Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564100 | XP_003629610.1 | 99.794 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564100 | sp|Q01781|SAHH_PETCR | 89.897 | 485 | 49 | 0 | 1 | 485 | 1 | 485 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564100 | Q84RD9 | 99.794 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1006 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0564100 | Msa0700590 | 0.828729 | 7.646516e-55 | -8.615850e-47 |
| Msa0564100 | Msa1408560 | 0.904189 | 1.590808e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564100 | MtrunA17_Chr8g0378071 | 99.794 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1006 |
| Msa0564100 | MtrunA17_Chr3g0121861 | 91.134 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564100 | AT4G13940.1 | 89.691 | 485 | 50 | 0 | 1 | 485 | 1 | 485 | 0.0 | 909 |
| Msa0564100 | AT3G23810.1 | 88.866 | 485 | 54 | 0 | 1 | 485 | 1 | 485 | 0.0 | 899 |
| Msa0564100 | AT4G13940.3 | 80.412 | 485 | 50 | 1 | 1 | 485 | 1 | 440 | 0.0 | 801 |
| Msa0564100 | AT4G13940.2 | 88.705 | 363 | 41 | 0 | 123 | 485 | 2 | 364 | 0.0 | 688 |
| Msa0564100 | AT4G13940.4 | 89.935 | 308 | 31 | 0 | 1 | 308 | 1 | 308 | 0.0 | 568 |
Find 206 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTACCAATTTATTATTA+TGG | 0.169252 | 4_1:+64582743 | None:intergenic |
| TCGGGTCCATAATAATAAAT+TGG | 0.218649 | 4_1:-64582749 | Msa0564100:five_prime_UTR |
| GGCTCTCATGGAAGGTTTCC+AGG | 0.251177 | 4_1:-64581042 | Msa0564100:CDS |
| GTGAAGAGATCCGGTGATTC+TGG | 0.280832 | 4_1:+64582391 | None:intergenic |
| GTGGGTGTTGTCTGTGGATA+TGG | 0.293422 | 4_1:-64581152 | Msa0564100:CDS |
| CGAGGGTCGTTTGATGAACT+TGG | 0.298869 | 4_1:-64580769 | Msa0564100:CDS |
| CTTCAGCCTTAACACCTTCA+TGG | 0.301539 | 4_1:+64582114 | None:intergenic |
| GGATGAGAGTGGGTATAAAT+AGG | 0.306001 | 4_1:+64582660 | None:intergenic |
| GTACTGAACGTGCTCTTGAC+TGG | 0.316338 | 4_1:-64582196 | Msa0564100:CDS |
| GATGAGAGTGGGTATAAATA+GGG | 0.321093 | 4_1:+64582661 | None:intergenic |
| TTGAAGAGTCTCACCCTTCC+AGG | 0.334073 | 4_1:+64582232 | None:intergenic |
| ATGAACTTGGGTTGTGCTAC+TGG | 0.335401 | 4_1:-64580756 | Msa0564100:CDS |
| GGTGATTCTGGCTCCTTTGA+AGG | 0.346643 | 4_1:+64582403 | None:intergenic |
| TTCATCTTACGATACCTCTT+AGG | 0.348879 | 4_1:+64581990 | None:intergenic |
| ATGATGCCGGTGTTGGTCTC+AGG | 0.349022 | 4_1:+64580801 | None:intergenic |
| TTCTGGCTCCTTTGAAGGGT+TGG | 0.349289 | 4_1:+64582408 | None:intergenic |
| ATCGAAACCCTAACCGCTTT+AGG | 0.353133 | 4_1:-64582344 | Msa0564100:CDS |
| TCTGGCTCCTTTGAAGGGTT+GGG | 0.353262 | 4_1:+64582409 | None:intergenic |
| CTGTTTCGCTGTAGACCAAA+TGG | 0.354340 | 4_1:-64580138 | Msa0564100:three_prime_UTR |
| GGTTTGAATAATGCCTTGTT+TGG | 0.355894 | 4_1:-64580291 | Msa0564100:three_prime_UTR |
| GATCTTTCCCAAGCTGATTT+CGG | 0.357889 | 4_1:-64582503 | Msa0564100:CDS |
| GCTACTGATGTTATGATTGC+TGG | 0.358771 | 4_1:-64581179 | Msa0564100:CDS |
| TGATCCAATCTGTGCCCTTC+AGG | 0.361459 | 4_1:-64581063 | Msa0564100:CDS |
| CTGTAGTGAGCGGGCTTGTA+TGG | 0.374543 | 4_1:+64580513 | None:intergenic |
| CCTGTCGGTTTGAGGCTTGA+TGG | 0.375154 | 4_1:+64580833 | None:intergenic |
| GAGTCCGGGCATCTCGATTT+CGG | 0.376850 | 4_1:+64582460 | None:intergenic |
| TAACAGTTTGACAACTTGTA+TGG | 0.382331 | 4_1:-64581236 | Msa0564100:intron |
| CTGGCCGTGAATACAAGGTT+AGG | 0.382685 | 4_1:-64582526 | Msa0564100:CDS |
| CTTCAGCACCTAAAGCGGTT+AGG | 0.385562 | 4_1:+64582336 | None:intergenic |
| TTTCAGAATTGTGTTAGAAT+AGG | 0.387492 | 4_1:-64580391 | Msa0564100:three_prime_UTR |
| CATGATGATGTCCTTGTTAC+CGG | 0.390795 | 4_1:+64580968 | None:intergenic |
| TACTGAACGTGCTCTTGACT+GGG | 0.392027 | 4_1:-64582195 | Msa0564100:CDS |
| CGTGCTCTTGACTGGGGTCC+AGG | 0.395326 | 4_1:-64582188 | Msa0564100:CDS |
| CTTGTATTCACGGCCAGCTT+GGG | 0.401407 | 4_1:+64582532 | None:intergenic |
| GCACTTCATCTTGGCAAGCT+TGG | 0.402551 | 4_1:-64580597 | Msa0564100:CDS |
| ACAGCGCCGCCGTCTTCGCC+TGG | 0.403265 | 4_1:-64582250 | Msa0564100:CDS |
| CTGTGCCCTTCAGGCTCTCA+TGG | 0.405295 | 4_1:-64581054 | Msa0564100:CDS |
| GTTTGAATAATGCCTTGTTT+GGG | 0.411404 | 4_1:-64580290 | Msa0564100:three_prime_UTR |
| AGGCATTATTCAAACCCATT+TGG | 0.412199 | 4_1:+64580123 | None:intergenic |
| AGGCATTATTCAAACCCATT+TGG | 0.412199 | 4_1:+64580298 | None:intergenic |
| GTCACGAGCGATGGCGGCGG+CGG | 0.418277 | 4_1:+64582271 | None:intergenic |
| CGCCGCCGTCTTCGCCTGGA+AGG | 0.420226 | 4_1:-64582246 | Msa0564100:CDS |
| CTAAACGCAGCGTTTGTGTA+AGG | 0.421095 | 4_1:+64582593 | None:intergenic |
| TTTCGATGAGGACGGCGGTT+TGG | 0.421389 | 4_1:+64582360 | None:intergenic |
| GACAATGAAATTGATATGTC+TGG | 0.422786 | 4_1:-64580888 | Msa0564100:CDS |
| TTGTGGAATGAGAGGAAATC+TGG | 0.425669 | 4_1:-64580675 | Msa0564100:CDS |
| TTCAGCACCTAAAGCGGTTA+GGG | 0.426813 | 4_1:+64582337 | None:intergenic |
| GGCTTGTATGGACCCTCAAC+TGG | 0.426904 | 4_1:+64580525 | None:intergenic |
| TTGAGTTGAGAAAATGTTGC+AGG | 0.426919 | 4_1:+64582301 | None:intergenic |
| CTTGACTGGGGTCCAGGTGG+TGG | 0.427852 | 4_1:-64582182 | Msa0564100:CDS |
| ACGAGCTCCAGCTTGCTTCA+AGG | 0.428897 | 4_1:+64581103 | None:intergenic |
| AATGCCATTGTTTGCAACAT+TGG | 0.434082 | 4_1:-64580918 | Msa0564100:CDS |
| TATAAATAGGGGTTTAAGTA+AGG | 0.442694 | 4_1:+64582673 | None:intergenic |
| AGTTCGGCAGGACATGAGTC+CGG | 0.444561 | 4_1:+64582445 | None:intergenic |
| TTTGTAATGTTAACAGTGGA+TGG | 0.448051 | 4_1:-64580366 | Msa0564100:three_prime_UTR |
| GTTGATCCATGAAGGTGTTA+AGG | 0.449859 | 4_1:-64582120 | Msa0564100:CDS |
| ATGTCCTGCCGAACTGAGTT+CGG | 0.451578 | 4_1:-64582437 | Msa0564100:CDS |
| TGATGTAATCAGCCTGTGAT+TGG | 0.451589 | 4_1:+64580553 | None:intergenic |
| TTCTGTTGAATGAGACCAAA+TGG | 0.452922 | 4_1:-64580313 | Msa0564100:three_prime_UTR |
| CCTTGTATTCACGGCCAGCT+TGG | 0.456846 | 4_1:+64582531 | None:intergenic |
| GTAAGAGGAAGGCAACCTAT+TGG | 0.458244 | 4_1:-64580337 | Msa0564100:three_prime_UTR |
| TGTACTGGACCGGACTTGAT+CGG | 0.461857 | 4_1:+64582713 | None:intergenic |
| CTCATTCAACAGAAACCAAT+AGG | 0.462764 | 4_1:+64580322 | None:intergenic |
| GCCCTTCAGGCTCTCATGGA+AGG | 0.462937 | 4_1:-64581050 | Msa0564100:CDS |
| GGGTTTAAGTAAGGAGTTGG+TGG | 0.465915 | 4_1:+64582682 | None:intergenic |
| GCTGTTGCCTTGAAGCAAGC+TGG | 0.466153 | 4_1:-64581110 | Msa0564100:CDS |
| CGGCATCATTGTCTTGGCCG+AGG | 0.467549 | 4_1:-64580787 | Msa0564100:CDS |
| CCAAGCTGGCCGTGAATACA+AGG | 0.469820 | 4_1:-64582531 | Msa0564100:CDS |
| GTACTGGACCGGACTTGATC+GGG | 0.471218 | 4_1:+64582714 | None:intergenic |
| TGAGAGATGATGAGAGGTCG+AGG | 0.471930 | 4_1:-64580486 | Msa0564100:three_prime_UTR |
| GATCCCTAACCTTGTATTCA+CGG | 0.472470 | 4_1:+64582522 | None:intergenic |
| AGTGGATGGGGAATGGTAAG+AGG | 0.473310 | 4_1:-64580352 | Msa0564100:three_prime_UTR |
| GTGATTCTGGCTCCTTTGAA+GGG | 0.473594 | 4_1:+64582404 | None:intergenic |
| CATCATCAAGAGTCAGAACC+TGG | 0.474414 | 4_1:+64581024 | None:intergenic |
| TACATCAGTGTGCCAGTTGA+GGG | 0.474583 | 4_1:-64580537 | Msa0564100:CDS |
| GAGCGATGGCGGCGGCGGCG+TGG | 0.480226 | 4_1:+64582276 | None:intergenic |
| AAAACCCACCTGTCGGTTTG+AGG | 0.483314 | 4_1:+64580825 | None:intergenic |
| GAGCAGGACATCACAAAACT+AGG | 0.485567 | 4_1:+64580729 | None:intergenic |
| GTGCTTACTATCATTAGAGA+TGG | 0.486117 | 4_1:-64582026 | Msa0564100:CDS |
| GTCTGTGGATATGGAGATGT+TGG | 0.487898 | 4_1:-64581143 | Msa0564100:CDS |
| GATGAGGACGGCGGTTTGGA+TGG | 0.488837 | 4_1:+64582364 | None:intergenic |
| AAGATGAAGGATAGACTTGT+TGG | 0.490166 | 4_1:-64581975 | Msa0564100:CDS |
| GAGAGAGAAGGGAGTGTGAG+AGG | 0.495581 | 4_1:+64582623 | None:intergenic |
| GCTCCTTTGAAGGGTTGGGA+TGG | 0.496720 | 4_1:+64582413 | None:intergenic |
| GCCTAAGCATCTTGATGAGA+AGG | 0.497581 | 4_1:-64580625 | Msa0564100:CDS |
| TGTAATGTTAACAGTGGATG+GGG | 0.497680 | 4_1:-64580364 | Msa0564100:three_prime_UTR |
| ATCTGGAAAGTATGAGAAGA+AGG | 0.498460 | 4_1:-64580658 | Msa0564100:CDS |
| AGAGCCTGAAGGGCACAGAT+TGG | 0.501229 | 4_1:+64581059 | None:intergenic |
| TTGTAATGTTAACAGTGGAT+GGG | 0.501283 | 4_1:-64580365 | Msa0564100:three_prime_UTR |
| TGCTTACTATCATTAGAGAT+GGG | 0.504002 | 4_1:-64582025 | Msa0564100:CDS |
| TAGGGGTTTAAGTAAGGAGT+TGG | 0.504325 | 4_1:+64582679 | None:intergenic |
| TGTTTCGCTGTAGACCAAAT+GGG | 0.505153 | 4_1:-64580137 | Msa0564100:three_prime_UTR |
| TGGTCCGAACTCAGTTCGGC+AGG | 0.506633 | 4_1:+64582433 | None:intergenic |
| AAGGTGGCTGCACTTCATCT+TGG | 0.508177 | 4_1:-64580606 | Msa0564100:CDS |
| ATGGTGACGCGCTTCACACC+AGG | 0.509074 | 4_1:+64580852 | None:intergenic |
| AGACTACTACTGGTGTTAAG+AGG | 0.510864 | 4_1:-64581941 | Msa0564100:CDS |
| CATACAAGCCCGCTCACTAC+AGG | 0.511416 | 4_1:-64580512 | Msa0564100:CDS |
| GGGATGGTCCGAACTCAGTT+CGG | 0.513848 | 4_1:+64582429 | None:intergenic |
| GGCGCTGTCACGAGCGATGG+CGG | 0.513966 | 4_1:+64582265 | None:intergenic |
| GAGAGATGATGAGAGGTCGA+GGG | 0.518522 | 4_1:-64580485 | Msa0564100:three_prime_UTR |
| TTCAAAGGAGCCAGAATCAC+CGG | 0.519431 | 4_1:-64582401 | Msa0564100:CDS |
| GTTCGGCAGGACATGAGTCC+GGG | 0.520546 | 4_1:+64582446 | None:intergenic |
| TCTGTTGAATGAGACCAAAT+GGG | 0.523199 | 4_1:-64580312 | Msa0564100:three_prime_UTR |
| TGATGTTATGATTGCTGGAA+AGG | 0.524488 | 4_1:-64581174 | Msa0564100:CDS |
| AGAGAGAGTGAGGATGAGAG+TGG | 0.525352 | 4_1:+64582649 | None:intergenic |
| GACATCTTTGTTACCACCAC+CGG | 0.528009 | 4_1:-64580987 | Msa0564100:CDS |
| GAGGGTCGTTTGATGAACTT+GGG | 0.529037 | 4_1:-64580768 | Msa0564100:CDS |
| TTGGTGGAGTGGAATTGTAC+TGG | 0.530673 | 4_1:+64582698 | None:intergenic |
| CAAGACAATGATGCCGGTGT+TGG | 0.531085 | 4_1:+64580794 | None:intergenic |
| GTGAGACTCTTCAAGAGTAT+TGG | 0.531338 | 4_1:-64582223 | Msa0564100:CDS |
| CAACACCGGCATCATTGTCT+TGG | 0.531574 | 4_1:-64580793 | Msa0564100:CDS |
| GAGTCGTTGACATTAATAGC+AGG | 0.532386 | 4_1:+64581882 | None:intergenic |
| GCTGTCACGAGCGATGGCGG+CGG | 0.534560 | 4_1:+64582268 | None:intergenic |
| CGAGTCGGCCGAAATCAGCT+TGG | 0.535009 | 4_1:+64582495 | None:intergenic |
| CACTTCCCGATGGTTTGATG+AGG | 0.537448 | 4_1:-64581202 | Msa0564100:CDS |
| GAGTCGGCCGAAATCAGCTT+GGG | 0.537684 | 4_1:+64582496 | None:intergenic |
| TGGCCGTGAATACAAGGTTA+GGG | 0.537694 | 4_1:-64582525 | Msa0564100:CDS |
| ATGAGAGTGGGTATAAATAG+GGG | 0.538212 | 4_1:+64582662 | None:intergenic |
| TGTTAACAGTGGATGGGGAA+TGG | 0.539206 | 4_1:-64580359 | Msa0564100:three_prime_UTR |
| GTCCTGCTCCTTCACCAACC+AGG | 0.539452 | 4_1:-64580715 | Msa0564100:CDS |
| GATGTCCTTGTTACCGGTGG+TGG | 0.541620 | 4_1:+64580974 | None:intergenic |
| GAGAGAGTGAGGATGAGAGT+GGG | 0.542482 | 4_1:+64582650 | None:intergenic |
| TGATGCCGGTGTTGGTCTCA+GGG | 0.542982 | 4_1:+64580802 | None:intergenic |
| CTTTAGGTGCTGAAGTCCGT+TGG | 0.543805 | 4_1:-64582328 | Msa0564100:CDS |
| TTATCAGTAGAACTTGGATC+AGG | 0.545116 | 4_1:+64582065 | None:intergenic |
| GGCATCATTGTCTTGGCCGA+GGG | 0.546680 | 4_1:-64580786 | Msa0564100:CDS |
| GAAGAACTTTATGAGAAGAC+TGG | 0.546774 | 4_1:-64582095 | Msa0564100:CDS |
| CCATCGTCAACAATCAAGTC+AGG | 0.547026 | 4_1:+64582158 | None:intergenic |
| AGACTCTTCAAGAGTATTGG+TGG | 0.548092 | 4_1:-64582220 | Msa0564100:CDS |
| TCAGCGTTATCAGTAGAACT+TGG | 0.550511 | 4_1:+64582059 | None:intergenic |
| TAAGTAAGGAGTTGGTGGAG+TGG | 0.552531 | 4_1:+64582687 | None:intergenic |
| ATCAAGTCAGGACCACCACC+TGG | 0.553340 | 4_1:+64582170 | None:intergenic |
| TTACATCAGTGTGCCAGTTG+AGG | 0.554609 | 4_1:-64580538 | Msa0564100:CDS |
| TAAACGCAGCGTTTGTGTAA+GGG | 0.554824 | 4_1:+64582594 | None:intergenic |
| CACCAAGCTTTCCCAATCAC+AGG | 0.556789 | 4_1:-64580565 | Msa0564100:CDS |
| CTCGGCCAAGACAATGATGC+CGG | 0.557327 | 4_1:+64580788 | None:intergenic |
| GTAGCCCTCATCAAACCATC+GGG | 0.557790 | 4_1:+64581197 | None:intergenic |
| GATGTAATCAGCCTGTGATT+GGG | 0.561747 | 4_1:+64580554 | None:intergenic |
| AGCCTGTGATTGGGAAAGCT+TGG | 0.562267 | 4_1:+64580563 | None:intergenic |
| TCATTGCTCAGCTTGAGTTG+TGG | 0.563092 | 4_1:-64580692 | Msa0564100:CDS |
| CAAGTTCATCAAACGACCCT+CGG | 0.565126 | 4_1:+64580770 | None:intergenic |
| GTTATGATTGCTGGAAAGGT+GGG | 0.565954 | 4_1:-64581170 | Msa0564100:CDS |
| GATGGGGAATGGTAAGAGGA+AGG | 0.569401 | 4_1:-64580348 | Msa0564100:three_prime_UTR |
| AGTAGCCCTCATCAAACCAT+CGG | 0.569406 | 4_1:+64581196 | None:intergenic |
| TCTCAATACCTGTAGTGAGC+GGG | 0.569862 | 4_1:+64580504 | None:intergenic |
| ACCTTCCATGAGAGCCTGAA+GGG | 0.569942 | 4_1:+64581049 | None:intergenic |
| TGTTACCACCACCGGTAACA+AGG | 0.571856 | 4_1:-64580979 | Msa0564100:CDS |
| CTTTATCAGATGCAAGCTAG+TGG | 0.573265 | 4_1:-64581918 | Msa0564100:CDS |
| TGCCGTCACTCACTTCCCGA+TGG | 0.573321 | 4_1:-64581212 | Msa0564100:CDS |
| TGAGAGGTGAAGAGAGAGTG+AGG | 0.573371 | 4_1:+64582639 | None:intergenic |
| GATGGTCATGTGAAGAGATC+CGG | 0.575220 | 4_1:+64582382 | None:intergenic |
| GGTTGAAGACTGATCCTAAG+AGG | 0.575943 | 4_1:-64582004 | Msa0564100:CDS |
| GGCGGCGCTGTCACGAGCGA+TGG | 0.576329 | 4_1:+64582262 | None:intergenic |
| GACCTGGTTGGTGAAGGAGC+AGG | 0.578362 | 4_1:+64580713 | None:intergenic |
| TAAGAGGTATCGTAAGATGA+AGG | 0.581482 | 4_1:-64581988 | Msa0564100:CDS |
| GCTACTTTGTTGATCCATGA+AGG | 0.581832 | 4_1:-64582128 | Msa0564100:CDS |
| CTCACCCTTCCAGGCGAAGA+CGG | 0.582229 | 4_1:+64582241 | None:intergenic |
| TTGGCCGAAATCGAGATGCC+CGG | 0.583401 | 4_1:-64582464 | Msa0564100:CDS |
| GGAAAGGTGGGTGTTGTCTG+TGG | 0.584558 | 4_1:-64581158 | Msa0564100:CDS |
| AGCTTGAGTTGTGGAATGAG+AGG | 0.585507 | 4_1:-64580683 | Msa0564100:CDS |
| ACCTTCTCATCAAGATGCTT+AGG | 0.585589 | 4_1:+64580624 | None:intergenic |
| GCCGCCGTCTTCGCCTGGAA+GGG | 0.586397 | 4_1:-64582245 | Msa0564100:CDS |
| TCATCATGGTTGACGACATG+AGG | 0.586533 | 4_1:-64580953 | Msa0564100:CDS |
| CCATCAAGCCTCAAACCGAC+AGG | 0.586572 | 4_1:-64580833 | Msa0564100:CDS |
| GGACCATCCCAACCCTTCAA+AGG | 0.586905 | 4_1:-64582416 | Msa0564100:CDS |
| GTGACCAATGTTGCAAACAA+TGG | 0.589198 | 4_1:+64580914 | None:intergenic |
| CGGTAACAAGGACATCATCA+TGG | 0.591464 | 4_1:-64580967 | Msa0564100:CDS |
| TGTTATGATTGCTGGAAAGG+TGG | 0.598138 | 4_1:-64581171 | Msa0564100:CDS |
| AACCTTCCATGAGAGCCTGA+AGG | 0.599013 | 4_1:+64581048 | None:intergenic |
| GGAGTGGAATTGTACTGGAC+CGG | 0.599374 | 4_1:+64582703 | None:intergenic |
| TCAAGCCTCAAACCGACAGG+TGG | 0.599721 | 4_1:-64580830 | Msa0564100:CDS |
| ACAGTAGAGAAAACCCAAGC+TGG | 0.601142 | 4_1:-64582545 | Msa0564100:CDS |
| ACTTCCCGATGGTTTGATGA+GGG | 0.603102 | 4_1:-64581201 | Msa0564100:CDS |
| AGCAATGACCTGGTTGGTGA+AGG | 0.606777 | 4_1:+64580707 | None:intergenic |
| GTTTCTGAAGAGACTACTAC+TGG | 0.608136 | 4_1:-64581951 | Msa0564100:CDS |
| CTCTCAATACCTGTAGTGAG+CGG | 0.610233 | 4_1:+64580503 | None:intergenic |
| CGACTCTGTTACCAAGAGCA+AGG | 0.612040 | 4_1:-64581865 | Msa0564100:intron |
| CGGCCGACTCGAGATCGAGT+TGG | 0.613698 | 4_1:-64582483 | Msa0564100:CDS |
| ACTCAAGCTGAGCAATGACC+TGG | 0.617464 | 4_1:+64580697 | None:intergenic |
| AGCAGGACATCACAAAACTA+GGG | 0.618545 | 4_1:+64580730 | None:intergenic |
| AACCATCGGGAAGTGAGTGA+CGG | 0.619456 | 4_1:+64581210 | None:intergenic |
| TTTGAATAATGCCTTGTTTG+GGG | 0.620215 | 4_1:-64580289 | Msa0564100:three_prime_UTR |
| ACCCTTCCAGGCGAAGACGG+CGG | 0.621848 | 4_1:+64582244 | None:intergenic |
| GGTTAGGGTTTCGATGAGGA+CGG | 0.624245 | 4_1:+64582352 | None:intergenic |
| CTCAGGGAAAACCCACCTGT+CGG | 0.631363 | 4_1:+64580818 | None:intergenic |
| AAATGTTGCAGGAACACCAA+CGG | 0.640245 | 4_1:+64582312 | None:intergenic |
| GGATATGGAGATGTTGGAAA+GGG | 0.640627 | 4_1:-64581137 | Msa0564100:CDS |
| TGACACACAATCCCCAAACA+AGG | 0.645253 | 4_1:+64580278 | None:intergenic |
| TGGATATGGAGATGTTGGAA+AGG | 0.645644 | 4_1:-64581138 | Msa0564100:CDS |
| CAAGCCTCAAACCGACAGGT+GGG | 0.648729 | 4_1:-64580829 | Msa0564100:CDS |
| TAAGCATCTTGATGAGAAGG+TGG | 0.649946 | 4_1:-64580622 | Msa0564100:CDS |
| ACGGACTTCAGCACCTAAAG+CGG | 0.651771 | 4_1:+64582331 | None:intergenic |
| AGTCGTTGACATTAATAGCA+GGG | 0.657078 | 4_1:+64581883 | None:intergenic |
| AGGTATTGAGAGATGATGAG+AGG | 0.657461 | 4_1:-64580492 | Msa0564100:exon |
| GCTCTTGACTGGGGTCCAGG+TGG | 0.660501 | 4_1:-64582185 | Msa0564100:CDS |
| TCTGGACTTGAGAACTACCC+TGG | 0.662161 | 4_1:-64580870 | Msa0564100:CDS |
| CGGCCAACTCGATCTCGAGT+CGG | 0.664458 | 4_1:+64582480 | None:intergenic |
| ACTTTATGAGAAGACTGGTG+AGG | 0.668763 | 4_1:-64582090 | Msa0564100:CDS |
| GACTTGATTGTTGACGATGG+TGG | 0.670668 | 4_1:-64582155 | Msa0564100:CDS |
| CCTGACTTGATTGTTGACGA+TGG | 0.671777 | 4_1:-64582158 | Msa0564100:CDS |
| TAGGGTTTCGATGAGGACGG+CGG | 0.676084 | 4_1:+64582355 | None:intergenic |
| AAGCTGAGCAATGACCTGGT+TGG | 0.688031 | 4_1:+64580701 | None:intergenic |
| TGGTGACGCGCTTCACACCA+GGG | 0.688289 | 4_1:+64580853 | None:intergenic |
| ACTGAACGTGCTCTTGACTG+GGG | 0.690263 | 4_1:-64582194 | Msa0564100:CDS |
| GATGATGTCCTTGTTACCGG+TGG | 0.708198 | 4_1:+64580971 | None:intergenic |
| AAGCGGTTAGGGTTTCGATG+AGG | 0.719864 | 4_1:+64582348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAATATTTTGATC+TGG | - | chr4_1:64581084-64581103 | Msa0564100:CDS | 10.0% |
| !!! | TTTTTAAAATATTTTGATCT+GGG | - | chr4_1:64581085-64581104 | Msa0564100:CDS | 10.0% |
| !!! | GATTATTTTAAAATAAGAAA+AGG | + | chr4_1:64582699-64582718 | None:intergenic | 10.0% |
| !! | TTCTTACCAATTTATTATTA+TGG | + | chr4_1:64580144-64580163 | None:intergenic | 15.0% |
| !! | AAATGAAAATAAACAAATCT+AGG | + | chr4_1:64581065-64581084 | None:intergenic | 15.0% |
| !!! | TTTTAAAATATTTTGATCTG+GGG | - | chr4_1:64581086-64581105 | Msa0564100:CDS | 15.0% |
| !! | TAGATATTGGATTTGATAAA+TGG | - | chr4_1:64581396-64581415 | Msa0564100:intron | 20.0% |
| ! | TATAAATAGGGGTTTAAGTA+AGG | + | chr4_1:64580214-64580233 | None:intergenic | 25.0% |
| !!! | ATTTATGCTTTTTCATGTGT+TGG | - | chr4_1:64581125-64581144 | Msa0564100:CDS | 25.0% |
| !!! | TGAAATTGAGTATTTGGTTT+TGG | - | chr4_1:64581297-64581316 | Msa0564100:intron | 25.0% |
| ! | ATCTTGGATTTAACAAAGTT+AGG | - | chr4_1:64581512-64581531 | Msa0564100:intron | 25.0% |
| ! | TTACAAAACCATAGATCAAA+TGG | + | chr4_1:64581631-64581650 | None:intergenic | 25.0% |
| !!! | AGAAAATGGGTTTTATGAAA+TGG | - | chr4_1:64582426-64582445 | Msa0564100:CDS | 25.0% |
| !! | TGATTTTTCATTTTCCTTGT+TGG | - | chr4_1:64582451-64582470 | Msa0564100:CDS | 25.0% |
| !! | ATTTTCCTTGTTGGATTTTT+TGG | - | chr4_1:64582460-64582479 | Msa0564100:CDS | 25.0% |
| ! | TAATTCCAAAAAATCCAACA+AGG | + | chr4_1:64582468-64582487 | None:intergenic | 25.0% |
| ! | TTTCAGAATTGTGTTAGAAT+AGG | - | chr4_1:64582493-64582512 | Msa0564100:CDS | 25.0% |
| !!! | TCTCATTTTTCAAACATAGA+AGG | + | chr4_1:64582659-64582678 | None:intergenic | 25.0% |
| TCGGGTCCATAATAATAAAT+TGG | - | chr4_1:64580135-64580154 | Msa0564100:three_prime_UTR | 30.0% | |
| TGCTTACTATCATTAGAGAT+GGG | - | chr4_1:64580859-64580878 | Msa0564100:CDS | 30.0% | |
| AAAAAAACAAACCTTGCTCT+TGG | + | chr4_1:64581033-64581052 | None:intergenic | 30.0% | |
| !!! | CTTTTTCATGTGTTGGTTTA+GGG | - | chr4_1:64581132-64581151 | Msa0564100:CDS | 30.0% |
| ! | TGTGTTGTTGTATGTTATTG+AGG | - | chr4_1:64581173-64581192 | Msa0564100:CDS | 30.0% |
| TTTAGTGTGAAATTGAGTGT+TGG | - | chr4_1:64581207-64581226 | Msa0564100:CDS | 30.0% | |
| TTAGTGTGAAATTGAGTGTT+GGG | - | chr4_1:64581208-64581227 | Msa0564100:CDS | 30.0% | |
| TCATTCACAAAACTTCATTC+AGG | + | chr4_1:64581264-64581283 | None:intergenic | 30.0% | |
| GTAGTGTGAAATTGAGTATT+TGG | - | chr4_1:64581291-64581310 | Msa0564100:intron | 30.0% | |
| CAGGACATTTATCAAACAAT+TGG | + | chr4_1:64581328-64581347 | None:intergenic | 30.0% | |
| TAAATGTCCTGAATGAAGTT+TGG | - | chr4_1:64581337-64581356 | Msa0564100:intron | 30.0% | |
| AGTTAACTATGATGTGAACT+TGG | - | chr4_1:64581460-64581479 | Msa0564100:intron | 30.0% | |
| ! | TGTGAACTTGGTTGTATTTT+TGG | - | chr4_1:64581472-64581491 | Msa0564100:intron | 30.0% |
| !!! | ACTATAGCATGTTTTGATCT+TGG | - | chr4_1:64581496-64581515 | Msa0564100:intron | 30.0% |
| TTAACAAAGTTAGGTGTTTG+CGG | - | chr4_1:64581521-64581540 | Msa0564100:intron | 30.0% | |
| !! | TGAATTTAGTTCCTGGATTT+TGG | - | chr4_1:64581565-64581584 | Msa0564100:intron | 30.0% |
| TAACAGTTTGACAACTTGTA+TGG | - | chr4_1:64581648-64581667 | Msa0564100:intron | 30.0% | |
| GACAATGAAATTGATATGTC+TGG | - | chr4_1:64581996-64582015 | Msa0564100:CDS | 30.0% | |
| ! | GGTTTTTGTAATGTTAACAG+TGG | - | chr4_1:64582514-64582533 | Msa0564100:CDS | 30.0% |
| TTTGTAATGTTAACAGTGGA+TGG | - | chr4_1:64582518-64582537 | Msa0564100:CDS | 30.0% | |
| TTGTAATGTTAACAGTGGAT+GGG | - | chr4_1:64582519-64582538 | Msa0564100:CDS | 30.0% | |
| !! | GTTTGAATAATGCCTTGTTT+GGG | - | chr4_1:64582594-64582613 | Msa0564100:five_prime_UTR | 30.0% |
| !! | TTTGAATAATGCCTTGTTTG+GGG | - | chr4_1:64582595-64582614 | Msa0564100:five_prime_UTR | 30.0% |
| AATAAAAACCCGATCAAGTC+CGG | - | chr4_1:64580162-64580181 | Msa0564100:three_prime_UTR | 35.0% | |
| ATGAGAGTGGGTATAAATAG+GGG | + | chr4_1:64580225-64580244 | None:intergenic | 35.0% | |
| GATGAGAGTGGGTATAAATA+GGG | + | chr4_1:64580226-64580245 | None:intergenic | 35.0% | |
| !! | TTGAGTTGAGAAAATGTTGC+AGG | + | chr4_1:64580586-64580605 | None:intergenic | 35.0% |
| GAAGAACTTTATGAGAAGAC+TGG | - | chr4_1:64580789-64580808 | Msa0564100:CDS | 35.0% | |
| TTATCAGTAGAACTTGGATC+AGG | + | chr4_1:64580822-64580841 | None:intergenic | 35.0% | |
| GTGCTTACTATCATTAGAGA+TGG | - | chr4_1:64580858-64580877 | Msa0564100:CDS | 35.0% | |
| TTCATCTTACGATACCTCTT+AGG | + | chr4_1:64580897-64580916 | None:intergenic | 35.0% | |
| !! | TAAGAGGTATCGTAAGATGA+AGG | - | chr4_1:64580896-64580915 | Msa0564100:CDS | 35.0% |
| AAGATGAAGGATAGACTTGT+TGG | - | chr4_1:64580909-64580928 | Msa0564100:CDS | 35.0% | |
| AGTCGTTGACATTAATAGCA+GGG | + | chr4_1:64581004-64581023 | None:intergenic | 35.0% | |
| !!! | GCTTTTTCATGTGTTGGTTT+AGG | - | chr4_1:64581131-64581150 | Msa0564100:CDS | 35.0% |
| !!! | TGAAATTGAGTGTTGGGTTT+TGG | - | chr4_1:64581214-64581233 | Msa0564100:CDS | 35.0% |
| ACACATACCAAACTTCATTC+AGG | + | chr4_1:64581347-64581366 | None:intergenic | 35.0% | |
| ! | GATGATGTGAATTTAGTTCC+TGG | - | chr4_1:64581558-64581577 | Msa0564100:intron | 35.0% |
| ! | TCTGTTTGCCATTTGATCTA+TGG | - | chr4_1:64581620-64581639 | Msa0564100:intron | 35.0% |
| TGATGTTATGATTGCTGGAA+AGG | - | chr4_1:64581710-64581729 | Msa0564100:intron | 35.0% | |
| AATGCCATTGTTTGCAACAT+TGG | - | chr4_1:64581966-64581985 | Msa0564100:CDS | 35.0% | |
| ! | ATCTGGAAAGTATGAGAAGA+AGG | - | chr4_1:64582226-64582245 | Msa0564100:CDS | 35.0% |
| TGTAATGTTAACAGTGGATG+GGG | - | chr4_1:64582520-64582539 | Msa0564100:CDS | 35.0% | |
| CTCATTCAACAGAAACCAAT+AGG | + | chr4_1:64582565-64582584 | None:intergenic | 35.0% | |
| TTCTGTTGAATGAGACCAAA+TGG | - | chr4_1:64582571-64582590 | Msa0564100:exon | 35.0% | |
| TCTGTTGAATGAGACCAAAT+GGG | - | chr4_1:64582572-64582591 | Msa0564100:exon | 35.0% | |
| AGGCATTATTCAAACCCATT+TGG | + | chr4_1:64582589-64582608 | None:intergenic | 35.0% | |
| ! | GGTTTGAATAATGCCTTGTT+TGG | - | chr4_1:64582593-64582612 | Msa0564100:five_prime_UTR | 35.0% |
| TAGGGGTTTAAGTAAGGAGT+TGG | + | chr4_1:64580208-64580227 | None:intergenic | 40.0% | |
| GGATGAGAGTGGGTATAAAT+AGG | + | chr4_1:64580227-64580246 | None:intergenic | 40.0% | |
| !!! | AAGGGTTTTGAGAGAGAGAA+GGG | + | chr4_1:64580275-64580294 | None:intergenic | 40.0% |
| !!! | TAAGGGTTTTGAGAGAGAGA+AGG | + | chr4_1:64580276-64580295 | None:intergenic | 40.0% |
| TAAACGCAGCGTTTGTGTAA+GGG | + | chr4_1:64580293-64580312 | None:intergenic | 40.0% | |
| GATCCCTAACCTTGTATTCA+CGG | + | chr4_1:64580365-64580384 | None:intergenic | 40.0% | |
| ! | GATCTTTCCCAAGCTGATTT+CGG | - | chr4_1:64580381-64580400 | Msa0564100:three_prime_UTR | 40.0% |
| AAATGTTGCAGGAACACCAA+CGG | + | chr4_1:64580575-64580594 | None:intergenic | 40.0% | |
| ! | GTGAGACTCTTCAAGAGTAT+TGG | - | chr4_1:64580661-64580680 | Msa0564100:CDS | 40.0% |
| !! | AGACTCTTCAAGAGTATTGG+TGG | - | chr4_1:64580664-64580683 | Msa0564100:CDS | 40.0% |
| ! | GCTACTTTGTTGATCCATGA+AGG | - | chr4_1:64580756-64580775 | Msa0564100:CDS | 40.0% |
| !! | GTTGATCCATGAAGGTGTTA+AGG | - | chr4_1:64580764-64580783 | Msa0564100:CDS | 40.0% |
| ACTTTATGAGAAGACTGGTG+AGG | - | chr4_1:64580794-64580813 | Msa0564100:CDS | 40.0% | |
| TCAGCGTTATCAGTAGAACT+TGG | + | chr4_1:64580828-64580847 | None:intergenic | 40.0% | |
| ! | GTTTCTGAAGAGACTACTAC+TGG | - | chr4_1:64580933-64580952 | Msa0564100:CDS | 40.0% |
| ! | AGACTACTACTGGTGTTAAG+AGG | - | chr4_1:64580943-64580962 | Msa0564100:CDS | 40.0% |
| CTTTATCAGATGCAAGCTAG+TGG | - | chr4_1:64580966-64580985 | Msa0564100:CDS | 40.0% | |
| GAGTCGTTGACATTAATAGC+AGG | + | chr4_1:64581005-64581024 | None:intergenic | 40.0% | |
| TGCAGCTATGGTGTAGATAT+TGG | - | chr4_1:64581383-64581402 | Msa0564100:intron | 40.0% | |
| GCTACTGATGTTATGATTGC+TGG | - | chr4_1:64581705-64581724 | Msa0564100:intron | 40.0% | |
| TGTTATGATTGCTGGAAAGG+TGG | - | chr4_1:64581713-64581732 | Msa0564100:intron | 40.0% | |
| GTTATGATTGCTGGAAAGGT+GGG | - | chr4_1:64581714-64581733 | Msa0564100:intron | 40.0% | |
| TGGATATGGAGATGTTGGAA+AGG | - | chr4_1:64581746-64581765 | Msa0564100:intron | 40.0% | |
| GGATATGGAGATGTTGGAAA+GGG | - | chr4_1:64581747-64581766 | Msa0564100:intron | 40.0% | |
| ! | CATGATGATGTCCTTGTTAC+CGG | + | chr4_1:64581919-64581938 | None:intergenic | 40.0% |
| GTGACCAATGTTGCAAACAA+TGG | + | chr4_1:64581973-64581992 | None:intergenic | 40.0% | |
| AGCAGGACATCACAAAACTA+GGG | + | chr4_1:64582157-64582176 | None:intergenic | 40.0% | |
| TTGTGGAATGAGAGGAAATC+TGG | - | chr4_1:64582209-64582228 | Msa0564100:CDS | 40.0% | |
| ACCTTCTCATCAAGATGCTT+AGG | + | chr4_1:64582263-64582282 | None:intergenic | 40.0% | |
| TAAGCATCTTGATGAGAAGG+TGG | - | chr4_1:64582262-64582281 | Msa0564100:CDS | 40.0% | |
| GATGTAATCAGCCTGTGATT+GGG | + | chr4_1:64582333-64582352 | None:intergenic | 40.0% | |
| TGATGTAATCAGCCTGTGAT+TGG | + | chr4_1:64582334-64582353 | None:intergenic | 40.0% | |
| !! | AGGTATTGAGAGATGATGAG+AGG | - | chr4_1:64582392-64582411 | Msa0564100:CDS | 40.0% |
| AGGTCGAGGGAAAAAGAAAA+TGG | - | chr4_1:64582412-64582431 | Msa0564100:CDS | 40.0% | |
| GGTCGAGGGAAAAAGAAAAT+GGG | - | chr4_1:64582413-64582432 | Msa0564100:CDS | 40.0% | |
| TGTTTCGCTGTAGACCAAAT+GGG | - | chr4_1:64582747-64582766 | Msa0564100:five_prime_UTR | 40.0% | |
| TTGGTGGAGTGGAATTGTAC+TGG | + | chr4_1:64580189-64580208 | None:intergenic | 45.0% | |
| !! | TAAGTAAGGAGTTGGTGGAG+TGG | + | chr4_1:64580200-64580219 | None:intergenic | 45.0% |
| GGGTTTAAGTAAGGAGTTGG+TGG | + | chr4_1:64580205-64580224 | None:intergenic | 45.0% | |
| CTAAACGCAGCGTTTGTGTA+AGG | + | chr4_1:64580294-64580313 | None:intergenic | 45.0% | |
| ACAGTAGAGAAAACCCAAGC+TGG | - | chr4_1:64580339-64580358 | Msa0564100:three_prime_UTR | 45.0% | |
| TGGCCGTGAATACAAGGTTA+GGG | - | chr4_1:64580359-64580378 | Msa0564100:three_prime_UTR | 45.0% | |
| !! | GTGATTCTGGCTCCTTTGAA+GGG | + | chr4_1:64580483-64580502 | None:intergenic | 45.0% |
| TTCAAAGGAGCCAGAATCAC+CGG | - | chr4_1:64580483-64580502 | Msa0564100:three_prime_UTR | 45.0% | |
| GATGGTCATGTGAAGAGATC+CGG | + | chr4_1:64580505-64580524 | None:intergenic | 45.0% | |
| ATCGAAACCCTAACCGCTTT+AGG | - | chr4_1:64580540-64580559 | Msa0564100:CDS | 45.0% | |
| TTCAGCACCTAAAGCGGTTA+GGG | + | chr4_1:64580550-64580569 | None:intergenic | 45.0% | |
| TACTGAACGTGCTCTTGACT+GGG | - | chr4_1:64580689-64580708 | Msa0564100:CDS | 45.0% | |
| CCATCGTCAACAATCAAGTC+AGG | + | chr4_1:64580729-64580748 | None:intergenic | 45.0% | |
| ! | CCTGACTTGATTGTTGACGA+TGG | - | chr4_1:64580726-64580745 | Msa0564100:CDS | 45.0% |
| GACTTGATTGTTGACGATGG+TGG | - | chr4_1:64580729-64580748 | Msa0564100:CDS | 45.0% | |
| CTTCAGCCTTAACACCTTCA+TGG | + | chr4_1:64580773-64580792 | None:intergenic | 45.0% | |
| GGTTGAAGACTGATCCTAAG+AGG | - | chr4_1:64580880-64580899 | Msa0564100:CDS | 45.0% | |
| GTGTTCGAATGATGCAGCTA+TGG | - | chr4_1:64581371-64581390 | Msa0564100:intron | 45.0% | |
| !! | TCCTGGATTTTGGTGTACAG+TGG | - | chr4_1:64581575-64581594 | Msa0564100:intron | 45.0% |
| ACCACTGTACACCAAAATCC+AGG | + | chr4_1:64581579-64581598 | None:intergenic | 45.0% | |
| ACTTCCCGATGGTTTGATGA+GGG | - | chr4_1:64581683-64581702 | Msa0564100:intron | 45.0% | |
| AGTAGCCCTCATCAAACCAT+CGG | + | chr4_1:64581691-64581710 | None:intergenic | 45.0% | |
| GTCTGTGGATATGGAGATGT+TGG | - | chr4_1:64581741-64581760 | Msa0564100:intron | 45.0% | |
| CATCATCAAGAGTCAGAACC+TGG | + | chr4_1:64581863-64581882 | None:intergenic | 45.0% | |
| GACATCTTTGTTACCACCAC+CGG | - | chr4_1:64581897-64581916 | Msa0564100:CDS | 45.0% | |
| CGGTAACAAGGACATCATCA+TGG | - | chr4_1:64581917-64581936 | Msa0564100:CDS | 45.0% | |
| TCATCATGGTTGACGACATG+AGG | - | chr4_1:64581931-64581950 | Msa0564100:CDS | 45.0% | |
| CAAGTTCATCAAACGACCCT+CGG | + | chr4_1:64582117-64582136 | None:intergenic | 45.0% | |
| GAGGGTCGTTTGATGAACTT+GGG | - | chr4_1:64582116-64582135 | Msa0564100:CDS | 45.0% | |
| ! | ATGAACTTGGGTTGTGCTAC+TGG | - | chr4_1:64582128-64582147 | Msa0564100:CDS | 45.0% |
| GAGCAGGACATCACAAAACT+AGG | + | chr4_1:64582158-64582177 | None:intergenic | 45.0% | |
| ! | TCATTGCTCAGCTTGAGTTG+TGG | - | chr4_1:64582192-64582211 | Msa0564100:CDS | 45.0% |
| ! | AGCTTGAGTTGTGGAATGAG+AGG | - | chr4_1:64582201-64582220 | Msa0564100:CDS | 45.0% |
| GCCTAAGCATCTTGATGAGA+AGG | - | chr4_1:64582259-64582278 | Msa0564100:CDS | 45.0% | |
| TTACATCAGTGTGCCAGTTG+AGG | - | chr4_1:64582346-64582365 | Msa0564100:CDS | 45.0% | |
| TACATCAGTGTGCCAGTTGA+GGG | - | chr4_1:64582347-64582366 | Msa0564100:CDS | 45.0% | |
| TCTCAATACCTGTAGTGAGC+GGG | + | chr4_1:64582383-64582402 | None:intergenic | 45.0% | |
| CTCTCAATACCTGTAGTGAG+CGG | + | chr4_1:64582384-64582403 | None:intergenic | 45.0% | |
| TGTTAACAGTGGATGGGGAA+TGG | - | chr4_1:64582525-64582544 | Msa0564100:CDS | 45.0% | |
| GTAAGAGGAAGGCAACCTAT+TGG | - | chr4_1:64582547-64582566 | Msa0564100:CDS | 45.0% | |
| TGACACACAATCCCCAAACA+AGG | + | chr4_1:64582609-64582628 | None:intergenic | 45.0% | |
| CTGTTTCGCTGTAGACCAAA+TGG | - | chr4_1:64582746-64582765 | Msa0564100:five_prime_UTR | 45.0% | |
| TGTACTGGACCGGACTTGAT+CGG | + | chr4_1:64580174-64580193 | None:intergenic | 50.0% | |
| GGAGTGGAATTGTACTGGAC+CGG | + | chr4_1:64580184-64580203 | None:intergenic | 50.0% | |
| GAGAGAGTGAGGATGAGAGT+GGG | + | chr4_1:64580237-64580256 | None:intergenic | 50.0% | |
| AGAGAGAGTGAGGATGAGAG+TGG | + | chr4_1:64580238-64580257 | None:intergenic | 50.0% | |
| TGAGAGGTGAAGAGAGAGTG+AGG | + | chr4_1:64580248-64580267 | None:intergenic | 50.0% | |
| CTTGTATTCACGGCCAGCTT+GGG | + | chr4_1:64580355-64580374 | None:intergenic | 50.0% | |
| CTGGCCGTGAATACAAGGTT+AGG | - | chr4_1:64580358-64580377 | Msa0564100:three_prime_UTR | 50.0% | |
| ATGTCCTGCCGAACTGAGTT+CGG | - | chr4_1:64580447-64580466 | Msa0564100:three_prime_UTR | 50.0% | |
| ! | TCTGGCTCCTTTGAAGGGTT+GGG | + | chr4_1:64580478-64580497 | None:intergenic | 50.0% |
| !! | TTCTGGCTCCTTTGAAGGGT+TGG | + | chr4_1:64580479-64580498 | None:intergenic | 50.0% |
| !! | GGTGATTCTGGCTCCTTTGA+AGG | + | chr4_1:64580484-64580503 | None:intergenic | 50.0% |
| GTGAAGAGATCCGGTGATTC+TGG | + | chr4_1:64580496-64580515 | None:intergenic | 50.0% | |
| GGTTAGGGTTTCGATGAGGA+CGG | + | chr4_1:64580535-64580554 | None:intergenic | 50.0% | |
| AAGCGGTTAGGGTTTCGATG+AGG | + | chr4_1:64580539-64580558 | None:intergenic | 50.0% | |
| CTTCAGCACCTAAAGCGGTT+AGG | + | chr4_1:64580551-64580570 | None:intergenic | 50.0% | |
| ACGGACTTCAGCACCTAAAG+CGG | + | chr4_1:64580556-64580575 | None:intergenic | 50.0% | |
| !! | CTTTAGGTGCTGAAGTCCGT+TGG | - | chr4_1:64580556-64580575 | Msa0564100:CDS | 50.0% |
| TTGAAGAGTCTCACCCTTCC+AGG | + | chr4_1:64580655-64580674 | None:intergenic | 50.0% | |
| GTACTGAACGTGCTCTTGAC+TGG | - | chr4_1:64580688-64580707 | Msa0564100:CDS | 50.0% | |
| ACTGAACGTGCTCTTGACTG+GGG | - | chr4_1:64580690-64580709 | Msa0564100:CDS | 50.0% | |
| CGACTCTGTTACCAAGAGCA+AGG | - | chr4_1:64581019-64581038 | Msa0564100:CDS | 50.0% | |
| AACCATCGGGAAGTGAGTGA+CGG | + | chr4_1:64581677-64581696 | None:intergenic | 50.0% | |
| CACTTCCCGATGGTTTGATG+AGG | - | chr4_1:64581682-64581701 | Msa0564100:intron | 50.0% | |
| GTAGCCCTCATCAAACCATC+GGG | + | chr4_1:64581690-64581709 | None:intergenic | 50.0% | |
| ! | GTGGGTGTTGTCTGTGGATA+TGG | - | chr4_1:64581732-64581751 | Msa0564100:intron | 50.0% |
| TGATCCAATCTGTGCCCTTC+AGG | - | chr4_1:64581821-64581840 | Msa0564100:intron | 50.0% | |
| ACCTTCCATGAGAGCCTGAA+GGG | + | chr4_1:64581838-64581857 | None:intergenic | 50.0% | |
| AACCTTCCATGAGAGCCTGA+AGG | + | chr4_1:64581839-64581858 | None:intergenic | 50.0% | |
| TGTTACCACCACCGGTAACA+AGG | - | chr4_1:64581905-64581924 | Msa0564100:CDS | 50.0% | |
| GATGATGTCCTTGTTACCGG+TGG | + | chr4_1:64581916-64581935 | None:intergenic | 50.0% | |
| TCTGGACTTGAGAACTACCC+TGG | - | chr4_1:64582014-64582033 | Msa0564100:CDS | 50.0% | |
| !! | AAAACCCACCTGTCGGTTTG+AGG | + | chr4_1:64582062-64582081 | None:intergenic | 50.0% |
| ! | GTTTTCCCTGAGACCAACAC+CGG | - | chr4_1:64582077-64582096 | Msa0564100:CDS | 50.0% |
| CAAGACAATGATGCCGGTGT+TGG | + | chr4_1:64582093-64582112 | None:intergenic | 50.0% | |
| CAACACCGGCATCATTGTCT+TGG | - | chr4_1:64582091-64582110 | Msa0564100:CDS | 50.0% | |
| CGAGGGTCGTTTGATGAACT+TGG | - | chr4_1:64582115-64582134 | Msa0564100:CDS | 50.0% | |
| !! | AGCAATGACCTGGTTGGTGA+AGG | + | chr4_1:64582180-64582199 | None:intergenic | 50.0% |
| AAGCTGAGCAATGACCTGGT+TGG | + | chr4_1:64582186-64582205 | None:intergenic | 50.0% | |
| ACTCAAGCTGAGCAATGACC+TGG | + | chr4_1:64582190-64582209 | None:intergenic | 50.0% | |
| AAGGTGGCTGCACTTCATCT+TGG | - | chr4_1:64582278-64582297 | Msa0564100:CDS | 50.0% | |
| GCACTTCATCTTGGCAAGCT+TGG | - | chr4_1:64582287-64582306 | Msa0564100:CDS | 50.0% | |
| CACCAAGCTTTCCCAATCAC+AGG | - | chr4_1:64582319-64582338 | Msa0564100:CDS | 50.0% | |
| AGCCTGTGATTGGGAAAGCT+TGG | + | chr4_1:64582324-64582343 | None:intergenic | 50.0% | |
| TGAGAGATGATGAGAGGTCG+AGG | - | chr4_1:64582398-64582417 | Msa0564100:CDS | 50.0% | |
| GAGAGATGATGAGAGGTCGA+GGG | - | chr4_1:64582399-64582418 | Msa0564100:CDS | 50.0% | |
| AGTGGATGGGGAATGGTAAG+AGG | - | chr4_1:64582532-64582551 | Msa0564100:CDS | 50.0% | |
| GATGGGGAATGGTAAGAGGA+AGG | - | chr4_1:64582536-64582555 | Msa0564100:CDS | 50.0% | |
| GTACTGGACCGGACTTGATC+GGG | + | chr4_1:64580173-64580192 | None:intergenic | 55.0% | |
| ! | GAGAGAGAAGGGAGTGTGAG+AGG | + | chr4_1:64580264-64580283 | None:intergenic | 55.0% |
| CCTTGTATTCACGGCCAGCT+TGG | + | chr4_1:64580356-64580375 | None:intergenic | 55.0% | |
| CCAAGCTGGCCGTGAATACA+AGG | - | chr4_1:64580353-64580372 | Msa0564100:three_prime_UTR | 55.0% | |
| GAGTCGGCCGAAATCAGCTT+GGG | + | chr4_1:64580391-64580410 | None:intergenic | 55.0% | |
| TTGGCCGAAATCGAGATGCC+CGG | - | chr4_1:64580420-64580439 | Msa0564100:three_prime_UTR | 55.0% | |
| GAGTCCGGGCATCTCGATTT+CGG | + | chr4_1:64580427-64580446 | None:intergenic | 55.0% | |
| AGTTCGGCAGGACATGAGTC+CGG | + | chr4_1:64580442-64580461 | None:intergenic | 55.0% | |
| GGGATGGTCCGAACTCAGTT+CGG | + | chr4_1:64580458-64580477 | None:intergenic | 55.0% | |
| GGACCATCCCAACCCTTCAA+AGG | - | chr4_1:64580468-64580487 | Msa0564100:three_prime_UTR | 55.0% | |
| ! | GCTCCTTTGAAGGGTTGGGA+TGG | + | chr4_1:64580474-64580493 | None:intergenic | 55.0% |
| TTTCGATGAGGACGGCGGTT+TGG | + | chr4_1:64580527-64580546 | None:intergenic | 55.0% | |
| TAGGGTTTCGATGAGGACGG+CGG | + | chr4_1:64580532-64580551 | None:intergenic | 55.0% | |
| ATCAAGTCAGGACCACCACC+TGG | + | chr4_1:64580717-64580736 | None:intergenic | 55.0% | |
| ! | GGAAAGGTGGGTGTTGTCTG+TGG | - | chr4_1:64581726-64581745 | Msa0564100:intron | 55.0% |
| GCTGTTGCCTTGAAGCAAGC+TGG | - | chr4_1:64581774-64581793 | Msa0564100:intron | 55.0% | |
| ! | ACGAGCTCCAGCTTGCTTCA+AGG | + | chr4_1:64581784-64581803 | None:intergenic | 55.0% |
| ! | AGAGCCTGAAGGGCACAGAT+TGG | + | chr4_1:64581828-64581847 | None:intergenic | 55.0% |
| GGCTCTCATGGAAGGTTTCC+AGG | - | chr4_1:64581842-64581861 | Msa0564100:intron | 55.0% | |
| GATGTCCTTGTTACCGGTGG+TGG | + | chr4_1:64581913-64581932 | None:intergenic | 55.0% | |
| !! | CCTGTCGGTTTGAGGCTTGA+TGG | + | chr4_1:64582054-64582073 | None:intergenic | 55.0% |
| CCATCAAGCCTCAAACCGAC+AGG | - | chr4_1:64582051-64582070 | Msa0564100:CDS | 55.0% | |
| TCAAGCCTCAAACCGACAGG+TGG | - | chr4_1:64582054-64582073 | Msa0564100:CDS | 55.0% | |
| CAAGCCTCAAACCGACAGGT+GGG | - | chr4_1:64582055-64582074 | Msa0564100:CDS | 55.0% | |
| CTCAGGGAAAACCCACCTGT+CGG | + | chr4_1:64582069-64582088 | None:intergenic | 55.0% | |
| !! | TGATGCCGGTGTTGGTCTCA+GGG | + | chr4_1:64582085-64582104 | None:intergenic | 55.0% |
| !! | ATGATGCCGGTGTTGGTCTC+AGG | + | chr4_1:64582086-64582105 | None:intergenic | 55.0% |
| CTCGGCCAAGACAATGATGC+CGG | + | chr4_1:64582099-64582118 | None:intergenic | 55.0% | |
| GGCATCATTGTCTTGGCCGA+GGG | - | chr4_1:64582098-64582117 | Msa0564100:CDS | 55.0% | |
| GGCTTGTATGGACCCTCAAC+TGG | + | chr4_1:64582362-64582381 | None:intergenic | 55.0% | |
| ! | CTGTAGTGAGCGGGCTTGTA+TGG | + | chr4_1:64582374-64582393 | None:intergenic | 55.0% |
| CATACAAGCCCGCTCACTAC+AGG | - | chr4_1:64582372-64582391 | Msa0564100:CDS | 55.0% | |
| CGAGTCGGCCGAAATCAGCT+TGG | + | chr4_1:64580392-64580411 | None:intergenic | 60.0% | |
| CGGCCAACTCGATCTCGAGT+CGG | + | chr4_1:64580407-64580426 | None:intergenic | 60.0% | |
| GTTCGGCAGGACATGAGTCC+GGG | + | chr4_1:64580441-64580460 | None:intergenic | 60.0% | |
| TGGTCCGAACTCAGTTCGGC+AGG | + | chr4_1:64580454-64580473 | None:intergenic | 60.0% | |
| ! | GATGAGGACGGCGGTTTGGA+TGG | + | chr4_1:64580523-64580542 | None:intergenic | 60.0% |
| CTCACCCTTCCAGGCGAAGA+CGG | + | chr4_1:64580646-64580665 | None:intergenic | 60.0% | |
| TGCCGTCACTCACTTCCCGA+TGG | - | chr4_1:64581672-64581691 | Msa0564100:intron | 60.0% | |
| CTGTGCCCTTCAGGCTCTCA+TGG | - | chr4_1:64581830-64581849 | Msa0564100:intron | 60.0% | |
| GCCCTTCAGGCTCTCATGGA+AGG | - | chr4_1:64581834-64581853 | Msa0564100:intron | 60.0% | |
| ! | TGGTGACGCGCTTCACACCA+GGG | + | chr4_1:64582034-64582053 | None:intergenic | 60.0% |
| ! | ATGGTGACGCGCTTCACACC+AGG | + | chr4_1:64582035-64582054 | None:intergenic | 60.0% |
| CGGCATCATTGTCTTGGCCG+AGG | - | chr4_1:64582097-64582116 | Msa0564100:CDS | 60.0% | |
| GTCCTGCTCCTTCACCAACC+AGG | - | chr4_1:64582169-64582188 | Msa0564100:CDS | 60.0% | |
| !! | GACCTGGTTGGTGAAGGAGC+AGG | + | chr4_1:64582174-64582193 | None:intergenic | 60.0% |
| !! | CGGCCGACTCGAGATCGAGT+TGG | - | chr4_1:64580401-64580420 | Msa0564100:three_prime_UTR | 65.0% |
| ACCCTTCCAGGCGAAGACGG+CGG | + | chr4_1:64580643-64580662 | None:intergenic | 65.0% | |
| CGTGCTCTTGACTGGGGTCC+AGG | - | chr4_1:64580696-64580715 | Msa0564100:CDS | 65.0% | |
| GCTCTTGACTGGGGTCCAGG+TGG | - | chr4_1:64580699-64580718 | Msa0564100:CDS | 65.0% | |
| CTTGACTGGGGTCCAGGTGG+TGG | - | chr4_1:64580702-64580721 | Msa0564100:CDS | 65.0% | |
| ! | GCTGTCACGAGCGATGGCGG+CGG | + | chr4_1:64580619-64580638 | None:intergenic | 70.0% |
| GGCGCTGTCACGAGCGATGG+CGG | + | chr4_1:64580622-64580641 | None:intergenic | 70.0% | |
| GCCGCCGTCTTCGCCTGGAA+GGG | - | chr4_1:64580639-64580658 | Msa0564100:CDS | 70.0% | |
| ! | GTCACGAGCGATGGCGGCGG+CGG | + | chr4_1:64580616-64580635 | None:intergenic | 75.0% |
| GGCGGCGCTGTCACGAGCGA+TGG | + | chr4_1:64580625-64580644 | None:intergenic | 75.0% | |
| ACAGCGCCGCCGTCTTCGCC+TGG | - | chr4_1:64580634-64580653 | Msa0564100:CDS | 75.0% | |
| CGCCGCCGTCTTCGCCTGGA+AGG | - | chr4_1:64580638-64580657 | Msa0564100:CDS | 75.0% | |
| !! | GAGCGATGGCGGCGGCGGCG+TGG | + | chr4_1:64580611-64580630 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64580126 | 64582780 | 64580126 | ID=Msa0564100;Name=Msa0564100 |
| chr4_1 | mRNA | 64580126 | 64582780 | 64580126 | ID=Msa0564100-mRNA-1;Parent=Msa0564100;Name=Msa0564100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=204|1|1|1|1|1|2|380|485 |
| chr4_1 | exon | 64580126 | 64581252 | 64580126 | ID=Msa0564100-mRNA-1:exon:20671;Parent=Msa0564100-mRNA-1 |
| chr4_1 | exon | 64581866 | 64582780 | 64581866 | ID=Msa0564100-mRNA-1:exon:20670;Parent=Msa0564100-mRNA-1 |
| chr4_1 | five_prime_UTR | 64582577 | 64582780 | 64582577 | ID=Msa0564100-mRNA-1:five_prime_utr;Parent=Msa0564100-mRNA-1 |
| chr4_1 | CDS | 64581866 | 64582576 | 64581866 | ID=Msa0564100-mRNA-1:cds;Parent=Msa0564100-mRNA-1 |
| chr4_1 | CDS | 64580506 | 64581252 | 64580506 | ID=Msa0564100-mRNA-1:cds;Parent=Msa0564100-mRNA-1 |
| chr4_1 | three_prime_UTR | 64580126 | 64580505 | 64580126 | ID=Msa0564100-mRNA-1:three_prime_utr;Parent=Msa0564100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
