AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564370 MtrunA17_Chr8g0378511 99.314 437 3 0 1 437 1 437 0.0 900
Msa0564370 MtrunA17_Chr4g0063531 74.057 424 107 2 17 437 5 428 0.0 669
Msa0564370 MtrunA17_Chr3g0115401 27.968 379 188 12 75 377 41 410 3.12e-36 139
Msa0564370 MtrunA17_Chr2g0285851 28.834 326 214 9 77 391 52 370 5.40e-36 137
Msa0564370 MtrunA17_Chr2g0278921 27.982 436 235 15 77 436 43 475 3.12e-34 133
Msa0564370 MtrunA17_Chr8g0348991 28.797 316 211 8 76 385 24 331 5.75e-31 122
Msa0564370 MtrunA17_Chr8g0377241 30.072 276 179 7 77 344 51 320 1.24e-30 121
Msa0564370 MtrunA17_Chr3g0122681 28.159 277 183 8 76 343 34 303 2.73e-28 115
Msa0564370 MtrunA17_Chr2g0326541 30.584 291 182 11 65 346 8 287 7.71e-27 110
Msa0564370 MtrunA17_Chr7g0225551 27.076 277 182 9 81 346 59 326 5.77e-23 100
Msa0564370 MtrunA17_Chr8g0378571 29.515 227 139 7 77 285 7 230 2.96e-22 97.4
Msa0564370 MtrunA17_Chr3g0121371 67.742 62 20 0 56 117 6 67 3.94e-22 89.4
Msa0564370 MtrunA17_Chr3g0129221 26.974 304 198 9 77 374 9 294 5.92e-22 96.7
Msa0564370 MtrunA17_Chr7g0260051 30.769 195 121 5 77 261 4 194 2.75e-21 94.7
Msa0564370 MtrunA17_Chr3g0138981 25.597 293 194 9 65 351 5 279 3.97e-20 91.3
Msa0564370 MtrunA17_Chr6g0459491 24.274 379 238 14 78 437 57 405 1.34e-18 87.4
Msa0564370 MtrunA17_Chr3g0121361 51.724 87 24 1 351 437 13 81 1.92e-18 79.7
Msa0564370 MtrunA17_Chr4g0011151 25.993 277 176 10 84 343 109 373 8.17e-16 79.3
Msa0564370 MtrunA17_Chr5g0416461 26.408 284 181 9 77 343 129 401 2.08e-15 78.2
Msa0564370 MtrunA17_Chr4g0011221 25.632 277 177 10 84 343 109 373 2.84e-15 77.4
Msa0564370 MtrunA17_Chr4g0010131 27.273 231 153 7 84 309 78 298 5.09e-15 76.6
Msa0564370 MtrunA17_Chr4g0011171 25.271 277 178 10 84 343 109 373 5.78e-15 76.6
Msa0564370 MtrunA17_Chr4g0011161 25.271 277 178 10 84 343 109 373 7.85e-15 76.3
Msa0564370 MtrunA17_Chr8g0362081 25.532 282 182 9 79 343 152 422 9.92e-15 76.3
Msa0564370 MtrunA17_Chr4g0011191 27.000 200 133 4 84 281 109 297 1.36e-14 74.3
Msa0564370 MtrunA17_Chr2g0332031 26.056 284 175 11 77 334 3 277 1.81e-13 71.6
Msa0564370 MtrunA17_Chr5g0409091 26.629 353 209 17 77 403 41 369 2.85e-13 70.9
Msa0564370 MtrunA17_Chr4g0010161 24.194 248 175 7 62 305 53 291 4.94e-13 70.5
Msa0564370 MtrunA17_Chr4g0060541 24.893 233 162 7 77 305 31 254 5.27e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564370 AT1G55270.1 76.977 430 95 2 8 437 9 434 0.0 704
Msa0564370 AT1G55270.2 74.679 312 75 2 126 437 1 308 3.73e-178 500
Msa0564370 AT1G22040.1 28.082 438 231 12 77 436 43 474 3.28e-35 136
Msa0564370 AT1G67480.3 29.595 321 206 10 66 377 28 337 5.18e-34 131
Msa0564370 AT1G67480.1 29.595 321 206 10 66 377 28 337 5.18e-34 131
Msa0564370 AT1G67480.2 29.595 321 206 10 66 377 28 337 5.18e-34 131
Msa0564370 AT1G30090.1 29.352 293 192 7 63 344 39 327 2.36e-32 127
Msa0564370 AT3G61350.2 26.211 351 224 13 69 401 13 346 8.97e-31 122
Msa0564370 AT3G61350.1 26.211 351 224 13 69 401 13 346 8.97e-31 122
Msa0564370 AT1G27420.1 28.058 278 183 6 76 343 9 279 3.89e-26 108
Msa0564370 AT2G24540.1 24.437 311 208 9 57 352 9 307 1.32e-25 107
Msa0564370 AT3G27150.2 28.479 309 200 10 78 374 71 370 9.32e-24 103
Msa0564370 AT3G27150.1 28.479 309 200 10 78 374 71 370 9.32e-24 103
Msa0564370 AT5G60570.2 28.214 280 175 11 77 344 49 314 6.60e-19 88.6
Msa0564370 AT5G60570.1 28.214 280 175 11 77 344 49 314 6.60e-19 88.6
Msa0564370 AT5G60570.3 28.214 280 175 11 77 344 49 314 6.60e-19 88.6
Msa0564370 AT1G16250.2 25.610 246 167 5 73 305 4 246 7.77e-18 85.1
Msa0564370 AT1G16250.1 25.610 246 167 5 73 305 4 246 7.77e-18 85.1
Msa0564370 AT1G80440.1 26.962 293 182 12 77 345 3 287 1.74e-17 84.0
Msa0564370 AT1G26930.1 27.083 288 181 9 77 345 71 348 3.50e-17 83.6
Msa0564370 AT3G63220.1 28.351 194 127 4 77 261 4 194 1.24e-16 81.3
Msa0564370 AT3G63220.3 28.351 194 127 4 77 261 11 201 1.34e-16 81.3
Msa0564370 AT3G63220.2 28.351 194 127 4 77 261 11 201 1.34e-16 81.3
Msa0564370 AT2G02870.2 25.641 312 190 12 53 343 101 391 1.99e-16 81.6
Msa0564370 AT2G02870.3 25.641 312 190 12 53 343 101 391 1.99e-16 81.6
Msa0564370 AT2G02870.1 25.641 312 190 12 53 343 101 391 1.99e-16 81.6
Msa0564370 AT1G15670.1 25.753 299 183 11 77 345 3 292 5.63e-16 79.3
Msa0564370 AT3G43710.1 29.949 197 132 4 66 259 14 207 2.36e-15 77.8
Msa0564370 AT3G46050.1 28.302 265 167 10 63 314 3 257 3.14e-15 77.4
Msa0564370 AT1G14330.1 25.325 308 190 11 53 343 80 364 4.61e-15 77.4
Msa0564370 AT1G60570.1 29.327 208 133 5 52 255 1 198 5.29e-15 76.6
Msa0564370 AT4G39290.1 30.601 183 120 4 81 258 16 196 9.62e-15 75.9
Msa0564370 AT4G23580.1 26.908 249 157 7 81 311 19 260 2.06e-14 75.1
Msa0564370 AT4G35120.1 28.502 207 120 7 64 255 10 203 5.14e-14 73.9
Msa0564370 AT4G33900.1 31.472 197 110 8 81 258 15 205 6.93e-14 73.2
Msa0564370 AT1G26930.2 25.781 256 153 8 77 311 71 310 1.27e-13 72.4
Msa0564370 AT1G74510.2 27.350 234 147 9 81 305 99 318 3.43e-13 71.6
Msa0564370 AT1G74510.1 27.350 234 147 9 81 305 99 318 3.43e-13 71.6
Msa0564370 AT1G74510.3 27.350 234 147 9 81 305 99 318 3.43e-13 71.6
Msa0564370 AT5G02980.1 28.788 198 113 7 69 255 3 183 5.61e-13 70.1
Msa0564370 AT5G03000.1 27.234 235 158 6 63 288 25 255 1.32e-12 69.3
Msa0564370 AT2G29770.1 24.839 310 184 10 63 345 18 305 1.52e-12 69.3
Msa0564370 AT2G21950.1 23.853 327 223 10 60 374 3 315 2.07e-12 68.9
Msa0564370 AT1G31350.1 21.591 352 227 13 77 394 35 371 9.27e-12 67.0
Msa0564370 AT5G26960.1 29.536 237 137 10 78 298 44 266 1.10e-11 66.6
Msa0564370 AT1G31350.2 21.591 352 227 13 77 394 71 407 1.40e-11 66.6
Msa0564370 AT4G34170.1 29.775 178 103 6 81 258 15 170 1.57e-11 65.5
Msa0564370 AT1G19460.1 21.713 327 205 13 81 379 58 361 2.07e-11 65.9

Find 135 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTCTTGTTTCACTTAA+TGG 0.101203 4_1:+65011599 Msa0564370:CDS
CAATCCCTCCCGCCTGTTCC+TGG 0.147139 4_1:+65010978 Msa0564370:CDS
ATTAGTTACAATATATATTT+AGG 0.190955 4_1:+65012017 Msa0564370:three_prime_UTR
GGTCTTTAGTTAGGAATTTA+TGG 0.197065 4_1:+65011741 Msa0564370:CDS
GTAAATGTTGTTTCGCTCTA+AGG 0.225400 4_1:+65011980 Msa0564370:three_prime_UTR
GCGGGAGGGATTGCCATATT+TGG 0.244284 4_1:-65010968 None:intergenic
CACAAGTTCTCTAATAATAT+TGG 0.272304 4_1:+65011839 Msa0564370:three_prime_UTR
TTGACCCTATCTACCAAATA+TGG 0.280582 4_1:+65010955 Msa0564370:CDS
TTTATTGGTGTTATTCATAA+TGG 0.293556 4_1:+65011317 Msa0564370:CDS
ACGACCATTCCATTGTTTAC+TGG 0.294115 4_1:-65011419 None:intergenic
TTATTTATATTTCAGTTAGT+AGG 0.303650 4_1:+65012117 Msa0564370:three_prime_UTR
ACAACGCGCGTACAAATAAA+TGG 0.315611 4_1:+65011111 Msa0564370:CDS
TATTCTGAAGCATTGGGATT+TGG 0.319911 4_1:+65011005 Msa0564370:CDS
TGTGCATTCGGGTTTATATC+AGG 0.324598 4_1:-65010675 None:intergenic
TTATGAATAACACCAATAAA+AGG 0.331081 4_1:-65011314 None:intergenic
AGCTCCATCTGTTCCGATTA+GGG 0.347050 4_1:-65011262 None:intergenic
AATCCCTCCCGCCTGTTCCT+GGG 0.349626 4_1:+65010979 Msa0564370:CDS
AAGCTCCATCTGTTCCGATT+AGG 0.349975 4_1:-65011263 None:intergenic
GATTGCCATATTTGGTAGAT+AGG 0.357958 4_1:-65010960 None:intergenic
ACATTATAATGCTCCCTATT+CGG 0.367043 4_1:-65011959 None:intergenic
CACCTCTGGGAAAATATTGC+TGG 0.367840 4_1:+65011704 Msa0564370:CDS
GTTATCACAGTTGTATCTTT+AGG 0.368537 4_1:+65012089 Msa0564370:three_prime_UTR
TGCTATTGTAAAGTAGATTC+AGG 0.375567 4_1:+65010594 Msa0564370:CDS
TAAACTCAAAGTCTATGATA+TGG 0.375642 4_1:+65011508 Msa0564370:CDS
ATGACGTTTCCGCAGCATAT+CGG 0.378022 4_1:-65011144 None:intergenic
TACATATTTAGTCTTCAAAC+TGG 0.393188 4_1:-65012181 None:intergenic
ATCGATAGCAGGCTTCATTT+AGG 0.397595 4_1:+65011554 Msa0564370:CDS
TATTTATATTTCAGTTAGTA+GGG 0.403692 4_1:+65012118 Msa0564370:three_prime_UTR
GGTTGCCACTTGTACTTGTT+TGG 0.403994 4_1:+65011044 Msa0564370:CDS
ATGATATGGCGACGGATTCA+TGG 0.409397 4_1:+65011522 Msa0564370:CDS
CACTGTCATGAATACCGAAT+AGG 0.409989 4_1:+65011945 Msa0564370:three_prime_UTR
AATCCAAGTATCTCACTTAA+CGG 0.412505 4_1:+65011452 Msa0564370:CDS
CTGAGGTTTACGACCCTAAT+CGG 0.421824 4_1:+65011249 Msa0564370:CDS
AGATGGTATCGCCTTCTGTC+TGG 0.422115 4_1:+65010834 Msa0564370:CDS
TCCATTGTTTACTGGAGTCC+AGG 0.429205 4_1:-65011411 None:intergenic
GGGGCGAGGAAGTTTGTTCC+AGG 0.432644 4_1:+65010633 Msa0564370:CDS
AATAACTGCCTCTATGTTGC+TGG 0.434024 4_1:+65011188 Msa0564370:CDS
TTGAAAACAATCCTCACCTC+TGG 0.437794 4_1:+65011690 Msa0564370:CDS
TCTTGGAATGGCAGAAGAAT+GGG 0.438690 4_1:+65010884 Msa0564370:CDS
GTCTTGGAATGGCAGAAGAA+TGG 0.439174 4_1:+65010883 Msa0564370:CDS
GGGGAATATTCTGAAGCATT+GGG 0.439296 4_1:+65010999 Msa0564370:CDS
TGACGTTTCCGCAGCATATC+GGG 0.442333 4_1:-65011143 None:intergenic
GTTCAGCCTCCTTTGCTACC+TGG 0.446688 4_1:+65010732 Msa0564370:CDS
TCAGAATATTCCCCAGGAAC+AGG 0.449230 4_1:-65010990 None:intergenic
GAACTTGTGGATCTCATCTC+AGG 0.450722 4_1:-65011825 None:intergenic
TCAGGCCTGAAAACAGTAGC+TGG 0.451037 4_1:+65010612 Msa0564370:CDS
ACTGTCATGAATACCGAATA+GGG 0.451325 4_1:+65011946 Msa0564370:three_prime_UTR
CTTTGAGTTTACAGCCGTCT+TGG 0.451770 4_1:-65011496 None:intergenic
CAAGCAATAGCAAGATCATC+AGG 0.451957 4_1:-65010759 None:intergenic
TTTGGCTGTGCCGTTCTTAG+TGG 0.453925 4_1:+65011023 Msa0564370:CDS
TGAACATAGGAAACTGCGTT+TGG 0.455533 4_1:+65010803 Msa0564370:CDS
GTCCTGTCAGGTCTTTAGTT+AGG 0.455869 4_1:+65011732 Msa0564370:CDS
TATTCGCTCCGGAAAAGTCT+TGG 0.457791 4_1:+65010867 Msa0564370:CDS
TGGGGAATATTCTGAAGCAT+TGG 0.458628 4_1:+65010998 Msa0564370:CDS
CTGGGAAAATATTGCTGGAA+AGG 0.473920 4_1:+65011709 Msa0564370:CDS
TACACAGATAAGGAAATTGT+TGG 0.475395 4_1:+65011863 Msa0564370:three_prime_UTR
CTCTAGAGTTCAAGCTCCAC+TGG 0.479475 4_1:+65007710 Msa0564370:CDS
TGGATGCATATCTTTGATCC+TGG 0.484538 4_1:-65010651 None:intergenic
CAACAATATGAGCATCAGTC+TGG 0.486023 4_1:+65011640 Msa0564370:CDS
TGCGTTTGGTTTGCAAGAGA+TGG 0.486322 4_1:+65010817 Msa0564370:CDS
TCTCCGTTAAGTGAGATACT+TGG 0.486498 4_1:-65011455 None:intergenic
CAATACATGAACACATATGA+TGG 0.495083 4_1:-65012250 None:intergenic
GGAAGAAGTTTATCGATAGC+AGG 0.495335 4_1:+65011543 Msa0564370:CDS
ATCCCTCCCGCCTGTTCCTG+GGG 0.498984 4_1:+65010980 Msa0564370:CDS
TTTCAGTTAGTAGGGAGAAG+AGG 0.506450 4_1:+65012126 Msa0564370:three_prime_UTR
AAAGTTCTGCTAATTCTCAA+AGG 0.508122 4_1:+65007685 Msa0564370:CDS
TGCCACTTGTACTTGTTTGG+TGG 0.513695 4_1:+65011047 Msa0564370:CDS
CAGTTTCCTATGTTCAACTC+GGG 0.513705 4_1:-65010796 None:intergenic
AATTTATGGTCTACTATCGC+AGG 0.517084 4_1:+65011755 Msa0564370:CDS
TTGCTGGAAAGGGTCCTGTC+AGG 0.517356 4_1:+65011720 Msa0564370:CDS
AAGTTCTGCTAATTCTCAAA+GGG 0.522697 4_1:+65007686 Msa0564370:CDS
GGTATCGGATTCCTGTGAAT+AGG 0.523925 4_1:-65011390 None:intergenic
CATTCGGGTTTATATCAGGT+TGG 0.524469 4_1:-65010671 None:intergenic
CAATATTATTAGAGAACTTG+TGG 0.526053 4_1:-65011838 None:intergenic
TAATATTGGTTACACAGATA+AGG 0.527748 4_1:+65011853 Msa0564370:three_prime_UTR
AGTAAACAATGGAATGGTCG+TGG 0.529726 4_1:+65011421 Msa0564370:CDS
ATTCACAGGAATCCGATACC+TGG 0.530018 4_1:+65011393 Msa0564370:CDS
ATTGCCATATTTGGTAGATA+GGG 0.532627 4_1:-65010959 None:intergenic
GTTTACTGGAGTCCAGGTAT+CGG 0.532775 4_1:-65011405 None:intergenic
TGGTGGAAGAGATCCGTTGA+AGG 0.541573 4_1:+65011064 Msa0564370:CDS
CAGGCCTGAAAACAGTAGCT+GGG 0.543433 4_1:+65010613 Msa0564370:CDS
TGGGAAAATATTGCTGGAAA+GGG 0.544190 4_1:+65011710 Msa0564370:CDS
AAAAGAAATTTCCAGACAGA+AGG 0.548143 4_1:-65010845 None:intergenic
TCGGTATTCATGACAGTGAA+GGG 0.550587 4_1:-65011940 None:intergenic
GAACAGATGGAGCTTTATCT+CGG 0.551686 4_1:+65011271 Msa0564370:CDS
CTCGGAGATGACCACAGCTA+TGG 0.552147 4_1:+65011289 Msa0564370:CDS
TCAGGAAGACCAGGTAGCAA+AGG 0.554838 4_1:-65010741 None:intergenic
TTCCTAACTAAAGACCTGAC+AGG 0.558546 4_1:-65011734 None:intergenic
TGAAAACAGTAGCTGGGGCG+AGG 0.559188 4_1:+65010619 Msa0564370:CDS
CATATGTGAAGCCTATTCAC+AGG 0.559893 4_1:+65011379 Msa0564370:CDS
GGAAGACCAGGTAGCAAAGG+AGG 0.560707 4_1:-65010738 None:intergenic
TATGCACTTGATTGCCAAGA+CGG 0.568382 4_1:+65011482 Msa0564370:CDS
GCAAGATCATCAGGAAGACC+AGG 0.572772 4_1:-65010750 None:intergenic
AAGAACTCTTCGATCTGCTG+AGG 0.575958 4_1:+65011232 Msa0564370:CDS
TTCCACCAAACAAGTACAAG+TGG 0.579081 4_1:-65011049 None:intergenic
TGAAAACAATCCTCACCTCT+GGG 0.580142 4_1:+65011691 Msa0564370:CDS
GTGTACCCCGAGTTGAACAT+AGG 0.580144 4_1:+65010790 Msa0564370:CDS
CTGCCTCTATGTTGCTGGTG+GGG 0.582217 4_1:+65011193 Msa0564370:CDS
TTCGGTATTCATGACAGTGA+AGG 0.583488 4_1:-65011941 None:intergenic
GCAGTTTCCTATGTTCAACT+CGG 0.584524 4_1:-65010797 None:intergenic
AACTGCCTCTATGTTGCTGG+TGG 0.585089 4_1:+65011191 Msa0564370:CDS
AATATTCCCCAGGAACAGGC+GGG 0.587157 4_1:-65010986 None:intergenic
GGTGGAAGAGATCCGTTGAA+GGG 0.595602 4_1:+65011065 Msa0564370:CDS
ACGACCCTAATCGGAACAGA+TGG 0.598075 4_1:+65011258 Msa0564370:CDS
AATGCTTCAGAATATTCCCC+AGG 0.600246 4_1:-65010996 None:intergenic
GTGTTATTCATAATGGCACA+TGG 0.603825 4_1:+65011324 Msa0564370:CDS
TCATATACAACATCAATGCA+TGG 0.604043 4_1:-65012048 None:intergenic
ACTGCCTCTATGTTGCTGGT+GGG 0.605055 4_1:+65011192 Msa0564370:CDS
GACTCCAGTAAACAATGGAA+TGG 0.605106 4_1:+65011415 Msa0564370:CDS
TTCCCCAGGAACAGGCGGGA+GGG 0.606081 4_1:-65010982 None:intergenic
CGCCTCATAGATCCCTTCAA+CGG 0.606636 4_1:-65011077 None:intergenic
TGGTCTACTATCGCAGGGCG+CGG 0.607872 4_1:+65011761 Msa0564370:CDS
ATTCCCCACCAGCAACATAG+AGG 0.608916 4_1:-65011196 None:intergenic
GGATATCATATCCCATGTTG+TGG 0.611158 4_1:+65012147 Msa0564370:three_prime_UTR
GCTCCGGAAAAGTCTTGGAA+TGG 0.613465 4_1:+65010872 Msa0564370:CDS
ACAATGGAATGGTCGTGGGA+TGG 0.614216 4_1:+65011426 Msa0564370:CDS
ATTCCCCAGGAACAGGCGGG+AGG 0.614780 4_1:-65010983 None:intergenic
ATCCGTTGAAGGGATCTATG+AGG 0.615494 4_1:+65011075 Msa0564370:CDS
GAATATTCCCCAGGAACAGG+CGG 0.615952 4_1:-65010987 None:intergenic
CAAGTGGCAACCACTAAGAA+CGG 0.620531 4_1:-65011033 None:intergenic
TCTACTATCGCAGGGCGCGG+TGG 0.621549 4_1:+65011764 Msa0564370:CDS
ACCTGGACTCCAGTAAACAA+TGG 0.623432 4_1:+65011410 Msa0564370:CDS
GTAAACAATGGAATGGTCGT+GGG 0.628265 4_1:+65011422 Msa0564370:CDS
TGTTTCGCTCTAAGGCTCTG+TGG 0.630448 4_1:+65011988 Msa0564370:three_prime_UTR
GTTGCTGGTGGGGAATGTAA+AGG 0.635408 4_1:+65011203 Msa0564370:CDS
CAAAGTCTATGATATGGCGA+CGG 0.642307 4_1:+65011514 Msa0564370:CDS
ACAGAGCACCCGATATGCTG+CGG 0.651004 4_1:+65011135 Msa0564370:CDS
ATTTATGGTCTACTATCGCA+GGG 0.652108 4_1:+65011756 Msa0564370:CDS
AGGCCTGAAAACAGTAGCTG+GGG 0.656010 4_1:+65010614 Msa0564370:CDS
CGGTATTCATGACAGTGAAG+GGG 0.658347 4_1:-65011939 None:intergenic
TGTCATCAAAAGAGACCGTG+AGG 0.661494 4_1:+65010911 Msa0564370:CDS
AGTTTCCTATGTTCAACTCG+GGG 0.678256 4_1:-65010795 None:intergenic
GTCATCAAAAGAGACCGTGA+GGG 0.680560 4_1:+65010912 Msa0564370:CDS
ATATAAACCCGAATGCACAC+AGG 0.688244 4_1:+65010679 Msa0564370:CDS
AATAAAAGGAACCATAGCTG+TGG 0.696250 4_1:-65011300 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTATAAAAGAATAAA+GGG - chr4_1:65008798-65008817 None:intergenic 10.0%
!!! ATTTAATTTAATAAAACAAC+AGG - chr4_1:65010120-65010139 None:intergenic 10.0%
!! AATTTAATTAATAAAACAAC+AGG - chr4_1:65010268-65010287 None:intergenic 10.0%
!!! CTTGATAAAATAATATATTT+TGG + chr4_1:65010481-65010500 Msa0564370:intron 10.0%
!! ATTAGTTACAATATATATTT+AGG + chr4_1:65012017-65012036 Msa0564370:three_prime_UTR 10.0%
!! TGAAACTACAAAAAAAAAAA+TGG - chr4_1:65007828-65007847 None:intergenic 15.0%
!!! AAATCACTCTTTAAATTTTT+AGG + chr4_1:65007938-65007957 Msa0564370:intron 15.0%
!!! AATCACTCTTTAAATTTTTA+GGG + chr4_1:65007939-65007958 Msa0564370:intron 15.0%
!!! TTTTAGTATACATTATATGT+TGG + chr4_1:65007991-65008010 Msa0564370:intron 15.0%
!! TTTAGTATACATTATATGTT+GGG + chr4_1:65007992-65008011 Msa0564370:intron 15.0%
!! AGTATTATTAACATATAGTA+GGG - chr4_1:65008056-65008075 None:intergenic 15.0%
!! TAGTATTATTAACATATAGT+AGG - chr4_1:65008057-65008076 None:intergenic 15.0%
!!! CAAAAAGTATAAAAGAATAA+AGG - chr4_1:65008799-65008818 None:intergenic 15.0%
!!! TTTGAAATTTTTATACCAAT+GGG + chr4_1:65009198-65009217 Msa0564370:intron 15.0%
!! TTATTTATATTTCAGTTAGT+AGG + chr4_1:65012117-65012136 Msa0564370:three_prime_UTR 15.0%
!! TATTTATATTTCAGTTAGTA+GGG + chr4_1:65012118-65012137 Msa0564370:three_prime_UTR 15.0%
!! TAATGCATATTTGATTCATA+AGG - chr4_1:65008091-65008110 None:intergenic 20.0%
!! TAATTTAGAGACTAAATTCA+TGG - chr4_1:65008318-65008337 None:intergenic 20.0%
!!! ATATACTTTAAGGACTAAAT+TGG + chr4_1:65008454-65008473 Msa0564370:intron 20.0%
!!! ATATACTTTAAGGACTAAAT+TGG + chr4_1:65008454-65008473 Msa0564370:intron 20.0%
!!! ATTCTTTTATACTTTTTGTG+AGG + chr4_1:65008801-65008820 Msa0564370:intron 20.0%
!!! TTCTTTTATACTTTTTGTGA+GGG + chr4_1:65008802-65008821 Msa0564370:intron 20.0%
!!! GTTTGAAATTTTTATACCAA+TGG + chr4_1:65009197-65009216 Msa0564370:intron 20.0%
!! AAAATTATTACGTTCAAAGT+AGG - chr4_1:65009974-65009993 None:intergenic 20.0%
!!! ATATTTTGGTGCATATTATT+AGG + chr4_1:65010495-65010514 Msa0564370:intron 20.0%
!!! TATTTTGGTGCATATTATTA+GGG + chr4_1:65010496-65010515 Msa0564370:intron 20.0%
!! AAAGAATCAAAAAACCAAAA+AGG - chr4_1:65010525-65010544 None:intergenic 20.0%
!! TTCAACATATATATACTAAC+AGG + chr4_1:65010543-65010562 Msa0564370:intron 20.0%
!! TTATGAATAACACCAATAAA+AGG - chr4_1:65011317-65011336 None:intergenic 20.0%
!!! TTTATTGGTGTTATTCATAA+TGG + chr4_1:65011317-65011336 Msa0564370:CDS 20.0%
!!! TTTTGTAAAGATGAAGATTT+TGG + chr4_1:65011899-65011918 Msa0564370:three_prime_UTR 20.0%
! AAATGGAACAGTAAATCAAA+TGG - chr4_1:65007811-65007830 None:intergenic 25.0%
! GTGTATTTGTGTGTTTATTA+AGG + chr4_1:65007853-65007872 Msa0564370:intron 25.0%
!!! AATTTTTAGGGTTCTTTGTT+TGG + chr4_1:65007951-65007970 Msa0564370:intron 25.0%
!!! ATTTTTAGGGTTCTTTGTTT+GGG + chr4_1:65007952-65007971 Msa0564370:intron 25.0%
! ATTACTATCTATCAAACAGA+GGG - chr4_1:65008115-65008134 None:intergenic 25.0%
! TATTACTATCTATCAAACAG+AGG - chr4_1:65008116-65008135 None:intergenic 25.0%
!!! ACATAGTAGTTTGCTTATTT+TGG - chr4_1:65008139-65008158 None:intergenic 25.0%
! CTTGAACATCTTAATAAGAA+AGG + chr4_1:65008413-65008432 Msa0564370:intron 25.0%
! TTAATAAGAAAGGACTGAAT+TGG + chr4_1:65008423-65008442 Msa0564370:intron 25.0%
!!! TATTTTAGGGACTAAATTGA+TGG + chr4_1:65008488-65008507 Msa0564370:intron 25.0%
!!! TCTTTTATACTTTTTGTGAG+GGG + chr4_1:65008803-65008822 Msa0564370:intron 25.0%
! TTGCAGCAATTAAAGTAAAA+CGG + chr4_1:65010396-65010415 Msa0564370:intron 25.0%
! TAAACTCAAAGTCTATGATA+TGG + chr4_1:65011508-65011527 Msa0564370:CDS 25.0%
! CAATATTATTAGAGAACTTG+TGG - chr4_1:65011841-65011860 None:intergenic 25.0%
! CACAAGTTCTCTAATAATAT+TGG + chr4_1:65011839-65011858 Msa0564370:three_prime_UTR 25.0%
!! TAATATTGGTTACACAGATA+AGG + chr4_1:65011853-65011872 Msa0564370:three_prime_UTR 25.0%
!! TACATATTTAGTCTTCAAAC+TGG - chr4_1:65012184-65012203 None:intergenic 25.0%
TTTCAAAGGCTAGATTCAAA+AGG + chr4_1:65007571-65007590 Msa0564370:intron 30.0%
TTCAAAGGCTAGATTCAAAA+GGG + chr4_1:65007572-65007591 Msa0564370:intron 30.0%
TCAAAGCAAATTAAGCATCT+TGG - chr4_1:65007614-65007633 None:intergenic 30.0%
GCTAAATCTCGTTGAAAAAA+TGG - chr4_1:65007642-65007661 None:intergenic 30.0%
AAAGTTCTGCTAATTCTCAA+AGG + chr4_1:65007685-65007704 Msa0564370:CDS 30.0%
AAGTTCTGCTAATTCTCAAA+GGG + chr4_1:65007686-65007705 Msa0564370:CDS 30.0%
! GATTCAAATCGCATTTGTTT+TGG + chr4_1:65007744-65007763 Msa0564370:intron 30.0%
TCACAGCTTATATTCAACTT+AGG - chr4_1:65007901-65007920 None:intergenic 30.0%
AAGCTGTGATTTCAGTTAAA+TGG + chr4_1:65007912-65007931 Msa0564370:intron 30.0%
AGCTGTGATTTCAGTTAAAT+GGG + chr4_1:65007913-65007932 Msa0564370:intron 30.0%
!! GGCAGGTTTTATATACTTTA+AGG + chr4_1:65008444-65008463 Msa0564370:intron 30.0%
! TGGAGATAGAGTGATATTTT+AGG + chr4_1:65008474-65008493 Msa0564370:intron 30.0%
! GGAGATAGAGTGATATTTTA+GGG + chr4_1:65008475-65008494 Msa0564370:intron 30.0%
! GAAATTTTTATACCAATGGG+AGG + chr4_1:65009201-65009220 Msa0564370:intron 30.0%
GAATGTCAATATGCCAAAAA+GGG + chr4_1:65009237-65009256 Msa0564370:intron 30.0%
TTATGTCTCAACACTTCATT+AGG + chr4_1:65009330-65009349 Msa0564370:intron 30.0%
TCAACACTTCATTAGGATTT+AGG + chr4_1:65009337-65009356 Msa0564370:intron 30.0%
GTTCAAAAAGTCATACTACT+GGG - chr4_1:65009367-65009386 None:intergenic 30.0%
AGTTCAAAAAGTCATACTAC+TGG - chr4_1:65009368-65009387 None:intergenic 30.0%
TAAATCTAACGATCTACAGT+TGG + chr4_1:65009497-65009516 Msa0564370:intron 30.0%
!!! TATTGTGGTTCTAGCATTTT+AGG + chr4_1:65009645-65009664 Msa0564370:intron 30.0%
TATCAGAAAAAAAGGCAAGT+AGG - chr4_1:65009772-65009791 None:intergenic 30.0%
CAAAGTAGGTGATAAAATGT+AGG - chr4_1:65009960-65009979 None:intergenic 30.0%
TAGTTTCATGCTTCATTATG+CGG - chr4_1:65010147-65010166 None:intergenic 30.0%
TCACAAATCTAAGTTTGTGA+AGG + chr4_1:65010211-65010230 Msa0564370:intron 30.0%
TTTACTTTAATTGCTGCAAG+CGG - chr4_1:65010395-65010414 None:intergenic 30.0%
! TATTATTAGGGATGCCTTTT+TGG + chr4_1:65010508-65010527 Msa0564370:intron 30.0%
TGCTATTGTAAAGTAGATTC+AGG + chr4_1:65010594-65010613 Msa0564370:CDS 30.0%
AAAAGAAATTTCCAGACAGA+AGG - chr4_1:65010848-65010867 None:intergenic 30.0%
! GAAATTTCTTTTATTCGCTC+CGG + chr4_1:65010856-65010875 Msa0564370:CDS 30.0%
ATTGCCATATTTGGTAGATA+GGG - chr4_1:65010962-65010981 None:intergenic 30.0%
AATCCAAGTATCTCACTTAA+CGG + chr4_1:65011452-65011471 Msa0564370:CDS 30.0%
GGTCTTTAGTTAGGAATTTA+TGG + chr4_1:65011741-65011760 Msa0564370:CDS 30.0%
TACACAGATAAGGAAATTGT+TGG + chr4_1:65011863-65011882 Msa0564370:three_prime_UTR 30.0%
!! AGATTTTGGCAATAGAATTG+AGG + chr4_1:65011913-65011932 Msa0564370:three_prime_UTR 30.0%
ACATTATAATGCTCCCTATT+CGG - chr4_1:65011962-65011981 None:intergenic 30.0%
TCATATACAACATCAATGCA+TGG - chr4_1:65012051-65012070 None:intergenic 30.0%
GTTATCACAGTTGTATCTTT+AGG + chr4_1:65012089-65012108 Msa0564370:three_prime_UTR 30.0%
! ACTTACTGAAGAATTTTCCA+TGG + chr4_1:65012212-65012231 Msa0564370:three_prime_UTR 30.0%
!!! GGATATAATTTTGAGATCCA+TGG - chr4_1:65012232-65012251 None:intergenic 30.0%
CAATACATGAACACATATGA+TGG - chr4_1:65012253-65012272 None:intergenic 30.0%
! CTTTTCTGCACTTACTAGAT+CGG + chr4_1:65007540-65007559 Msa0564370:intron 35.0%
! TTTTCTGCACTTACTAGATC+GGG + chr4_1:65007541-65007560 Msa0564370:intron 35.0%
TCAAAGGCTAGATTCAAAAG+GGG + chr4_1:65007573-65007592 Msa0564370:intron 35.0%
GAATCAACTGAAATTACCAG+TGG - chr4_1:65007729-65007748 None:intergenic 35.0%
TCACATTGTGAATGAAGACA+CGG - chr4_1:65008660-65008679 None:intergenic 35.0%
GTCTTCATTCACAATGTGAA+TGG + chr4_1:65008661-65008680 Msa0564370:intron 35.0%
ACAACCTCTTGTGTAAAAAC+AGG + chr4_1:65008892-65008911 Msa0564370:intron 35.0%
CAACCTCTTGTGTAAAAACA+GGG + chr4_1:65008893-65008912 Msa0564370:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_1:65008899-65008918 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_1:65008898-65008917 Msa0564370:intron 35.0%
TAAAAGAATAAAGGGCAACC+CGG - chr4_1:65008990-65009009 None:intergenic 35.0%
CAAGCACAAGTGAATCAATA+AGG - chr4_1:65009023-65009042 None:intergenic 35.0%
!! CTTATTGATTCACTTGTGCT+TGG + chr4_1:65009021-65009040 Msa0564370:intron 35.0%
TCGCATTGTAAATGAAGACA+CGG - chr4_1:65009149-65009168 None:intergenic 35.0%
TCATTTACAATGCGAATGAC+AGG + chr4_1:65009154-65009173 Msa0564370:intron 35.0%
GGAATGTCAATATGCCAAAA+AGG + chr4_1:65009236-65009255 Msa0564370:intron 35.0%
! GTTCTGCAATATTCCCTTTT+TGG - chr4_1:65009253-65009272 None:intergenic 35.0%
ATATTGCAGAACATGTAGCT+TGG + chr4_1:65009261-65009280 Msa0564370:intron 35.0%
TATTGCAGAACATGTAGCTT+GGG + chr4_1:65009262-65009281 Msa0564370:intron 35.0%
!! ATCCTCTACTTCTAGCTTTA+CGG + chr4_1:65009432-65009451 Msa0564370:intron 35.0%
CTTAATCTACAATGGTCTAC+AGG - chr4_1:65009466-65009485 None:intergenic 35.0%
GAGACTCTCTTAATCTACAA+TGG - chr4_1:65009474-65009493 None:intergenic 35.0%
AAGACAGCATACAATGTGTA+AGG - chr4_1:65009572-65009591 None:intergenic 35.0%
TCCTCCAAACTCTATTCTAA+AGG + chr4_1:65009610-65009629 Msa0564370:intron 35.0%
!! ACCTTTAGAATAGAGTTTGG+AGG - chr4_1:65009614-65009633 None:intergenic 35.0%
!! CACACCTTTAGAATAGAGTT+TGG - chr4_1:65009617-65009636 None:intergenic 35.0%
! CAAACTCTATTCTAAAGGTG+TGG + chr4_1:65009615-65009634 Msa0564370:intron 35.0%
! TATTCTAAAGGTGTGGAACT+GGG + chr4_1:65009622-65009641 Msa0564370:intron 35.0%
TATTGATGCGTAGTATGTGT+TGG + chr4_1:65009726-65009745 Msa0564370:intron 35.0%
GAAATGTCAAATCACGTTGA+TGG + chr4_1:65009879-65009898 Msa0564370:intron 35.0%
!! AAATCACGTTGATGGTGATT+GGG + chr4_1:65009887-65009906 Msa0564370:intron 35.0%
! GGAATTTTCCTTCACAAACT+CGG - chr4_1:65010074-65010093 None:intergenic 35.0%
GAGTTTGTGAAGGAAAATTC+CGG + chr4_1:65010073-65010092 Msa0564370:intron 35.0%
GCATGAAACTAATATTGCCT+TGG + chr4_1:65010156-65010175 Msa0564370:intron 35.0%
GAAACTAATATTGCCTTGGT+TGG + chr4_1:65010160-65010179 Msa0564370:intron 35.0%
AAGTTTGTGAAGGAAAACTC+TGG + chr4_1:65010221-65010240 Msa0564370:intron 35.0%
TGAAAGCAATATTGCCTTGT+TGG + chr4_1:65010306-65010325 Msa0564370:intron 35.0%
ACAAACATCATGAGATCAAC+AGG - chr4_1:65010332-65010351 None:intergenic 35.0%
TGATCTCATGATGTTTGTGA+TGG + chr4_1:65010334-65010353 Msa0564370:intron 35.0%
GATCTCATGATGTTTGTGAT+GGG + chr4_1:65010335-65010354 Msa0564370:intron 35.0%
! TGTTTGTGATGGGAATAACT+TGG + chr4_1:65010345-65010364 Msa0564370:intron 35.0%
TTACTTTAATTGCTGCAAGC+GGG - chr4_1:65010394-65010413 None:intergenic 35.0%
ACTAACAGGTAAAGTTTCAC+AGG + chr4_1:65010557-65010576 Msa0564370:intron 35.0%
! TTTTTGTTCCTGTGTGCATT+CGG - chr4_1:65010690-65010709 None:intergenic 35.0%
TTGACCCTATCTACCAAATA+TGG + chr4_1:65010955-65010974 Msa0564370:CDS 35.0%
GATTGCCATATTTGGTAGAT+AGG - chr4_1:65010963-65010982 None:intergenic 35.0%
!! TATTCTGAAGCATTGGGATT+TGG + chr4_1:65011005-65011024 Msa0564370:CDS 35.0%
AATAAAAGGAACCATAGCTG+TGG - chr4_1:65011303-65011322 None:intergenic 35.0%
! ACAGCTATGGTTCCTTTTAT+TGG + chr4_1:65011302-65011321 Msa0564370:CDS 35.0%
! GTGTTATTCATAATGGCACA+TGG + chr4_1:65011324-65011343 Msa0564370:CDS 35.0%
! TAATGGCACATGGTTTTTGA+AGG + chr4_1:65011334-65011353 Msa0564370:CDS 35.0%
! AATGGCACATGGTTTTTGAA+GGG + chr4_1:65011335-65011354 Msa0564370:CDS 35.0%
TGGGAAAATATTGCTGGAAA+GGG + chr4_1:65011710-65011729 Msa0564370:CDS 35.0%
AATTTATGGTCTACTATCGC+AGG + chr4_1:65011755-65011774 Msa0564370:CDS 35.0%
ATTTATGGTCTACTATCGCA+GGG + chr4_1:65011756-65011775 Msa0564370:CDS 35.0%
ACTGTCATGAATACCGAATA+GGG + chr4_1:65011946-65011965 Msa0564370:three_prime_UTR 35.0%
!! GTAAATGTTGTTTCGCTCTA+AGG + chr4_1:65011980-65011999 Msa0564370:three_prime_UTR 35.0%
!! GATCGGGTTTCAAGTTTCAA+AGG + chr4_1:65007557-65007576 Msa0564370:intron 40.0%
TGCAATGTCAAAAGCCTAGA+TGG - chr4_1:65008215-65008234 None:intergenic 40.0%
TAAGAAAGGACTGAATTGGC+AGG + chr4_1:65008427-65008446 Msa0564370:intron 40.0%
CACATTGTGAATGAAGACAC+GGG - chr4_1:65008659-65008678 None:intergenic 40.0%
TCATTCACAATGTGAATGGC+AGG + chr4_1:65008665-65008684 Msa0564370:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr4_1:65008848-65008867 Msa0564370:intron 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr4_1:65008888-65008907 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_1:65008924-65008943 Msa0564370:intron 40.0%
CGCATTGTAAATGAAGACAC+GGG - chr4_1:65009148-65009167 None:intergenic 40.0%
TATTGACATTCCAGCCTTGA+GGG - chr4_1:65009228-65009247 None:intergenic 40.0%
ATATTGACATTCCAGCCTTG+AGG - chr4_1:65009229-65009248 None:intergenic 40.0%
AATCTACAATGGTCTACAGG+CGG - chr4_1:65009463-65009482 None:intergenic 40.0%
!! CTACTTGGATCCTCTAAAAC+CGG - chr4_1:65009536-65009555 None:intergenic 40.0%
ACAGCATACAATGTGTAAGG+TGG - chr4_1:65009569-65009588 None:intergenic 40.0%
! CTATTCTAAAGGTGTGGAAC+TGG + chr4_1:65009621-65009640 Msa0564370:intron 40.0%
!! CTGGAGGGTATCAGAAAAAA+AGG - chr4_1:65009780-65009799 None:intergenic 40.0%
! GTCGATTCAAAAAGTCTGGA+GGG - chr4_1:65009795-65009814 None:intergenic 40.0%
! AGTCGATTCAAAAAGTCTGG+AGG - chr4_1:65009796-65009815 None:intergenic 40.0%
! CGTAGTCGATTCAAAAAGTC+TGG - chr4_1:65009799-65009818 None:intergenic 40.0%
GAATGCTGCACTGAATGTTT+AGG - chr4_1:65009832-65009851 None:intergenic 40.0%
ACATTCAGTGCAGCATTCTA+TGG + chr4_1:65009834-65009853 Msa0564370:intron 40.0%
CATTCAGTGCAGCATTCTAT+GGG + chr4_1:65009835-65009854 Msa0564370:intron 40.0%
!! CAAATCACGTTGATGGTGAT+TGG + chr4_1:65009886-65009905 Msa0564370:intron 40.0%
!! GACGCGTTTTAACAGAAAGA+CGG - chr4_1:65010007-65010026 None:intergenic 40.0%
AACAGCTTGGGCTAATATGA+AGG - chr4_1:65010035-65010054 None:intergenic 40.0%
TTCATATTAGCCCAAGCTGT+TGG + chr4_1:65010034-65010053 Msa0564370:intron 40.0%
TCATATTAGCCCAAGCTGTT+GGG + chr4_1:65010035-65010054 Msa0564370:intron 40.0%
TCACAAATCCGAGTTTGTGA+AGG + chr4_1:65010063-65010082 Msa0564370:intron 40.0%
ATTCCGGTGCATGTATGTAT+CGG + chr4_1:65010089-65010108 Msa0564370:intron 40.0%
TGAGTTCAATAGACCAACCA+AGG - chr4_1:65010176-65010195 None:intergenic 40.0%
! TTGTGATGGGAATAACTTGG+TGG + chr4_1:65010348-65010367 Msa0564370:intron 40.0%
TACTTTAATTGCTGCAAGCG+GGG - chr4_1:65010393-65010412 None:intergenic 40.0%
TGGATGCATATCTTTGATCC+TGG - chr4_1:65010654-65010673 None:intergenic 40.0%
! CATTCGGGTTTATATCAGGT+TGG - chr4_1:65010674-65010693 None:intergenic 40.0%
! TGTGCATTCGGGTTTATATC+AGG - chr4_1:65010678-65010697 None:intergenic 40.0%
ATATAAACCCGAATGCACAC+AGG + chr4_1:65010679-65010698 Msa0564370:CDS 40.0%
! TTTTGTTCCTGTGTGCATTC+GGG - chr4_1:65010689-65010708 None:intergenic 40.0%
CAAGCAATAGCAAGATCATC+AGG - chr4_1:65010762-65010781 None:intergenic 40.0%
AGTTTCCTATGTTCAACTCG+GGG - chr4_1:65010798-65010817 None:intergenic 40.0%
CAGTTTCCTATGTTCAACTC+GGG - chr4_1:65010799-65010818 None:intergenic 40.0%
GCAGTTTCCTATGTTCAACT+CGG - chr4_1:65010800-65010819 None:intergenic 40.0%
TGAACATAGGAAACTGCGTT+TGG + chr4_1:65010803-65010822 Msa0564370:CDS 40.0%
TCTTGGAATGGCAGAAGAAT+GGG + chr4_1:65010884-65010903 Msa0564370:CDS 40.0%
! GCAGTGAAATTTTTCCCTCA+CGG - chr4_1:65010929-65010948 None:intergenic 40.0%
AATGCTTCAGAATATTCCCC+AGG - chr4_1:65010999-65011018 None:intergenic 40.0%
!! TGGGGAATATTCTGAAGCAT+TGG + chr4_1:65010998-65011017 Msa0564370:CDS 40.0%
!! GGGGAATATTCTGAAGCATT+GGG + chr4_1:65010999-65011018 Msa0564370:CDS 40.0%
TTCCACCAAACAAGTACAAG+TGG - chr4_1:65011052-65011071 None:intergenic 40.0%
ACAACGCGCGTACAAATAAA+TGG + chr4_1:65011111-65011130 Msa0564370:CDS 40.0%
AATAACTGCCTCTATGTTGC+TGG + chr4_1:65011188-65011207 Msa0564370:CDS 40.0%
! GAACAGATGGAGCTTTATCT+CGG + chr4_1:65011271-65011290 Msa0564370:CDS 40.0%
!! ATGGCACATGGTTTTTGAAG+GGG + chr4_1:65011336-65011355 Msa0564370:CDS 40.0%
CATATGTGAAGCCTATTCAC+AGG + chr4_1:65011379-65011398 Msa0564370:CDS 40.0%
GACTCCAGTAAACAATGGAA+TGG + chr4_1:65011415-65011434 Msa0564370:CDS 40.0%
ACGACCATTCCATTGTTTAC+TGG - chr4_1:65011422-65011441 None:intergenic 40.0%
AGTAAACAATGGAATGGTCG+TGG + chr4_1:65011421-65011440 Msa0564370:CDS 40.0%
GTAAACAATGGAATGGTCGT+GGG + chr4_1:65011422-65011441 Msa0564370:CDS 40.0%
TCTCCGTTAAGTGAGATACT+TGG - chr4_1:65011458-65011477 None:intergenic 40.0%
TATGCACTTGATTGCCAAGA+CGG + chr4_1:65011482-65011501 Msa0564370:CDS 40.0%
CAAAGTCTATGATATGGCGA+CGG + chr4_1:65011514-65011533 Msa0564370:CDS 40.0%
GGAAGAAGTTTATCGATAGC+AGG + chr4_1:65011543-65011562 Msa0564370:CDS 40.0%
ATCGATAGCAGGCTTCATTT+AGG + chr4_1:65011554-65011573 Msa0564370:CDS 40.0%
! GCTGCTCTTGTTTCACTTAA+TGG + chr4_1:65011599-65011618 Msa0564370:CDS 40.0%
CAACAATATGAGCATCAGTC+TGG + chr4_1:65011640-65011659 Msa0564370:CDS 40.0%
! TTGTTTTCAACGCGTCTGTT+TGG - chr4_1:65011680-65011699 None:intergenic 40.0%
TTGAAAACAATCCTCACCTC+TGG + chr4_1:65011690-65011709 Msa0564370:CDS 40.0%
TGAAAACAATCCTCACCTCT+GGG + chr4_1:65011691-65011710 Msa0564370:CDS 40.0%
! TTCCAGCAATATTTTCCCAG+AGG - chr4_1:65011709-65011728 None:intergenic 40.0%
CTGGGAAAATATTGCTGGAA+AGG + chr4_1:65011709-65011728 Msa0564370:CDS 40.0%
TTCCTAACTAAAGACCTGAC+AGG - chr4_1:65011737-65011756 None:intergenic 40.0%
TCGGTATTCATGACAGTGAA+GGG - chr4_1:65011943-65011962 None:intergenic 40.0%
TTCGGTATTCATGACAGTGA+AGG - chr4_1:65011944-65011963 None:intergenic 40.0%
CACTGTCATGAATACCGAAT+AGG + chr4_1:65011945-65011964 Msa0564370:three_prime_UTR 40.0%
TTTCAGTTAGTAGGGAGAAG+AGG + chr4_1:65012126-65012145 Msa0564370:three_prime_UTR 40.0%
GGATATCATATCCCATGTTG+TGG + chr4_1:65012147-65012166 Msa0564370:three_prime_UTR 40.0%
! AACAGCTTTTGCCACAACAT+GGG - chr4_1:65012161-65012180 None:intergenic 40.0%
!! TCACCACTTGCTGTAAGCTT+TGG + chr4_1:65008249-65008268 Msa0564370:intron 45.0%
TCTCCAAAGCTTACAGCAAG+TGG - chr4_1:65008255-65008274 None:intergenic 45.0%
!! GTCATTGATTCACCTGTGCT+AGG + chr4_1:65008532-65008551 Msa0564370:intron 45.0%
TGAATGGCAGGAATTGTCGA+AGG + chr4_1:65008677-65008696 Msa0564370:intron 45.0%
TGGAGAGAGACTGATGCTTT+AGG + chr4_1:65008761-65008780 Msa0564370:intron 45.0%
! CTTTTTGTGAGGGGTAACCT+TGG + chr4_1:65008812-65008831 Msa0564370:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr4_1:65008854-65008873 Msa0564370:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr4_1:65008855-65008874 Msa0564370:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_1:65008920-65008939 Msa0564370:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_1:65008923-65008942 Msa0564370:intron 45.0%
CGAATGACAGGAATTGTCGA+AGG + chr4_1:65009166-65009185 Msa0564370:intron 45.0%
AGTTCATGAAAACACCAGCG+AGG + chr4_1:65009389-65009408 Msa0564370:intron 45.0%
TGCCGTAAAGCTAGAAGTAG+AGG - chr4_1:65009437-65009456 None:intergenic 45.0%
!! CACGATAAAGCCGGTTTTAG+AGG + chr4_1:65009523-65009542 Msa0564370:intron 45.0%
!!! CGGTTTTAGAGGATCCAAGT+AGG + chr4_1:65009534-65009553 Msa0564370:intron 45.0%
GAGTTTGGAGGATATCGCTT+CGG - chr4_1:65009602-65009621 None:intergenic 45.0%
CACTGAATGTTTAGGCTGAG+GGG - chr4_1:65009824-65009843 None:intergenic 45.0%
GCACTGAATGTTTAGGCTGA+GGG - chr4_1:65009825-65009844 None:intergenic 45.0%
TGCACTGAATGTTTAGGCTG+AGG - chr4_1:65009826-65009845 None:intergenic 45.0%
CTTCCGATACATACATGCAC+CGG - chr4_1:65010095-65010114 None:intergenic 45.0%
ATGAGATCAACAGGCCAACA+AGG - chr4_1:65010323-65010342 None:intergenic 45.0%
!! TGCGTTTGGTTTGCAAGAGA+TGG + chr4_1:65010817-65010836 Msa0564370:CDS 45.0%
TATTCGCTCCGGAAAAGTCT+TGG + chr4_1:65010867-65010886 Msa0564370:CDS 45.0%
! CTGCCATTCCAAGACTTTTC+CGG - chr4_1:65010878-65010897 None:intergenic 45.0%
GTCTTGGAATGGCAGAAGAA+TGG + chr4_1:65010883-65010902 Msa0564370:CDS 45.0%
TGTCATCAAAAGAGACCGTG+AGG + chr4_1:65010911-65010930 Msa0564370:CDS 45.0%
GTCATCAAAAGAGACCGTGA+GGG + chr4_1:65010912-65010931 Msa0564370:CDS 45.0%
TCAGAATATTCCCCAGGAAC+AGG - chr4_1:65010993-65011012 None:intergenic 45.0%
CAAGTGGCAACCACTAAGAA+CGG - chr4_1:65011036-65011055 None:intergenic 45.0%
! GGTTGCCACTTGTACTTGTT+TGG + chr4_1:65011044-65011063 Msa0564370:CDS 45.0%
! TGCCACTTGTACTTGTTTGG+TGG + chr4_1:65011047-65011066 Msa0564370:CDS 45.0%
ATCCGTTGAAGGGATCTATG+AGG + chr4_1:65011075-65011094 Msa0564370:CDS 45.0%
ATGACGTTTCCGCAGCATAT+CGG - chr4_1:65011147-65011166 None:intergenic 45.0%
! CTGCGGAAACGTCATCTTTT+TGG + chr4_1:65011152-65011171 Msa0564370:CDS 45.0%
AAGAACTCTTCGATCTGCTG+AGG + chr4_1:65011232-65011251 Msa0564370:CDS 45.0%
CTGAGGTTTACGACCCTAAT+CGG + chr4_1:65011249-65011268 Msa0564370:CDS 45.0%
AGCTCCATCTGTTCCGATTA+GGG - chr4_1:65011265-65011284 None:intergenic 45.0%
AAGCTCCATCTGTTCCGATT+AGG - chr4_1:65011266-65011285 None:intergenic 45.0%
!! ACATGGTTTTTGAAGGGGCT+CGG + chr4_1:65011341-65011360 Msa0564370:CDS 45.0%
! GGTATCGGATTCCTGTGAAT+AGG - chr4_1:65011393-65011412 None:intergenic 45.0%
ATTCACAGGAATCCGATACC+TGG + chr4_1:65011393-65011412 Msa0564370:CDS 45.0%
GTTTACTGGAGTCCAGGTAT+CGG - chr4_1:65011408-65011427 None:intergenic 45.0%
ACCTGGACTCCAGTAAACAA+TGG + chr4_1:65011410-65011429 Msa0564370:CDS 45.0%
TCCATTGTTTACTGGAGTCC+AGG - chr4_1:65011414-65011433 None:intergenic 45.0%
! CTTTGAGTTTACAGCCGTCT+TGG - chr4_1:65011499-65011518 None:intergenic 45.0%
! ATGATATGGCGACGGATTCA+TGG + chr4_1:65011522-65011541 Msa0564370:CDS 45.0%
! GCAATATTTTCCCAGAGGTG+AGG - chr4_1:65011704-65011723 None:intergenic 45.0%
! CACCTCTGGGAAAATATTGC+TGG + chr4_1:65011704-65011723 Msa0564370:CDS 45.0%
GTCCTGTCAGGTCTTTAGTT+AGG + chr4_1:65011732-65011751 Msa0564370:CDS 45.0%
GAACTTGTGGATCTCATCTC+AGG - chr4_1:65011828-65011847 None:intergenic 45.0%
CGGTATTCATGACAGTGAAG+GGG - chr4_1:65011942-65011961 None:intergenic 45.0%
! GAACAGCTTTTGCCACAACA+TGG - chr4_1:65012162-65012181 None:intergenic 45.0%
! AAGTAGACTCTTTTGCGCAG+TGG + chr4_1:65012289-65012308 Msa0564370:three_prime_UTR 45.0%
!! TTATATTTATATATACTTTA+AGG + chr4_1:65008731-65008750 Msa0564370:intron 5.0%
!! CTCTAGAGTTCAAGCTCCAC+TGG + chr4_1:65007710-65007729 Msa0564370:CDS 50.0%
TGATTCACCTGTGCTAGGTC+TGG + chr4_1:65008537-65008556 Msa0564370:intron 50.0%
GATTCACCTGTGCTAGGTCT+GGG + chr4_1:65008538-65008557 Msa0564370:intron 50.0%
AAAACACCCAGACCTAGCAC+AGG - chr4_1:65008547-65008566 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4_1:65008832-65008851 None:intergenic 50.0%
AGTTGGCTGCACGATAAAGC+CGG + chr4_1:65009514-65009533 Msa0564370:intron 50.0%
GGTGGACGATTCATCCTACT+TGG - chr4_1:65009551-65009570 None:intergenic 50.0%
! AGGTGTGGAACTGGGTATTG+TGG + chr4_1:65009630-65009649 Msa0564370:intron 50.0%
GTGAAGAAGCCCAACAGCTT+GGG - chr4_1:65010047-65010066 None:intergenic 50.0%
TGTGAAGAAGCCCAACAGCT+TGG - chr4_1:65010048-65010067 None:intergenic 50.0%
TAATTGCTGCAAGCGGGGAA+CGG - chr4_1:65010388-65010407 None:intergenic 50.0%
TCAGGCCTGAAAACAGTAGC+TGG + chr4_1:65010612-65010631 Msa0564370:CDS 50.0%
CAGGCCTGAAAACAGTAGCT+GGG + chr4_1:65010613-65010632 Msa0564370:CDS 50.0%
AGGCCTGAAAACAGTAGCTG+GGG + chr4_1:65010614-65010633 Msa0564370:CDS 50.0%
TCAGGAAGACCAGGTAGCAA+AGG - chr4_1:65010744-65010763 None:intergenic 50.0%
GCAAGATCATCAGGAAGACC+AGG - chr4_1:65010753-65010772 None:intergenic 50.0%
! GTGTACCCCGAGTTGAACAT+AGG + chr4_1:65010790-65010809 Msa0564370:CDS 50.0%
AGATGGTATCGCCTTCTGTC+TGG + chr4_1:65010834-65010853 Msa0564370:CDS 50.0%
GCTCCGGAAAAGTCTTGGAA+TGG + chr4_1:65010872-65010891 Msa0564370:CDS 50.0%
AATATTCCCCAGGAACAGGC+GGG - chr4_1:65010989-65011008 None:intergenic 50.0%
GAATATTCCCCAGGAACAGG+CGG - chr4_1:65010990-65011009 None:intergenic 50.0%
! TTTGGCTGTGCCGTTCTTAG+TGG + chr4_1:65011023-65011042 Msa0564370:CDS 50.0%
TGGTGGAAGAGATCCGTTGA+AGG + chr4_1:65011064-65011083 Msa0564370:CDS 50.0%
GGTGGAAGAGATCCGTTGAA+GGG + chr4_1:65011065-65011084 Msa0564370:CDS 50.0%
CGCCTCATAGATCCCTTCAA+CGG - chr4_1:65011080-65011099 None:intergenic 50.0%
TGACGTTTCCGCAGCATATC+GGG - chr4_1:65011146-65011165 None:intergenic 50.0%
AACTGCCTCTATGTTGCTGG+TGG + chr4_1:65011191-65011210 Msa0564370:CDS 50.0%
ACTGCCTCTATGTTGCTGGT+GGG + chr4_1:65011192-65011211 Msa0564370:CDS 50.0%
ATTCCCCACCAGCAACATAG+AGG - chr4_1:65011199-65011218 None:intergenic 50.0%
GTTGCTGGTGGGGAATGTAA+AGG + chr4_1:65011203-65011222 Msa0564370:CDS 50.0%
ACGACCCTAATCGGAACAGA+TGG + chr4_1:65011258-65011277 Msa0564370:CDS 50.0%
!! CATGGTTTTTGAAGGGGCTC+GGG + chr4_1:65011342-65011361 Msa0564370:CDS 50.0%
ACAATGGAATGGTCGTGGGA+TGG + chr4_1:65011426-65011445 Msa0564370:CDS 50.0%
!! TGTTTCGCTCTAAGGCTCTG+TGG + chr4_1:65011988-65012007 Msa0564370:three_prime_UTR 50.0%
GTCCAGCTGCTCAACCATCT+AGG + chr4_1:65008198-65008217 Msa0564370:intron 55.0%
AGCCTAGATGGTTGAGCAGC+TGG - chr4_1:65008203-65008222 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_1:65008867-65008886 Msa0564370:intron 55.0%
CTGAAGCTCCCACATACGCA+GGG - chr4_1:65008963-65008982 None:intergenic 55.0%
ACTGAAGCTCCCACATACGC+AGG - chr4_1:65008964-65008983 None:intergenic 55.0%
ATGTGGGAGCTTCAGTGCAC+CGG + chr4_1:65008968-65008987 Msa0564370:intron 55.0%
TACCAATGGGAGGTCCCTCA+AGG + chr4_1:65009211-65009230 Msa0564370:intron 55.0%
ACCAGCGAGGCAGAAGAACA+CGG + chr4_1:65009402-65009421 Msa0564370:intron 55.0%
AGGCAGAAGAACACGGAAGC+TGG + chr4_1:65009409-65009428 Msa0564370:intron 55.0%
GGAGGATATCGCTTCGGTGA+AGG - chr4_1:65009596-65009615 None:intergenic 55.0%
! TCGCCCCAGCTACTGTTTTC+AGG - chr4_1:65010620-65010639 None:intergenic 55.0%
TGAAAACAGTAGCTGGGGCG+AGG + chr4_1:65010619-65010638 Msa0564370:CDS 55.0%
GTTCAGCCTCCTTTGCTACC+TGG + chr4_1:65010732-65010751 Msa0564370:CDS 55.0%
GGAAGACCAGGTAGCAAAGG+AGG - chr4_1:65010741-65010760 None:intergenic 55.0%
GCGGGAGGGATTGCCATATT+TGG - chr4_1:65010971-65010990 None:intergenic 55.0%
! ACAGAGCACCCGATATGCTG+CGG + chr4_1:65011135-65011154 Msa0564370:CDS 55.0%
CTGCCTCTATGTTGCTGGTG+GGG + chr4_1:65011193-65011212 Msa0564370:CDS 55.0%
CTCGGAGATGACCACAGCTA+TGG + chr4_1:65011289-65011308 Msa0564370:CDS 55.0%
TTGCTGGAAAGGGTCCTGTC+AGG + chr4_1:65011720-65011739 Msa0564370:CDS 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr4_1:65008821-65008840 Msa0564370:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_1:65008936-65008955 Msa0564370:intron 60.0%
ACATACGCAGGGTCCGGGAA+GGG - chr4_1:65008952-65008971 None:intergenic 60.0%
TTCCCGGACCCTGCGTATGT+GGG + chr4_1:65008952-65008971 Msa0564370:intron 60.0%
TGTGGGAGCTTCAGTGCACC+GGG + chr4_1:65008969-65008988 Msa0564370:intron 60.0%
AGCCTTGAGGGACCTCCCAT+TGG - chr4_1:65009216-65009235 None:intergenic 60.0%
AATGGGAGGTCCCTCAAGGC+TGG + chr4_1:65009215-65009234 Msa0564370:intron 60.0%
TCCGTGTTCTTCTGCCTCGC+TGG - chr4_1:65009406-65009425 None:intergenic 60.0%
! GGGGCGAGGAAGTTTGTTCC+AGG + chr4_1:65010633-65010652 Msa0564370:CDS 60.0%
AATCCCTCCCGCCTGTTCCT+GGG + chr4_1:65010979-65010998 Msa0564370:CDS 60.0%
TGGTCTACTATCGCAGGGCG+CGG + chr4_1:65011761-65011780 Msa0564370:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_1:65008938-65008957 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr4_1:65008951-65008970 None:intergenic 65.0%
CACATACGCAGGGTCCGGGA+AGG - chr4_1:65008953-65008972 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+TGG + chr4_1:65008951-65008970 Msa0564370:intron 65.0%
CTCCCACATACGCAGGGTCC+GGG - chr4_1:65008957-65008976 None:intergenic 65.0%
GCTCCCACATACGCAGGGTC+CGG - chr4_1:65008958-65008977 None:intergenic 65.0%
CAATCCCTCCCGCCTGTTCC+TGG + chr4_1:65010978-65010997 Msa0564370:CDS 65.0%
ATCCCTCCCGCCTGTTCCTG+GGG + chr4_1:65010980-65010999 Msa0564370:CDS 65.0%
TTCCCCAGGAACAGGCGGGA+GGG - chr4_1:65010985-65011004 None:intergenic 65.0%
ATTCCCCAGGAACAGGCGGG+AGG - chr4_1:65010986-65011005 None:intergenic 65.0%
TCTACTATCGCAGGGCGCGG+TGG + chr4_1:65011764-65011783 Msa0564370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65007514 65012332 65007514 ID=Msa0564370;Name=Msa0564370
chr4_1 mRNA 65007514 65012332 65007514 ID=Msa0564370-mRNA-1;Parent=Msa0564370;Name=Msa0564370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=16|0.5|0.33|1|0|0.66|3|503|437
chr4_1 exon 65007514 65007521 65007514 ID=Msa0564370-mRNA-1:exon:20910;Parent=Msa0564370-mRNA-1
chr4_1 exon 65007661 65007731 65007661 ID=Msa0564370-mRNA-1:exon:20911;Parent=Msa0564370-mRNA-1
chr4_1 exon 65010579 65012332 65010579 ID=Msa0564370-mRNA-1:exon:20912;Parent=Msa0564370-mRNA-1
chr4_1 five_prime_UTR 65007514 65007521 65007514 ID=Msa0564370-mRNA-1:five_prime_utr;Parent=Msa0564370-mRNA-1
chr4_1 five_prime_UTR 65007661 65007668 65007661 ID=Msa0564370-mRNA-1:five_prime_utr;Parent=Msa0564370-mRNA-1
chr4_1 CDS 65007669 65007731 65007669 ID=Msa0564370-mRNA-1:cds;Parent=Msa0564370-mRNA-1
chr4_1 CDS 65010579 65011829 65010579 ID=Msa0564370-mRNA-1:cds;Parent=Msa0564370-mRNA-1
chr4_1 three_prime_UTR 65011830 65012332 65011830 ID=Msa0564370-mRNA-1:three_prime_utr;Parent=Msa0564370-mRNA-1
Gene Sequence

>Msa0564370

ATGAATCAGTTAGTTGAAAGTTCTGCTAATTCTCAAAGGGTCTCTAGAGTTCAAGCTCCACTGGTAGATTCTGTTTCATGCTATTGTAAAGTAGATTCAGGCCTGAAAACAGTAGCTGGGGCGAGGAAGTTTGTTCCAGGATCAAAGATATGCATCCAACCTGATATAAACCCGAATGCACACAGGAACAAAAACTCGCGTAAAGAGAAGACAAGAGTTCAGCCTCCTTTGCTACCTGGTCTTCCTGATGATCTTGCTATTGCTTGTCTAATTCGTGTACCCCGAGTTGAACATAGGAAACTGCGTTTGGTTTGCAAGAGATGGTATCGCCTTCTGTCTGGAAATTTCTTTTATTCGCTCCGGAAAAGTCTTGGAATGGCAGAAGAATGGGTTTATGTCATCAAAAGAGACCGTGAGGGAAAAATTTCACTGCACGCTTTTGACCCTATCTACCAAATATGGCAATCCCTCCCGCCTGTTCCTGGGGAATATTCTGAAGCATTGGGATTTGGCTGTGCCGTTCTTAGTGGTTGCCACTTGTACTTGTTTGGTGGAAGAGATCCGTTGAAGGGATCTATGAGGCGTGTCATTTTCTACAACGCGCGTACAAATAAATGGCACAGAGCACCCGATATGCTGCGGAAACGTCATCTTTTTGGTTCTTGCGTAATAAATAACTGCCTCTATGTTGCTGGTGGGGAATGTAAAGGAATTCAAAGAACTCTTCGATCTGCTGAGGTTTACGACCCTAATCGGAACAGATGGAGCTTTATCTCGGAGATGACCACAGCTATGGTTCCTTTTATTGGTGTTATTCATAATGGCACATGGTTTTTGAAGGGGCTCGGGTCGAATCGCAATGTCATATGTGAAGCCTATTCACAGGAATCCGATACCTGGACTCCAGTAAACAATGGAATGGTCGTGGGATGGCGTAATCCAAGTATCTCACTTAACGGAGAACTCTATGCACTTGATTGCCAAGACGGCTGTAAACTCAAAGTCTATGATATGGCGACGGATTCATGGAAGAAGTTTATCGATAGCAGGCTTCATTTAGGCAGCTCTCGTGCTCTCGATGCTGCTGCTCTTGTTTCACTTAATGGAAAACTATGCATTATACGCAACAATATGAGCATCAGTCTGGTTGATGTTTCGAGTCCAAACAGACGCGTTGAAAACAATCCTCACCTCTGGGAAAATATTGCTGGAAAGGGTCCTGTCAGGTCTTTAGTTAGGAATTTATGGTCTACTATCGCAGGGCGCGGTGGTTTGAAGAGTCACATTGTTCACTGTCAAGTTCTTCAAGCCTGA
Protein sequence

>Msa0564370

MNQLVESSANSQRVSRVQAPLVDSVSCYCKVDSGLKTVAGARKFVPGSKICIQPDINPNAHRNKNSRKEKTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSLRKSLGMAEEWVYVIKRDREGKISLHAFDPIYQIWQSLPPVPGEYSEALGFGCAVLSGCHLYLFGGRDPLKGSMRRVIFYNARTNKWHRAPDMLRKRHLFGSCVINNCLYVAGGECKGIQRTLRSAEVYDPNRNRWSFISEMTTAMVPFIGVIHNGTWFLKGLGSNRNVICEAYSQESDTWTPVNNGMVVGWRNPSISLNGELYALDCQDGCKLKVYDMATDSWKKFIDSRLHLGSSRALDAAALVSLNGKLCIIRNNMSISLVDVSSPNRRVENNPHLWENIAGKGPVRSLVRNLWSTIAGRGGLKSHIVHCQVLQA*