Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617840 | XP_003629706.1 | 96.868 | 479 | 15 | 0 | 1 | 479 | 1 | 479 | 0.0 | 931 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617840 | sp|Q9LHN7|PHSC_ARATH | 60.600 | 467 | 181 | 2 | 13 | 479 | 4 | 467 | 0.0 | 571 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0564500 | Msa0617840 | 0.850295 | 1.862743e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617840 | MtrunA17_Chr8g0378551 | 96.868 | 479 | 15 | 0 | 1 | 479 | 1 | 479 | 0.0 | 931 |
Msa0617840 | MtrunA17_Chr5g0426641 | 63.087 | 447 | 163 | 1 | 35 | 481 | 20 | 464 | 0.0 | 577 |
Msa0617840 | MtrunA17_Chr1g0211371 | 48.444 | 450 | 229 | 2 | 26 | 475 | 12 | 458 | 8.35e-152 | 440 |
Msa0617840 | MtrunA17_Chr3g0094551 | 47.846 | 441 | 227 | 2 | 38 | 478 | 17 | 454 | 8.01e-149 | 433 |
Msa0617840 | MtrunA17_Chr5g0409251 | 47.273 | 440 | 230 | 2 | 28 | 467 | 18 | 455 | 4.05e-147 | 429 |
Msa0617840 | MtrunA17_Chr5g0393681 | 48.292 | 439 | 221 | 5 | 33 | 469 | 3 | 437 | 4.11e-133 | 394 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617840 | AT3G13620.1 | 60.600 | 467 | 181 | 2 | 13 | 479 | 4 | 467 | 0.0 | 571 |
Msa0617840 | AT1G31830.1 | 48.132 | 455 | 232 | 3 | 26 | 479 | 34 | 485 | 4.77e-156 | 452 |
Msa0617840 | AT1G31830.2 | 48.132 | 455 | 232 | 3 | 26 | 479 | 18 | 469 | 6.25e-156 | 452 |
Msa0617840 | AT5G05630.1 | 47.222 | 468 | 240 | 4 | 6 | 467 | 13 | 479 | 6.39e-152 | 442 |
Msa0617840 | AT1G31820.1 | 48.478 | 460 | 227 | 3 | 29 | 481 | 25 | 481 | 9.11e-152 | 441 |
Msa0617840 | AT3G19553.1 | 50.972 | 463 | 214 | 5 | 27 | 479 | 9 | 468 | 1.14e-147 | 431 |
Find 80 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATGGTGGGTTTGTTATT+TGG | 0.119761 | 4_2:+68526571 | Msa0617840:CDS |
CTCATCTACTTTGAGGTATC+TGG | 0.167645 | 4_2:+68526414 | Msa0617840:CDS |
GGTGCTTTCTTAACATTCTT+AGG | 0.174504 | 4_2:+68527596 | Msa0617840:CDS |
TTGAATCTTCTTCTTCTCTT+TGG | 0.199488 | 4_2:-68526341 | None:intergenic |
CTGGGAATTGGTTGAAATAT+TGG | 0.212399 | 4_2:+68527165 | Msa0617840:CDS |
TCTGGGATACTCCAAATAAA+TGG | 0.218421 | 4_2:-68526510 | None:intergenic |
AAGGTTCCACTTGGATTCTT+TGG | 0.223454 | 4_2:+68527494 | Msa0617840:CDS |
TGCTGGATTGTTAACTTGTT+TGG | 0.231778 | 4_2:+68527046 | Msa0617840:CDS |
ACCAGCCACATATACAATTT+TGG | 0.241109 | 4_2:-68527576 | None:intergenic |
TCTGCAGTTAACAGAGCTTC+TGG | 0.247712 | 4_2:-68526528 | None:intergenic |
AAATGGTGGGTTTGTTATTT+GGG | 0.257640 | 4_2:+68526572 | Msa0617840:CDS |
CCAGCAAATAACAAAGCTTT+TGG | 0.261342 | 4_2:-68527029 | None:intergenic |
TTGAAATATTGGATGGAAAT+TGG | 0.269249 | 4_2:+68527176 | Msa0617840:CDS |
GGTTATACTGCAGTTGGTTT+AGG | 0.285281 | 4_2:+68526807 | Msa0617840:CDS |
CCAAAAGCTTTGTTATTTGC+TGG | 0.287356 | 4_2:+68527029 | Msa0617840:CDS |
ATTTGGGCTAATGAAGCTTT+TGG | 0.289227 | 4_2:+68526588 | Msa0617840:CDS |
TACAATGAAAAGACCTTATA+AGG | 0.296408 | 4_2:+68527475 | Msa0617840:CDS |
AATCCAAGTGGAACCTTATA+AGG | 0.306194 | 4_2:-68527488 | None:intergenic |
TGCCACTTGATCAAGAAGTT+TGG | 0.318408 | 4_2:+68527105 | Msa0617840:CDS |
CTGGTTTGATTGCTGGGAAT+TGG | 0.320667 | 4_2:+68527153 | Msa0617840:CDS |
GGGTTATATAATTCCTTTGT+TGG | 0.320719 | 4_2:+68527067 | Msa0617840:CDS |
AGATAATCTATACATAGAAT+TGG | 0.327586 | 4_2:-68526678 | None:intergenic |
GTATAGTTTAGGTATGCTTT+TGG | 0.330507 | 4_2:+68527415 | Msa0617840:CDS |
CCTAGTAGATGGTTAAGTTT+AGG | 0.331119 | 4_2:+68526888 | Msa0617840:CDS |
GCCACTTGATCAAGAAGTTT+GGG | 0.332993 | 4_2:+68527106 | Msa0617840:CDS |
CATGTGGCTGGTTTGATTGC+TGG | 0.333123 | 4_2:+68527146 | Msa0617840:CDS |
CCGTGGAGTAGGAGATAAAT+TGG | 0.335154 | 4_2:+68527673 | Msa0617840:CDS |
GCTGGATTGTTAACTTGTTT+GGG | 0.336043 | 4_2:+68527047 | Msa0617840:CDS |
AATCTTTCTCATCTACTTTG+AGG | 0.359694 | 4_2:+68526407 | Msa0617840:CDS |
GAGGTATCTGGTGGACCTTA+TGG | 0.387052 | 4_2:+68526426 | Msa0617840:CDS |
ATTCCTTTGTTGGCTACTAC+TGG | 0.396954 | 4_2:+68527077 | Msa0617840:CDS |
ATAACAAACCCACCATTTCC+AGG | 0.406978 | 4_2:-68526567 | None:intergenic |
GTGCTTTCTTAACATTCTTA+GGG | 0.407305 | 4_2:+68527597 | Msa0617840:CDS |
ATGTGGCTGGTTTGATTGCT+GGG | 0.424967 | 4_2:+68527147 | Msa0617840:CDS |
TATTCTGGTTTAGCTATAGT+TGG | 0.426561 | 4_2:+68526786 | Msa0617840:CDS |
ACATTAACACAAAGGGCAAA+AGG | 0.443673 | 4_2:-68526839 | None:intergenic |
ACTGTTGCTTCTTCACCATA+AGG | 0.446104 | 4_2:-68526441 | None:intergenic |
CTGGGATACTCCAAATAAAT+GGG | 0.448636 | 4_2:-68526509 | None:intergenic |
CTGCAGTTAACAGAGCTTCT+GGG | 0.454168 | 4_2:-68526527 | None:intergenic |
AAGTAGATGAGAAAGATTAG+AGG | 0.454596 | 4_2:-68526402 | None:intergenic |
CTAAAATTGATCCTAGTAGA+TGG | 0.462759 | 4_2:+68526877 | Msa0617840:CDS |
GCTACAGCATTCCCTGGAAA+TGG | 0.470404 | 4_2:+68526555 | Msa0617840:CDS |
GATAATCTATACATAGAATT+GGG | 0.472908 | 4_2:-68526677 | None:intergenic |
ATCAAAGACATTAACACAAA+GGG | 0.476966 | 4_2:-68526846 | None:intergenic |
CCTAAACTTAACCATCTACT+AGG | 0.478755 | 4_2:-68526888 | None:intergenic |
ATGGTTAAGTTTAGGACAAG+AGG | 0.482198 | 4_2:+68526896 | Msa0617840:CDS |
TGAATCTTTGCAAGTCTAAG+AGG | 0.493630 | 4_2:+68527639 | Msa0617840:CDS |
ATCAAGAAGTTTGGGTTGGT+GGG | 0.495054 | 4_2:+68527114 | Msa0617840:CDS |
GATCAAGAAGTTTGGGTTGG+TGG | 0.497496 | 4_2:+68527113 | Msa0617840:CDS |
GGTAAACCTGAAGACAAAAC+AGG | 0.502863 | 4_2:-68526714 | None:intergenic |
CATTAACACAAAGGGCAAAA+GGG | 0.503892 | 4_2:-68526838 | None:intergenic |
GATAGTGCTAGCACTTTAGC+TGG | 0.508343 | 4_2:+68526978 | Msa0617840:CDS |
ATAGTTGGTTATACTGCAGT+TGG | 0.509080 | 4_2:+68526801 | Msa0617840:CDS |
GAAGCAACAGTAAGTGCTGC+AGG | 0.513783 | 4_2:+68526453 | Msa0617840:CDS |
AGTAGATGAGAAAGATTAGA+GGG | 0.514522 | 4_2:-68526401 | None:intergenic |
TGGTTAAGTTTAGGACAAGA+GGG | 0.515356 | 4_2:+68526897 | Msa0617840:CDS |
AGACCTTATAAGGTTCCACT+TGG | 0.526727 | 4_2:+68527485 | Msa0617840:CDS |
ACCAAAATTGTATATGTGGC+TGG | 0.533724 | 4_2:+68527575 | Msa0617840:CDS |
TGCTACCAAAATTGTATATG+TGG | 0.535048 | 4_2:+68527571 | Msa0617840:CDS |
TGGATTGAGTTCCGTGGAGT+AGG | 0.537751 | 4_2:+68527662 | Msa0617840:CDS |
ACATAAACCAACAGCACAGA+TGG | 0.538480 | 4_2:-68527539 | None:intergenic |
GTGGTTTAACACACCTTCGA+TGG | 0.538701 | 4_2:+68527313 | Msa0617840:CDS |
CTTGATCAAGAAGTTTGGGT+TGG | 0.540498 | 4_2:+68527110 | Msa0617840:CDS |
TTGCTTCTTTCCTTAAGTTG+AGG | 0.541531 | 4_2:+68527441 | Msa0617840:CDS |
ATCTACTTTGAGGTATCTGG+TGG | 0.545094 | 4_2:+68526417 | Msa0617840:CDS |
ACCCAAACTTCTTGATCAAG+TGG | 0.548962 | 4_2:-68527107 | None:intergenic |
ACAGCATTCCCTGGAAATGG+TGG | 0.558001 | 4_2:+68526558 | Msa0617840:CDS |
ATTTCAACAATAATATCACT+TGG | 0.558408 | 4_2:+68527344 | Msa0617840:CDS |
GAATTAGCTACAGCATTCCC+TGG | 0.558740 | 4_2:+68526549 | Msa0617840:CDS |
TAACAAACCCACCATTTCCA+GGG | 0.582040 | 4_2:-68526566 | None:intergenic |
ATCTTTGCAAGTCTAAGAGG+TGG | 0.589872 | 4_2:+68527642 | Msa0617840:CDS |
CAGCATTCCCTGGAAATGGT+GGG | 0.590354 | 4_2:+68526559 | Msa0617840:CDS |
GAATTGGTTGAAATATTGGA+TGG | 0.593097 | 4_2:+68527169 | Msa0617840:CDS |
GAAATCAAAATTGCCATCGA+AGG | 0.614144 | 4_2:-68527326 | None:intergenic |
ATTAAACCAAAGAATCCAAG+TGG | 0.618042 | 4_2:-68527500 | None:intergenic |
AATCAAAGACATTAACACAA+AGG | 0.619734 | 4_2:-68526847 | None:intergenic |
CCAATTTATCTCCTACTCCA+CGG | 0.637188 | 4_2:-68527673 | None:intergenic |
AAGAGGTGGATTGAGTTCCG+TGG | 0.659452 | 4_2:+68527656 | Msa0617840:CDS |
GCACCAGTAGTAGCCAACAA+AGG | 0.678385 | 4_2:-68527080 | None:intergenic |
TATTTGGTGAAAGATCAAAG+TGG | 0.716626 | 4_2:+68527294 | Msa0617840:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTCAATACTATTTTT+TGG | + | chr4_2:68526940-68526959 | Msa0617840:CDS | 10.0% |
!!! | TTTTTTTCAATACTATTTTT+TGG | + | chr4_2:68526940-68526959 | Msa0617840:CDS | 10.0% |
!!! | TTATAATTTTCCCATTTATT+TGG | + | chr4_2:68526499-68526518 | Msa0617840:CDS | 15.0% |
!!! | GTTAATTTTTTGTATAGTTT+AGG | + | chr4_2:68527404-68527423 | Msa0617840:CDS | 15.0% |
!!! | TTATAATTTTCCCATTTATT+TGG | + | chr4_2:68526499-68526518 | Msa0617840:CDS | 15.0% |
!!! | GTTAATTTTTTGTATAGTTT+AGG | + | chr4_2:68527404-68527423 | Msa0617840:CDS | 15.0% |
!!! | TTTTTTTGTGATTTGGTTTT+GGG | - | chr4_2:68526369-68526388 | None:intergenic | 20.0% |
!! | GATAATCTATACATAGAATT+GGG | - | chr4_2:68526680-68526699 | None:intergenic | 20.0% |
!! | AGATAATCTATACATAGAAT+TGG | - | chr4_2:68526681-68526700 | None:intergenic | 20.0% |
!!! | TTGTCTTTTTTGAATTATTC+TGG | + | chr4_2:68526771-68526790 | Msa0617840:CDS | 20.0% |
!!! | TTTTTTGGAACTTGAATTTT+TGG | + | chr4_2:68526955-68526974 | Msa0617840:CDS | 20.0% |
!!! | TTTTTGGAACTTGAATTTTT+GGG | + | chr4_2:68526956-68526975 | Msa0617840:CDS | 20.0% |
!! | ATTTCAACAATAATATCACT+TGG | + | chr4_2:68527344-68527363 | Msa0617840:CDS | 20.0% |
!!! | TTTTTTTGTGATTTGGTTTT+GGG | - | chr4_2:68526369-68526388 | None:intergenic | 20.0% |
!! | GATAATCTATACATAGAATT+GGG | - | chr4_2:68526680-68526699 | None:intergenic | 20.0% |
!! | AGATAATCTATACATAGAAT+TGG | - | chr4_2:68526681-68526700 | None:intergenic | 20.0% |
!!! | TTGTCTTTTTTGAATTATTC+TGG | + | chr4_2:68526771-68526790 | Msa0617840:CDS | 20.0% |
!!! | TTTTTTGGAACTTGAATTTT+TGG | + | chr4_2:68526955-68526974 | Msa0617840:CDS | 20.0% |
!!! | TTTTTGGAACTTGAATTTTT+GGG | + | chr4_2:68526956-68526975 | Msa0617840:CDS | 20.0% |
!! | ATTTCAACAATAATATCACT+TGG | + | chr4_2:68527344-68527363 | Msa0617840:CDS | 20.0% |
!!! | TTTTTTGTGATTTGGTTTTG+GGG | - | chr4_2:68526368-68526387 | None:intergenic | 25.0% |
!!! | CTTTTTTTGTGATTTGGTTT+TGG | - | chr4_2:68526370-68526389 | None:intergenic | 25.0% |
! | ATCAAAGACATTAACACAAA+GGG | - | chr4_2:68526849-68526868 | None:intergenic | 25.0% |
! | AATCAAAGACATTAACACAA+AGG | - | chr4_2:68526850-68526869 | None:intergenic | 25.0% |
! | TTGAAATATTGGATGGAAAT+TGG | + | chr4_2:68527176-68527195 | Msa0617840:CDS | 25.0% |
! | GGATTCATACCAAAAATATT+TGG | + | chr4_2:68527278-68527297 | Msa0617840:CDS | 25.0% |
!! | GATCTTTCACCAAATATTTT+TGG | - | chr4_2:68527290-68527309 | None:intergenic | 25.0% |
!! | TATAAGGTCTTTTCATTGTA+GGG | - | chr4_2:68527475-68527494 | None:intergenic | 25.0% |
!! | TTATAAGGTCTTTTCATTGT+AGG | - | chr4_2:68527476-68527495 | None:intergenic | 25.0% |
! | TACAATGAAAAGACCTTATA+AGG | + | chr4_2:68527475-68527494 | Msa0617840:CDS | 25.0% |
!!! | TTTTTTGTGATTTGGTTTTG+GGG | - | chr4_2:68526368-68526387 | None:intergenic | 25.0% |
!!! | CTTTTTTTGTGATTTGGTTT+TGG | - | chr4_2:68526370-68526389 | None:intergenic | 25.0% |
! | ATCAAAGACATTAACACAAA+GGG | - | chr4_2:68526849-68526868 | None:intergenic | 25.0% |
! | AATCAAAGACATTAACACAA+AGG | - | chr4_2:68526850-68526869 | None:intergenic | 25.0% |
! | TTGAAATATTGGATGGAAAT+TGG | + | chr4_2:68527176-68527195 | Msa0617840:CDS | 25.0% |
! | GGATTCATACCAAAAATATT+TGG | + | chr4_2:68527278-68527297 | Msa0617840:CDS | 25.0% |
!! | GATCTTTCACCAAATATTTT+TGG | - | chr4_2:68527290-68527309 | None:intergenic | 25.0% |
!! | TATAAGGTCTTTTCATTGTA+GGG | - | chr4_2:68527475-68527494 | None:intergenic | 25.0% |
!! | TTATAAGGTCTTTTCATTGT+AGG | - | chr4_2:68527476-68527495 | None:intergenic | 25.0% |
! | TACAATGAAAAGACCTTATA+AGG | + | chr4_2:68527475-68527494 | Msa0617840:CDS | 25.0% |
TTGAATCTTCTTCTTCTCTT+TGG | - | chr4_2:68526344-68526363 | None:intergenic | 30.0% | |
!!! | TGCTAGCTTTTTTTGTGATT+TGG | - | chr4_2:68526376-68526395 | None:intergenic | 30.0% |
AGTAGATGAGAAAGATTAGA+GGG | - | chr4_2:68526404-68526423 | None:intergenic | 30.0% | |
AAGTAGATGAGAAAGATTAG+AGG | - | chr4_2:68526405-68526424 | None:intergenic | 30.0% | |
AATCTTTCTCATCTACTTTG+AGG | + | chr4_2:68526407-68526426 | Msa0617840:CDS | 30.0% | |
AATCCAAGAATTGCAAAAAG+TGG | - | chr4_2:68526480-68526499 | None:intergenic | 30.0% | |
!! | AAATGGTGGGTTTGTTATTT+GGG | + | chr4_2:68526572-68526591 | Msa0617840:CDS | 30.0% |
!! | TATTCTGGTTTAGCTATAGT+TGG | + | chr4_2:68526786-68526805 | Msa0617840:CDS | 30.0% |
! | CATCTACTAGGATCAATTTT+AGG | - | chr4_2:68526879-68526898 | None:intergenic | 30.0% |
CTAAAATTGATCCTAGTAGA+TGG | + | chr4_2:68526877-68526896 | Msa0617840:CDS | 30.0% | |
!! | GCTTTTGGAAAAGTTTTATG+TGG | - | chr4_2:68527017-68527036 | None:intergenic | 30.0% |
GGGTTATATAATTCCTTTGT+TGG | + | chr4_2:68527067-68527086 | Msa0617840:CDS | 30.0% | |
GAATTGGTTGAAATATTGGA+TGG | + | chr4_2:68527169-68527188 | Msa0617840:CDS | 30.0% | |
! | TATTTGGTGAAAGATCAAAG+TGG | + | chr4_2:68527294-68527313 | Msa0617840:CDS | 30.0% |
! | GTATAGTTTAGGTATGCTTT+TGG | + | chr4_2:68527415-68527434 | Msa0617840:CDS | 30.0% |
!!! | GGAATTTTTTCCTCAACTTA+AGG | - | chr4_2:68527454-68527473 | None:intergenic | 30.0% |
ATTAAACCAAAGAATCCAAG+TGG | - | chr4_2:68527503-68527522 | None:intergenic | 30.0% | |
TGCTACCAAAATTGTATATG+TGG | + | chr4_2:68527571-68527590 | Msa0617840:CDS | 30.0% | |
GTGCTTTCTTAACATTCTTA+GGG | + | chr4_2:68527597-68527616 | Msa0617840:CDS | 30.0% | |
TTGAATCTTCTTCTTCTCTT+TGG | - | chr4_2:68526344-68526363 | None:intergenic | 30.0% | |
!!! | TGCTAGCTTTTTTTGTGATT+TGG | - | chr4_2:68526376-68526395 | None:intergenic | 30.0% |
AGTAGATGAGAAAGATTAGA+GGG | - | chr4_2:68526404-68526423 | None:intergenic | 30.0% | |
AAGTAGATGAGAAAGATTAG+AGG | - | chr4_2:68526405-68526424 | None:intergenic | 30.0% | |
AATCTTTCTCATCTACTTTG+AGG | + | chr4_2:68526407-68526426 | Msa0617840:CDS | 30.0% | |
AATCCAAGAATTGCAAAAAG+TGG | - | chr4_2:68526480-68526499 | None:intergenic | 30.0% | |
!! | AAATGGTGGGTTTGTTATTT+GGG | + | chr4_2:68526572-68526591 | Msa0617840:CDS | 30.0% |
!! | TATTCTGGTTTAGCTATAGT+TGG | + | chr4_2:68526786-68526805 | Msa0617840:CDS | 30.0% |
! | CATCTACTAGGATCAATTTT+AGG | - | chr4_2:68526879-68526898 | None:intergenic | 30.0% |
CTAAAATTGATCCTAGTAGA+TGG | + | chr4_2:68526877-68526896 | Msa0617840:CDS | 30.0% | |
!! | GCTTTTGGAAAAGTTTTATG+TGG | - | chr4_2:68527017-68527036 | None:intergenic | 30.0% |
GGGTTATATAATTCCTTTGT+TGG | + | chr4_2:68527067-68527086 | Msa0617840:CDS | 30.0% | |
GAATTGGTTGAAATATTGGA+TGG | + | chr4_2:68527169-68527188 | Msa0617840:CDS | 30.0% | |
! | TATTTGGTGAAAGATCAAAG+TGG | + | chr4_2:68527294-68527313 | Msa0617840:CDS | 30.0% |
! | GTATAGTTTAGGTATGCTTT+TGG | + | chr4_2:68527415-68527434 | Msa0617840:CDS | 30.0% |
!!! | GGAATTTTTTCCTCAACTTA+AGG | - | chr4_2:68527454-68527473 | None:intergenic | 30.0% |
ATTAAACCAAAGAATCCAAG+TGG | - | chr4_2:68527503-68527522 | None:intergenic | 30.0% | |
TGCTACCAAAATTGTATATG+TGG | + | chr4_2:68527571-68527590 | Msa0617840:CDS | 30.0% | |
GTGCTTTCTTAACATTCTTA+GGG | + | chr4_2:68527597-68527616 | Msa0617840:CDS | 30.0% | |
! | GTTTTGTGTTGAAGAGTGAA+GGG | - | chr4_2:68526298-68526317 | None:intergenic | 35.0% |
!! | AGTTTTGTGTTGAAGAGTGA+AGG | - | chr4_2:68526299-68526318 | None:intergenic | 35.0% |
CTGGGATACTCCAAATAAAT+GGG | - | chr4_2:68526512-68526531 | None:intergenic | 35.0% | |
! | TCTGGGATACTCCAAATAAA+TGG | - | chr4_2:68526513-68526532 | None:intergenic | 35.0% |
!! | GAAATGGTGGGTTTGTTATT+TGG | + | chr4_2:68526571-68526590 | Msa0617840:CDS | 35.0% |
! | ATTTGGGCTAATGAAGCTTT+TGG | + | chr4_2:68526588-68526607 | Msa0617840:CDS | 35.0% |
! | ATGAAGCTTTTGGTCCATTT+TGG | + | chr4_2:68526598-68526617 | Msa0617840:CDS | 35.0% |
! | TGAAGCTTTTGGTCCATTTT+GGG | + | chr4_2:68526599-68526618 | Msa0617840:CDS | 35.0% |
!! | GGCTACTGGAAATATTTTTG+TGG | + | chr4_2:68526633-68526652 | Msa0617840:CDS | 35.0% |
ATAGTTGGTTATACTGCAGT+TGG | + | chr4_2:68526801-68526820 | Msa0617840:CDS | 35.0% | |
CATTAACACAAAGGGCAAAA+GGG | - | chr4_2:68526841-68526860 | None:intergenic | 35.0% | |
ACATTAACACAAAGGGCAAA+AGG | - | chr4_2:68526842-68526861 | None:intergenic | 35.0% | |
CCTAAACTTAACCATCTACT+AGG | - | chr4_2:68526891-68526910 | None:intergenic | 35.0% | |
CCTAGTAGATGGTTAAGTTT+AGG | + | chr4_2:68526888-68526907 | Msa0617840:CDS | 35.0% | |
! | ATGGTTAAGTTTAGGACAAG+AGG | + | chr4_2:68526896-68526915 | Msa0617840:CDS | 35.0% |
! | TGGTTAAGTTTAGGACAAGA+GGG | + | chr4_2:68526897-68526916 | Msa0617840:CDS | 35.0% |
! | AAGAGGGTGTAGAAAAAGAT+TGG | + | chr4_2:68526913-68526932 | Msa0617840:CDS | 35.0% |
! | CCAGCAAATAACAAAGCTTT+TGG | - | chr4_2:68527032-68527051 | None:intergenic | 35.0% |
!! | CCAAAAGCTTTGTTATTTGC+TGG | + | chr4_2:68527029-68527048 | Msa0617840:CDS | 35.0% |
!! | TGCTGGATTGTTAACTTGTT+TGG | + | chr4_2:68527046-68527065 | Msa0617840:CDS | 35.0% |
!! | GCTGGATTGTTAACTTGTTT+GGG | + | chr4_2:68527047-68527066 | Msa0617840:CDS | 35.0% |
CTGGGAATTGGTTGAAATAT+TGG | + | chr4_2:68527165-68527184 | Msa0617840:CDS | 35.0% | |
!!! | GGTGCTGTTTTGTCAATTAT+TGG | + | chr4_2:68527197-68527216 | Msa0617840:CDS | 35.0% |
! | AGTGCTGCATATCAACTTTT+AGG | + | chr4_2:68527242-68527261 | Msa0617840:CDS | 35.0% |
!! | ACTTTTAGGTATGTCTGACT+TGG | + | chr4_2:68527256-68527275 | Msa0617840:CDS | 35.0% |
!! | CTTTTAGGTATGTCTGACTT+GGG | + | chr4_2:68527257-68527276 | Msa0617840:CDS | 35.0% |
GAAATCAAAATTGCCATCGA+AGG | - | chr4_2:68527329-68527348 | None:intergenic | 35.0% | |
! | TTGCTTCTTTCCTTAAGTTG+AGG | + | chr4_2:68527441-68527460 | Msa0617840:CDS | 35.0% |
AATCCAAGTGGAACCTTATA+AGG | - | chr4_2:68527491-68527510 | None:intergenic | 35.0% | |
ACCAAAATTGTATATGTGGC+TGG | + | chr4_2:68527575-68527594 | Msa0617840:CDS | 35.0% | |
! | ACCAGCCACATATACAATTT+TGG | - | chr4_2:68527579-68527598 | None:intergenic | 35.0% |
GGTGCTTTCTTAACATTCTT+AGG | + | chr4_2:68527596-68527615 | Msa0617840:CDS | 35.0% | |
TGAATCTTTGCAAGTCTAAG+AGG | + | chr4_2:68527639-68527658 | Msa0617840:CDS | 35.0% | |
! | GTTTTGTGTTGAAGAGTGAA+GGG | - | chr4_2:68526298-68526317 | None:intergenic | 35.0% |
!! | AGTTTTGTGTTGAAGAGTGA+AGG | - | chr4_2:68526299-68526318 | None:intergenic | 35.0% |
CTGGGATACTCCAAATAAAT+GGG | - | chr4_2:68526512-68526531 | None:intergenic | 35.0% | |
! | TCTGGGATACTCCAAATAAA+TGG | - | chr4_2:68526513-68526532 | None:intergenic | 35.0% |
!! | GAAATGGTGGGTTTGTTATT+TGG | + | chr4_2:68526571-68526590 | Msa0617840:CDS | 35.0% |
! | ATTTGGGCTAATGAAGCTTT+TGG | + | chr4_2:68526588-68526607 | Msa0617840:CDS | 35.0% |
! | ATGAAGCTTTTGGTCCATTT+TGG | + | chr4_2:68526598-68526617 | Msa0617840:CDS | 35.0% |
! | TGAAGCTTTTGGTCCATTTT+GGG | + | chr4_2:68526599-68526618 | Msa0617840:CDS | 35.0% |
!! | GGCTACTGGAAATATTTTTG+TGG | + | chr4_2:68526633-68526652 | Msa0617840:CDS | 35.0% |
ATAGTTGGTTATACTGCAGT+TGG | + | chr4_2:68526801-68526820 | Msa0617840:CDS | 35.0% | |
CATTAACACAAAGGGCAAAA+GGG | - | chr4_2:68526841-68526860 | None:intergenic | 35.0% | |
ACATTAACACAAAGGGCAAA+AGG | - | chr4_2:68526842-68526861 | None:intergenic | 35.0% | |
CCTAAACTTAACCATCTACT+AGG | - | chr4_2:68526891-68526910 | None:intergenic | 35.0% | |
CCTAGTAGATGGTTAAGTTT+AGG | + | chr4_2:68526888-68526907 | Msa0617840:CDS | 35.0% | |
! | ATGGTTAAGTTTAGGACAAG+AGG | + | chr4_2:68526896-68526915 | Msa0617840:CDS | 35.0% |
! | TGGTTAAGTTTAGGACAAGA+GGG | + | chr4_2:68526897-68526916 | Msa0617840:CDS | 35.0% |
! | AAGAGGGTGTAGAAAAAGAT+TGG | + | chr4_2:68526913-68526932 | Msa0617840:CDS | 35.0% |
! | CCAGCAAATAACAAAGCTTT+TGG | - | chr4_2:68527032-68527051 | None:intergenic | 35.0% |
!! | CCAAAAGCTTTGTTATTTGC+TGG | + | chr4_2:68527029-68527048 | Msa0617840:CDS | 35.0% |
!! | TGCTGGATTGTTAACTTGTT+TGG | + | chr4_2:68527046-68527065 | Msa0617840:CDS | 35.0% |
!! | GCTGGATTGTTAACTTGTTT+GGG | + | chr4_2:68527047-68527066 | Msa0617840:CDS | 35.0% |
CTGGGAATTGGTTGAAATAT+TGG | + | chr4_2:68527165-68527184 | Msa0617840:CDS | 35.0% | |
!!! | GGTGCTGTTTTGTCAATTAT+TGG | + | chr4_2:68527197-68527216 | Msa0617840:CDS | 35.0% |
! | AGTGCTGCATATCAACTTTT+AGG | + | chr4_2:68527242-68527261 | Msa0617840:CDS | 35.0% |
!! | ACTTTTAGGTATGTCTGACT+TGG | + | chr4_2:68527256-68527275 | Msa0617840:CDS | 35.0% |
!! | CTTTTAGGTATGTCTGACTT+GGG | + | chr4_2:68527257-68527276 | Msa0617840:CDS | 35.0% |
GAAATCAAAATTGCCATCGA+AGG | - | chr4_2:68527329-68527348 | None:intergenic | 35.0% | |
! | TTGCTTCTTTCCTTAAGTTG+AGG | + | chr4_2:68527441-68527460 | Msa0617840:CDS | 35.0% |
AATCCAAGTGGAACCTTATA+AGG | - | chr4_2:68527491-68527510 | None:intergenic | 35.0% | |
ACCAAAATTGTATATGTGGC+TGG | + | chr4_2:68527575-68527594 | Msa0617840:CDS | 35.0% | |
! | ACCAGCCACATATACAATTT+TGG | - | chr4_2:68527579-68527598 | None:intergenic | 35.0% |
GGTGCTTTCTTAACATTCTT+AGG | + | chr4_2:68527596-68527615 | Msa0617840:CDS | 35.0% | |
TGAATCTTTGCAAGTCTAAG+AGG | + | chr4_2:68527639-68527658 | Msa0617840:CDS | 35.0% | |
!! | CTCATCTACTTTGAGGTATC+TGG | + | chr4_2:68526414-68526433 | Msa0617840:CDS | 40.0% |
!! | ATCTACTTTGAGGTATCTGG+TGG | + | chr4_2:68526417-68526436 | Msa0617840:CDS | 40.0% |
! | ACTGTTGCTTCTTCACCATA+AGG | - | chr4_2:68526444-68526463 | None:intergenic | 40.0% |
!!! | GGTCCACTTTTTGCAATTCT+TGG | + | chr4_2:68526474-68526493 | Msa0617840:CDS | 40.0% |
TAACAAACCCACCATTTCCA+GGG | - | chr4_2:68526569-68526588 | None:intergenic | 40.0% | |
ATAACAAACCCACCATTTCC+AGG | - | chr4_2:68526570-68526589 | None:intergenic | 40.0% | |
! | GAAGCTTTTGGTCCATTTTG+GGG | + | chr4_2:68526600-68526619 | Msa0617840:CDS | 40.0% |
! | AAGCTTTTGGTCCATTTTGG+GGG | + | chr4_2:68526601-68526620 | Msa0617840:CDS | 40.0% |
! | GTGATTCCTGTTTTGTCTTC+AGG | + | chr4_2:68526708-68526727 | Msa0617840:CDS | 40.0% |
GGTAAACCTGAAGACAAAAC+AGG | - | chr4_2:68526717-68526736 | None:intergenic | 40.0% | |
ACAAAAACTGACACTGTACG+AGG | - | chr4_2:68526738-68526757 | None:intergenic | 40.0% | |
! | GGTTATACTGCAGTTGGTTT+AGG | + | chr4_2:68526807-68526826 | Msa0617840:CDS | 40.0% |
! | ATTCCTTTGTTGGCTACTAC+TGG | + | chr4_2:68527077-68527096 | Msa0617840:CDS | 40.0% |
! | TGCCACTTGATCAAGAAGTT+TGG | + | chr4_2:68527105-68527124 | Msa0617840:CDS | 40.0% |
GCCACTTGATCAAGAAGTTT+GGG | + | chr4_2:68527106-68527125 | Msa0617840:CDS | 40.0% | |
ACCCAAACTTCTTGATCAAG+TGG | - | chr4_2:68527110-68527129 | None:intergenic | 40.0% | |
CTTGATCAAGAAGTTTGGGT+TGG | + | chr4_2:68527110-68527129 | Msa0617840:CDS | 40.0% | |
!! | ATCAAGAAGTTTGGGTTGGT+GGG | + | chr4_2:68527114-68527133 | Msa0617840:CDS | 40.0% |
AGACCTTATAAGGTTCCACT+TGG | + | chr4_2:68527485-68527504 | Msa0617840:CDS | 40.0% | |
AAGGTTCCACTTGGATTCTT+TGG | + | chr4_2:68527494-68527513 | Msa0617840:CDS | 40.0% | |
! | TTTTGTTCCATCTGTGCTGT+TGG | + | chr4_2:68527532-68527551 | Msa0617840:CDS | 40.0% |
ACATAAACCAACAGCACAGA+TGG | - | chr4_2:68527542-68527561 | None:intergenic | 40.0% | |
ATCTTTGCAAGTCTAAGAGG+TGG | + | chr4_2:68527642-68527661 | Msa0617840:CDS | 40.0% | |
CCAATTTATCTCCTACTCCA+CGG | - | chr4_2:68527676-68527695 | None:intergenic | 40.0% | |
!! | CTCATCTACTTTGAGGTATC+TGG | + | chr4_2:68526414-68526433 | Msa0617840:CDS | 40.0% |
!! | ATCTACTTTGAGGTATCTGG+TGG | + | chr4_2:68526417-68526436 | Msa0617840:CDS | 40.0% |
! | ACTGTTGCTTCTTCACCATA+AGG | - | chr4_2:68526444-68526463 | None:intergenic | 40.0% |
!!! | GGTCCACTTTTTGCAATTCT+TGG | + | chr4_2:68526474-68526493 | Msa0617840:CDS | 40.0% |
TAACAAACCCACCATTTCCA+GGG | - | chr4_2:68526569-68526588 | None:intergenic | 40.0% | |
ATAACAAACCCACCATTTCC+AGG | - | chr4_2:68526570-68526589 | None:intergenic | 40.0% | |
! | GAAGCTTTTGGTCCATTTTG+GGG | + | chr4_2:68526600-68526619 | Msa0617840:CDS | 40.0% |
! | AAGCTTTTGGTCCATTTTGG+GGG | + | chr4_2:68526601-68526620 | Msa0617840:CDS | 40.0% |
! | GTGATTCCTGTTTTGTCTTC+AGG | + | chr4_2:68526708-68526727 | Msa0617840:CDS | 40.0% |
GGTAAACCTGAAGACAAAAC+AGG | - | chr4_2:68526717-68526736 | None:intergenic | 40.0% | |
ACAAAAACTGACACTGTACG+AGG | - | chr4_2:68526738-68526757 | None:intergenic | 40.0% | |
! | GGTTATACTGCAGTTGGTTT+AGG | + | chr4_2:68526807-68526826 | Msa0617840:CDS | 40.0% |
! | ATTCCTTTGTTGGCTACTAC+TGG | + | chr4_2:68527077-68527096 | Msa0617840:CDS | 40.0% |
! | TGCCACTTGATCAAGAAGTT+TGG | + | chr4_2:68527105-68527124 | Msa0617840:CDS | 40.0% |
GCCACTTGATCAAGAAGTTT+GGG | + | chr4_2:68527106-68527125 | Msa0617840:CDS | 40.0% | |
ACCCAAACTTCTTGATCAAG+TGG | - | chr4_2:68527110-68527129 | None:intergenic | 40.0% | |
CTTGATCAAGAAGTTTGGGT+TGG | + | chr4_2:68527110-68527129 | Msa0617840:CDS | 40.0% | |
!! | ATCAAGAAGTTTGGGTTGGT+GGG | + | chr4_2:68527114-68527133 | Msa0617840:CDS | 40.0% |
AGACCTTATAAGGTTCCACT+TGG | + | chr4_2:68527485-68527504 | Msa0617840:CDS | 40.0% | |
AAGGTTCCACTTGGATTCTT+TGG | + | chr4_2:68527494-68527513 | Msa0617840:CDS | 40.0% | |
! | TTTTGTTCCATCTGTGCTGT+TGG | + | chr4_2:68527532-68527551 | Msa0617840:CDS | 40.0% |
ACATAAACCAACAGCACAGA+TGG | - | chr4_2:68527542-68527561 | None:intergenic | 40.0% | |
ATCTTTGCAAGTCTAAGAGG+TGG | + | chr4_2:68527642-68527661 | Msa0617840:CDS | 40.0% | |
CCAATTTATCTCCTACTCCA+CGG | - | chr4_2:68527676-68527695 | None:intergenic | 40.0% | |
CTGCAGTTAACAGAGCTTCT+GGG | - | chr4_2:68526530-68526549 | None:intergenic | 45.0% | |
TCTGCAGTTAACAGAGCTTC+TGG | - | chr4_2:68526531-68526550 | None:intergenic | 45.0% | |
GAATTAGCTACAGCATTCCC+TGG | + | chr4_2:68526549-68526568 | Msa0617840:CDS | 45.0% | |
!! | TCCATTTTGGGGGTCTCTTA+TGG | + | chr4_2:68526611-68526630 | Msa0617840:CDS | 45.0% |
!! | CCATTTTGGGGGTCTCTTAT+GGG | + | chr4_2:68526612-68526631 | Msa0617840:CDS | 45.0% |
GATAGTGCTAGCACTTTAGC+TGG | + | chr4_2:68526978-68526997 | Msa0617840:CDS | 45.0% | |
!! | GATCAAGAAGTTTGGGTTGG+TGG | + | chr4_2:68527113-68527132 | Msa0617840:CDS | 45.0% |
!! | TGGTGGGTATTTTGCACATG+TGG | + | chr4_2:68527130-68527149 | Msa0617840:CDS | 45.0% |
!! | ATGTGGCTGGTTTGATTGCT+GGG | + | chr4_2:68527147-68527166 | Msa0617840:CDS | 45.0% |
! | CTGGTTTGATTGCTGGGAAT+TGG | + | chr4_2:68527153-68527172 | Msa0617840:CDS | 45.0% |
GTGGTTTAACACACCTTCGA+TGG | + | chr4_2:68527313-68527332 | Msa0617840:CDS | 45.0% | |
CCGTGGAGTAGGAGATAAAT+TGG | + | chr4_2:68527673-68527692 | Msa0617840:CDS | 45.0% | |
CTGCAGTTAACAGAGCTTCT+GGG | - | chr4_2:68526530-68526549 | None:intergenic | 45.0% | |
TCTGCAGTTAACAGAGCTTC+TGG | - | chr4_2:68526531-68526550 | None:intergenic | 45.0% | |
GAATTAGCTACAGCATTCCC+TGG | + | chr4_2:68526549-68526568 | Msa0617840:CDS | 45.0% | |
!! | TCCATTTTGGGGGTCTCTTA+TGG | + | chr4_2:68526611-68526630 | Msa0617840:CDS | 45.0% |
!! | CCATTTTGGGGGTCTCTTAT+GGG | + | chr4_2:68526612-68526631 | Msa0617840:CDS | 45.0% |
GATAGTGCTAGCACTTTAGC+TGG | + | chr4_2:68526978-68526997 | Msa0617840:CDS | 45.0% | |
!! | GATCAAGAAGTTTGGGTTGG+TGG | + | chr4_2:68527113-68527132 | Msa0617840:CDS | 45.0% |
!! | TGGTGGGTATTTTGCACATG+TGG | + | chr4_2:68527130-68527149 | Msa0617840:CDS | 45.0% |
!! | ATGTGGCTGGTTTGATTGCT+GGG | + | chr4_2:68527147-68527166 | Msa0617840:CDS | 45.0% |
! | CTGGTTTGATTGCTGGGAAT+TGG | + | chr4_2:68527153-68527172 | Msa0617840:CDS | 45.0% |
GTGGTTTAACACACCTTCGA+TGG | + | chr4_2:68527313-68527332 | Msa0617840:CDS | 45.0% | |
CCGTGGAGTAGGAGATAAAT+TGG | + | chr4_2:68527673-68527692 | Msa0617840:CDS | 45.0% | |
! | GAGGTATCTGGTGGACCTTA+TGG | + | chr4_2:68526426-68526445 | Msa0617840:CDS | 50.0% |
! | GAAGCAACAGTAAGTGCTGC+AGG | + | chr4_2:68526453-68526472 | Msa0617840:CDS | 50.0% |
GCTACAGCATTCCCTGGAAA+TGG | + | chr4_2:68526555-68526574 | Msa0617840:CDS | 50.0% | |
ACAGCATTCCCTGGAAATGG+TGG | + | chr4_2:68526558-68526577 | Msa0617840:CDS | 50.0% | |
CAGCATTCCCTGGAAATGGT+GGG | + | chr4_2:68526559-68526578 | Msa0617840:CDS | 50.0% | |
CCCATAAGAGACCCCCAAAA+TGG | - | chr4_2:68526615-68526634 | None:intergenic | 50.0% | |
GCACCAGTAGTAGCCAACAA+AGG | - | chr4_2:68527083-68527102 | None:intergenic | 50.0% | |
! | GGGTATTTTGCACATGTGGC+TGG | + | chr4_2:68527134-68527153 | Msa0617840:CDS | 50.0% |
!! | CATGTGGCTGGTTTGATTGC+TGG | + | chr4_2:68527146-68527165 | Msa0617840:CDS | 50.0% |
!! | AAGAGGTGGATTGAGTTCCG+TGG | + | chr4_2:68527656-68527675 | Msa0617840:CDS | 50.0% |
TGGATTGAGTTCCGTGGAGT+AGG | + | chr4_2:68527662-68527681 | Msa0617840:CDS | 50.0% | |
! | GAGGTATCTGGTGGACCTTA+TGG | + | chr4_2:68526426-68526445 | Msa0617840:CDS | 50.0% |
! | GAAGCAACAGTAAGTGCTGC+AGG | + | chr4_2:68526453-68526472 | Msa0617840:CDS | 50.0% |
GCTACAGCATTCCCTGGAAA+TGG | + | chr4_2:68526555-68526574 | Msa0617840:CDS | 50.0% | |
ACAGCATTCCCTGGAAATGG+TGG | + | chr4_2:68526558-68526577 | Msa0617840:CDS | 50.0% | |
CAGCATTCCCTGGAAATGGT+GGG | + | chr4_2:68526559-68526578 | Msa0617840:CDS | 50.0% | |
CCCATAAGAGACCCCCAAAA+TGG | - | chr4_2:68526615-68526634 | None:intergenic | 50.0% | |
GCACCAGTAGTAGCCAACAA+AGG | - | chr4_2:68527083-68527102 | None:intergenic | 50.0% | |
! | GGGTATTTTGCACATGTGGC+TGG | + | chr4_2:68527134-68527153 | Msa0617840:CDS | 50.0% |
!! | CATGTGGCTGGTTTGATTGC+TGG | + | chr4_2:68527146-68527165 | Msa0617840:CDS | 50.0% |
!! | AAGAGGTGGATTGAGTTCCG+TGG | + | chr4_2:68527656-68527675 | Msa0617840:CDS | 50.0% |
TGGATTGAGTTCCGTGGAGT+AGG | + | chr4_2:68527662-68527681 | Msa0617840:CDS | 50.0% | |
! | GGGGGTCTCTTATGGGCTAC+TGG | + | chr4_2:68526619-68526638 | Msa0617840:CDS | 60.0% |
! | GGGGGTCTCTTATGGGCTAC+TGG | + | chr4_2:68526619-68526638 | Msa0617840:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 68526273 | 68527721 | 68526273 | ID=Msa0617840;Name=Msa0617840 |
chr4_2 | mRNA | 68526273 | 68527721 | 68526273 | ID=Msa0617840-mRNA-1;Parent=Msa0617840;Name=Msa0617840-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|482 |
chr4_2 | exon | 68526273 | 68527721 | 68526273 | ID=Msa0617840-mRNA-1:exon:19671;Parent=Msa0617840-mRNA-1 |
chr4_2 | CDS | 68526273 | 68527721 | 68526273 | ID=Msa0617840-mRNA-1:cds;Parent=Msa0617840-mRNA-1 |
Gene Sequence |
Protein sequence |