Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0564500 | XP_003629706.1 | 97.704 | 479 | 11 | 0 | 1 | 479 | 1 | 479 | 0.0 | 942 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0564500 | sp|Q9LHN7|PHSC_ARATH | 60.814 | 467 | 180 | 2 | 13 | 479 | 4 | 467 | 0.0 | 573 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0564500 | G7LHY8 | 97.704 | 479 | 11 | 0 | 1 | 479 | 1 | 479 | 0.0 | 942 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0564500 | Msa0564510 | 0.814660 | 1.376133e-51 | -8.615850e-47 |
Msa0564500 | Msa0617840 | 0.850295 | 1.862743e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0564500 | MtrunA17_Chr8g0378551 | 97.704 | 479 | 11 | 0 | 1 | 479 | 1 | 479 | 0.0 | 942 |
Msa0564500 | MtrunA17_Chr5g0426641 | 63.820 | 445 | 156 | 1 | 35 | 479 | 20 | 459 | 0.0 | 579 |
Msa0564500 | MtrunA17_Chr1g0211371 | 48.667 | 450 | 228 | 2 | 26 | 475 | 12 | 458 | 1.46e-152 | 442 |
Msa0564500 | MtrunA17_Chr3g0094551 | 48.299 | 441 | 225 | 2 | 38 | 478 | 17 | 454 | 1.33e-149 | 435 |
Msa0564500 | MtrunA17_Chr5g0409251 | 47.619 | 441 | 229 | 2 | 28 | 468 | 18 | 456 | 1.73e-148 | 432 |
Msa0564500 | MtrunA17_Chr5g0393681 | 47.945 | 438 | 224 | 3 | 33 | 469 | 3 | 437 | 2.71e-132 | 391 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0564500 | AT3G13620.1 | 60.814 | 467 | 180 | 2 | 13 | 479 | 4 | 467 | 0.0 | 573 |
Msa0564500 | AT1G31830.1 | 48.352 | 455 | 231 | 3 | 26 | 479 | 34 | 485 | 9.32e-157 | 454 |
Msa0564500 | AT1G31830.2 | 48.352 | 455 | 231 | 3 | 26 | 479 | 18 | 469 | 1.16e-156 | 454 |
Msa0564500 | AT5G05630.1 | 49.099 | 444 | 224 | 2 | 26 | 468 | 38 | 480 | 1.09e-154 | 449 |
Msa0564500 | AT1G31820.1 | 48.696 | 460 | 226 | 3 | 29 | 481 | 25 | 481 | 1.39e-152 | 443 |
Msa0564500 | AT3G19553.1 | 51.404 | 463 | 212 | 5 | 27 | 479 | 9 | 468 | 5.96e-148 | 431 |
Find 79 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATGGTGGGTTTGTTATT+TGG | 0.119761 | 4_1:+65161092 | Msa0564500:CDS |
AGTGCTTTCTTAACATTCTT+AGG | 0.147342 | 4_1:+65162117 | Msa0564500:CDS |
CTCATCTACTTTGAGGTATC+TGG | 0.167645 | 4_1:+65160935 | Msa0564500:CDS |
TTGAATCTTCTTCTTCTCTT+TGG | 0.199488 | 4_1:-65160862 | None:intergenic |
CTGGGAATTGGTTGAAATAT+TGG | 0.212399 | 4_1:+65161686 | Msa0564500:CDS |
TCTGGGATACTCCAAATAAA+TGG | 0.218421 | 4_1:-65161031 | None:intergenic |
AAGGTTCCACTTGGATTCTT+TGG | 0.223454 | 4_1:+65162015 | Msa0564500:CDS |
TGCTGGATTGTTAACTTGTT+TGG | 0.231778 | 4_1:+65161567 | Msa0564500:CDS |
ACTAGCCACATATACAATTT+TGG | 0.238044 | 4_1:-65162097 | None:intergenic |
TCTGCAGTTAACAGAGCTTC+TGG | 0.247712 | 4_1:-65161049 | None:intergenic |
AAATGGTGGGTTTGTTATTT+GGG | 0.257640 | 4_1:+65161093 | Msa0564500:CDS |
CCAGCAAATAACAAAGCTTT+TGG | 0.261342 | 4_1:-65161550 | None:intergenic |
TTGAAATATTGGATGGAAAT+TGG | 0.269249 | 4_1:+65161697 | Msa0564500:CDS |
CAGTGGAGTAGGAGATAAAT+TGG | 0.283001 | 4_1:+65162194 | Msa0564500:CDS |
GGTTATACTGCAGTTGGTTT+AGG | 0.285281 | 4_1:+65161328 | Msa0564500:CDS |
CCAAAAGCTTTGTTATTTGC+TGG | 0.287356 | 4_1:+65161550 | Msa0564500:CDS |
ATTTGGGCTAATGAAGCTTT+TGG | 0.289227 | 4_1:+65161109 | Msa0564500:CDS |
TACAATGAAAAGACCTTATA+AGG | 0.296408 | 4_1:+65161996 | Msa0564500:CDS |
AATCCAAGTGGAACCTTATA+AGG | 0.306194 | 4_1:-65162009 | None:intergenic |
TGCCACTTGATCAAGAAGTT+TGG | 0.318408 | 4_1:+65161626 | Msa0564500:CDS |
CTGGTTTGATTGCTGGGAAT+TGG | 0.320667 | 4_1:+65161674 | Msa0564500:CDS |
GGGTTATATAATTCCTTTGT+TGG | 0.320719 | 4_1:+65161588 | Msa0564500:CDS |
AGATAATCTATACATAGAAT+TGG | 0.327586 | 4_1:-65161199 | None:intergenic |
GTATAGTTTAGGTATGCTTT+TGG | 0.330507 | 4_1:+65161936 | Msa0564500:CDS |
CCTAGTAGATGGTTAAGTTT+AGG | 0.331119 | 4_1:+65161409 | Msa0564500:CDS |
GCCACTTGATCAAGAAGTTT+GGG | 0.332993 | 4_1:+65161627 | Msa0564500:CDS |
CATGTGGCTGGTTTGATTGC+TGG | 0.333123 | 4_1:+65161667 | Msa0564500:CDS |
GCTGGATTGTTAACTTGTTT+GGG | 0.336043 | 4_1:+65161568 | Msa0564500:CDS |
AATCTTTCTCATCTACTTTG+AGG | 0.359694 | 4_1:+65160928 | Msa0564500:CDS |
GAGGTATCTGGTGGACCTTA+TGG | 0.387052 | 4_1:+65160947 | Msa0564500:CDS |
ATTCCTTTGTTGGCTACTAC+TGG | 0.396954 | 4_1:+65161598 | Msa0564500:CDS |
ATAACAAACCCACCATTTCC+AGG | 0.406978 | 4_1:-65161088 | None:intergenic |
TGGATTGAGTTCAGTGGAGT+AGG | 0.412536 | 4_1:+65162183 | Msa0564500:CDS |
GTGCTTTCTTAACATTCTTA+GGG | 0.418391 | 4_1:+65162118 | Msa0564500:CDS |
ATGTGGCTGGTTTGATTGCT+GGG | 0.424967 | 4_1:+65161668 | Msa0564500:CDS |
TATTCTGGTTTAGCTATAGT+TGG | 0.426561 | 4_1:+65161307 | Msa0564500:CDS |
ACATTAACACAAAGGGCAAA+AGG | 0.443673 | 4_1:-65161360 | None:intergenic |
ACTGTTGCTTCTTCACCATA+AGG | 0.446104 | 4_1:-65160962 | None:intergenic |
CTGGGATACTCCAAATAAAT+GGG | 0.448636 | 4_1:-65161030 | None:intergenic |
CTGCAGTTAACAGAGCTTCT+GGG | 0.454168 | 4_1:-65161048 | None:intergenic |
AAGTAGATGAGAAAGATTAG+AGG | 0.454596 | 4_1:-65160923 | None:intergenic |
CTAAAATTGATCCTAGTAGA+TGG | 0.462759 | 4_1:+65161398 | Msa0564500:CDS |
GCTACAGCATTCCCTGGAAA+TGG | 0.470404 | 4_1:+65161076 | Msa0564500:CDS |
GATAATCTATACATAGAATT+GGG | 0.472908 | 4_1:-65161198 | None:intergenic |
ATCAAAGACATTAACACAAA+GGG | 0.476966 | 4_1:-65161367 | None:intergenic |
CCTAAACTTAACCATCTACT+AGG | 0.478755 | 4_1:-65161409 | None:intergenic |
CAAAGTTGTTTAACACACCT+TGG | 0.480563 | 4_1:+65161830 | Msa0564500:CDS |
ATGGTTAAGTTTAGGACAAG+AGG | 0.482198 | 4_1:+65161417 | Msa0564500:CDS |
TGAATCTTTGCAAGTCTAAG+AGG | 0.493630 | 4_1:+65162160 | Msa0564500:CDS |
ATCAAGAAGTTTGGGTTGGT+GGG | 0.495054 | 4_1:+65161635 | Msa0564500:CDS |
GATCAAGAAGTTTGGGTTGG+TGG | 0.497496 | 4_1:+65161634 | Msa0564500:CDS |
GGTAAACCTGAAGACAAAAC+AGG | 0.502863 | 4_1:-65161235 | None:intergenic |
CATTAACACAAAGGGCAAAA+GGG | 0.503892 | 4_1:-65161359 | None:intergenic |
GATAGTGCTAGCACTTTAGC+TGG | 0.508343 | 4_1:+65161499 | Msa0564500:CDS |
ATAGTTGGTTATACTGCAGT+TGG | 0.509080 | 4_1:+65161322 | Msa0564500:CDS |
GTTGTTTAACACACCTTGGA+TGG | 0.512626 | 4_1:+65161834 | Msa0564500:CDS |
GAAGCAACAGTAAGTGCTGC+AGG | 0.513783 | 4_1:+65160974 | Msa0564500:CDS |
AGTAGATGAGAAAGATTAGA+GGG | 0.514522 | 4_1:-65160922 | None:intergenic |
TGGTTAAGTTTAGGACAAGA+GGG | 0.515356 | 4_1:+65161418 | Msa0564500:CDS |
AGACCTTATAAGGTTCCACT+TGG | 0.526727 | 4_1:+65162006 | Msa0564500:CDS |
TGCTACCAAAATTGTATATG+TGG | 0.535048 | 4_1:+65162092 | Msa0564500:CDS |
ACATAAACCAACAGCACAGA+TGG | 0.538480 | 4_1:-65162060 | None:intergenic |
CTTGATCAAGAAGTTTGGGT+TGG | 0.540498 | 4_1:+65161631 | Msa0564500:CDS |
TTGCTTCTTTCCTTAAGTTG+AGG | 0.541531 | 4_1:+65161962 | Msa0564500:CDS |
ATCTACTTTGAGGTATCTGG+TGG | 0.545094 | 4_1:+65160938 | Msa0564500:CDS |
AAGTTTAGGACAAGAGGGTG+TGG | 0.548272 | 4_1:+65161423 | Msa0564500:CDS |
ACCCAAACTTCTTGATCAAG+TGG | 0.548962 | 4_1:-65161628 | None:intergenic |
ACAGCATTCCCTGGAAATGG+TGG | 0.558001 | 4_1:+65161079 | Msa0564500:CDS |
ATTTCAACAATAATATCACT+TGG | 0.558408 | 4_1:+65161865 | Msa0564500:CDS |
GAATTAGCTACAGCATTCCC+TGG | 0.558740 | 4_1:+65161070 | Msa0564500:CDS |
TAACAAACCCACCATTTCCA+GGG | 0.582040 | 4_1:-65161087 | None:intergenic |
GAAATCAAAATTGCCATCCA+AGG | 0.585439 | 4_1:-65161847 | None:intergenic |
ATCTTTGCAAGTCTAAGAGG+TGG | 0.589872 | 4_1:+65162163 | Msa0564500:CDS |
CAGCATTCCCTGGAAATGGT+GGG | 0.590354 | 4_1:+65161080 | Msa0564500:CDS |
GAATTGGTTGAAATATTGGA+TGG | 0.593097 | 4_1:+65161690 | Msa0564500:CDS |
ATTAAACCAAAGAATCCAAG+TGG | 0.616942 | 4_1:-65162021 | None:intergenic |
AATCAAAGACATTAACACAA+AGG | 0.619734 | 4_1:-65161368 | None:intergenic |
AAGAGGTGGATTGAGTTCAG+TGG | 0.650160 | 4_1:+65162177 | Msa0564500:CDS |
GCACCAGTAGTAGCCAACAA+AGG | 0.678385 | 4_1:-65161601 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTCAATACTATTTTT+TGG | + | chr4_1:65161461-65161480 | Msa0564500:CDS | 10.0% |
!!! | TTTTTTTCAATACTATTTTT+TGG | + | chr4_1:65161461-65161480 | Msa0564500:CDS | 10.0% |
!!! | TTATAATTTTCCCATTTATT+TGG | + | chr4_1:65161020-65161039 | Msa0564500:CDS | 15.0% |
!!! | GTTAATTTTTTGTATAGTTT+AGG | + | chr4_1:65161925-65161944 | Msa0564500:CDS | 15.0% |
!!! | TTATAATTTTCCCATTTATT+TGG | + | chr4_1:65161020-65161039 | Msa0564500:CDS | 15.0% |
!!! | GTTAATTTTTTGTATAGTTT+AGG | + | chr4_1:65161925-65161944 | Msa0564500:CDS | 15.0% |
!!! | TTTTTTTGTGATTTGGTTTT+GGG | - | chr4_1:65160890-65160909 | None:intergenic | 20.0% |
!! | GATAATCTATACATAGAATT+GGG | - | chr4_1:65161201-65161220 | None:intergenic | 20.0% |
!! | AGATAATCTATACATAGAAT+TGG | - | chr4_1:65161202-65161221 | None:intergenic | 20.0% |
!!! | TTGTCTTTTTTGAATTATTC+TGG | + | chr4_1:65161292-65161311 | Msa0564500:CDS | 20.0% |
!!! | TTTTTTGGAACTTGAATTTT+TGG | + | chr4_1:65161476-65161495 | Msa0564500:CDS | 20.0% |
!!! | TTTTTGGAACTTGAATTTTT+GGG | + | chr4_1:65161477-65161496 | Msa0564500:CDS | 20.0% |
!! | ATTTCAACAATAATATCACT+TGG | + | chr4_1:65161865-65161884 | Msa0564500:CDS | 20.0% |
!!! | TTTTTTTGTGATTTGGTTTT+GGG | - | chr4_1:65160890-65160909 | None:intergenic | 20.0% |
!! | GATAATCTATACATAGAATT+GGG | - | chr4_1:65161201-65161220 | None:intergenic | 20.0% |
!! | AGATAATCTATACATAGAAT+TGG | - | chr4_1:65161202-65161221 | None:intergenic | 20.0% |
!!! | TTGTCTTTTTTGAATTATTC+TGG | + | chr4_1:65161292-65161311 | Msa0564500:CDS | 20.0% |
!!! | TTTTTTGGAACTTGAATTTT+TGG | + | chr4_1:65161476-65161495 | Msa0564500:CDS | 20.0% |
!!! | TTTTTGGAACTTGAATTTTT+GGG | + | chr4_1:65161477-65161496 | Msa0564500:CDS | 20.0% |
!! | ATTTCAACAATAATATCACT+TGG | + | chr4_1:65161865-65161884 | Msa0564500:CDS | 20.0% |
!!! | TTTTTTGTGATTTGGTTTTG+GGG | - | chr4_1:65160889-65160908 | None:intergenic | 25.0% |
!!! | CTTTTTTTGTGATTTGGTTT+TGG | - | chr4_1:65160891-65160910 | None:intergenic | 25.0% |
! | ATCAAAGACATTAACACAAA+GGG | - | chr4_1:65161370-65161389 | None:intergenic | 25.0% |
! | AATCAAAGACATTAACACAA+AGG | - | chr4_1:65161371-65161390 | None:intergenic | 25.0% |
! | TTGAAATATTGGATGGAAAT+TGG | + | chr4_1:65161697-65161716 | Msa0564500:CDS | 25.0% |
! | GGATTCATACCAAAAATATT+TGG | + | chr4_1:65161799-65161818 | Msa0564500:CDS | 25.0% |
!! | GATCTTTCACCAAATATTTT+TGG | - | chr4_1:65161811-65161830 | None:intergenic | 25.0% |
!! | TATAAGGTCTTTTCATTGTA+GGG | - | chr4_1:65161996-65162015 | None:intergenic | 25.0% |
!! | TTATAAGGTCTTTTCATTGT+AGG | - | chr4_1:65161997-65162016 | None:intergenic | 25.0% |
! | TACAATGAAAAGACCTTATA+AGG | + | chr4_1:65161996-65162015 | Msa0564500:CDS | 25.0% |
!!! | TTTTTTGTGATTTGGTTTTG+GGG | - | chr4_1:65160889-65160908 | None:intergenic | 25.0% |
!!! | CTTTTTTTGTGATTTGGTTT+TGG | - | chr4_1:65160891-65160910 | None:intergenic | 25.0% |
! | ATCAAAGACATTAACACAAA+GGG | - | chr4_1:65161370-65161389 | None:intergenic | 25.0% |
! | AATCAAAGACATTAACACAA+AGG | - | chr4_1:65161371-65161390 | None:intergenic | 25.0% |
! | TTGAAATATTGGATGGAAAT+TGG | + | chr4_1:65161697-65161716 | Msa0564500:CDS | 25.0% |
! | GGATTCATACCAAAAATATT+TGG | + | chr4_1:65161799-65161818 | Msa0564500:CDS | 25.0% |
!! | GATCTTTCACCAAATATTTT+TGG | - | chr4_1:65161811-65161830 | None:intergenic | 25.0% |
!! | TATAAGGTCTTTTCATTGTA+GGG | - | chr4_1:65161996-65162015 | None:intergenic | 25.0% |
!! | TTATAAGGTCTTTTCATTGT+AGG | - | chr4_1:65161997-65162016 | None:intergenic | 25.0% |
! | TACAATGAAAAGACCTTATA+AGG | + | chr4_1:65161996-65162015 | Msa0564500:CDS | 25.0% |
TTGAATCTTCTTCTTCTCTT+TGG | - | chr4_1:65160865-65160884 | None:intergenic | 30.0% | |
!!! | TGCTAGCTTTTTTTGTGATT+TGG | - | chr4_1:65160897-65160916 | None:intergenic | 30.0% |
AGTAGATGAGAAAGATTAGA+GGG | - | chr4_1:65160925-65160944 | None:intergenic | 30.0% | |
AAGTAGATGAGAAAGATTAG+AGG | - | chr4_1:65160926-65160945 | None:intergenic | 30.0% | |
AATCTTTCTCATCTACTTTG+AGG | + | chr4_1:65160928-65160947 | Msa0564500:CDS | 30.0% | |
AATCCAAGAATTGCAAAAAG+TGG | - | chr4_1:65161001-65161020 | None:intergenic | 30.0% | |
!! | AAATGGTGGGTTTGTTATTT+GGG | + | chr4_1:65161093-65161112 | Msa0564500:CDS | 30.0% |
!! | TATTCTGGTTTAGCTATAGT+TGG | + | chr4_1:65161307-65161326 | Msa0564500:CDS | 30.0% |
! | CATCTACTAGGATCAATTTT+AGG | - | chr4_1:65161400-65161419 | None:intergenic | 30.0% |
CTAAAATTGATCCTAGTAGA+TGG | + | chr4_1:65161398-65161417 | Msa0564500:CDS | 30.0% | |
!! | GCTTTTGGAAAAGTTTTATG+TGG | - | chr4_1:65161538-65161557 | None:intergenic | 30.0% |
GGGTTATATAATTCCTTTGT+TGG | + | chr4_1:65161588-65161607 | Msa0564500:CDS | 30.0% | |
GAATTGGTTGAAATATTGGA+TGG | + | chr4_1:65161690-65161709 | Msa0564500:CDS | 30.0% | |
! | GTATAGTTTAGGTATGCTTT+TGG | + | chr4_1:65161936-65161955 | Msa0564500:CDS | 30.0% |
!!! | GGAATTTTTTCCTCAACTTA+AGG | - | chr4_1:65161975-65161994 | None:intergenic | 30.0% |
ATTAAACCAAAGAATCCAAG+TGG | - | chr4_1:65162024-65162043 | None:intergenic | 30.0% | |
TGCTACCAAAATTGTATATG+TGG | + | chr4_1:65162092-65162111 | Msa0564500:CDS | 30.0% | |
! | ACTAGCCACATATACAATTT+TGG | - | chr4_1:65162100-65162119 | None:intergenic | 30.0% |
AGTGCTTTCTTAACATTCTT+AGG | + | chr4_1:65162117-65162136 | Msa0564500:CDS | 30.0% | |
GTGCTTTCTTAACATTCTTA+GGG | + | chr4_1:65162118-65162137 | Msa0564500:CDS | 30.0% | |
TTGAATCTTCTTCTTCTCTT+TGG | - | chr4_1:65160865-65160884 | None:intergenic | 30.0% | |
!!! | TGCTAGCTTTTTTTGTGATT+TGG | - | chr4_1:65160897-65160916 | None:intergenic | 30.0% |
AGTAGATGAGAAAGATTAGA+GGG | - | chr4_1:65160925-65160944 | None:intergenic | 30.0% | |
AAGTAGATGAGAAAGATTAG+AGG | - | chr4_1:65160926-65160945 | None:intergenic | 30.0% | |
AATCTTTCTCATCTACTTTG+AGG | + | chr4_1:65160928-65160947 | Msa0564500:CDS | 30.0% | |
AATCCAAGAATTGCAAAAAG+TGG | - | chr4_1:65161001-65161020 | None:intergenic | 30.0% | |
!! | AAATGGTGGGTTTGTTATTT+GGG | + | chr4_1:65161093-65161112 | Msa0564500:CDS | 30.0% |
!! | TATTCTGGTTTAGCTATAGT+TGG | + | chr4_1:65161307-65161326 | Msa0564500:CDS | 30.0% |
! | CATCTACTAGGATCAATTTT+AGG | - | chr4_1:65161400-65161419 | None:intergenic | 30.0% |
CTAAAATTGATCCTAGTAGA+TGG | + | chr4_1:65161398-65161417 | Msa0564500:CDS | 30.0% | |
!! | GCTTTTGGAAAAGTTTTATG+TGG | - | chr4_1:65161538-65161557 | None:intergenic | 30.0% |
GGGTTATATAATTCCTTTGT+TGG | + | chr4_1:65161588-65161607 | Msa0564500:CDS | 30.0% | |
GAATTGGTTGAAATATTGGA+TGG | + | chr4_1:65161690-65161709 | Msa0564500:CDS | 30.0% | |
! | GTATAGTTTAGGTATGCTTT+TGG | + | chr4_1:65161936-65161955 | Msa0564500:CDS | 30.0% |
!!! | GGAATTTTTTCCTCAACTTA+AGG | - | chr4_1:65161975-65161994 | None:intergenic | 30.0% |
ATTAAACCAAAGAATCCAAG+TGG | - | chr4_1:65162024-65162043 | None:intergenic | 30.0% | |
TGCTACCAAAATTGTATATG+TGG | + | chr4_1:65162092-65162111 | Msa0564500:CDS | 30.0% | |
! | ACTAGCCACATATACAATTT+TGG | - | chr4_1:65162100-65162119 | None:intergenic | 30.0% |
AGTGCTTTCTTAACATTCTT+AGG | + | chr4_1:65162117-65162136 | Msa0564500:CDS | 30.0% | |
GTGCTTTCTTAACATTCTTA+GGG | + | chr4_1:65162118-65162137 | Msa0564500:CDS | 30.0% | |
! | TTTTGTGTTGAAGAGTGAAG+GGG | - | chr4_1:65160818-65160837 | None:intergenic | 35.0% |
! | GTTTTGTGTTGAAGAGTGAA+GGG | - | chr4_1:65160819-65160838 | None:intergenic | 35.0% |
!! | AGTTTTGTGTTGAAGAGTGA+AGG | - | chr4_1:65160820-65160839 | None:intergenic | 35.0% |
CTGGGATACTCCAAATAAAT+GGG | - | chr4_1:65161033-65161052 | None:intergenic | 35.0% | |
! | TCTGGGATACTCCAAATAAA+TGG | - | chr4_1:65161034-65161053 | None:intergenic | 35.0% |
!! | GAAATGGTGGGTTTGTTATT+TGG | + | chr4_1:65161092-65161111 | Msa0564500:CDS | 35.0% |
! | ATTTGGGCTAATGAAGCTTT+TGG | + | chr4_1:65161109-65161128 | Msa0564500:CDS | 35.0% |
! | ATGAAGCTTTTGGTCCATTT+TGG | + | chr4_1:65161119-65161138 | Msa0564500:CDS | 35.0% |
! | TGAAGCTTTTGGTCCATTTT+GGG | + | chr4_1:65161120-65161139 | Msa0564500:CDS | 35.0% |
!! | GGCTACTGGAAATATTTTTG+TGG | + | chr4_1:65161154-65161173 | Msa0564500:CDS | 35.0% |
ATAGTTGGTTATACTGCAGT+TGG | + | chr4_1:65161322-65161341 | Msa0564500:CDS | 35.0% | |
CATTAACACAAAGGGCAAAA+GGG | - | chr4_1:65161362-65161381 | None:intergenic | 35.0% | |
ACATTAACACAAAGGGCAAA+AGG | - | chr4_1:65161363-65161382 | None:intergenic | 35.0% | |
CCTAAACTTAACCATCTACT+AGG | - | chr4_1:65161412-65161431 | None:intergenic | 35.0% | |
CCTAGTAGATGGTTAAGTTT+AGG | + | chr4_1:65161409-65161428 | Msa0564500:CDS | 35.0% | |
! | ATGGTTAAGTTTAGGACAAG+AGG | + | chr4_1:65161417-65161436 | Msa0564500:CDS | 35.0% |
! | TGGTTAAGTTTAGGACAAGA+GGG | + | chr4_1:65161418-65161437 | Msa0564500:CDS | 35.0% |
! | CCAGCAAATAACAAAGCTTT+TGG | - | chr4_1:65161553-65161572 | None:intergenic | 35.0% |
!! | CCAAAAGCTTTGTTATTTGC+TGG | + | chr4_1:65161550-65161569 | Msa0564500:CDS | 35.0% |
!! | TGCTGGATTGTTAACTTGTT+TGG | + | chr4_1:65161567-65161586 | Msa0564500:CDS | 35.0% |
!! | GCTGGATTGTTAACTTGTTT+GGG | + | chr4_1:65161568-65161587 | Msa0564500:CDS | 35.0% |
CTGGGAATTGGTTGAAATAT+TGG | + | chr4_1:65161686-65161705 | Msa0564500:CDS | 35.0% | |
!!! | GGTGCTGTTTTGTCAATTAT+TGG | + | chr4_1:65161718-65161737 | Msa0564500:CDS | 35.0% |
! | AGTGCTGCATATCAACTTTT+AGG | + | chr4_1:65161763-65161782 | Msa0564500:CDS | 35.0% |
!! | ACTTTTAGGTATGTCTGACT+TGG | + | chr4_1:65161777-65161796 | Msa0564500:CDS | 35.0% |
!! | CTTTTAGGTATGTCTGACTT+GGG | + | chr4_1:65161778-65161797 | Msa0564500:CDS | 35.0% |
CAAAGTTGTTTAACACACCT+TGG | + | chr4_1:65161830-65161849 | Msa0564500:CDS | 35.0% | |
GAAATCAAAATTGCCATCCA+AGG | - | chr4_1:65161850-65161869 | None:intergenic | 35.0% | |
! | TTGCTTCTTTCCTTAAGTTG+AGG | + | chr4_1:65161962-65161981 | Msa0564500:CDS | 35.0% |
AATCCAAGTGGAACCTTATA+AGG | - | chr4_1:65162012-65162031 | None:intergenic | 35.0% | |
TGAATCTTTGCAAGTCTAAG+AGG | + | chr4_1:65162160-65162179 | Msa0564500:CDS | 35.0% | |
! | TTTTGTGTTGAAGAGTGAAG+GGG | - | chr4_1:65160818-65160837 | None:intergenic | 35.0% |
! | GTTTTGTGTTGAAGAGTGAA+GGG | - | chr4_1:65160819-65160838 | None:intergenic | 35.0% |
!! | AGTTTTGTGTTGAAGAGTGA+AGG | - | chr4_1:65160820-65160839 | None:intergenic | 35.0% |
CTGGGATACTCCAAATAAAT+GGG | - | chr4_1:65161033-65161052 | None:intergenic | 35.0% | |
! | TCTGGGATACTCCAAATAAA+TGG | - | chr4_1:65161034-65161053 | None:intergenic | 35.0% |
!! | GAAATGGTGGGTTTGTTATT+TGG | + | chr4_1:65161092-65161111 | Msa0564500:CDS | 35.0% |
! | ATTTGGGCTAATGAAGCTTT+TGG | + | chr4_1:65161109-65161128 | Msa0564500:CDS | 35.0% |
! | ATGAAGCTTTTGGTCCATTT+TGG | + | chr4_1:65161119-65161138 | Msa0564500:CDS | 35.0% |
! | TGAAGCTTTTGGTCCATTTT+GGG | + | chr4_1:65161120-65161139 | Msa0564500:CDS | 35.0% |
!! | GGCTACTGGAAATATTTTTG+TGG | + | chr4_1:65161154-65161173 | Msa0564500:CDS | 35.0% |
ATAGTTGGTTATACTGCAGT+TGG | + | chr4_1:65161322-65161341 | Msa0564500:CDS | 35.0% | |
CATTAACACAAAGGGCAAAA+GGG | - | chr4_1:65161362-65161381 | None:intergenic | 35.0% | |
ACATTAACACAAAGGGCAAA+AGG | - | chr4_1:65161363-65161382 | None:intergenic | 35.0% | |
CCTAAACTTAACCATCTACT+AGG | - | chr4_1:65161412-65161431 | None:intergenic | 35.0% | |
CCTAGTAGATGGTTAAGTTT+AGG | + | chr4_1:65161409-65161428 | Msa0564500:CDS | 35.0% | |
! | ATGGTTAAGTTTAGGACAAG+AGG | + | chr4_1:65161417-65161436 | Msa0564500:CDS | 35.0% |
! | TGGTTAAGTTTAGGACAAGA+GGG | + | chr4_1:65161418-65161437 | Msa0564500:CDS | 35.0% |
! | CCAGCAAATAACAAAGCTTT+TGG | - | chr4_1:65161553-65161572 | None:intergenic | 35.0% |
!! | CCAAAAGCTTTGTTATTTGC+TGG | + | chr4_1:65161550-65161569 | Msa0564500:CDS | 35.0% |
!! | TGCTGGATTGTTAACTTGTT+TGG | + | chr4_1:65161567-65161586 | Msa0564500:CDS | 35.0% |
!! | GCTGGATTGTTAACTTGTTT+GGG | + | chr4_1:65161568-65161587 | Msa0564500:CDS | 35.0% |
CTGGGAATTGGTTGAAATAT+TGG | + | chr4_1:65161686-65161705 | Msa0564500:CDS | 35.0% | |
!!! | GGTGCTGTTTTGTCAATTAT+TGG | + | chr4_1:65161718-65161737 | Msa0564500:CDS | 35.0% |
! | AGTGCTGCATATCAACTTTT+AGG | + | chr4_1:65161763-65161782 | Msa0564500:CDS | 35.0% |
!! | ACTTTTAGGTATGTCTGACT+TGG | + | chr4_1:65161777-65161796 | Msa0564500:CDS | 35.0% |
!! | CTTTTAGGTATGTCTGACTT+GGG | + | chr4_1:65161778-65161797 | Msa0564500:CDS | 35.0% |
CAAAGTTGTTTAACACACCT+TGG | + | chr4_1:65161830-65161849 | Msa0564500:CDS | 35.0% | |
GAAATCAAAATTGCCATCCA+AGG | - | chr4_1:65161850-65161869 | None:intergenic | 35.0% | |
! | TTGCTTCTTTCCTTAAGTTG+AGG | + | chr4_1:65161962-65161981 | Msa0564500:CDS | 35.0% |
AATCCAAGTGGAACCTTATA+AGG | - | chr4_1:65162012-65162031 | None:intergenic | 35.0% | |
TGAATCTTTGCAAGTCTAAG+AGG | + | chr4_1:65162160-65162179 | Msa0564500:CDS | 35.0% | |
!! | CTCATCTACTTTGAGGTATC+TGG | + | chr4_1:65160935-65160954 | Msa0564500:CDS | 40.0% |
!! | ATCTACTTTGAGGTATCTGG+TGG | + | chr4_1:65160938-65160957 | Msa0564500:CDS | 40.0% |
! | ACTGTTGCTTCTTCACCATA+AGG | - | chr4_1:65160965-65160984 | None:intergenic | 40.0% |
!!! | GGTCCACTTTTTGCAATTCT+TGG | + | chr4_1:65160995-65161014 | Msa0564500:CDS | 40.0% |
TAACAAACCCACCATTTCCA+GGG | - | chr4_1:65161090-65161109 | None:intergenic | 40.0% | |
ATAACAAACCCACCATTTCC+AGG | - | chr4_1:65161091-65161110 | None:intergenic | 40.0% | |
! | GAAGCTTTTGGTCCATTTTG+GGG | + | chr4_1:65161121-65161140 | Msa0564500:CDS | 40.0% |
! | AAGCTTTTGGTCCATTTTGG+GGG | + | chr4_1:65161122-65161141 | Msa0564500:CDS | 40.0% |
! | GTGATTCCTGTTTTGTCTTC+AGG | + | chr4_1:65161229-65161248 | Msa0564500:CDS | 40.0% |
GGTAAACCTGAAGACAAAAC+AGG | - | chr4_1:65161238-65161257 | None:intergenic | 40.0% | |
ACAAAAACTGACACTGTACG+AGG | - | chr4_1:65161259-65161278 | None:intergenic | 40.0% | |
! | GGTTATACTGCAGTTGGTTT+AGG | + | chr4_1:65161328-65161347 | Msa0564500:CDS | 40.0% |
! | AAGAGGGTGTGGAAAAAGAT+TGG | + | chr4_1:65161434-65161453 | Msa0564500:CDS | 40.0% |
! | ATTCCTTTGTTGGCTACTAC+TGG | + | chr4_1:65161598-65161617 | Msa0564500:CDS | 40.0% |
! | TGCCACTTGATCAAGAAGTT+TGG | + | chr4_1:65161626-65161645 | Msa0564500:CDS | 40.0% |
GCCACTTGATCAAGAAGTTT+GGG | + | chr4_1:65161627-65161646 | Msa0564500:CDS | 40.0% | |
ACCCAAACTTCTTGATCAAG+TGG | - | chr4_1:65161631-65161650 | None:intergenic | 40.0% | |
CTTGATCAAGAAGTTTGGGT+TGG | + | chr4_1:65161631-65161650 | Msa0564500:CDS | 40.0% | |
!! | ATCAAGAAGTTTGGGTTGGT+GGG | + | chr4_1:65161635-65161654 | Msa0564500:CDS | 40.0% |
GTTGTTTAACACACCTTGGA+TGG | + | chr4_1:65161834-65161853 | Msa0564500:CDS | 40.0% | |
AGACCTTATAAGGTTCCACT+TGG | + | chr4_1:65162006-65162025 | Msa0564500:CDS | 40.0% | |
AAGGTTCCACTTGGATTCTT+TGG | + | chr4_1:65162015-65162034 | Msa0564500:CDS | 40.0% | |
! | TTTTGTTCCATCTGTGCTGT+TGG | + | chr4_1:65162053-65162072 | Msa0564500:CDS | 40.0% |
ACATAAACCAACAGCACAGA+TGG | - | chr4_1:65162063-65162082 | None:intergenic | 40.0% | |
ATCTTTGCAAGTCTAAGAGG+TGG | + | chr4_1:65162163-65162182 | Msa0564500:CDS | 40.0% | |
CAGTGGAGTAGGAGATAAAT+TGG | + | chr4_1:65162194-65162213 | Msa0564500:CDS | 40.0% | |
!! | CTCATCTACTTTGAGGTATC+TGG | + | chr4_1:65160935-65160954 | Msa0564500:CDS | 40.0% |
!! | ATCTACTTTGAGGTATCTGG+TGG | + | chr4_1:65160938-65160957 | Msa0564500:CDS | 40.0% |
! | ACTGTTGCTTCTTCACCATA+AGG | - | chr4_1:65160965-65160984 | None:intergenic | 40.0% |
!!! | GGTCCACTTTTTGCAATTCT+TGG | + | chr4_1:65160995-65161014 | Msa0564500:CDS | 40.0% |
TAACAAACCCACCATTTCCA+GGG | - | chr4_1:65161090-65161109 | None:intergenic | 40.0% | |
ATAACAAACCCACCATTTCC+AGG | - | chr4_1:65161091-65161110 | None:intergenic | 40.0% | |
! | GAAGCTTTTGGTCCATTTTG+GGG | + | chr4_1:65161121-65161140 | Msa0564500:CDS | 40.0% |
! | AAGCTTTTGGTCCATTTTGG+GGG | + | chr4_1:65161122-65161141 | Msa0564500:CDS | 40.0% |
! | GTGATTCCTGTTTTGTCTTC+AGG | + | chr4_1:65161229-65161248 | Msa0564500:CDS | 40.0% |
GGTAAACCTGAAGACAAAAC+AGG | - | chr4_1:65161238-65161257 | None:intergenic | 40.0% | |
ACAAAAACTGACACTGTACG+AGG | - | chr4_1:65161259-65161278 | None:intergenic | 40.0% | |
! | GGTTATACTGCAGTTGGTTT+AGG | + | chr4_1:65161328-65161347 | Msa0564500:CDS | 40.0% |
! | AAGAGGGTGTGGAAAAAGAT+TGG | + | chr4_1:65161434-65161453 | Msa0564500:CDS | 40.0% |
! | ATTCCTTTGTTGGCTACTAC+TGG | + | chr4_1:65161598-65161617 | Msa0564500:CDS | 40.0% |
! | TGCCACTTGATCAAGAAGTT+TGG | + | chr4_1:65161626-65161645 | Msa0564500:CDS | 40.0% |
GCCACTTGATCAAGAAGTTT+GGG | + | chr4_1:65161627-65161646 | Msa0564500:CDS | 40.0% | |
ACCCAAACTTCTTGATCAAG+TGG | - | chr4_1:65161631-65161650 | None:intergenic | 40.0% | |
CTTGATCAAGAAGTTTGGGT+TGG | + | chr4_1:65161631-65161650 | Msa0564500:CDS | 40.0% | |
!! | ATCAAGAAGTTTGGGTTGGT+GGG | + | chr4_1:65161635-65161654 | Msa0564500:CDS | 40.0% |
GTTGTTTAACACACCTTGGA+TGG | + | chr4_1:65161834-65161853 | Msa0564500:CDS | 40.0% | |
AGACCTTATAAGGTTCCACT+TGG | + | chr4_1:65162006-65162025 | Msa0564500:CDS | 40.0% | |
AAGGTTCCACTTGGATTCTT+TGG | + | chr4_1:65162015-65162034 | Msa0564500:CDS | 40.0% | |
! | TTTTGTTCCATCTGTGCTGT+TGG | + | chr4_1:65162053-65162072 | Msa0564500:CDS | 40.0% |
ACATAAACCAACAGCACAGA+TGG | - | chr4_1:65162063-65162082 | None:intergenic | 40.0% | |
ATCTTTGCAAGTCTAAGAGG+TGG | + | chr4_1:65162163-65162182 | Msa0564500:CDS | 40.0% | |
CAGTGGAGTAGGAGATAAAT+TGG | + | chr4_1:65162194-65162213 | Msa0564500:CDS | 40.0% | |
CTGCAGTTAACAGAGCTTCT+GGG | - | chr4_1:65161051-65161070 | None:intergenic | 45.0% | |
TCTGCAGTTAACAGAGCTTC+TGG | - | chr4_1:65161052-65161071 | None:intergenic | 45.0% | |
GAATTAGCTACAGCATTCCC+TGG | + | chr4_1:65161070-65161089 | Msa0564500:CDS | 45.0% | |
!! | TCCATTTTGGGGGTCTCTTA+TGG | + | chr4_1:65161132-65161151 | Msa0564500:CDS | 45.0% |
!! | CCATTTTGGGGGTCTCTTAT+GGG | + | chr4_1:65161133-65161152 | Msa0564500:CDS | 45.0% |
! | AAGTTTAGGACAAGAGGGTG+TGG | + | chr4_1:65161423-65161442 | Msa0564500:CDS | 45.0% |
GATAGTGCTAGCACTTTAGC+TGG | + | chr4_1:65161499-65161518 | Msa0564500:CDS | 45.0% | |
!! | GATCAAGAAGTTTGGGTTGG+TGG | + | chr4_1:65161634-65161653 | Msa0564500:CDS | 45.0% |
!! | TGGTGGGTATTTTGCACATG+TGG | + | chr4_1:65161651-65161670 | Msa0564500:CDS | 45.0% |
!! | ATGTGGCTGGTTTGATTGCT+GGG | + | chr4_1:65161668-65161687 | Msa0564500:CDS | 45.0% |
! | CTGGTTTGATTGCTGGGAAT+TGG | + | chr4_1:65161674-65161693 | Msa0564500:CDS | 45.0% |
!! | AAGAGGTGGATTGAGTTCAG+TGG | + | chr4_1:65162177-65162196 | Msa0564500:CDS | 45.0% |
TGGATTGAGTTCAGTGGAGT+AGG | + | chr4_1:65162183-65162202 | Msa0564500:CDS | 45.0% | |
CTGCAGTTAACAGAGCTTCT+GGG | - | chr4_1:65161051-65161070 | None:intergenic | 45.0% | |
TCTGCAGTTAACAGAGCTTC+TGG | - | chr4_1:65161052-65161071 | None:intergenic | 45.0% | |
GAATTAGCTACAGCATTCCC+TGG | + | chr4_1:65161070-65161089 | Msa0564500:CDS | 45.0% | |
!! | TCCATTTTGGGGGTCTCTTA+TGG | + | chr4_1:65161132-65161151 | Msa0564500:CDS | 45.0% |
!! | CCATTTTGGGGGTCTCTTAT+GGG | + | chr4_1:65161133-65161152 | Msa0564500:CDS | 45.0% |
! | AAGTTTAGGACAAGAGGGTG+TGG | + | chr4_1:65161423-65161442 | Msa0564500:CDS | 45.0% |
GATAGTGCTAGCACTTTAGC+TGG | + | chr4_1:65161499-65161518 | Msa0564500:CDS | 45.0% | |
!! | GATCAAGAAGTTTGGGTTGG+TGG | + | chr4_1:65161634-65161653 | Msa0564500:CDS | 45.0% |
!! | TGGTGGGTATTTTGCACATG+TGG | + | chr4_1:65161651-65161670 | Msa0564500:CDS | 45.0% |
!! | ATGTGGCTGGTTTGATTGCT+GGG | + | chr4_1:65161668-65161687 | Msa0564500:CDS | 45.0% |
! | CTGGTTTGATTGCTGGGAAT+TGG | + | chr4_1:65161674-65161693 | Msa0564500:CDS | 45.0% |
!! | AAGAGGTGGATTGAGTTCAG+TGG | + | chr4_1:65162177-65162196 | Msa0564500:CDS | 45.0% |
TGGATTGAGTTCAGTGGAGT+AGG | + | chr4_1:65162183-65162202 | Msa0564500:CDS | 45.0% | |
! | GAGGTATCTGGTGGACCTTA+TGG | + | chr4_1:65160947-65160966 | Msa0564500:CDS | 50.0% |
! | GAAGCAACAGTAAGTGCTGC+AGG | + | chr4_1:65160974-65160993 | Msa0564500:CDS | 50.0% |
GCTACAGCATTCCCTGGAAA+TGG | + | chr4_1:65161076-65161095 | Msa0564500:CDS | 50.0% | |
ACAGCATTCCCTGGAAATGG+TGG | + | chr4_1:65161079-65161098 | Msa0564500:CDS | 50.0% | |
CAGCATTCCCTGGAAATGGT+GGG | + | chr4_1:65161080-65161099 | Msa0564500:CDS | 50.0% | |
CCCATAAGAGACCCCCAAAA+TGG | - | chr4_1:65161136-65161155 | None:intergenic | 50.0% | |
GCACCAGTAGTAGCCAACAA+AGG | - | chr4_1:65161604-65161623 | None:intergenic | 50.0% | |
! | GGGTATTTTGCACATGTGGC+TGG | + | chr4_1:65161655-65161674 | Msa0564500:CDS | 50.0% |
!! | CATGTGGCTGGTTTGATTGC+TGG | + | chr4_1:65161667-65161686 | Msa0564500:CDS | 50.0% |
! | GAGGTATCTGGTGGACCTTA+TGG | + | chr4_1:65160947-65160966 | Msa0564500:CDS | 50.0% |
! | GAAGCAACAGTAAGTGCTGC+AGG | + | chr4_1:65160974-65160993 | Msa0564500:CDS | 50.0% |
GCTACAGCATTCCCTGGAAA+TGG | + | chr4_1:65161076-65161095 | Msa0564500:CDS | 50.0% | |
ACAGCATTCCCTGGAAATGG+TGG | + | chr4_1:65161079-65161098 | Msa0564500:CDS | 50.0% | |
CAGCATTCCCTGGAAATGGT+GGG | + | chr4_1:65161080-65161099 | Msa0564500:CDS | 50.0% | |
CCCATAAGAGACCCCCAAAA+TGG | - | chr4_1:65161136-65161155 | None:intergenic | 50.0% | |
GCACCAGTAGTAGCCAACAA+AGG | - | chr4_1:65161604-65161623 | None:intergenic | 50.0% | |
! | GGGTATTTTGCACATGTGGC+TGG | + | chr4_1:65161655-65161674 | Msa0564500:CDS | 50.0% |
!! | CATGTGGCTGGTTTGATTGC+TGG | + | chr4_1:65161667-65161686 | Msa0564500:CDS | 50.0% |
! | GGGGGTCTCTTATGGGCTAC+TGG | + | chr4_1:65161140-65161159 | Msa0564500:CDS | 60.0% |
! | GGGGGTCTCTTATGGGCTAC+TGG | + | chr4_1:65161140-65161159 | Msa0564500:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 65160794 | 65162242 | 65160794 | ID=Msa0564500;Name=Msa0564500 |
chr4_1 | mRNA | 65160794 | 65162242 | 65160794 | ID=Msa0564500-mRNA-1;Parent=Msa0564500;Name=Msa0564500-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|482 |
chr4_1 | exon | 65160794 | 65162242 | 65160794 | ID=Msa0564500-mRNA-1:exon:20939;Parent=Msa0564500-mRNA-1 |
chr4_1 | CDS | 65160794 | 65162242 | 65160794 | ID=Msa0564500-mRNA-1:cds;Parent=Msa0564500-mRNA-1 |
Gene Sequence |
Protein sequence |