! CCATTTGGAATTTGCTTTGG+AGG + chr8_4:1757669-1757688 Msa1306800:CDS 40.0%
CACACTTCTAACTTTCGAAG+CGG - chr8_4:1757771-1757790 None:intergenic 40.0%
AATCCACTAGCCAAGGATGT+TGG - chr8_4:1755384-1755403 None:intergenic 45.0%
GATTGAGAATCCACTAGCCA+AGG - chr8_4:1755391-1755410 None:intergenic 45.0%
!! GGCTAGTGGATTCTCAATCA+AGG + chr8_4:1755392-1755411 Msa1306800:CDS 45.0%
TCAGCATGTGCTAATGCATC+TGG - chr8_4:1755546-1755565 None:intergenic 45.0%
! TGAAAGAGAACCTGCTGCTT+TGG - chr8_4:1755592-1755611 None:intergenic 45.0%
AAAGCAGCAGGTTCTCTTTC+AGG + chr8_4:1755591-1755610 Msa1306800:CDS 45.0%
AAGCAGCAGGTTCTCTTTCA+GGG + chr8_4:1755592-1755611 Msa1306800:CDS 45.0%
TGGGGCTATCATATTAGGGA+AGG + chr8_4:1755749-1755768 Msa1306800:CDS 45.0%
CTAGTGGTTGGAATGCTAGA+GGG + chr8_4:1755814-1755833 Msa1306800:CDS 45.0%
TAGTGGTTGGAATGCTAGAG+GGG + chr8_4:1755815-1755834 Msa1306800:CDS 45.0%
ACATCAGACTTTCAACCGCT+AGG - chr8_4:1755964-1755983 None:intergenic 45.0%
GGAGTAGCATCCAAATGTAC+AGG - chr8_4:1756025-1756044 None:intergenic 45.0%
!! AGCCTTTTTGCTAGCTTACG+AGG + chr8_4:1756304-1756323 Msa1306800:intron 45.0%
GATCCTTGTGGTTCAAGTAG+TGG + chr8_4:1756482-1756501 Msa1306800:CDS 45.0%
GATCCACTACTTGAACCACA+AGG - chr8_4:1756488-1756507 None:intergenic 45.0%
! AATTTGGTGACTGTGTCGCT+TGG + chr8_4:1756527-1756546 Msa1306800:CDS 45.0%
GTAGGCATCAAACCAACAGT+TGG + chr8_4:1756599-1756618 Msa1306800:CDS 45.0%
CTACTAGTGAGACCAACTGT+TGG - chr8_4:1756614-1756633 None:intergenic 45.0%
! TAAAGCGTCTATGCCTGCTA+TGG - chr8_4:1756864-1756883 None:intergenic 45.0%
! ACATCTGCCAAGCTTTTCAC+TGG - chr8_4:1757295-1757314 None:intergenic 45.0%
!! TTTAGCGGCGTACTTGCTAT+TGG + chr8_4:1757600-1757619 Msa1306800:CDS 45.0%
!! CTTGCTATTGGAGGTTATCC+TGG + chr8_4:1757612-1757631 Msa1306800:CDS 45.0%
! ATGCCCTTTTCATATCCTGC+TGG - chr8_4:1757648-1757667 None:intergenic 45.0%
TTCTAACTTTCGAAGCGGAG+GGG - chr8_4:1757766-1757785 None:intergenic 45.0%
CTTCTAACTTTCGAAGCGGA+GGG - chr8_4:1757767-1757786 None:intergenic 45.0%
ACTTCTAACTTTCGAAGCGG+AGG - chr8_4:1757768-1757787 None:intergenic 45.0%
!!! TTTTTATTTTCTTTTTAATT+AGG - chr8_4:1756330-1756349 None:intergenic 5.0%
CTTCCAACATCCTTGGCTAG+TGG + chr8_4:1755378-1755397 Msa1306800:CDS 50.0%
GGTTCTCTTTCAGGGTTGCA+TGG + chr8_4:1755600-1755619 Msa1306800:CDS 50.0%
TCAGTAGTGCCAAGAGATGC+TGG + chr8_4:1755702-1755721 Msa1306800:CDS 50.0%
CTAACTACGCCAGCATCTCT+TGG - chr8_4:1755714-1755733 None:intergenic 50.0%
CTGGCGTAGTTAGCAGGTTA+AGG + chr8_4:1755721-1755740 Msa1306800:CDS 50.0%
CTGATGTGACCACTCACTCA+GGG - chr8_4:1755778-1755797 None:intergenic 50.0%
TCTGATGTGACCACTCACTC+AGG - chr8_4:1755779-1755798 None:intergenic 50.0%
TGAGTGAGTGGTCACATCAG+AGG + chr8_4:1755778-1755797 Msa1306800:CDS 50.0%
AGGTCTAGTGAAGCTCCTAG+TGG + chr8_4:1755798-1755817 Msa1306800:CDS 50.0%
CTAGTGAAGCTCCTAGTGGT+TGG + chr8_4:1755802-1755821 Msa1306800:CDS 50.0%
CCTCTAGCATTCCAACCACT+AGG - chr8_4:1755816-1755835 None:intergenic 50.0%
CCTAGTGGTTGGAATGCTAG+AGG + chr8_4:1755813-1755832 Msa1306800:CDS 50.0%
AGTGGTTGGAATGCTAGAGG+GGG + chr8_4:1755816-1755835 Msa1306800:CDS 50.0%
GGCCTCGTAAGCTAGCAAAA+AGG - chr8_4:1756309-1756328 None:intergenic 50.0%
GAGTAGGCAGAATGAAGCCA+TGG - chr8_4:1756391-1756410 None:intergenic 50.0%
! TCGCTTGGTACTGAAACCGA+CGG + chr8_4:1756542-1756561 Msa1306800:CDS 50.0%
! GTTGGTCTCACTAGTAGAGC+AGG + chr8_4:1756617-1756636 Msa1306800:CDS 50.0%
GTGTCTTGCCTTGGGCTAAT+TGG - chr8_4:1756650-1756669 None:intergenic 50.0%
ACCCAACTGTGTCTTGCCTT+GGG - chr8_4:1756658-1756677 None:intergenic 50.0%
TACCCAACTGTGTCTTGCCT+TGG - chr8_4:1756659-1756678 None:intergenic 50.0%
GCCAATTTGCAGGACCGTAT+CGG + chr8_4:1756817-1756836 Msa1306800:CDS 50.0%
TCCGATACGGTCCTGCAAAT+TGG - chr8_4:1756821-1756840 None:intergenic 50.0%
!!! CAGGCAAAGAGGTGCTGTTT+TGG + chr8_4:1757150-1757169 Msa1306800:intron 50.0%
CAGCTTGCAGCATGAGATCT+TGG - chr8_4:1757452-1757471 None:intergenic 50.0%
TCTAACTTTCGAAGCGGAGG+GGG - chr8_4:1757765-1757784 None:intergenic 50.0%
GAGAGAAGGACCAAAGCAGC+AGG + chr8_4:1755579-1755598 Msa1306800:CDS 55.0%
! GCAGGCTCTTTTGCACTGCT+TGG + chr8_4:1755678-1755697 Msa1306800:CDS 55.0%
GAGATGCTGGCGTAGTTAGC+AGG + chr8_4:1755715-1755734 Msa1306800:CDS 55.0%
ATGTGACCACTCACTCAGGG+TGG - chr8_4:1755775-1755794 None:intergenic 55.0%
TGGAATGCTAGAGGGGGACA+AGG + chr8_4:1755822-1755841 Msa1306800:CDS 55.0%
TGCTAGAGGGGGACAAGGAA+AGG + chr8_4:1755827-1755846 Msa1306800:CDS 55.0%
AGGGCATAAGATGGAGCCGT+CGG - chr8_4:1756561-1756580 None:intergenic 55.0%
AGCCCAAGGCAAGACACAGT+TGG + chr8_4:1756653-1756672 Msa1306800:CDS 55.0%
GCCCAAGGCAAGACACAGTT+GGG + chr8_4:1756654-1756673 Msa1306800:CDS 55.0%
!! AGCGGCGTACTTGCTATTGG+AGG + chr8_4:1757603-1757622 Msa1306800:CDS 55.0%
CCTGCTGGAACAATGACTCC+AGG - chr8_4:1757633-1757652 None:intergenic 55.0%
CCTGGAGTCATTGTTCCAGC+AGG + chr8_4:1757630-1757649 Msa1306800:CDS 55.0%
GGAAGGCCACCCTGAGTGAG+TGG + chr8_4:1755766-1755785 Msa1306800:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1755258 1757791 1755258 ID=Msa1306800;Name=Msa1306800
chr8_4 mRNA 1755258 1757791 1755258 ID=Msa1306800-mRNA-1;Parent=Msa1306800;Name=Msa1306800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=45|1|1|1|1|1|5|0|515
chr8_4 exon 1755258 1755848 1755258 ID=Msa1306800-mRNA-1:exon:536;Parent=Msa1306800-mRNA-1
chr8_4 exon 1756464 1756675 1756464 ID=Msa1306800-mRNA-1:exon:537;Parent=Msa1306800-mRNA-1
chr8_4 exon 1756817 1757053 1756817 ID=Msa1306800-mRNA-1:exon:538;Parent=Msa1306800-mRNA-1
chr8_4 exon 1757153 1757345 1757153 ID=Msa1306800-mRNA-1:exon:539;Parent=Msa1306800-mRNA-1
chr8_4 exon 1757432 1757791 1757432 ID=Msa1306800-mRNA-1:exon:540;Parent=Msa1306800-mRNA-1
chr8_4 five_prime_UTR 1755258 1755302 1755258 ID=Msa1306800-mRNA-1:five_prime_utr;Parent=Msa1306800-mRNA-1
chr8_4 CDS 1755303 1755848 1755303 ID=Msa1306800-mRNA-1:cds;Parent=Msa1306800-mRNA-1
chr8_4 CDS 1756464 1756675 1756464 ID=Msa1306800-mRNA-1:cds;Parent=Msa1306800-mRNA-1
chr8_4 CDS 1756817 1757053 1756817 ID=Msa1306800-mRNA-1:cds;Parent=Msa1306800-mRNA-1
chr8_4 CDS 1757153 1757345 1757153 ID=Msa1306800-mRNA-1:cds;Parent=Msa1306800-mRNA-1
chr8_4 CDS 1757432 1757791 1757432 ID=Msa1306800-mRNA-1:cds;Parent=Msa1306800-mRNA-1
Gene Sequence

>Msa1306800

ATGGACTCAGCACGTGCTTGCTCTTTCTTCAAGTTCCTTTCCATAATACTTCTGTTAGTTACATTCCCTTCTATGCTTCCAACATCCTTGGCTAGTGGATTCTCAATCAAGGAAGCAACAGTGCAAGATCTTCAACTTGCTTTCCAAAGAAAGCAGTTAACATCAAGACAACTTGTTGAATTCTACCTGAAACAAATCAAAATACAAAACCCAGTTCTCAAAGGAGTCTTAGAGGTGAATCCAGATGCATTAGCACATGCTGATAGAGCTGATCAAGAGAGAAGGACCAAAGCAGCAGGTTCTCTTTCAGGGTTGCATGGAATACCTATTTTGGTTAAGGATAACATTGCAACTAAGGATAAGCTAAACACTACTGCAGGCTCTTTTGCACTGCTTGGCTCAGTAGTGCCAAGAGATGCTGGCGTAGTTAGCAGGTTAAGGAAAGTTGGGGCTATCATATTAGGGAAGGCCACCCTGAGTGAGTGGTCACATCAGAGGTCTAGTGAAGCTCCTAGTGGTTGGAATGCTAGAGGGGGACAAGGAAAGAATCCATACACATTGGATGATCCTTGTGGTTCAAGTAGTGGATCGGCAATTTCAGTAGCAGCAAATTTGGTGACTGTGTCGCTTGGTACTGAAACCGACGGCTCCATCTTATGCCCTTCAAGTATGAACTCAGTAGTAGGCATCAAACCAACAGTTGGTCTCACTAGTAGAGCAGGTGTAATTCCAATTAGCCCAAGGCAAGACACAGTTGGGCCAATTTGCAGGACCGTATCGGATGCTGCTTATGTTCTTGAAACCATAGCAGGCATAGACGCTTTAGATAAGAAAACAATTGAAGCATCAAAGTATATCCCAAAAGGTGGCTATGCTCAATTTCTAAAGAAAGACGGACTAAGAGGAAAAAGATTAGGAGTAGTGAGACTGTACTACAATTTTGGAAATGACACTTTTCTGCATGAAACTTTCAAGCTACACCTAAAAACGTTAAGGCAAAGAGGTGCTGTTTTGGTTGACGATTTGAAGATTGATAACATTGATCAAATTATCAGTGGTCAAAGTGAAGAGATTGCTTTGAATTTTGAATTCAAATTATCCTTGAACGCATACCTGAAAGATTTAGTTGTTTCACCAGTGAAAAGCTTGGCAGATGTGATAGTCTTCAACAAGAAACACCCAAAATTGGAGAAAATGGAGTATGGCCAAGATCTCATGCTGCAAGCTGAAAAGACAAATGGAATTGGGAAAGCAGAGAAACAAGCTTTATTGAACATGACAAGATGGTCACAAAATGGGTTTGAGAAACTGATGAAAAGAAATAAACTTGATGCTGTGGTAACACCTTTTTCATACTTTAGCGGCGTACTTGCTATTGGAGGTTATCCTGGAGTCATTGTTCCAGCAGGATATGAAAAGGGCATGCCATTTGGAATTTGCTTTGGAGGTTTGAAAGGCTCAGAGCCGAAGTTAATTGAAATTGCTTATTCATTTGAACAAGCAACTTTGATCAGAAATCCCCCTCCGCTTCGAAAGTTAGAAGTGTGA

Protein sequence

>Msa1306800

MDSARACSFFKFLSIILLLVTFPSMLPTSLASGFSIKEATVQDLQLAFQRKQLTSRQLVEFYLKQIKIQNPVLKGVLEVNPDALAHADRADQERRTKAAGSLSGLHGIPILVKDNIATKDKLNTTAGSFALLGSVVPRDAGVVSRLRKVGAIILGKATLSEWSHQRSSEAPSGWNARGGQGKNPYTLDDPCGSSSGSAISVAANLVTVSLGTETDGSILCPSSMNSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAAYVLETIAGIDALDKKTIEASKYIPKGGYAQFLKKDGLRGKRLGVVRLYYNFGNDTFLHETFKLHLKTLRQRGAVLVDDLKIDNIDQIISGQSEEIALNFEFKLSLNAYLKDLVVSPVKSLADVIVFNKKHPKLEKMEYGQDLMLQAEKTNGIGKAEKQALLNMTRWSQNGFEKLMKRNKLDAVVTPFSYFSGVLAIGGYPGVIVPAGYEKGMPFGICFGGLKGSEPKLIEIAYSFEQATLIRNPPPLRKLEV*