Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564160 | XP_013446625.1 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 5.25e-140 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564160 | sp|Q9SDN0|DNJ20_ARATH | 51.515 | 198 | 83 | 5 | 1 | 190 | 1 | 193 | 1.16e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564160 | A0A072TT90 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 2.51e-140 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0564160 | Msa0564370 | 0.856479 | 3.130075e-62 | -8.615850e-47 |
| Msa0564160 | Msa0564860 | 0.832437 | 9.459320e-56 | -8.615850e-47 |
| Msa0564160 | Msa0616580 | -0.817073 | 3.984527e-52 | -8.615850e-47 |
| Msa0564160 | Msa0655970 | -0.844223 | 8.636677e-59 | -8.615850e-47 |
| Msa0564160 | Msa0699910 | -0.813660 | 2.287877e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564160 | MtrunA17_Chr8g0378161 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 4.83e-144 | 398 |
| Msa0564160 | MtrunA17_Chr4g0050581 | 34.848 | 132 | 75 | 4 | 60 | 189 | 51 | 173 | 1.16e-17 | 76.6 |
| Msa0564160 | MtrunA17_Chr5g0405521 | 48.485 | 66 | 34 | 0 | 62 | 127 | 74 | 139 | 4.14e-15 | 69.7 |
| Msa0564160 | MtrunA17_Chr5g0405491 | 33.333 | 126 | 71 | 2 | 15 | 129 | 17 | 140 | 1.19e-14 | 68.6 |
| Msa0564160 | MtrunA17_Chr5g0405501 | 45.714 | 70 | 38 | 0 | 60 | 129 | 71 | 140 | 1.94e-14 | 67.8 |
| Msa0564160 | MtrunA17_Chr8g0371891 | 42.857 | 70 | 40 | 0 | 60 | 129 | 47 | 116 | 8.21e-14 | 65.5 |
| Msa0564160 | MtrunA17_Chr2g0333221 | 35.644 | 101 | 54 | 2 | 39 | 131 | 41 | 138 | 5.22e-13 | 66.6 |
| Msa0564160 | MtrunA17_Chr3g0103131 | 47.692 | 65 | 34 | 0 | 60 | 124 | 59 | 123 | 6.55e-13 | 63.5 |
| Msa0564160 | MtrunA17_Chr7g0271891 | 46.970 | 66 | 33 | 1 | 61 | 124 | 17 | 82 | 1.13e-12 | 63.2 |
| Msa0564160 | MtrunA17_Chr7g0269841 | 42.466 | 73 | 40 | 1 | 59 | 131 | 25 | 95 | 3.34e-12 | 63.9 |
| Msa0564160 | MtrunA17_Chr8g0344721 | 44.118 | 68 | 34 | 1 | 61 | 124 | 11 | 78 | 3.97e-12 | 62.8 |
| Msa0564160 | MtrunA17_Chr2g0328581 | 32.692 | 104 | 52 | 2 | 62 | 165 | 77 | 162 | 7.45e-12 | 61.6 |
| Msa0564160 | MtrunA17_Chr6g0478651 | 36.066 | 122 | 65 | 5 | 19 | 132 | 21 | 137 | 1.06e-11 | 62.8 |
| Msa0564160 | MtrunA17_Chr3g0123861 | 38.889 | 72 | 41 | 1 | 54 | 125 | 76 | 144 | 1.65e-11 | 62.4 |
| Msa0564160 | MtrunA17_Chr3g0138471 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 1.72e-11 | 62.0 |
| Msa0564160 | MtrunA17_Chr5g0426951 | 42.466 | 73 | 40 | 1 | 58 | 130 | 81 | 151 | 1.80e-11 | 62.0 |
| Msa0564160 | MtrunA17_Chr7g0253281 | 36.559 | 93 | 55 | 2 | 62 | 154 | 56 | 144 | 2.86e-11 | 61.2 |
| Msa0564160 | MtrunA17_Chr1g0206121 | 30.328 | 122 | 76 | 2 | 20 | 141 | 1 | 113 | 6.23e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564160 | AT4G13830.2 | 51.515 | 198 | 83 | 5 | 1 | 190 | 1 | 193 | 1.17e-60 | 187 |
| Msa0564160 | AT4G13830.1 | 53.247 | 154 | 61 | 5 | 1 | 146 | 1 | 151 | 2.62e-43 | 142 |
| Msa0564160 | AT4G13830.3 | 53.247 | 154 | 61 | 5 | 1 | 146 | 1 | 151 | 3.32e-43 | 143 |
| Msa0564160 | AT4G36040.1 | 47.887 | 71 | 36 | 1 | 60 | 129 | 65 | 135 | 1.58e-14 | 68.6 |
| Msa0564160 | AT1G56300.2 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 1.50e-13 | 64.7 |
| Msa0564160 | AT3G13310.1 | 37.624 | 101 | 52 | 3 | 29 | 127 | 35 | 126 | 1.99e-13 | 65.5 |
| Msa0564160 | AT1G56300.1 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 2.21e-13 | 65.1 |
| Msa0564160 | AT2G17880.1 | 45.455 | 66 | 36 | 0 | 60 | 125 | 68 | 133 | 1.89e-12 | 62.8 |
| Msa0564160 | AT4G39960.1 | 40.000 | 80 | 45 | 1 | 55 | 134 | 80 | 156 | 3.74e-12 | 64.3 |
| Msa0564160 | AT4G39960.2 | 40.000 | 80 | 45 | 1 | 55 | 134 | 80 | 156 | 3.74e-12 | 64.3 |
| Msa0564160 | AT3G17830.1 | 36.364 | 121 | 68 | 5 | 20 | 137 | 23 | 137 | 8.04e-12 | 63.5 |
| Msa0564160 | AT2G22360.1 | 38.750 | 80 | 46 | 1 | 55 | 134 | 81 | 157 | 1.09e-11 | 63.2 |
| Msa0564160 | AT3G62600.1 | 41.096 | 73 | 41 | 1 | 59 | 131 | 25 | 95 | 1.09e-11 | 62.8 |
| Msa0564160 | AT3G14200.1 | 43.939 | 66 | 36 | 1 | 60 | 124 | 12 | 77 | 1.75e-11 | 61.2 |
| Msa0564160 | AT5G25530.2 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.38e-11 | 62.0 |
| Msa0564160 | AT1G59980.1 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 3.07e-11 | 61.6 |
| Msa0564160 | AT1G59980.2 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 3.41e-11 | 61.6 |
| Msa0564160 | AT1G80030.2 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.57e-11 | 61.6 |
| Msa0564160 | AT1G80030.3 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.57e-11 | 61.6 |
| Msa0564160 | AT1G80030.1 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.57e-11 | 61.6 |
| Msa0564160 | AT1G80030.4 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.78e-11 | 61.6 |
| Msa0564160 | AT1G59725.1 | 40.000 | 65 | 39 | 0 | 61 | 125 | 5 | 69 | 6.69e-11 | 60.5 |
| Msa0564160 | AT5G59610.2 | 33.871 | 124 | 67 | 5 | 15 | 126 | 16 | 136 | 9.65e-11 | 59.7 |
Find 83 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 4_1:-64749862 | Msa0564160:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 4_1:+64746631 | None:intergenic |
| TATAATAAAATTAAACAAAA+TGG | 0.282522 | 4_1:+64746354 | None:intergenic |
| TTCTAAACAAGTAAACTATA+TGG | 0.291258 | 4_1:+64746414 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | 4_1:+64749834 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 4_1:-64749739 | Msa0564160:CDS |
| TTGAAGGTGGCCCTAAGCTT+TGG | 0.363583 | 4_1:+64749906 | None:intergenic |
| GGTCATCCTTCCCAAAGCTT+AGG | 0.370521 | 4_1:-64749917 | Msa0564160:CDS |
| TGAAGGTGGCCCTAAGCTTT+GGG | 0.386110 | 4_1:+64749907 | None:intergenic |
| CGCCACCACGCCGTCGTTGA+AGG | 0.396835 | 4_1:+64749890 | None:intergenic |
| GATGAAGCGATGATCGCTTC+CGG | 0.398573 | 4_1:+64750010 | None:intergenic |
| GGATGACCCGAATGAGATTC+GGG | 0.401935 | 4_1:+64749932 | None:intergenic |
| ATGAAGCGATGATCGCTTCC+GGG | 0.402149 | 4_1:+64750011 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | 4_1:-64749939 | Msa0564160:CDS |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 4_1:-64749835 | Msa0564160:CDS |
| AGGATGACCCGAATGAGATT+CGG | 0.411788 | 4_1:+64749931 | None:intergenic |
| TCGGGTCATGGGTATGGTGG+TGG | 0.415955 | 4_1:+64749950 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | 4_1:+64749827 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | 4_1:-64749619 | Msa0564160:intron |
| GAGAGAGAGATGCGCTGTTA+CGG | 0.441899 | 4_1:-64750044 | Msa0564160:exon |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 4_1:-64749701 | Msa0564160:CDS |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | 4_1:-64749769 | Msa0564160:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 4_1:+64749938 | None:intergenic |
| GTCATCCTTCCCAAAGCTTA+GGG | 0.466232 | 4_1:-64749916 | Msa0564160:CDS |
| CTCGAATACGCCAGCAGAGG+GGG | 0.466457 | 4_1:-64746572 | Msa0564160:CDS |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | 4_1:-64749938 | Msa0564160:CDS |
| TTATTAGTCGAGTGAACAAA+AGG | 0.467589 | 4_1:-64746691 | Msa0564160:intron |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | 4_1:+64749687 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 4_1:-64749861 | Msa0564160:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 4_1:-64749733 | Msa0564160:CDS |
| CTTCAACGACGGCGTGGTGG+CGG | 0.476011 | 4_1:-64749889 | Msa0564160:CDS |
| CGGGTCATGGGTATGGTGGT+GGG | 0.482731 | 4_1:+64749951 | None:intergenic |
| CGAGTGAACAAAAGGGTGAA+TGG | 0.485223 | 4_1:-64746683 | Msa0564160:CDS |
| CGATCCGGTGGTGAAACATC+CGG | 0.485934 | 4_1:+64749771 | None:intergenic |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | 4_1:-64749676 | Msa0564160:CDS |
| GTATACTCTTCGACCCGATC+CGG | 0.491134 | 4_1:+64749756 | None:intergenic |
| AGTGAAGGAGGAGGTAGTGT+TGG | 0.495639 | 4_1:+64749984 | None:intergenic |
| TGAGATTCGGGTCATGGGTA+TGG | 0.497946 | 4_1:+64749944 | None:intergenic |
| GGGTATGGTGGTGGGTCGGA+AGG | 0.500342 | 4_1:+64749959 | None:intergenic |
| GGCTCGAATACGCCAGCAGA+GGG | 0.500705 | 4_1:-64746574 | Msa0564160:CDS |
| CAACGACGGCGTGGTGGCGG+AGG | 0.521531 | 4_1:-64749886 | Msa0564160:CDS |
| TCGAATACGCCAGCAGAGGG+GGG | 0.524687 | 4_1:-64746571 | Msa0564160:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 4_1:+64749772 | None:intergenic |
| CGGAAGGATAGTGAAGGAGG+AGG | 0.530534 | 4_1:+64749975 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 4_1:+64749939 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 4_1:-64746622 | Msa0564160:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 4_1:-64749846 | Msa0564160:CDS |
| CGAATACGCCAGCAGAGGGG+GGG | 0.536867 | 4_1:-64746570 | Msa0564160:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 4_1:-64749770 | Msa0564160:CDS |
| CTTAGGGCCACCTTCAACGA+CGG | 0.540629 | 4_1:-64749900 | Msa0564160:CDS |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 4_1:+64749734 | None:intergenic |
| TCATGGGTATGGTGGTGGGT+CGG | 0.552227 | 4_1:+64749955 | None:intergenic |
| CGGCTCGAATACGCCAGCAG+AGG | 0.554435 | 4_1:-64746575 | Msa0564160:CDS |
| CACCTTCAACGACGGCGTGG+TGG | 0.555945 | 4_1:-64749892 | Msa0564160:CDS |
| GTTCAAATTGTATGATGCAA+AGG | 0.560730 | 4_1:+64750096 | None:intergenic |
| GGTCGGAAGGATAGTGAAGG+AGG | 0.561939 | 4_1:+64749972 | None:intergenic |
| ACGGCGTGGTGGCGGAGGAA+CGG | 0.572751 | 4_1:-64749881 | Msa0564160:CDS |
| TTTATTATAATCACTCCACT+TGG | 0.582304 | 4_1:-64746340 | Msa0564160:three_prime_UTR |
| TACTCTTCGACCCGATCCGG+TGG | 0.585008 | 4_1:+64749759 | None:intergenic |
| CACCACGCCGTCGTTGAAGG+TGG | 0.586929 | 4_1:+64749893 | None:intergenic |
| AGGGTGAATGGAAATCTCGT+TGG | 0.598384 | 4_1:-64746671 | Msa0564160:CDS |
| TATTAGTCGAGTGAACAAAA+GGG | 0.598414 | 4_1:-64746690 | Msa0564160:intron |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 4_1:-64746628 | Msa0564160:CDS |
| TACTGCTGAGAATACATCAT+GGG | 0.603387 | 4_1:-64746598 | Msa0564160:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 4_1:-64749730 | Msa0564160:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 4_1:-64749668 | Msa0564160:CDS |
| CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | 4_1:-64746654 | Msa0564160:CDS |
| TGAAGCGATGATCGCTTCCG+GGG | 0.612356 | 4_1:+64750012 | None:intergenic |
| GATTCGGGTCATGGGTATGG+TGG | 0.612358 | 4_1:+64749947 | None:intergenic |
| TGTTACGGCTTAACAATCCC+CGG | 0.613978 | 4_1:-64750029 | Msa0564160:CDS |
| GCTCGAATACGCCAGCAGAG+GGG | 0.614172 | 4_1:-64746573 | Msa0564160:CDS |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | 4_1:-64749669 | Msa0564160:CDS |
| GGTGGCCCTAAGCTTTGGGA+AGG | 0.630171 | 4_1:+64749911 | None:intergenic |
| CCCCAGAAAACAAAACCAAG+TGG | 0.632711 | 4_1:+64746325 | None:intergenic |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 4_1:-64749775 | Msa0564160:CDS |
| GTGGGTCGGAAGGATAGTGA+AGG | 0.635542 | 4_1:+64749969 | None:intergenic |
| TGCTGAGAATACATCATGGG+CGG | 0.640756 | 4_1:-64746595 | Msa0564160:CDS |
| GGCCACCTTCAACGACGGCG+TGG | 0.650649 | 4_1:-64749895 | Msa0564160:CDS |
| ATACTGCTGAGAATACATCA+TGG | 0.656620 | 4_1:-64746599 | Msa0564160:CDS |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 4_1:-64749698 | Msa0564160:CDS |
| ATTATACACATAGAGAACAA+AGG | 0.681965 | 4_1:+64746530 | None:intergenic |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 4_1:-64749790 | Msa0564160:CDS |
| GGGTCGAAGAGTATACCAAG+AGG | 0.760271 | 4_1:-64749749 | Msa0564160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGATTTTTTTTCTTA+TGG | - | chr4_1:64746883-64746902 | Msa0564160:intron | 10.0% |
| !!! | AATTTGATTTTTTTTCTTAT+GGG | - | chr4_1:64746884-64746903 | Msa0564160:intron | 10.0% |
| !! | GTTATTAATTATTATTTGTT+AGG | - | chr4_1:64747481-64747500 | Msa0564160:intron | 10.0% |
| !! | ATTATAATGAAATAAAAAAC+AGG | - | chr4_1:64748743-64748762 | Msa0564160:intron | 10.0% |
| !! | AGAAAAAATATAATTGATTA+TGG | + | chr4_1:64748860-64748879 | None:intergenic | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | - | chr4_1:64748860-64748879 | Msa0564160:intron | 10.0% |
| !!! | ATTTTTATTTTTCATTGAAT+AGG | - | chr4_1:64749668-64749687 | Msa0564160:CDS | 10.0% |
| !!! | ATTTGATTTTTTTTCTTATG+GGG | - | chr4_1:64746885-64746904 | Msa0564160:intron | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | - | chr4_1:64746946-64746965 | Msa0564160:intron | 15.0% |
| !! | ATTTGATTCATATATACTAT+CGG | + | chr4_1:64747111-64747130 | None:intergenic | 15.0% |
| !!! | TTGTTAAGTTATATCATTTT+TGG | - | chr4_1:64747134-64747153 | Msa0564160:intron | 15.0% |
| !! | TTGCTTAAAAATATCTTATA+TGG | - | chr4_1:64747808-64747827 | Msa0564160:intron | 15.0% |
| !!! | CAGTTTTTTGTAATAAAAAA+TGG | + | chr4_1:64748594-64748613 | None:intergenic | 15.0% |
| !! | TTACTTTGATTCTTATTAAA+AGG | + | chr4_1:64748648-64748667 | None:intergenic | 15.0% |
| !!! | TTGTTTAATTAGTACATTTT+AGG | - | chr4_1:64748682-64748701 | Msa0564160:intron | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | + | chr4_1:64748855-64748874 | None:intergenic | 15.0% |
| !! | AAAATATAATTGATTATGGA+AGG | + | chr4_1:64748856-64748875 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr4_1:64749187-64749206 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr4_1:64749186-64749205 | Msa0564160:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr4_1:64749210-64749229 | Msa0564160:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr4_1:64749313-64749332 | Msa0564160:intron | 15.0% |
| !! | ACTTGTTTAGAAAAAAAAAA+TGG | - | chr4_1:64750050-64750069 | Msa0564160:exon | 15.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | - | chr4_1:64747008-64747027 | Msa0564160:intron | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | - | chr4_1:64747036-64747055 | Msa0564160:intron | 20.0% |
| !!! | TTTTTGAACTGATATATGAT+TGG | - | chr4_1:64747061-64747080 | Msa0564160:intron | 20.0% |
| !! | CAGCTTAATTAAATACTTAA+AGG | - | chr4_1:64747162-64747181 | Msa0564160:intron | 20.0% |
| !!! | GTTTAACATCATTTTATTGT+TGG | + | chr4_1:64747234-64747253 | None:intergenic | 20.0% |
| !!! | ATGTTAAAATTAGTTTTGCT+TGG | - | chr4_1:64747838-64747857 | Msa0564160:intron | 20.0% |
| !!! | TGTTAAAATTAGTTTTGCTT+GGG | - | chr4_1:64747839-64747858 | Msa0564160:intron | 20.0% |
| !! | TTACAATTTATCAATCTGTT+CGG | - | chr4_1:64748068-64748087 | Msa0564160:intron | 20.0% |
| !! | GAACAAATATATATCAGAAT+TGG | - | chr4_1:64748383-64748402 | Msa0564160:intron | 20.0% |
| !!! | AGTTGTTTTAAATGTTAAGT+TGG | - | chr4_1:64749047-64749066 | Msa0564160:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr4_1:64749196-64749215 | None:intergenic | 20.0% |
| !! | TTTAAACTAATCACAGAATT+CGG | - | chr4_1:64749371-64749390 | Msa0564160:intron | 20.0% |
| !! | TTCTAAACAAGTAAACTATA+TGG | + | chr4_1:64750042-64750061 | None:intergenic | 20.0% |
| ! | GATTATGTATGATAGAGATA+TGG | - | chr4_1:64746777-64746796 | Msa0564160:intron | 25.0% |
| ! | TATATACTATCGGTGTAAAA+AGG | + | chr4_1:64747101-64747120 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | - | chr4_1:64747287-64747306 | Msa0564160:intron | 25.0% |
| !!! | ATATTTTTTCTCCCTTTTTG+AGG | - | chr4_1:64747504-64747523 | Msa0564160:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | + | chr4_1:64747518-64747537 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | + | chr4_1:64747519-64747538 | None:intergenic | 25.0% |
| ! | AAAAGCTTCTCAAACAAAAA+AGG | + | chr4_1:64747603-64747622 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | - | chr4_1:64747602-64747621 | Msa0564160:intron | 25.0% |
| ! | TACCATGCAAAATCAATTTA+AGG | + | chr4_1:64747692-64747711 | None:intergenic | 25.0% |
| ! | TCAATTATTAATGTGAGCTA+TGG | + | chr4_1:64748012-64748031 | None:intergenic | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | - | chr4_1:64748018-64748037 | Msa0564160:intron | 25.0% |
| !! | ATAAATTGTAAGCTTTTCAG+GGG | + | chr4_1:64748059-64748078 | None:intergenic | 25.0% |
| !! | GATAAATTGTAAGCTTTTCA+GGG | + | chr4_1:64748060-64748079 | None:intergenic | 25.0% |
| !! | TGATAAATTGTAAGCTTTTC+AGG | + | chr4_1:64748061-64748080 | None:intergenic | 25.0% |
| ! | TACAATTTATCAATCTGTTC+GGG | - | chr4_1:64748069-64748088 | Msa0564160:intron | 25.0% |
| !!! | TGTGGTTTTATCATCATTTA+AGG | - | chr4_1:64748196-64748215 | Msa0564160:intron | 25.0% |
| !!! | AAGTTATTTTCCTACTGATT+TGG | - | chr4_1:64748351-64748370 | Msa0564160:intron | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | - | chr4_1:64748518-64748537 | Msa0564160:intron | 25.0% |
| ! | AATGATTAAGAGAAAGTGAA+TGG | - | chr4_1:64749153-64749172 | Msa0564160:intron | 25.0% |
| !! | GTAGTGTACAAAGTATTAAT+TGG | - | chr4_1:64749235-64749254 | Msa0564160:intron | 25.0% |
| !! | TGTACAAAGTATTAATTGGA+GGG | - | chr4_1:64749239-64749258 | Msa0564160:intron | 25.0% |
| ! | TTAAACTAATCACAGAATTC+GGG | - | chr4_1:64749372-64749391 | Msa0564160:intron | 25.0% |
| ! | ATAATATAATCCCTGAATCA+TGG | - | chr4_1:64749538-64749557 | Msa0564160:intron | 25.0% |
| ! | ATTATACACATAGAGAACAA+AGG | + | chr4_1:64749926-64749945 | None:intergenic | 25.0% |
| ! | TTTATTATAATCACTCCACT+TGG | - | chr4_1:64750113-64750132 | Msa0564160:five_prime_UTR | 25.0% |
| GTTCAAATTGTATGATGCAA+AGG | + | chr4_1:64746360-64746379 | None:intergenic | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | + | chr4_1:64746629-64746648 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | - | chr4_1:64746834-64746853 | Msa0564160:intron | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | - | chr4_1:64747252-64747271 | Msa0564160:intron | 30.0% |
| !! | TTTGTCAAGGTTCTGATTTT+TGG | - | chr4_1:64747435-64747454 | Msa0564160:intron | 30.0% |
| TTATTGTGCAACTTCTATGT+TGG | - | chr4_1:64747564-64747583 | Msa0564160:intron | 30.0% | |
| !! | GTCCTTAAATTGATTTTGCA+TGG | - | chr4_1:64747687-64747706 | Msa0564160:intron | 30.0% |
| AACACAAGAATCATCTATGA+TGG | + | chr4_1:64747748-64747767 | None:intergenic | 30.0% | |
| CCCATGCAAAATCAATTTAA+GGG | + | chr4_1:64747776-64747795 | None:intergenic | 30.0% | |
| !! | CCCTTAAATTGATTTTGCAT+GGG | - | chr4_1:64747773-64747792 | Msa0564160:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | - | chr4_1:64747689-64747708 | Msa0564160:intron | 30.0% |
| ACAATTTATCAATCTGTTCG+GGG | - | chr4_1:64748070-64748089 | Msa0564160:intron | 30.0% | |
| TTTGATTACATGACATTGTG+TGG | - | chr4_1:64748178-64748197 | Msa0564160:intron | 30.0% | |
| ATATATCAGAATTGGACTGT+AGG | - | chr4_1:64748391-64748410 | Msa0564160:intron | 30.0% | |
| TATATCAGAATTGGACTGTA+GGG | - | chr4_1:64748392-64748411 | Msa0564160:intron | 30.0% | |
| !! | AGTATCGTAATATTTTGAGG+AGG | - | chr4_1:64748415-64748434 | Msa0564160:intron | 30.0% |
| ATTTGCTTAATCATGACTTC+TGG | - | chr4_1:64748444-64748463 | Msa0564160:intron | 30.0% | |
| ATTTGAACCTAAGAGAAAGA+AGG | + | chr4_1:64748513-64748532 | None:intergenic | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | - | chr4_1:64748536-64748555 | Msa0564160:intron | 30.0% | |
| GAAATAAAAAACAGGCAACT+TGG | - | chr4_1:64748751-64748770 | Msa0564160:intron | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | + | chr4_1:64748905-64748924 | None:intergenic | 30.0% | |
| ! | TTGAAGACATTTTGCTTGTA+TGG | - | chr4_1:64748909-64748928 | Msa0564160:intron | 30.0% |
| CACACAAAAGGAAATGAATA+TGG | + | chr4_1:64748961-64748980 | None:intergenic | 30.0% | |
| TGTTGACATATACACACAAA+AGG | + | chr4_1:64748973-64748992 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr4_1:64749104-64749123 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4_1:64749105-64749124 | Msa0564160:intron | 30.0% |
| ! | GTGTACAAAGTATTAATTGG+AGG | - | chr4_1:64749238-64749257 | Msa0564160:intron | 30.0% |
| TGATTCATTACCATGATTCA+GGG | + | chr4_1:64749551-64749570 | None:intergenic | 30.0% | |
| ATGATTCATTACCATGATTC+AGG | + | chr4_1:64749552-64749571 | None:intergenic | 30.0% | |
| ! | TTTTCATTGAATAGGACCTT+TGG | - | chr4_1:64749676-64749695 | Msa0564160:CDS | 30.0% |
| TTTCATTGAATAGGACCTTT+GGG | - | chr4_1:64749677-64749696 | Msa0564160:CDS | 30.0% | |
| TTATTAGTCGAGTGAACAAA+AGG | - | chr4_1:64749762-64749781 | Msa0564160:CDS | 30.0% | |
| TATTAGTCGAGTGAACAAAA+GGG | - | chr4_1:64749763-64749782 | Msa0564160:CDS | 30.0% | |
| !!! | GCAAAGAGACACATTTTTTT+TGG | + | chr4_1:64750080-64750099 | None:intergenic | 30.0% |
| GTATACCAAGAGGTTTATTC+AGG | - | chr4_1:64746714-64746733 | Msa0564160:intron | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | - | chr4_1:64746752-64746771 | Msa0564160:intron | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | + | chr4_1:64746769-64746788 | None:intergenic | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | - | chr4_1:64746784-64746803 | Msa0564160:intron | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | - | chr4_1:64746785-64746804 | Msa0564160:intron | 35.0% | |
| !!! | TTTGTTTTGGAATTAGTGCG+TGG | - | chr4_1:64746959-64746978 | Msa0564160:intron | 35.0% |
| AAAACAATGAAGGGTCTGTT+TGG | + | chr4_1:64747399-64747418 | None:intergenic | 35.0% | |
| ! | ACCCTTCATTGTTTTCATCT+GGG | - | chr4_1:64747404-64747423 | Msa0564160:intron | 35.0% |
| TCCCAGATGAAAACAATGAA+GGG | + | chr4_1:64747408-64747427 | None:intergenic | 35.0% | |
| ! | TTCATTGTTTTCATCTGGGA+GGG | - | chr4_1:64747408-64747427 | Msa0564160:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | - | chr4_1:64747538-64747557 | Msa0564160:intron | 35.0% |
| ! | ATGATGGTGTAAAAAGAGCA+TGG | + | chr4_1:64747647-64747666 | None:intergenic | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | - | chr4_1:64747646-64747665 | Msa0564160:intron | 35.0% |
| AACACAAGAATCATCCATGA+TGG | + | chr4_1:64747663-64747682 | None:intergenic | 35.0% | |
| ATGGTATCTCAAGCAAGTTT+AGG | - | chr4_1:64747706-64747725 | Msa0564160:intron | 35.0% | |
| !! | GCCCTTAAATTGATTTTGCA+TGG | - | chr4_1:64747772-64747791 | Msa0564160:intron | 35.0% |
| CCCCATGCAAAATCAATTTA+AGG | + | chr4_1:64747777-64747796 | None:intergenic | 35.0% | |
| !! | TTATTTTGCAGTGGAAAACC+CGG | + | chr4_1:64748114-64748133 | None:intergenic | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | + | chr4_1:64748123-64748142 | None:intergenic | 35.0% |
| AAACTTTCACAGAACTGAGA+TGG | - | chr4_1:64748276-64748295 | Msa0564160:intron | 35.0% | |
| CCTAAGATAACCAAATCAGT+AGG | + | chr4_1:64748364-64748383 | None:intergenic | 35.0% | |
| !! | CCTACTGATTTGGTTATCTT+AGG | - | chr4_1:64748361-64748380 | Msa0564160:intron | 35.0% |
| !!! | GGGAGTATCGTAATATTTTG+AGG | - | chr4_1:64748412-64748431 | Msa0564160:intron | 35.0% |
| !! | TTCTGGTTCCTGATATTCAT+CGG | - | chr4_1:64748461-64748480 | Msa0564160:intron | 35.0% |
| !! | AGTACATTTTAGGTGTGCTT+TGG | - | chr4_1:64748692-64748711 | Msa0564160:intron | 35.0% |
| AAAAACAGGCAACTTGGTTT+AGG | - | chr4_1:64748757-64748776 | Msa0564160:intron | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | - | chr4_1:64748758-64748777 | Msa0564160:intron | 35.0% | |
| !! | GTGTAACTGACTTACGTTTT+GGG | - | chr4_1:64748780-64748799 | Msa0564160:intron | 35.0% |
| !! | AGTAACTTGTTCAGTGTTTG+TGG | + | chr4_1:64749013-64749032 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr4_1:64749303-64749322 | Msa0564160:intron | 35.0% |
| ATCATGCCTTCAAAAGAGAT+AGG | - | chr4_1:64749567-64749586 | Msa0564160:intron | 35.0% | |
| TCATGCCTTCAAAAGAGATA+GGG | - | chr4_1:64749568-64749587 | Msa0564160:intron | 35.0% | |
| ! | AATGTCCCTATCTCTTTTGA+AGG | + | chr4_1:64749576-64749595 | None:intergenic | 35.0% |
| TTCATTGAATAGGACCTTTG+GGG | - | chr4_1:64749678-64749697 | Msa0564160:CDS | 35.0% | |
| ATACTGCTGAGAATACATCA+TGG | - | chr4_1:64749854-64749873 | Msa0564160:CDS | 35.0% | |
| TACTGCTGAGAATACATCAT+GGG | - | chr4_1:64749855-64749874 | Msa0564160:CDS | 35.0% | |
| !! | ACTTGCAAGAAAGTATCACC+CGG | - | chr4_1:64746663-64746682 | Msa0564160:CDS | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | - | chr4_1:64747403-64747422 | Msa0564160:intron | 40.0% |
| CTCCCAGATGAAAACAATGA+AGG | + | chr4_1:64747409-64747428 | None:intergenic | 40.0% | |
| ! | CTTCATTGTTTTCATCTGGG+AGG | - | chr4_1:64747407-64747426 | Msa0564160:intron | 40.0% |
| GTAGAGCTTATGACTGAAAC+CGG | - | chr4_1:64748092-64748111 | Msa0564160:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | - | chr4_1:64748093-64748112 | Msa0564160:intron | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | - | chr4_1:64748213-64748232 | Msa0564160:intron | 40.0% | |
| !!! | ATTTTGGCTCAGCCAAGATA+AGG | + | chr4_1:64748228-64748247 | None:intergenic | 40.0% |
| CTCAGTTCTGTGAAAGTTTC+AGG | + | chr4_1:64748275-64748294 | None:intergenic | 40.0% | |
| GAAAGAAGGAGATAGCACAA+AGG | + | chr4_1:64748499-64748518 | None:intergenic | 40.0% | |
| GCTATCTCCTTCTTTCTCTT+AGG | - | chr4_1:64748503-64748522 | Msa0564160:intron | 40.0% | |
| !! | GGTGTAACTGACTTACGTTT+TGG | - | chr4_1:64748779-64748798 | Msa0564160:intron | 40.0% |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | + | chr4_1:64749010-64749029 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_1:64749100-64749119 | None:intergenic | 40.0% |
| !!! | AGCGACACTCATTTTGAAAC+GGG | - | chr4_1:64749304-64749323 | Msa0564160:intron | 40.0% |
| AGTCGATTATAGAACGAGTC+AGG | - | chr4_1:64749426-64749445 | Msa0564160:intron | 40.0% | |
| TCATTGAATAGGACCTTTGG+GGG | - | chr4_1:64749679-64749698 | Msa0564160:CDS | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | + | chr4_1:64749825-64749844 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | - | chr4_1:64749825-64749844 | Msa0564160:CDS | 40.0% | |
| AAGAAGTGATAGCAAGGTCA+TGG | - | chr4_1:64749831-64749850 | Msa0564160:CDS | 40.0% | |
| TGTTACGGCTTAACAATCCC+CGG | - | chr4_1:64746424-64746443 | Msa0564160:three_prime_UTR | 45.0% | |
| AGGATGACCCGAATGAGATT+CGG | + | chr4_1:64746525-64746544 | None:intergenic | 45.0% | |
| GTCATCCTTCCCAAAGCTTA+GGG | - | chr4_1:64746537-64746556 | Msa0564160:three_prime_UTR | 45.0% | |
| ACCAGAATCCGGTTCATTGA+TGG | - | chr4_1:64746618-64746637 | Msa0564160:CDS | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | + | chr4_1:64746622-64746641 | None:intergenic | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | + | chr4_1:64746722-64746741 | None:intergenic | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | - | chr4_1:64746720-64746739 | Msa0564160:intron | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | - | chr4_1:64746755-64746774 | Msa0564160:intron | 45.0% | |
| !! | CTCAAGCACCGATGAATATC+AGG | + | chr4_1:64748472-64748491 | None:intergenic | 45.0% |
| ! | CTGATATTCATCGGTGCTTG+AGG | - | chr4_1:64748470-64748489 | Msa0564160:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_1:64749342-64749361 | None:intergenic | 45.0% |
| !!! | GCGACACTCATTTTGAAACG+GGG | - | chr4_1:64749341-64749360 | Msa0564160:intron | 45.0% |
| CATTGAATAGGACCTTTGGG+GGG | - | chr4_1:64749680-64749699 | Msa0564160:CDS | 45.0% | |
| CGAGTGAACAAAAGGGTGAA+TGG | - | chr4_1:64749770-64749789 | Msa0564160:CDS | 45.0% | |
| AGGGTGAATGGAAATCTCGT+TGG | - | chr4_1:64749782-64749801 | Msa0564160:CDS | 45.0% | |
| TGCTGAGAATACATCATGGG+CGG | - | chr4_1:64749858-64749877 | Msa0564160:CDS | 45.0% | |
| !!! | TTAATAAATTTTCATAATTT+TGG | + | chr4_1:64748244-64748263 | None:intergenic | 5.0% |
| !!! | TAATAAATTATAAATTGTTT+TGG | + | chr4_1:64748724-64748743 | None:intergenic | 5.0% |
| !! | TATAATAAAATTAAACAAAA+TGG | + | chr4_1:64750102-64750121 | None:intergenic | 5.0% |
| GAGAGAGAGATGCGCTGTTA+CGG | - | chr4_1:64746409-64746428 | Msa0564160:three_prime_UTR | 50.0% | |
| ATGAAGCGATGATCGCTTCC+GGG | + | chr4_1:64746445-64746464 | None:intergenic | 50.0% | |
| GATGAAGCGATGATCGCTTC+CGG | + | chr4_1:64746446-64746465 | None:intergenic | 50.0% | |
| AGTGAAGGAGGAGGTAGTGT+TGG | + | chr4_1:64746472-64746491 | None:intergenic | 50.0% | |
| TGAGATTCGGGTCATGGGTA+TGG | + | chr4_1:64746512-64746531 | None:intergenic | 50.0% | |
| CCGAATGAGATTCGGGTCAT+GGG | + | chr4_1:64746517-64746536 | None:intergenic | 50.0% | |
| CCCATGACCCGAATCTCATT+CGG | - | chr4_1:64746514-64746533 | Msa0564160:three_prime_UTR | 50.0% | |
| CCATGACCCGAATCTCATTC+GGG | - | chr4_1:64746515-64746534 | Msa0564160:three_prime_UTR | 50.0% | |
| GGATGACCCGAATGAGATTC+GGG | + | chr4_1:64746524-64746543 | None:intergenic | 50.0% | |
| GGTCATCCTTCCCAAAGCTT+AGG | - | chr4_1:64746536-64746555 | Msa0564160:three_prime_UTR | 50.0% | |
| TGAAGGTGGCCCTAAGCTTT+GGG | + | chr4_1:64746549-64746568 | None:intergenic | 50.0% | |
| TTGAAGGTGGCCCTAAGCTT+TGG | + | chr4_1:64746550-64746569 | None:intergenic | 50.0% | |
| ACGGAGCTTCTACGATCTTC+TGG | - | chr4_1:64746591-64746610 | Msa0564160:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | - | chr4_1:64746592-64746611 | Msa0564160:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | - | chr4_1:64746607-64746626 | Msa0564160:CDS | 50.0% | |
| GTATACTCTTCGACCCGATC+CGG | + | chr4_1:64746700-64746719 | None:intergenic | 50.0% | |
| ! | GGGTCGAAGAGTATACCAAG+AGG | - | chr4_1:64746704-64746723 | Msa0564160:intron | 50.0% |
| GAGGTTTATTCAGGTGCAGG+AGG | - | chr4_1:64746723-64746742 | Msa0564160:intron | 50.0% | |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | - | chr4_1:64747422-64747441 | Msa0564160:intron | 50.0% |
| TTGGCTCAGCCAAGATAAGG+AGG | + | chr4_1:64748225-64748244 | None:intergenic | 50.0% | |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | + | chr4_1:64749001-64749020 | None:intergenic | 50.0% |
| ! | AATAGGACCTTTGGGGGGAT+TGG | - | chr4_1:64749685-64749704 | Msa0564160:CDS | 50.0% |
| CGTTGGCAATCTCAACTCGA+TGG | - | chr4_1:64749799-64749818 | Msa0564160:CDS | 50.0% | |
| TGAAGCGATGATCGCTTCCG+GGG | + | chr4_1:64746444-64746463 | None:intergenic | 55.0% | |
| CGGAAGGATAGTGAAGGAGG+AGG | + | chr4_1:64746481-64746500 | None:intergenic | 55.0% | |
| GGTCGGAAGGATAGTGAAGG+AGG | + | chr4_1:64746484-64746503 | None:intergenic | 55.0% | |
| GTGGGTCGGAAGGATAGTGA+AGG | + | chr4_1:64746487-64746506 | None:intergenic | 55.0% | |
| !! | TCATGGGTATGGTGGTGGGT+CGG | + | chr4_1:64746501-64746520 | None:intergenic | 55.0% |
| GATTCGGGTCATGGGTATGG+TGG | + | chr4_1:64746509-64746528 | None:intergenic | 55.0% | |
| CCCGAATGAGATTCGGGTCA+TGG | + | chr4_1:64746518-64746537 | None:intergenic | 55.0% | |
| CTTAGGGCCACCTTCAACGA+CGG | - | chr4_1:64746553-64746572 | Msa0564160:exon | 55.0% | |
| TCACCCGGATGTTTCACCAC+CGG | - | chr4_1:64746678-64746697 | Msa0564160:CDS | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | + | chr4_1:64746684-64746703 | None:intergenic | 55.0% | |
| CGATCCGGTGGTGAAACATC+CGG | + | chr4_1:64746685-64746704 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | - | chr4_1:64746683-64746702 | Msa0564160:CDS | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | - | chr4_1:64746684-64746703 | Msa0564160:CDS | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | + | chr4_1:64749002-64749021 | None:intergenic | 55.0% |
| CTTCTAGCCAATCCCCCCAA+AGG | + | chr4_1:64749695-64749714 | None:intergenic | 55.0% | |
| CGGGTCATGGGTATGGTGGT+GGG | + | chr4_1:64746505-64746524 | None:intergenic | 60.0% | |
| TCGGGTCATGGGTATGGTGG+TGG | + | chr4_1:64746506-64746525 | None:intergenic | 60.0% | |
| !! | GGTGGCCCTAAGCTTTGGGA+AGG | + | chr4_1:64746545-64746564 | None:intergenic | 60.0% |
| TACTCTTCGACCCGATCCGG+TGG | + | chr4_1:64746697-64746716 | None:intergenic | 60.0% | |
| GGCTCGAATACGCCAGCAGA+GGG | - | chr4_1:64749879-64749898 | Msa0564160:CDS | 60.0% | |
| GCTCGAATACGCCAGCAGAG+GGG | - | chr4_1:64749880-64749899 | Msa0564160:CDS | 60.0% | |
| CTCGAATACGCCAGCAGAGG+GGG | - | chr4_1:64749881-64749900 | Msa0564160:CDS | 60.0% | |
| TCGAATACGCCAGCAGAGGG+GGG | - | chr4_1:64749882-64749901 | Msa0564160:CDS | 60.0% | |
| !! | GGGTATGGTGGTGGGTCGGA+AGG | + | chr4_1:64746497-64746516 | None:intergenic | 65.0% |
| CACCACGCCGTCGTTGAAGG+TGG | + | chr4_1:64746563-64746582 | None:intergenic | 65.0% | |
| CACCTTCAACGACGGCGTGG+TGG | - | chr4_1:64746561-64746580 | Msa0564160:exon | 65.0% | |
| CTTCAACGACGGCGTGGTGG+CGG | - | chr4_1:64746564-64746583 | Msa0564160:CDS | 65.0% | |
| CGGCTCGAATACGCCAGCAG+AGG | - | chr4_1:64749878-64749897 | Msa0564160:CDS | 65.0% | |
| CGAATACGCCAGCAGAGGGG+GGG | - | chr4_1:64749883-64749902 | Msa0564160:CDS | 65.0% | |
| GTCACAATCCCCCCCTCTGC+TGG | + | chr4_1:64749894-64749913 | None:intergenic | 65.0% | |
| GGCCACCTTCAACGACGGCG+TGG | - | chr4_1:64746558-64746577 | Msa0564160:exon | 70.0% | |
| CGCCACCACGCCGTCGTTGA+AGG | + | chr4_1:64746566-64746585 | None:intergenic | 70.0% | |
| !! | ACGGCGTGGTGGCGGAGGAA+CGG | - | chr4_1:64746572-64746591 | Msa0564160:CDS | 70.0% |
| !! | CAACGACGGCGTGGTGGCGG+AGG | - | chr4_1:64746567-64746586 | Msa0564160:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64746328 | 64750147 | 64746328 | ID=Msa0564160;Name=Msa0564160 |
| chr4_1 | mRNA | 64746328 | 64750147 | 64746328 | ID=Msa0564160-mRNA-1;Parent=Msa0564160;Name=Msa0564160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=90|1|1|1|1|1|2|235|193 |
| chr4_1 | exon | 64746328 | 64746706 | 64746328 | ID=Msa0564160-mRNA-1:exon:20743;Parent=Msa0564160-mRNA-1 |
| chr4_1 | exon | 64749620 | 64750147 | 64749620 | ID=Msa0564160-mRNA-1:exon:20742;Parent=Msa0564160-mRNA-1 |
| chr4_1 | five_prime_UTR | 64750058 | 64750147 | 64750058 | ID=Msa0564160-mRNA-1:five_prime_utr;Parent=Msa0564160-mRNA-1 |
| chr4_1 | CDS | 64749620 | 64750057 | 64749620 | ID=Msa0564160-mRNA-1:cds;Parent=Msa0564160-mRNA-1 |
| chr4_1 | CDS | 64746563 | 64746706 | 64746563 | ID=Msa0564160-mRNA-1:cds;Parent=Msa0564160-mRNA-1 |
| chr4_1 | three_prime_UTR | 64746328 | 64746562 | 64746328 | ID=Msa0564160-mRNA-1:three_prime_utr;Parent=Msa0564160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
