AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564500 MtrunA17_Chr8g0378551 97.704 479 11 0 1 479 1 479 0.0 942
Msa0564500 MtrunA17_Chr5g0426641 63.820 445 156 1 35 479 20 459 0.0 579
Msa0564500 MtrunA17_Chr1g0211371 48.667 450 228 2 26 475 12 458 1.46e-152 442
Msa0564500 MtrunA17_Chr3g0094551 48.299 441 225 2 38 478 17 454 1.33e-149 435
Msa0564500 MtrunA17_Chr5g0409251 47.619 441 229 2 28 468 18 456 1.73e-148 432
Msa0564500 MtrunA17_Chr5g0393681 47.945 438 224 3 33 469 3 437 2.71e-132 391
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564500 AT3G13620.1 60.814 467 180 2 13 479 4 467 0.0 573
Msa0564500 AT1G31830.1 48.352 455 231 3 26 479 34 485 9.32e-157 454
Msa0564500 AT1G31830.2 48.352 455 231 3 26 479 18 469 1.16e-156 454
Msa0564500 AT5G05630.1 49.099 444 224 2 26 468 38 480 1.09e-154 449
Msa0564500 AT1G31820.1 48.696 460 226 3 29 481 25 481 1.39e-152 443
Msa0564500 AT3G19553.1 51.404 463 212 5 27 479 9 468 5.96e-148 431

Find 79 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGGTGGGTTTGTTATT+TGG 0.119761 4_1:+65161092 Msa0564500:CDS
AGTGCTTTCTTAACATTCTT+AGG 0.147342 4_1:+65162117 Msa0564500:CDS
CTCATCTACTTTGAGGTATC+TGG 0.167645 4_1:+65160935 Msa0564500:CDS
TTGAATCTTCTTCTTCTCTT+TGG 0.199488 4_1:-65160862 None:intergenic
CTGGGAATTGGTTGAAATAT+TGG 0.212399 4_1:+65161686 Msa0564500:CDS
TCTGGGATACTCCAAATAAA+TGG 0.218421 4_1:-65161031 None:intergenic
AAGGTTCCACTTGGATTCTT+TGG 0.223454 4_1:+65162015 Msa0564500:CDS
TGCTGGATTGTTAACTTGTT+TGG 0.231778 4_1:+65161567 Msa0564500:CDS
ACTAGCCACATATACAATTT+TGG 0.238044 4_1:-65162097 None:intergenic
TCTGCAGTTAACAGAGCTTC+TGG 0.247712 4_1:-65161049 None:intergenic
AAATGGTGGGTTTGTTATTT+GGG 0.257640 4_1:+65161093 Msa0564500:CDS
CCAGCAAATAACAAAGCTTT+TGG 0.261342 4_1:-65161550 None:intergenic
TTGAAATATTGGATGGAAAT+TGG 0.269249 4_1:+65161697 Msa0564500:CDS
CAGTGGAGTAGGAGATAAAT+TGG 0.283001 4_1:+65162194 Msa0564500:CDS
GGTTATACTGCAGTTGGTTT+AGG 0.285281 4_1:+65161328 Msa0564500:CDS
CCAAAAGCTTTGTTATTTGC+TGG 0.287356 4_1:+65161550 Msa0564500:CDS
ATTTGGGCTAATGAAGCTTT+TGG 0.289227 4_1:+65161109 Msa0564500:CDS
TACAATGAAAAGACCTTATA+AGG 0.296408 4_1:+65161996 Msa0564500:CDS
AATCCAAGTGGAACCTTATA+AGG 0.306194 4_1:-65162009 None:intergenic
TGCCACTTGATCAAGAAGTT+TGG 0.318408 4_1:+65161626 Msa0564500:CDS
CTGGTTTGATTGCTGGGAAT+TGG 0.320667 4_1:+65161674 Msa0564500:CDS
GGGTTATATAATTCCTTTGT+TGG 0.320719 4_1:+65161588 Msa0564500:CDS
AGATAATCTATACATAGAAT+TGG 0.327586 4_1:-65161199 None:intergenic
GTATAGTTTAGGTATGCTTT+TGG 0.330507 4_1:+65161936 Msa0564500:CDS
CCTAGTAGATGGTTAAGTTT+AGG 0.331119 4_1:+65161409 Msa0564500:CDS
GCCACTTGATCAAGAAGTTT+GGG 0.332993 4_1:+65161627 Msa0564500:CDS
CATGTGGCTGGTTTGATTGC+TGG 0.333123 4_1:+65161667 Msa0564500:CDS
GCTGGATTGTTAACTTGTTT+GGG 0.336043 4_1:+65161568 Msa0564500:CDS
AATCTTTCTCATCTACTTTG+AGG 0.359694 4_1:+65160928 Msa0564500:CDS
GAGGTATCTGGTGGACCTTA+TGG 0.387052 4_1:+65160947 Msa0564500:CDS
ATTCCTTTGTTGGCTACTAC+TGG 0.396954 4_1:+65161598 Msa0564500:CDS
ATAACAAACCCACCATTTCC+AGG 0.406978 4_1:-65161088 None:intergenic
TGGATTGAGTTCAGTGGAGT+AGG 0.412536 4_1:+65162183 Msa0564500:CDS
GTGCTTTCTTAACATTCTTA+GGG 0.418391 4_1:+65162118 Msa0564500:CDS
ATGTGGCTGGTTTGATTGCT+GGG 0.424967 4_1:+65161668 Msa0564500:CDS
TATTCTGGTTTAGCTATAGT+TGG 0.426561 4_1:+65161307 Msa0564500:CDS
ACATTAACACAAAGGGCAAA+AGG 0.443673 4_1:-65161360 None:intergenic
ACTGTTGCTTCTTCACCATA+AGG 0.446104 4_1:-65160962 None:intergenic
CTGGGATACTCCAAATAAAT+GGG 0.448636 4_1:-65161030 None:intergenic
CTGCAGTTAACAGAGCTTCT+GGG 0.454168 4_1:-65161048 None:intergenic
AAGTAGATGAGAAAGATTAG+AGG 0.454596 4_1:-65160923 None:intergenic
CTAAAATTGATCCTAGTAGA+TGG 0.462759 4_1:+65161398 Msa0564500:CDS
GCTACAGCATTCCCTGGAAA+TGG 0.470404 4_1:+65161076 Msa0564500:CDS
GATAATCTATACATAGAATT+GGG 0.472908 4_1:-65161198 None:intergenic
ATCAAAGACATTAACACAAA+GGG 0.476966 4_1:-65161367 None:intergenic
CCTAAACTTAACCATCTACT+AGG 0.478755 4_1:-65161409 None:intergenic
CAAAGTTGTTTAACACACCT+TGG 0.480563 4_1:+65161830 Msa0564500:CDS
ATGGTTAAGTTTAGGACAAG+AGG 0.482198 4_1:+65161417 Msa0564500:CDS
TGAATCTTTGCAAGTCTAAG+AGG 0.493630 4_1:+65162160 Msa0564500:CDS
ATCAAGAAGTTTGGGTTGGT+GGG 0.495054 4_1:+65161635 Msa0564500:CDS
GATCAAGAAGTTTGGGTTGG+TGG 0.497496 4_1:+65161634 Msa0564500:CDS
GGTAAACCTGAAGACAAAAC+AGG 0.502863 4_1:-65161235 None:intergenic
CATTAACACAAAGGGCAAAA+GGG 0.503892 4_1:-65161359 None:intergenic
GATAGTGCTAGCACTTTAGC+TGG 0.508343 4_1:+65161499 Msa0564500:CDS
ATAGTTGGTTATACTGCAGT+TGG 0.509080 4_1:+65161322 Msa0564500:CDS
GTTGTTTAACACACCTTGGA+TGG 0.512626 4_1:+65161834 Msa0564500:CDS
GAAGCAACAGTAAGTGCTGC+AGG 0.513783 4_1:+65160974 Msa0564500:CDS
AGTAGATGAGAAAGATTAGA+GGG 0.514522 4_1:-65160922 None:intergenic
TGGTTAAGTTTAGGACAAGA+GGG 0.515356 4_1:+65161418 Msa0564500:CDS
AGACCTTATAAGGTTCCACT+TGG 0.526727 4_1:+65162006 Msa0564500:CDS
TGCTACCAAAATTGTATATG+TGG 0.535048 4_1:+65162092 Msa0564500:CDS
ACATAAACCAACAGCACAGA+TGG 0.538480 4_1:-65162060 None:intergenic
CTTGATCAAGAAGTTTGGGT+TGG 0.540498 4_1:+65161631 Msa0564500:CDS
TTGCTTCTTTCCTTAAGTTG+AGG 0.541531 4_1:+65161962 Msa0564500:CDS
ATCTACTTTGAGGTATCTGG+TGG 0.545094 4_1:+65160938 Msa0564500:CDS
AAGTTTAGGACAAGAGGGTG+TGG 0.548272 4_1:+65161423 Msa0564500:CDS
ACCCAAACTTCTTGATCAAG+TGG 0.548962 4_1:-65161628 None:intergenic
ACAGCATTCCCTGGAAATGG+TGG 0.558001 4_1:+65161079 Msa0564500:CDS
ATTTCAACAATAATATCACT+TGG 0.558408 4_1:+65161865 Msa0564500:CDS
GAATTAGCTACAGCATTCCC+TGG 0.558740 4_1:+65161070 Msa0564500:CDS
TAACAAACCCACCATTTCCA+GGG 0.582040 4_1:-65161087 None:intergenic
GAAATCAAAATTGCCATCCA+AGG 0.585439 4_1:-65161847 None:intergenic
ATCTTTGCAAGTCTAAGAGG+TGG 0.589872 4_1:+65162163 Msa0564500:CDS
CAGCATTCCCTGGAAATGGT+GGG 0.590354 4_1:+65161080 Msa0564500:CDS
GAATTGGTTGAAATATTGGA+TGG 0.593097 4_1:+65161690 Msa0564500:CDS
ATTAAACCAAAGAATCCAAG+TGG 0.616942 4_1:-65162021 None:intergenic
AATCAAAGACATTAACACAA+AGG 0.619734 4_1:-65161368 None:intergenic
AAGAGGTGGATTGAGTTCAG+TGG 0.650160 4_1:+65162177 Msa0564500:CDS
GCACCAGTAGTAGCCAACAA+AGG 0.678385 4_1:-65161601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAATACTATTTTT+TGG + chr4_1:65161461-65161480 Msa0564500:CDS 10.0%
!!! TTTTTTTCAATACTATTTTT+TGG + chr4_1:65161461-65161480 Msa0564500:CDS 10.0%
!!! TTATAATTTTCCCATTTATT+TGG + chr4_1:65161020-65161039 Msa0564500:CDS 15.0%
!!! GTTAATTTTTTGTATAGTTT+AGG + chr4_1:65161925-65161944 Msa0564500:CDS 15.0%
!!! TTATAATTTTCCCATTTATT+TGG + chr4_1:65161020-65161039 Msa0564500:CDS 15.0%
!!! GTTAATTTTTTGTATAGTTT+AGG + chr4_1:65161925-65161944 Msa0564500:CDS 15.0%
!!! TTTTTTTGTGATTTGGTTTT+GGG - chr4_1:65160890-65160909 None:intergenic 20.0%
!! GATAATCTATACATAGAATT+GGG - chr4_1:65161201-65161220 None:intergenic 20.0%
!! AGATAATCTATACATAGAAT+TGG - chr4_1:65161202-65161221 None:intergenic 20.0%
!!! TTGTCTTTTTTGAATTATTC+TGG + chr4_1:65161292-65161311 Msa0564500:CDS 20.0%
!!! TTTTTTGGAACTTGAATTTT+TGG + chr4_1:65161476-65161495 Msa0564500:CDS 20.0%
!!! TTTTTGGAACTTGAATTTTT+GGG + chr4_1:65161477-65161496 Msa0564500:CDS 20.0%
!! ATTTCAACAATAATATCACT+TGG + chr4_1:65161865-65161884 Msa0564500:CDS 20.0%
!!! TTTTTTTGTGATTTGGTTTT+GGG - chr4_1:65160890-65160909 None:intergenic 20.0%
!! GATAATCTATACATAGAATT+GGG - chr4_1:65161201-65161220 None:intergenic 20.0%
!! AGATAATCTATACATAGAAT+TGG - chr4_1:65161202-65161221 None:intergenic 20.0%
!!! TTGTCTTTTTTGAATTATTC+TGG + chr4_1:65161292-65161311 Msa0564500:CDS 20.0%
!!! TTTTTTGGAACTTGAATTTT+TGG + chr4_1:65161476-65161495 Msa0564500:CDS 20.0%
!!! TTTTTGGAACTTGAATTTTT+GGG + chr4_1:65161477-65161496 Msa0564500:CDS 20.0%
!! ATTTCAACAATAATATCACT+TGG + chr4_1:65161865-65161884 Msa0564500:CDS 20.0%
!!! TTTTTTGTGATTTGGTTTTG+GGG - chr4_1:65160889-65160908 None:intergenic 25.0%
!!! CTTTTTTTGTGATTTGGTTT+TGG - chr4_1:65160891-65160910 None:intergenic 25.0%
! ATCAAAGACATTAACACAAA+GGG - chr4_1:65161370-65161389 None:intergenic 25.0%
! AATCAAAGACATTAACACAA+AGG - chr4_1:65161371-65161390 None:intergenic 25.0%
! TTGAAATATTGGATGGAAAT+TGG + chr4_1:65161697-65161716 Msa0564500:CDS 25.0%
! GGATTCATACCAAAAATATT+TGG + chr4_1:65161799-65161818 Msa0564500:CDS 25.0%
!! GATCTTTCACCAAATATTTT+TGG - chr4_1:65161811-65161830 None:intergenic 25.0%
!! TATAAGGTCTTTTCATTGTA+GGG - chr4_1:65161996-65162015 None:intergenic 25.0%
!! TTATAAGGTCTTTTCATTGT+AGG - chr4_1:65161997-65162016 None:intergenic 25.0%
! TACAATGAAAAGACCTTATA+AGG + chr4_1:65161996-65162015 Msa0564500:CDS 25.0%
!!! TTTTTTGTGATTTGGTTTTG+GGG - chr4_1:65160889-65160908 None:intergenic 25.0%
!!! CTTTTTTTGTGATTTGGTTT+TGG - chr4_1:65160891-65160910 None:intergenic 25.0%
! ATCAAAGACATTAACACAAA+GGG - chr4_1:65161370-65161389 None:intergenic 25.0%
! AATCAAAGACATTAACACAA+AGG - chr4_1:65161371-65161390 None:intergenic 25.0%
! TTGAAATATTGGATGGAAAT+TGG + chr4_1:65161697-65161716 Msa0564500:CDS 25.0%
! GGATTCATACCAAAAATATT+TGG + chr4_1:65161799-65161818 Msa0564500:CDS 25.0%
!! GATCTTTCACCAAATATTTT+TGG - chr4_1:65161811-65161830 None:intergenic 25.0%
!! TATAAGGTCTTTTCATTGTA+GGG - chr4_1:65161996-65162015 None:intergenic 25.0%
!! TTATAAGGTCTTTTCATTGT+AGG - chr4_1:65161997-65162016 None:intergenic 25.0%
! TACAATGAAAAGACCTTATA+AGG + chr4_1:65161996-65162015 Msa0564500:CDS 25.0%
TTGAATCTTCTTCTTCTCTT+TGG - chr4_1:65160865-65160884 None:intergenic 30.0%
!!! TGCTAGCTTTTTTTGTGATT+TGG - chr4_1:65160897-65160916 None:intergenic 30.0%
AGTAGATGAGAAAGATTAGA+GGG - chr4_1:65160925-65160944 None:intergenic 30.0%
AAGTAGATGAGAAAGATTAG+AGG - chr4_1:65160926-65160945 None:intergenic 30.0%
AATCTTTCTCATCTACTTTG+AGG + chr4_1:65160928-65160947 Msa0564500:CDS 30.0%
AATCCAAGAATTGCAAAAAG+TGG - chr4_1:65161001-65161020 None:intergenic 30.0%
!! AAATGGTGGGTTTGTTATTT+GGG + chr4_1:65161093-65161112 Msa0564500:CDS 30.0%
!! TATTCTGGTTTAGCTATAGT+TGG + chr4_1:65161307-65161326 Msa0564500:CDS 30.0%
! CATCTACTAGGATCAATTTT+AGG - chr4_1:65161400-65161419 None:intergenic 30.0%
CTAAAATTGATCCTAGTAGA+TGG + chr4_1:65161398-65161417 Msa0564500:CDS 30.0%
!! GCTTTTGGAAAAGTTTTATG+TGG - chr4_1:65161538-65161557 None:intergenic 30.0%
GGGTTATATAATTCCTTTGT+TGG + chr4_1:65161588-65161607 Msa0564500:CDS 30.0%
GAATTGGTTGAAATATTGGA+TGG + chr4_1:65161690-65161709 Msa0564500:CDS 30.0%
! GTATAGTTTAGGTATGCTTT+TGG + chr4_1:65161936-65161955 Msa0564500:CDS 30.0%
!!! GGAATTTTTTCCTCAACTTA+AGG - chr4_1:65161975-65161994 None:intergenic 30.0%
ATTAAACCAAAGAATCCAAG+TGG - chr4_1:65162024-65162043 None:intergenic 30.0%
TGCTACCAAAATTGTATATG+TGG + chr4_1:65162092-65162111 Msa0564500:CDS 30.0%
! ACTAGCCACATATACAATTT+TGG - chr4_1:65162100-65162119 None:intergenic 30.0%
AGTGCTTTCTTAACATTCTT+AGG + chr4_1:65162117-65162136 Msa0564500:CDS 30.0%
GTGCTTTCTTAACATTCTTA+GGG + chr4_1:65162118-65162137 Msa0564500:CDS 30.0%
TTGAATCTTCTTCTTCTCTT+TGG - chr4_1:65160865-65160884 None:intergenic 30.0%
!!! TGCTAGCTTTTTTTGTGATT+TGG - chr4_1:65160897-65160916 None:intergenic 30.0%
AGTAGATGAGAAAGATTAGA+GGG - chr4_1:65160925-65160944 None:intergenic 30.0%
AAGTAGATGAGAAAGATTAG+AGG - chr4_1:65160926-65160945 None:intergenic 30.0%
AATCTTTCTCATCTACTTTG+AGG + chr4_1:65160928-65160947 Msa0564500:CDS 30.0%
AATCCAAGAATTGCAAAAAG+TGG - chr4_1:65161001-65161020 None:intergenic 30.0%
!! AAATGGTGGGTTTGTTATTT+GGG + chr4_1:65161093-65161112 Msa0564500:CDS 30.0%
!! TATTCTGGTTTAGCTATAGT+TGG + chr4_1:65161307-65161326 Msa0564500:CDS 30.0%
! CATCTACTAGGATCAATTTT+AGG - chr4_1:65161400-65161419 None:intergenic 30.0%
CTAAAATTGATCCTAGTAGA+TGG + chr4_1:65161398-65161417 Msa0564500:CDS 30.0%
!! GCTTTTGGAAAAGTTTTATG+TGG - chr4_1:65161538-65161557 None:intergenic 30.0%
GGGTTATATAATTCCTTTGT+TGG + chr4_1:65161588-65161607 Msa0564500:CDS 30.0%
GAATTGGTTGAAATATTGGA+TGG + chr4_1:65161690-65161709 Msa0564500:CDS 30.0%
! GTATAGTTTAGGTATGCTTT+TGG + chr4_1:65161936-65161955 Msa0564500:CDS 30.0%
!!! GGAATTTTTTCCTCAACTTA+AGG - chr4_1:65161975-65161994 None:intergenic 30.0%
ATTAAACCAAAGAATCCAAG+TGG - chr4_1:65162024-65162043 None:intergenic 30.0%
TGCTACCAAAATTGTATATG+TGG + chr4_1:65162092-65162111 Msa0564500:CDS 30.0%
! ACTAGCCACATATACAATTT+TGG - chr4_1:65162100-65162119 None:intergenic 30.0%
AGTGCTTTCTTAACATTCTT+AGG + chr4_1:65162117-65162136 Msa0564500:CDS 30.0%
GTGCTTTCTTAACATTCTTA+GGG + chr4_1:65162118-65162137 Msa0564500:CDS 30.0%
! TTTTGTGTTGAAGAGTGAAG+GGG - chr4_1:65160818-65160837 None:intergenic 35.0%
! GTTTTGTGTTGAAGAGTGAA+GGG - chr4_1:65160819-65160838 None:intergenic 35.0%
!! AGTTTTGTGTTGAAGAGTGA+AGG - chr4_1:65160820-65160839 None:intergenic 35.0%
CTGGGATACTCCAAATAAAT+GGG - chr4_1:65161033-65161052 None:intergenic 35.0%
! TCTGGGATACTCCAAATAAA+TGG - chr4_1:65161034-65161053 None:intergenic 35.0%
!! GAAATGGTGGGTTTGTTATT+TGG + chr4_1:65161092-65161111 Msa0564500:CDS 35.0%
! ATTTGGGCTAATGAAGCTTT+TGG + chr4_1:65161109-65161128 Msa0564500:CDS 35.0%
! ATGAAGCTTTTGGTCCATTT+TGG + chr4_1:65161119-65161138 Msa0564500:CDS 35.0%
! TGAAGCTTTTGGTCCATTTT+GGG + chr4_1:65161120-65161139 Msa0564500:CDS 35.0%
!! GGCTACTGGAAATATTTTTG+TGG + chr4_1:65161154-65161173 Msa0564500:CDS 35.0%
ATAGTTGGTTATACTGCAGT+TGG + chr4_1:65161322-65161341 Msa0564500:CDS 35.0%
CATTAACACAAAGGGCAAAA+GGG - chr4_1:65161362-65161381 None:intergenic 35.0%
ACATTAACACAAAGGGCAAA+AGG - chr4_1:65161363-65161382 None:intergenic 35.0%
CCTAAACTTAACCATCTACT+AGG - chr4_1:65161412-65161431 None:intergenic 35.0%
CCTAGTAGATGGTTAAGTTT+AGG + chr4_1:65161409-65161428 Msa0564500:CDS 35.0%
! ATGGTTAAGTTTAGGACAAG+AGG + chr4_1:65161417-65161436 Msa0564500:CDS 35.0%
! TGGTTAAGTTTAGGACAAGA+GGG + chr4_1:65161418-65161437 Msa0564500:CDS 35.0%
! CCAGCAAATAACAAAGCTTT+TGG - chr4_1:65161553-65161572 None:intergenic 35.0%
!! CCAAAAGCTTTGTTATTTGC+TGG + chr4_1:65161550-65161569 Msa0564500:CDS 35.0%
!! TGCTGGATTGTTAACTTGTT+TGG + chr4_1:65161567-65161586 Msa0564500:CDS 35.0%
!! GCTGGATTGTTAACTTGTTT+GGG + chr4_1:65161568-65161587 Msa0564500:CDS 35.0%
CTGGGAATTGGTTGAAATAT+TGG + chr4_1:65161686-65161705 Msa0564500:CDS 35.0%
!!! GGTGCTGTTTTGTCAATTAT+TGG + chr4_1:65161718-65161737 Msa0564500:CDS 35.0%
! AGTGCTGCATATCAACTTTT+AGG + chr4_1:65161763-65161782 Msa0564500:CDS 35.0%
!! ACTTTTAGGTATGTCTGACT+TGG + chr4_1:65161777-65161796 Msa0564500:CDS 35.0%
!! CTTTTAGGTATGTCTGACTT+GGG + chr4_1:65161778-65161797 Msa0564500:CDS 35.0%
CAAAGTTGTTTAACACACCT+TGG + chr4_1:65161830-65161849 Msa0564500:CDS 35.0%
GAAATCAAAATTGCCATCCA+AGG - chr4_1:65161850-65161869 None:intergenic 35.0%
! TTGCTTCTTTCCTTAAGTTG+AGG + chr4_1:65161962-65161981 Msa0564500:CDS 35.0%
AATCCAAGTGGAACCTTATA+AGG - chr4_1:65162012-65162031 None:intergenic 35.0%
TGAATCTTTGCAAGTCTAAG+AGG + chr4_1:65162160-65162179 Msa0564500:CDS 35.0%
! TTTTGTGTTGAAGAGTGAAG+GGG - chr4_1:65160818-65160837 None:intergenic 35.0%
! GTTTTGTGTTGAAGAGTGAA+GGG - chr4_1:65160819-65160838 None:intergenic 35.0%
!! AGTTTTGTGTTGAAGAGTGA+AGG - chr4_1:65160820-65160839 None:intergenic 35.0%
CTGGGATACTCCAAATAAAT+GGG - chr4_1:65161033-65161052 None:intergenic 35.0%
! TCTGGGATACTCCAAATAAA+TGG - chr4_1:65161034-65161053 None:intergenic 35.0%
!! GAAATGGTGGGTTTGTTATT+TGG + chr4_1:65161092-65161111 Msa0564500:CDS 35.0%
! ATTTGGGCTAATGAAGCTTT+TGG + chr4_1:65161109-65161128 Msa0564500:CDS 35.0%
! ATGAAGCTTTTGGTCCATTT+TGG + chr4_1:65161119-65161138 Msa0564500:CDS 35.0%
! TGAAGCTTTTGGTCCATTTT+GGG + chr4_1:65161120-65161139 Msa0564500:CDS 35.0%
!! GGCTACTGGAAATATTTTTG+TGG + chr4_1:65161154-65161173 Msa0564500:CDS 35.0%
ATAGTTGGTTATACTGCAGT+TGG + chr4_1:65161322-65161341 Msa0564500:CDS 35.0%
CATTAACACAAAGGGCAAAA+GGG - chr4_1:65161362-65161381 None:intergenic 35.0%
ACATTAACACAAAGGGCAAA+AGG - chr4_1:65161363-65161382 None:intergenic 35.0%
CCTAAACTTAACCATCTACT+AGG - chr4_1:65161412-65161431 None:intergenic 35.0%
CCTAGTAGATGGTTAAGTTT+AGG + chr4_1:65161409-65161428 Msa0564500:CDS 35.0%
! ATGGTTAAGTTTAGGACAAG+AGG + chr4_1:65161417-65161436 Msa0564500:CDS 35.0%
! TGGTTAAGTTTAGGACAAGA+GGG + chr4_1:65161418-65161437 Msa0564500:CDS 35.0%
! CCAGCAAATAACAAAGCTTT+TGG - chr4_1:65161553-65161572 None:intergenic 35.0%
!! CCAAAAGCTTTGTTATTTGC+TGG + chr4_1:65161550-65161569 Msa0564500:CDS 35.0%
!! TGCTGGATTGTTAACTTGTT+TGG + chr4_1:65161567-65161586 Msa0564500:CDS 35.0%
!! GCTGGATTGTTAACTTGTTT+GGG + chr4_1:65161568-65161587 Msa0564500:CDS 35.0%
CTGGGAATTGGTTGAAATAT+TGG + chr4_1:65161686-65161705 Msa0564500:CDS 35.0%
!!! GGTGCTGTTTTGTCAATTAT+TGG + chr4_1:65161718-65161737 Msa0564500:CDS 35.0%
! AGTGCTGCATATCAACTTTT+AGG + chr4_1:65161763-65161782 Msa0564500:CDS 35.0%
!! ACTTTTAGGTATGTCTGACT+TGG + chr4_1:65161777-65161796 Msa0564500:CDS 35.0%
!! CTTTTAGGTATGTCTGACTT+GGG + chr4_1:65161778-65161797 Msa0564500:CDS 35.0%
CAAAGTTGTTTAACACACCT+TGG + chr4_1:65161830-65161849 Msa0564500:CDS 35.0%
GAAATCAAAATTGCCATCCA+AGG - chr4_1:65161850-65161869 None:intergenic 35.0%
! TTGCTTCTTTCCTTAAGTTG+AGG + chr4_1:65161962-65161981 Msa0564500:CDS 35.0%
AATCCAAGTGGAACCTTATA+AGG - chr4_1:65162012-65162031 None:intergenic 35.0%
TGAATCTTTGCAAGTCTAAG+AGG + chr4_1:65162160-65162179 Msa0564500:CDS 35.0%
!! CTCATCTACTTTGAGGTATC+TGG + chr4_1:65160935-65160954 Msa0564500:CDS 40.0%
!! ATCTACTTTGAGGTATCTGG+TGG + chr4_1:65160938-65160957 Msa0564500:CDS 40.0%
! ACTGTTGCTTCTTCACCATA+AGG - chr4_1:65160965-65160984 None:intergenic 40.0%
!!! GGTCCACTTTTTGCAATTCT+TGG + chr4_1:65160995-65161014 Msa0564500:CDS 40.0%
TAACAAACCCACCATTTCCA+GGG - chr4_1:65161090-65161109 None:intergenic 40.0%
ATAACAAACCCACCATTTCC+AGG - chr4_1:65161091-65161110 None:intergenic 40.0%
! GAAGCTTTTGGTCCATTTTG+GGG + chr4_1:65161121-65161140 Msa0564500:CDS 40.0%
! AAGCTTTTGGTCCATTTTGG+GGG + chr4_1:65161122-65161141 Msa0564500:CDS 40.0%
! GTGATTCCTGTTTTGTCTTC+AGG + chr4_1:65161229-65161248 Msa0564500:CDS 40.0%
GGTAAACCTGAAGACAAAAC+AGG - chr4_1:65161238-65161257 None:intergenic 40.0%
ACAAAAACTGACACTGTACG+AGG - chr4_1:65161259-65161278 None:intergenic 40.0%
! GGTTATACTGCAGTTGGTTT+AGG + chr4_1:65161328-65161347 Msa0564500:CDS 40.0%
! AAGAGGGTGTGGAAAAAGAT+TGG + chr4_1:65161434-65161453 Msa0564500:CDS 40.0%
! ATTCCTTTGTTGGCTACTAC+TGG + chr4_1:65161598-65161617 Msa0564500:CDS 40.0%
! TGCCACTTGATCAAGAAGTT+TGG + chr4_1:65161626-65161645 Msa0564500:CDS 40.0%
GCCACTTGATCAAGAAGTTT+GGG + chr4_1:65161627-65161646 Msa0564500:CDS 40.0%
ACCCAAACTTCTTGATCAAG+TGG - chr4_1:65161631-65161650 None:intergenic 40.0%
CTTGATCAAGAAGTTTGGGT+TGG + chr4_1:65161631-65161650 Msa0564500:CDS 40.0%
!! ATCAAGAAGTTTGGGTTGGT+GGG + chr4_1:65161635-65161654 Msa0564500:CDS 40.0%
GTTGTTTAACACACCTTGGA+TGG + chr4_1:65161834-65161853 Msa0564500:CDS 40.0%
AGACCTTATAAGGTTCCACT+TGG + chr4_1:65162006-65162025 Msa0564500:CDS 40.0%
AAGGTTCCACTTGGATTCTT+TGG + chr4_1:65162015-65162034 Msa0564500:CDS 40.0%
! TTTTGTTCCATCTGTGCTGT+TGG + chr4_1:65162053-65162072 Msa0564500:CDS 40.0%
ACATAAACCAACAGCACAGA+TGG - chr4_1:65162063-65162082 None:intergenic 40.0%
ATCTTTGCAAGTCTAAGAGG+TGG + chr4_1:65162163-65162182 Msa0564500:CDS 40.0%
CAGTGGAGTAGGAGATAAAT+TGG + chr4_1:65162194-65162213 Msa0564500:CDS 40.0%
!! CTCATCTACTTTGAGGTATC+TGG + chr4_1:65160935-65160954 Msa0564500:CDS 40.0%
!! ATCTACTTTGAGGTATCTGG+TGG + chr4_1:65160938-65160957 Msa0564500:CDS 40.0%
! ACTGTTGCTTCTTCACCATA+AGG - chr4_1:65160965-65160984 None:intergenic 40.0%
!!! GGTCCACTTTTTGCAATTCT+TGG + chr4_1:65160995-65161014 Msa0564500:CDS 40.0%
TAACAAACCCACCATTTCCA+GGG - chr4_1:65161090-65161109 None:intergenic 40.0%
ATAACAAACCCACCATTTCC+AGG - chr4_1:65161091-65161110 None:intergenic 40.0%
! GAAGCTTTTGGTCCATTTTG+GGG + chr4_1:65161121-65161140 Msa0564500:CDS 40.0%
! AAGCTTTTGGTCCATTTTGG+GGG + chr4_1:65161122-65161141 Msa0564500:CDS 40.0%
! GTGATTCCTGTTTTGTCTTC+AGG + chr4_1:65161229-65161248 Msa0564500:CDS 40.0%
GGTAAACCTGAAGACAAAAC+AGG - chr4_1:65161238-65161257 None:intergenic 40.0%
ACAAAAACTGACACTGTACG+AGG - chr4_1:65161259-65161278 None:intergenic 40.0%
! GGTTATACTGCAGTTGGTTT+AGG + chr4_1:65161328-65161347 Msa0564500:CDS 40.0%
! AAGAGGGTGTGGAAAAAGAT+TGG + chr4_1:65161434-65161453 Msa0564500:CDS 40.0%
! ATTCCTTTGTTGGCTACTAC+TGG + chr4_1:65161598-65161617 Msa0564500:CDS 40.0%
! TGCCACTTGATCAAGAAGTT+TGG + chr4_1:65161626-65161645 Msa0564500:CDS 40.0%
GCCACTTGATCAAGAAGTTT+GGG + chr4_1:65161627-65161646 Msa0564500:CDS 40.0%
ACCCAAACTTCTTGATCAAG+TGG - chr4_1:65161631-65161650 None:intergenic 40.0%
CTTGATCAAGAAGTTTGGGT+TGG + chr4_1:65161631-65161650 Msa0564500:CDS 40.0%
!! ATCAAGAAGTTTGGGTTGGT+GGG + chr4_1:65161635-65161654 Msa0564500:CDS 40.0%
GTTGTTTAACACACCTTGGA+TGG + chr4_1:65161834-65161853 Msa0564500:CDS 40.0%
AGACCTTATAAGGTTCCACT+TGG + chr4_1:65162006-65162025 Msa0564500:CDS 40.0%
AAGGTTCCACTTGGATTCTT+TGG + chr4_1:65162015-65162034 Msa0564500:CDS 40.0%
! TTTTGTTCCATCTGTGCTGT+TGG + chr4_1:65162053-65162072 Msa0564500:CDS 40.0%
ACATAAACCAACAGCACAGA+TGG - chr4_1:65162063-65162082 None:intergenic 40.0%
ATCTTTGCAAGTCTAAGAGG+TGG + chr4_1:65162163-65162182 Msa0564500:CDS 40.0%
CAGTGGAGTAGGAGATAAAT+TGG + chr4_1:65162194-65162213 Msa0564500:CDS 40.0%
CTGCAGTTAACAGAGCTTCT+GGG - chr4_1:65161051-65161070 None:intergenic 45.0%
TCTGCAGTTAACAGAGCTTC+TGG - chr4_1:65161052-65161071 None:intergenic 45.0%
GAATTAGCTACAGCATTCCC+TGG + chr4_1:65161070-65161089 Msa0564500:CDS 45.0%
!! TCCATTTTGGGGGTCTCTTA+TGG + chr4_1:65161132-65161151 Msa0564500:CDS 45.0%
!! CCATTTTGGGGGTCTCTTAT+GGG + chr4_1:65161133-65161152 Msa0564500:CDS 45.0%
! AAGTTTAGGACAAGAGGGTG+TGG + chr4_1:65161423-65161442 Msa0564500:CDS 45.0%
GATAGTGCTAGCACTTTAGC+TGG + chr4_1:65161499-65161518 Msa0564500:CDS 45.0%
!! GATCAAGAAGTTTGGGTTGG+TGG + chr4_1:65161634-65161653 Msa0564500:CDS 45.0%
!! TGGTGGGTATTTTGCACATG+TGG + chr4_1:65161651-65161670 Msa0564500:CDS 45.0%
!! ATGTGGCTGGTTTGATTGCT+GGG + chr4_1:65161668-65161687 Msa0564500:CDS 45.0%
! CTGGTTTGATTGCTGGGAAT+TGG + chr4_1:65161674-65161693 Msa0564500:CDS 45.0%
!! AAGAGGTGGATTGAGTTCAG+TGG + chr4_1:65162177-65162196 Msa0564500:CDS 45.0%
TGGATTGAGTTCAGTGGAGT+AGG + chr4_1:65162183-65162202 Msa0564500:CDS 45.0%
CTGCAGTTAACAGAGCTTCT+GGG - chr4_1:65161051-65161070 None:intergenic 45.0%
TCTGCAGTTAACAGAGCTTC+TGG - chr4_1:65161052-65161071 None:intergenic 45.0%
GAATTAGCTACAGCATTCCC+TGG + chr4_1:65161070-65161089 Msa0564500:CDS 45.0%
!! TCCATTTTGGGGGTCTCTTA+TGG + chr4_1:65161132-65161151 Msa0564500:CDS 45.0%
!! CCATTTTGGGGGTCTCTTAT+GGG + chr4_1:65161133-65161152 Msa0564500:CDS 45.0%
! AAGTTTAGGACAAGAGGGTG+TGG + chr4_1:65161423-65161442 Msa0564500:CDS 45.0%
GATAGTGCTAGCACTTTAGC+TGG + chr4_1:65161499-65161518 Msa0564500:CDS 45.0%
!! GATCAAGAAGTTTGGGTTGG+TGG + chr4_1:65161634-65161653 Msa0564500:CDS 45.0%
!! TGGTGGGTATTTTGCACATG+TGG + chr4_1:65161651-65161670 Msa0564500:CDS 45.0%
!! ATGTGGCTGGTTTGATTGCT+GGG + chr4_1:65161668-65161687 Msa0564500:CDS 45.0%
! CTGGTTTGATTGCTGGGAAT+TGG + chr4_1:65161674-65161693 Msa0564500:CDS 45.0%
!! AAGAGGTGGATTGAGTTCAG+TGG + chr4_1:65162177-65162196 Msa0564500:CDS 45.0%
TGGATTGAGTTCAGTGGAGT+AGG + chr4_1:65162183-65162202 Msa0564500:CDS 45.0%
! GAGGTATCTGGTGGACCTTA+TGG + chr4_1:65160947-65160966 Msa0564500:CDS 50.0%
! GAAGCAACAGTAAGTGCTGC+AGG + chr4_1:65160974-65160993 Msa0564500:CDS 50.0%
GCTACAGCATTCCCTGGAAA+TGG + chr4_1:65161076-65161095 Msa0564500:CDS 50.0%
ACAGCATTCCCTGGAAATGG+TGG + chr4_1:65161079-65161098 Msa0564500:CDS 50.0%
CAGCATTCCCTGGAAATGGT+GGG + chr4_1:65161080-65161099 Msa0564500:CDS 50.0%
CCCATAAGAGACCCCCAAAA+TGG - chr4_1:65161136-65161155 None:intergenic 50.0%
GCACCAGTAGTAGCCAACAA+AGG - chr4_1:65161604-65161623 None:intergenic 50.0%
! GGGTATTTTGCACATGTGGC+TGG + chr4_1:65161655-65161674 Msa0564500:CDS 50.0%
!! CATGTGGCTGGTTTGATTGC+TGG + chr4_1:65161667-65161686 Msa0564500:CDS 50.0%
! GAGGTATCTGGTGGACCTTA+TGG + chr4_1:65160947-65160966 Msa0564500:CDS 50.0%
! GAAGCAACAGTAAGTGCTGC+AGG + chr4_1:65160974-65160993 Msa0564500:CDS 50.0%
GCTACAGCATTCCCTGGAAA+TGG + chr4_1:65161076-65161095 Msa0564500:CDS 50.0%
ACAGCATTCCCTGGAAATGG+TGG + chr4_1:65161079-65161098 Msa0564500:CDS 50.0%
CAGCATTCCCTGGAAATGGT+GGG + chr4_1:65161080-65161099 Msa0564500:CDS 50.0%
CCCATAAGAGACCCCCAAAA+TGG - chr4_1:65161136-65161155 None:intergenic 50.0%
GCACCAGTAGTAGCCAACAA+AGG - chr4_1:65161604-65161623 None:intergenic 50.0%
! GGGTATTTTGCACATGTGGC+TGG + chr4_1:65161655-65161674 Msa0564500:CDS 50.0%
!! CATGTGGCTGGTTTGATTGC+TGG + chr4_1:65161667-65161686 Msa0564500:CDS 50.0%
! GGGGGTCTCTTATGGGCTAC+TGG + chr4_1:65161140-65161159 Msa0564500:CDS 60.0%
! GGGGGTCTCTTATGGGCTAC+TGG + chr4_1:65161140-65161159 Msa0564500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65160794 65162242 65160794 ID=Msa0564500;Name=Msa0564500
chr4_1 mRNA 65160794 65162242 65160794 ID=Msa0564500-mRNA-1;Parent=Msa0564500;Name=Msa0564500-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|482
chr4_1 exon 65160794 65162242 65160794 ID=Msa0564500-mRNA-1:exon:20939;Parent=Msa0564500-mRNA-1
chr4_1 CDS 65160794 65162242 65160794 ID=Msa0564500-mRNA-1:cds;Parent=Msa0564500-mRNA-1
Gene Sequence

>Msa0564500

ATGGGTGCTTATGATTCTGAACCCCTTCACTCTTCAACACAAAACTCTTATCATCAACATCTTTTAAACCAAAGAGAAGAAGAAGATTCAAACCCCAAAACCAAATCACAAAAAAAGCTAGCACTTCTCCCTCTAATCTTTCTCATCTACTTTGAGGTATCTGGTGGACCTTATGGTGAAGAAGCAACAGTAAGTGCTGCAGGTCCACTTTTTGCAATTCTTGGATTTATAATTTTCCCATTTATTTGGAGTATCCCAGAAGCTCTGTTAACTGCAGAATTAGCTACAGCATTCCCTGGAAATGGTGGGTTTGTTATTTGGGCTAATGAAGCTTTTGGTCCATTTTGGGGGTCTCTTATGGGCTACTGGAAATATTTTTGTGGTGTCATAAATTTAGCATCTTTCCCAATTCTATGTATAGATTATCTCAAAGTTGTGATTCCTGTTTTGTCTTCAGGTTTACCTCGTACAGTGTCAGTTTTTGTCTCAACTGCTTTGTTGTCTTTTTTGAATTATTCTGGTTTAGCTATAGTTGGTTATACTGCAGTTGGTTTAGGTGTTATTTCCCTTTTGCCCTTTGTGTTAATGTCTTTGATTTCAGTGCCTAAAATTGATCCTAGTAGATGGTTAAGTTTAGGACAAGAGGGTGTGGAAAAAGATTGGACACTTTTTTTCAATACTATTTTTTGGAACTTGAATTTTTGGGATAGTGCTAGCACTTTAGCTGGTGAAGTTGAAGAGCCACATAAAACTTTTCCAAAAGCTTTGTTATTTGCTGGATTGTTAACTTGTTTGGGTTATATAATTCCTTTGTTGGCTACTACTGGTGCTATGCCACTTGATCAAGAAGTTTGGGTTGGTGGGTATTTTGCACATGTGGCTGGTTTGATTGCTGGGAATTGGTTGAAATATTGGATGGAAATTGGTGCTGTTTTGTCAATTATTGGATTATTTGAAGCTCAATTAAGTAGTGCTGCATATCAACTTTTAGGTATGTCTGACTTGGGATTCATACCAAAAATATTTGGTGAAAGATCAAAGTTGTTTAACACACCTTGGATGGCAATTTTGATTTCAACAATAATATCACTTGGTATGTCTTTTTTTAGTTTTACAGAGATTATATCTACTGTTAATTTTTTGTATAGTTTAGGTATGCTTTTGGAGTTTGCTTCTTTCCTTAAGTTGAGGAAAAAATTCCCTACAATGAAAAGACCTTATAAGGTTCCACTTGGATTCTTTGGTTTAATTGTAATGTGTTTTGTTCCATCTGTGCTGTTGGTTTATGTGATGACTGTTGCTACCAAAATTGTATATGTGGCTAGTGCTTTCTTAACATTCTTAGGGATAGTGTTGTATTATTTCATGAATCTTTGCAAGTCTAAGAGGTGGATTGAGTTCAGTGGAGTAGGAGATAAATTGGATGAAGATGAAGATATTATTATATAG

Protein sequence

>Msa0564500

MGAYDSEPLHSSTQNSYHQHLLNQREEEDSNPKTKSQKKLALLPLIFLIYFEVSGGPYGEEATVSAAGPLFAILGFIIFPFIWSIPEALLTAELATAFPGNGGFVIWANEAFGPFWGSLMGYWKYFCGVINLASFPILCIDYLKVVIPVLSSGLPRTVSVFVSTALLSFLNYSGLAIVGYTAVGLGVISLLPFVLMSLISVPKIDPSRWLSLGQEGVEKDWTLFFNTIFWNLNFWDSASTLAGEVEEPHKTFPKALLFAGLLTCLGYIIPLLATTGAMPLDQEVWVGGYFAHVAGLIAGNWLKYWMEIGAVLSIIGLFEAQLSSAAYQLLGMSDLGFIPKIFGERSKLFNTPWMAILISTIISLGMSFFSFTEIISTVNFLYSLGMLLEFASFLKLRKKFPTMKRPYKVPLGFFGLIVMCFVPSVLLVYVMTVATKIVYVASAFLTFLGIVLYYFMNLCKSKRWIEFSGVGDKLDEDEDIII*