AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617840 MtrunA17_Chr8g0378551 96.868 479 15 0 1 479 1 479 0.0 931
Msa0617840 MtrunA17_Chr5g0426641 63.087 447 163 1 35 481 20 464 0.0 577
Msa0617840 MtrunA17_Chr1g0211371 48.444 450 229 2 26 475 12 458 8.35e-152 440
Msa0617840 MtrunA17_Chr3g0094551 47.846 441 227 2 38 478 17 454 8.01e-149 433
Msa0617840 MtrunA17_Chr5g0409251 47.273 440 230 2 28 467 18 455 4.05e-147 429
Msa0617840 MtrunA17_Chr5g0393681 48.292 439 221 5 33 469 3 437 4.11e-133 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617840 AT3G13620.1 60.600 467 181 2 13 479 4 467 0.0 571
Msa0617840 AT1G31830.1 48.132 455 232 3 26 479 34 485 4.77e-156 452
Msa0617840 AT1G31830.2 48.132 455 232 3 26 479 18 469 6.25e-156 452
Msa0617840 AT5G05630.1 47.222 468 240 4 6 467 13 479 6.39e-152 442
Msa0617840 AT1G31820.1 48.478 460 227 3 29 481 25 481 9.11e-152 441
Msa0617840 AT3G19553.1 50.972 463 214 5 27 479 9 468 1.14e-147 431

Find 80 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGGTGGGTTTGTTATT+TGG 0.119761 4_2:+68526571 Msa0617840:CDS
CTCATCTACTTTGAGGTATC+TGG 0.167645 4_2:+68526414 Msa0617840:CDS
GGTGCTTTCTTAACATTCTT+AGG 0.174504 4_2:+68527596 Msa0617840:CDS
TTGAATCTTCTTCTTCTCTT+TGG 0.199488 4_2:-68526341 None:intergenic
CTGGGAATTGGTTGAAATAT+TGG 0.212399 4_2:+68527165 Msa0617840:CDS
TCTGGGATACTCCAAATAAA+TGG 0.218421 4_2:-68526510 None:intergenic
AAGGTTCCACTTGGATTCTT+TGG 0.223454 4_2:+68527494 Msa0617840:CDS
TGCTGGATTGTTAACTTGTT+TGG 0.231778 4_2:+68527046 Msa0617840:CDS
ACCAGCCACATATACAATTT+TGG 0.241109 4_2:-68527576 None:intergenic
TCTGCAGTTAACAGAGCTTC+TGG 0.247712 4_2:-68526528 None:intergenic
AAATGGTGGGTTTGTTATTT+GGG 0.257640 4_2:+68526572 Msa0617840:CDS
CCAGCAAATAACAAAGCTTT+TGG 0.261342 4_2:-68527029 None:intergenic
TTGAAATATTGGATGGAAAT+TGG 0.269249 4_2:+68527176 Msa0617840:CDS
GGTTATACTGCAGTTGGTTT+AGG 0.285281 4_2:+68526807 Msa0617840:CDS
CCAAAAGCTTTGTTATTTGC+TGG 0.287356 4_2:+68527029 Msa0617840:CDS
ATTTGGGCTAATGAAGCTTT+TGG 0.289227 4_2:+68526588 Msa0617840:CDS
TACAATGAAAAGACCTTATA+AGG 0.296408 4_2:+68527475 Msa0617840:CDS
AATCCAAGTGGAACCTTATA+AGG 0.306194 4_2:-68527488 None:intergenic
TGCCACTTGATCAAGAAGTT+TGG 0.318408 4_2:+68527105 Msa0617840:CDS
CTGGTTTGATTGCTGGGAAT+TGG 0.320667 4_2:+68527153 Msa0617840:CDS
GGGTTATATAATTCCTTTGT+TGG 0.320719 4_2:+68527067 Msa0617840:CDS
AGATAATCTATACATAGAAT+TGG 0.327586 4_2:-68526678 None:intergenic
GTATAGTTTAGGTATGCTTT+TGG 0.330507 4_2:+68527415 Msa0617840:CDS
CCTAGTAGATGGTTAAGTTT+AGG 0.331119 4_2:+68526888 Msa0617840:CDS
GCCACTTGATCAAGAAGTTT+GGG 0.332993 4_2:+68527106 Msa0617840:CDS
CATGTGGCTGGTTTGATTGC+TGG 0.333123 4_2:+68527146 Msa0617840:CDS
CCGTGGAGTAGGAGATAAAT+TGG 0.335154 4_2:+68527673 Msa0617840:CDS
GCTGGATTGTTAACTTGTTT+GGG 0.336043 4_2:+68527047 Msa0617840:CDS
AATCTTTCTCATCTACTTTG+AGG 0.359694 4_2:+68526407 Msa0617840:CDS
GAGGTATCTGGTGGACCTTA+TGG 0.387052 4_2:+68526426 Msa0617840:CDS
ATTCCTTTGTTGGCTACTAC+TGG 0.396954 4_2:+68527077 Msa0617840:CDS
ATAACAAACCCACCATTTCC+AGG 0.406978 4_2:-68526567 None:intergenic
GTGCTTTCTTAACATTCTTA+GGG 0.407305 4_2:+68527597 Msa0617840:CDS
ATGTGGCTGGTTTGATTGCT+GGG 0.424967 4_2:+68527147 Msa0617840:CDS
TATTCTGGTTTAGCTATAGT+TGG 0.426561 4_2:+68526786 Msa0617840:CDS
ACATTAACACAAAGGGCAAA+AGG 0.443673 4_2:-68526839 None:intergenic
ACTGTTGCTTCTTCACCATA+AGG 0.446104 4_2:-68526441 None:intergenic
CTGGGATACTCCAAATAAAT+GGG 0.448636 4_2:-68526509 None:intergenic
CTGCAGTTAACAGAGCTTCT+GGG 0.454168 4_2:-68526527 None:intergenic
AAGTAGATGAGAAAGATTAG+AGG 0.454596 4_2:-68526402 None:intergenic
CTAAAATTGATCCTAGTAGA+TGG 0.462759 4_2:+68526877 Msa0617840:CDS
GCTACAGCATTCCCTGGAAA+TGG 0.470404 4_2:+68526555 Msa0617840:CDS
GATAATCTATACATAGAATT+GGG 0.472908 4_2:-68526677 None:intergenic
ATCAAAGACATTAACACAAA+GGG 0.476966 4_2:-68526846 None:intergenic
CCTAAACTTAACCATCTACT+AGG 0.478755 4_2:-68526888 None:intergenic
ATGGTTAAGTTTAGGACAAG+AGG 0.482198 4_2:+68526896 Msa0617840:CDS
TGAATCTTTGCAAGTCTAAG+AGG 0.493630 4_2:+68527639 Msa0617840:CDS
ATCAAGAAGTTTGGGTTGGT+GGG 0.495054 4_2:+68527114 Msa0617840:CDS
GATCAAGAAGTTTGGGTTGG+TGG 0.497496 4_2:+68527113 Msa0617840:CDS
GGTAAACCTGAAGACAAAAC+AGG 0.502863 4_2:-68526714 None:intergenic
CATTAACACAAAGGGCAAAA+GGG 0.503892 4_2:-68526838 None:intergenic
GATAGTGCTAGCACTTTAGC+TGG 0.508343 4_2:+68526978 Msa0617840:CDS
ATAGTTGGTTATACTGCAGT+TGG 0.509080 4_2:+68526801 Msa0617840:CDS
GAAGCAACAGTAAGTGCTGC+AGG 0.513783 4_2:+68526453 Msa0617840:CDS
AGTAGATGAGAAAGATTAGA+GGG 0.514522 4_2:-68526401 None:intergenic
TGGTTAAGTTTAGGACAAGA+GGG 0.515356 4_2:+68526897 Msa0617840:CDS
AGACCTTATAAGGTTCCACT+TGG 0.526727 4_2:+68527485 Msa0617840:CDS
ACCAAAATTGTATATGTGGC+TGG 0.533724 4_2:+68527575 Msa0617840:CDS
TGCTACCAAAATTGTATATG+TGG 0.535048 4_2:+68527571 Msa0617840:CDS
TGGATTGAGTTCCGTGGAGT+AGG 0.537751 4_2:+68527662 Msa0617840:CDS
ACATAAACCAACAGCACAGA+TGG 0.538480 4_2:-68527539 None:intergenic
GTGGTTTAACACACCTTCGA+TGG 0.538701 4_2:+68527313 Msa0617840:CDS
CTTGATCAAGAAGTTTGGGT+TGG 0.540498 4_2:+68527110 Msa0617840:CDS
TTGCTTCTTTCCTTAAGTTG+AGG 0.541531 4_2:+68527441 Msa0617840:CDS
ATCTACTTTGAGGTATCTGG+TGG 0.545094 4_2:+68526417 Msa0617840:CDS
ACCCAAACTTCTTGATCAAG+TGG 0.548962 4_2:-68527107 None:intergenic
ACAGCATTCCCTGGAAATGG+TGG 0.558001 4_2:+68526558 Msa0617840:CDS
ATTTCAACAATAATATCACT+TGG 0.558408 4_2:+68527344 Msa0617840:CDS
GAATTAGCTACAGCATTCCC+TGG 0.558740 4_2:+68526549 Msa0617840:CDS
TAACAAACCCACCATTTCCA+GGG 0.582040 4_2:-68526566 None:intergenic
ATCTTTGCAAGTCTAAGAGG+TGG 0.589872 4_2:+68527642 Msa0617840:CDS
CAGCATTCCCTGGAAATGGT+GGG 0.590354 4_2:+68526559 Msa0617840:CDS
GAATTGGTTGAAATATTGGA+TGG 0.593097 4_2:+68527169 Msa0617840:CDS
GAAATCAAAATTGCCATCGA+AGG 0.614144 4_2:-68527326 None:intergenic
ATTAAACCAAAGAATCCAAG+TGG 0.618042 4_2:-68527500 None:intergenic
AATCAAAGACATTAACACAA+AGG 0.619734 4_2:-68526847 None:intergenic
CCAATTTATCTCCTACTCCA+CGG 0.637188 4_2:-68527673 None:intergenic
AAGAGGTGGATTGAGTTCCG+TGG 0.659452 4_2:+68527656 Msa0617840:CDS
GCACCAGTAGTAGCCAACAA+AGG 0.678385 4_2:-68527080 None:intergenic
TATTTGGTGAAAGATCAAAG+TGG 0.716626 4_2:+68527294 Msa0617840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAATACTATTTTT+TGG + chr4_2:68526940-68526959 Msa0617840:CDS 10.0%
!!! TTTTTTTCAATACTATTTTT+TGG + chr4_2:68526940-68526959 Msa0617840:CDS 10.0%
!!! TTATAATTTTCCCATTTATT+TGG + chr4_2:68526499-68526518 Msa0617840:CDS 15.0%
!!! GTTAATTTTTTGTATAGTTT+AGG + chr4_2:68527404-68527423 Msa0617840:CDS 15.0%
!!! TTATAATTTTCCCATTTATT+TGG + chr4_2:68526499-68526518 Msa0617840:CDS 15.0%
!!! GTTAATTTTTTGTATAGTTT+AGG + chr4_2:68527404-68527423 Msa0617840:CDS 15.0%
!!! TTTTTTTGTGATTTGGTTTT+GGG - chr4_2:68526369-68526388 None:intergenic 20.0%
!! GATAATCTATACATAGAATT+GGG - chr4_2:68526680-68526699 None:intergenic 20.0%
!! AGATAATCTATACATAGAAT+TGG - chr4_2:68526681-68526700 None:intergenic 20.0%
!!! TTGTCTTTTTTGAATTATTC+TGG + chr4_2:68526771-68526790 Msa0617840:CDS 20.0%
!!! TTTTTTGGAACTTGAATTTT+TGG + chr4_2:68526955-68526974 Msa0617840:CDS 20.0%
!!! TTTTTGGAACTTGAATTTTT+GGG + chr4_2:68526956-68526975 Msa0617840:CDS 20.0%
!! ATTTCAACAATAATATCACT+TGG + chr4_2:68527344-68527363 Msa0617840:CDS 20.0%
!!! TTTTTTTGTGATTTGGTTTT+GGG - chr4_2:68526369-68526388 None:intergenic 20.0%
!! GATAATCTATACATAGAATT+GGG - chr4_2:68526680-68526699 None:intergenic 20.0%
!! AGATAATCTATACATAGAAT+TGG - chr4_2:68526681-68526700 None:intergenic 20.0%
!!! TTGTCTTTTTTGAATTATTC+TGG + chr4_2:68526771-68526790 Msa0617840:CDS 20.0%
!!! TTTTTTGGAACTTGAATTTT+TGG + chr4_2:68526955-68526974 Msa0617840:CDS 20.0%
!!! TTTTTGGAACTTGAATTTTT+GGG + chr4_2:68526956-68526975 Msa0617840:CDS 20.0%
!! ATTTCAACAATAATATCACT+TGG + chr4_2:68527344-68527363 Msa0617840:CDS 20.0%
!!! TTTTTTGTGATTTGGTTTTG+GGG - chr4_2:68526368-68526387 None:intergenic 25.0%
!!! CTTTTTTTGTGATTTGGTTT+TGG - chr4_2:68526370-68526389 None:intergenic 25.0%
! ATCAAAGACATTAACACAAA+GGG - chr4_2:68526849-68526868 None:intergenic 25.0%
! AATCAAAGACATTAACACAA+AGG - chr4_2:68526850-68526869 None:intergenic 25.0%
! TTGAAATATTGGATGGAAAT+TGG + chr4_2:68527176-68527195 Msa0617840:CDS 25.0%
! GGATTCATACCAAAAATATT+TGG + chr4_2:68527278-68527297 Msa0617840:CDS 25.0%
!! GATCTTTCACCAAATATTTT+TGG - chr4_2:68527290-68527309 None:intergenic 25.0%
!! TATAAGGTCTTTTCATTGTA+GGG - chr4_2:68527475-68527494 None:intergenic 25.0%
!! TTATAAGGTCTTTTCATTGT+AGG - chr4_2:68527476-68527495 None:intergenic 25.0%
! TACAATGAAAAGACCTTATA+AGG + chr4_2:68527475-68527494 Msa0617840:CDS 25.0%
!!! TTTTTTGTGATTTGGTTTTG+GGG - chr4_2:68526368-68526387 None:intergenic 25.0%
!!! CTTTTTTTGTGATTTGGTTT+TGG - chr4_2:68526370-68526389 None:intergenic 25.0%
! ATCAAAGACATTAACACAAA+GGG - chr4_2:68526849-68526868 None:intergenic 25.0%
! AATCAAAGACATTAACACAA+AGG - chr4_2:68526850-68526869 None:intergenic 25.0%
! TTGAAATATTGGATGGAAAT+TGG + chr4_2:68527176-68527195 Msa0617840:CDS 25.0%
! GGATTCATACCAAAAATATT+TGG + chr4_2:68527278-68527297 Msa0617840:CDS 25.0%
!! GATCTTTCACCAAATATTTT+TGG - chr4_2:68527290-68527309 None:intergenic 25.0%
!! TATAAGGTCTTTTCATTGTA+GGG - chr4_2:68527475-68527494 None:intergenic 25.0%
!! TTATAAGGTCTTTTCATTGT+AGG - chr4_2:68527476-68527495 None:intergenic 25.0%
! TACAATGAAAAGACCTTATA+AGG + chr4_2:68527475-68527494 Msa0617840:CDS 25.0%
TTGAATCTTCTTCTTCTCTT+TGG - chr4_2:68526344-68526363 None:intergenic 30.0%
!!! TGCTAGCTTTTTTTGTGATT+TGG - chr4_2:68526376-68526395 None:intergenic 30.0%
AGTAGATGAGAAAGATTAGA+GGG - chr4_2:68526404-68526423 None:intergenic 30.0%
AAGTAGATGAGAAAGATTAG+AGG - chr4_2:68526405-68526424 None:intergenic 30.0%
AATCTTTCTCATCTACTTTG+AGG + chr4_2:68526407-68526426 Msa0617840:CDS 30.0%
AATCCAAGAATTGCAAAAAG+TGG - chr4_2:68526480-68526499 None:intergenic 30.0%
!! AAATGGTGGGTTTGTTATTT+GGG + chr4_2:68526572-68526591 Msa0617840:CDS 30.0%
!! TATTCTGGTTTAGCTATAGT+TGG + chr4_2:68526786-68526805 Msa0617840:CDS 30.0%
! CATCTACTAGGATCAATTTT+AGG - chr4_2:68526879-68526898 None:intergenic 30.0%
CTAAAATTGATCCTAGTAGA+TGG + chr4_2:68526877-68526896 Msa0617840:CDS 30.0%
!! GCTTTTGGAAAAGTTTTATG+TGG - chr4_2:68527017-68527036 None:intergenic 30.0%
GGGTTATATAATTCCTTTGT+TGG + chr4_2:68527067-68527086 Msa0617840:CDS 30.0%
GAATTGGTTGAAATATTGGA+TGG + chr4_2:68527169-68527188 Msa0617840:CDS 30.0%
! TATTTGGTGAAAGATCAAAG+TGG + chr4_2:68527294-68527313 Msa0617840:CDS 30.0%
! GTATAGTTTAGGTATGCTTT+TGG + chr4_2:68527415-68527434 Msa0617840:CDS 30.0%
!!! GGAATTTTTTCCTCAACTTA+AGG - chr4_2:68527454-68527473 None:intergenic 30.0%
ATTAAACCAAAGAATCCAAG+TGG - chr4_2:68527503-68527522 None:intergenic 30.0%
TGCTACCAAAATTGTATATG+TGG + chr4_2:68527571-68527590 Msa0617840:CDS 30.0%
GTGCTTTCTTAACATTCTTA+GGG + chr4_2:68527597-68527616 Msa0617840:CDS 30.0%
TTGAATCTTCTTCTTCTCTT+TGG - chr4_2:68526344-68526363 None:intergenic 30.0%
!!! TGCTAGCTTTTTTTGTGATT+TGG - chr4_2:68526376-68526395 None:intergenic 30.0%
AGTAGATGAGAAAGATTAGA+GGG - chr4_2:68526404-68526423 None:intergenic 30.0%
AAGTAGATGAGAAAGATTAG+AGG - chr4_2:68526405-68526424 None:intergenic 30.0%
AATCTTTCTCATCTACTTTG+AGG + chr4_2:68526407-68526426 Msa0617840:CDS 30.0%
AATCCAAGAATTGCAAAAAG+TGG - chr4_2:68526480-68526499 None:intergenic 30.0%
!! AAATGGTGGGTTTGTTATTT+GGG + chr4_2:68526572-68526591 Msa0617840:CDS 30.0%
!! TATTCTGGTTTAGCTATAGT+TGG + chr4_2:68526786-68526805 Msa0617840:CDS 30.0%
! CATCTACTAGGATCAATTTT+AGG - chr4_2:68526879-68526898 None:intergenic 30.0%
CTAAAATTGATCCTAGTAGA+TGG + chr4_2:68526877-68526896 Msa0617840:CDS 30.0%
!! GCTTTTGGAAAAGTTTTATG+TGG - chr4_2:68527017-68527036 None:intergenic 30.0%
GGGTTATATAATTCCTTTGT+TGG + chr4_2:68527067-68527086 Msa0617840:CDS 30.0%
GAATTGGTTGAAATATTGGA+TGG + chr4_2:68527169-68527188 Msa0617840:CDS 30.0%
! TATTTGGTGAAAGATCAAAG+TGG + chr4_2:68527294-68527313 Msa0617840:CDS 30.0%
! GTATAGTTTAGGTATGCTTT+TGG + chr4_2:68527415-68527434 Msa0617840:CDS 30.0%
!!! GGAATTTTTTCCTCAACTTA+AGG - chr4_2:68527454-68527473 None:intergenic 30.0%
ATTAAACCAAAGAATCCAAG+TGG - chr4_2:68527503-68527522 None:intergenic 30.0%
TGCTACCAAAATTGTATATG+TGG + chr4_2:68527571-68527590 Msa0617840:CDS 30.0%
GTGCTTTCTTAACATTCTTA+GGG + chr4_2:68527597-68527616 Msa0617840:CDS 30.0%
! GTTTTGTGTTGAAGAGTGAA+GGG - chr4_2:68526298-68526317 None:intergenic 35.0%
!! AGTTTTGTGTTGAAGAGTGA+AGG - chr4_2:68526299-68526318 None:intergenic 35.0%
CTGGGATACTCCAAATAAAT+GGG - chr4_2:68526512-68526531 None:intergenic 35.0%
! TCTGGGATACTCCAAATAAA+TGG - chr4_2:68526513-68526532 None:intergenic 35.0%
!! GAAATGGTGGGTTTGTTATT+TGG + chr4_2:68526571-68526590 Msa0617840:CDS 35.0%
! ATTTGGGCTAATGAAGCTTT+TGG + chr4_2:68526588-68526607 Msa0617840:CDS 35.0%
! ATGAAGCTTTTGGTCCATTT+TGG + chr4_2:68526598-68526617 Msa0617840:CDS 35.0%
! TGAAGCTTTTGGTCCATTTT+GGG + chr4_2:68526599-68526618 Msa0617840:CDS 35.0%
!! GGCTACTGGAAATATTTTTG+TGG + chr4_2:68526633-68526652 Msa0617840:CDS 35.0%
ATAGTTGGTTATACTGCAGT+TGG + chr4_2:68526801-68526820 Msa0617840:CDS 35.0%
CATTAACACAAAGGGCAAAA+GGG - chr4_2:68526841-68526860 None:intergenic 35.0%
ACATTAACACAAAGGGCAAA+AGG - chr4_2:68526842-68526861 None:intergenic 35.0%
CCTAAACTTAACCATCTACT+AGG - chr4_2:68526891-68526910 None:intergenic 35.0%
CCTAGTAGATGGTTAAGTTT+AGG + chr4_2:68526888-68526907 Msa0617840:CDS 35.0%
! ATGGTTAAGTTTAGGACAAG+AGG + chr4_2:68526896-68526915 Msa0617840:CDS 35.0%
! TGGTTAAGTTTAGGACAAGA+GGG + chr4_2:68526897-68526916 Msa0617840:CDS 35.0%
! AAGAGGGTGTAGAAAAAGAT+TGG + chr4_2:68526913-68526932 Msa0617840:CDS 35.0%
! CCAGCAAATAACAAAGCTTT+TGG - chr4_2:68527032-68527051 None:intergenic 35.0%
!! CCAAAAGCTTTGTTATTTGC+TGG + chr4_2:68527029-68527048 Msa0617840:CDS 35.0%
!! TGCTGGATTGTTAACTTGTT+TGG + chr4_2:68527046-68527065 Msa0617840:CDS 35.0%
!! GCTGGATTGTTAACTTGTTT+GGG + chr4_2:68527047-68527066 Msa0617840:CDS 35.0%
CTGGGAATTGGTTGAAATAT+TGG + chr4_2:68527165-68527184 Msa0617840:CDS 35.0%
!!! GGTGCTGTTTTGTCAATTAT+TGG + chr4_2:68527197-68527216 Msa0617840:CDS 35.0%
! AGTGCTGCATATCAACTTTT+AGG + chr4_2:68527242-68527261 Msa0617840:CDS 35.0%
!! ACTTTTAGGTATGTCTGACT+TGG + chr4_2:68527256-68527275 Msa0617840:CDS 35.0%
!! CTTTTAGGTATGTCTGACTT+GGG + chr4_2:68527257-68527276 Msa0617840:CDS 35.0%
GAAATCAAAATTGCCATCGA+AGG - chr4_2:68527329-68527348 None:intergenic 35.0%
! TTGCTTCTTTCCTTAAGTTG+AGG + chr4_2:68527441-68527460 Msa0617840:CDS 35.0%
AATCCAAGTGGAACCTTATA+AGG - chr4_2:68527491-68527510 None:intergenic 35.0%
ACCAAAATTGTATATGTGGC+TGG + chr4_2:68527575-68527594 Msa0617840:CDS 35.0%
! ACCAGCCACATATACAATTT+TGG - chr4_2:68527579-68527598 None:intergenic 35.0%
GGTGCTTTCTTAACATTCTT+AGG + chr4_2:68527596-68527615 Msa0617840:CDS 35.0%
TGAATCTTTGCAAGTCTAAG+AGG + chr4_2:68527639-68527658 Msa0617840:CDS 35.0%
! GTTTTGTGTTGAAGAGTGAA+GGG - chr4_2:68526298-68526317 None:intergenic 35.0%
!! AGTTTTGTGTTGAAGAGTGA+AGG - chr4_2:68526299-68526318 None:intergenic 35.0%
CTGGGATACTCCAAATAAAT+GGG - chr4_2:68526512-68526531 None:intergenic 35.0%
! TCTGGGATACTCCAAATAAA+TGG - chr4_2:68526513-68526532 None:intergenic 35.0%
!! GAAATGGTGGGTTTGTTATT+TGG + chr4_2:68526571-68526590 Msa0617840:CDS 35.0%
! ATTTGGGCTAATGAAGCTTT+TGG + chr4_2:68526588-68526607 Msa0617840:CDS 35.0%
! ATGAAGCTTTTGGTCCATTT+TGG + chr4_2:68526598-68526617 Msa0617840:CDS 35.0%
! TGAAGCTTTTGGTCCATTTT+GGG + chr4_2:68526599-68526618 Msa0617840:CDS 35.0%
!! GGCTACTGGAAATATTTTTG+TGG + chr4_2:68526633-68526652 Msa0617840:CDS 35.0%
ATAGTTGGTTATACTGCAGT+TGG + chr4_2:68526801-68526820 Msa0617840:CDS 35.0%
CATTAACACAAAGGGCAAAA+GGG - chr4_2:68526841-68526860 None:intergenic 35.0%
ACATTAACACAAAGGGCAAA+AGG - chr4_2:68526842-68526861 None:intergenic 35.0%
CCTAAACTTAACCATCTACT+AGG - chr4_2:68526891-68526910 None:intergenic 35.0%
CCTAGTAGATGGTTAAGTTT+AGG + chr4_2:68526888-68526907 Msa0617840:CDS 35.0%
! ATGGTTAAGTTTAGGACAAG+AGG + chr4_2:68526896-68526915 Msa0617840:CDS 35.0%
! TGGTTAAGTTTAGGACAAGA+GGG + chr4_2:68526897-68526916 Msa0617840:CDS 35.0%
! AAGAGGGTGTAGAAAAAGAT+TGG + chr4_2:68526913-68526932 Msa0617840:CDS 35.0%
! CCAGCAAATAACAAAGCTTT+TGG - chr4_2:68527032-68527051 None:intergenic 35.0%
!! CCAAAAGCTTTGTTATTTGC+TGG + chr4_2:68527029-68527048 Msa0617840:CDS 35.0%
!! TGCTGGATTGTTAACTTGTT+TGG + chr4_2:68527046-68527065 Msa0617840:CDS 35.0%
!! GCTGGATTGTTAACTTGTTT+GGG + chr4_2:68527047-68527066 Msa0617840:CDS 35.0%
CTGGGAATTGGTTGAAATAT+TGG + chr4_2:68527165-68527184 Msa0617840:CDS 35.0%
!!! GGTGCTGTTTTGTCAATTAT+TGG + chr4_2:68527197-68527216 Msa0617840:CDS 35.0%
! AGTGCTGCATATCAACTTTT+AGG + chr4_2:68527242-68527261 Msa0617840:CDS 35.0%
!! ACTTTTAGGTATGTCTGACT+TGG + chr4_2:68527256-68527275 Msa0617840:CDS 35.0%
!! CTTTTAGGTATGTCTGACTT+GGG + chr4_2:68527257-68527276 Msa0617840:CDS 35.0%
GAAATCAAAATTGCCATCGA+AGG - chr4_2:68527329-68527348 None:intergenic 35.0%
! TTGCTTCTTTCCTTAAGTTG+AGG + chr4_2:68527441-68527460 Msa0617840:CDS 35.0%
AATCCAAGTGGAACCTTATA+AGG - chr4_2:68527491-68527510 None:intergenic 35.0%
ACCAAAATTGTATATGTGGC+TGG + chr4_2:68527575-68527594 Msa0617840:CDS 35.0%
! ACCAGCCACATATACAATTT+TGG - chr4_2:68527579-68527598 None:intergenic 35.0%
GGTGCTTTCTTAACATTCTT+AGG + chr4_2:68527596-68527615 Msa0617840:CDS 35.0%
TGAATCTTTGCAAGTCTAAG+AGG + chr4_2:68527639-68527658 Msa0617840:CDS 35.0%
!! CTCATCTACTTTGAGGTATC+TGG + chr4_2:68526414-68526433 Msa0617840:CDS 40.0%
!! ATCTACTTTGAGGTATCTGG+TGG + chr4_2:68526417-68526436 Msa0617840:CDS 40.0%
! ACTGTTGCTTCTTCACCATA+AGG - chr4_2:68526444-68526463 None:intergenic 40.0%
!!! GGTCCACTTTTTGCAATTCT+TGG + chr4_2:68526474-68526493 Msa0617840:CDS 40.0%
TAACAAACCCACCATTTCCA+GGG - chr4_2:68526569-68526588 None:intergenic 40.0%
ATAACAAACCCACCATTTCC+AGG - chr4_2:68526570-68526589 None:intergenic 40.0%
! GAAGCTTTTGGTCCATTTTG+GGG + chr4_2:68526600-68526619 Msa0617840:CDS 40.0%
! AAGCTTTTGGTCCATTTTGG+GGG + chr4_2:68526601-68526620 Msa0617840:CDS 40.0%
! GTGATTCCTGTTTTGTCTTC+AGG + chr4_2:68526708-68526727 Msa0617840:CDS 40.0%
GGTAAACCTGAAGACAAAAC+AGG - chr4_2:68526717-68526736 None:intergenic 40.0%
ACAAAAACTGACACTGTACG+AGG - chr4_2:68526738-68526757 None:intergenic 40.0%
! GGTTATACTGCAGTTGGTTT+AGG + chr4_2:68526807-68526826 Msa0617840:CDS 40.0%
! ATTCCTTTGTTGGCTACTAC+TGG + chr4_2:68527077-68527096 Msa0617840:CDS 40.0%
! TGCCACTTGATCAAGAAGTT+TGG + chr4_2:68527105-68527124 Msa0617840:CDS 40.0%
GCCACTTGATCAAGAAGTTT+GGG + chr4_2:68527106-68527125 Msa0617840:CDS 40.0%
ACCCAAACTTCTTGATCAAG+TGG - chr4_2:68527110-68527129 None:intergenic 40.0%
CTTGATCAAGAAGTTTGGGT+TGG + chr4_2:68527110-68527129 Msa0617840:CDS 40.0%
!! ATCAAGAAGTTTGGGTTGGT+GGG + chr4_2:68527114-68527133 Msa0617840:CDS 40.0%
AGACCTTATAAGGTTCCACT+TGG + chr4_2:68527485-68527504 Msa0617840:CDS 40.0%
AAGGTTCCACTTGGATTCTT+TGG + chr4_2:68527494-68527513 Msa0617840:CDS 40.0%
! TTTTGTTCCATCTGTGCTGT+TGG + chr4_2:68527532-68527551 Msa0617840:CDS 40.0%
ACATAAACCAACAGCACAGA+TGG - chr4_2:68527542-68527561 None:intergenic 40.0%
ATCTTTGCAAGTCTAAGAGG+TGG + chr4_2:68527642-68527661 Msa0617840:CDS 40.0%
CCAATTTATCTCCTACTCCA+CGG - chr4_2:68527676-68527695 None:intergenic 40.0%
!! CTCATCTACTTTGAGGTATC+TGG + chr4_2:68526414-68526433 Msa0617840:CDS 40.0%
!! ATCTACTTTGAGGTATCTGG+TGG + chr4_2:68526417-68526436 Msa0617840:CDS 40.0%
! ACTGTTGCTTCTTCACCATA+AGG - chr4_2:68526444-68526463 None:intergenic 40.0%
!!! GGTCCACTTTTTGCAATTCT+TGG + chr4_2:68526474-68526493 Msa0617840:CDS 40.0%
TAACAAACCCACCATTTCCA+GGG - chr4_2:68526569-68526588 None:intergenic 40.0%
ATAACAAACCCACCATTTCC+AGG - chr4_2:68526570-68526589 None:intergenic 40.0%
! GAAGCTTTTGGTCCATTTTG+GGG + chr4_2:68526600-68526619 Msa0617840:CDS 40.0%
! AAGCTTTTGGTCCATTTTGG+GGG + chr4_2:68526601-68526620 Msa0617840:CDS 40.0%
! GTGATTCCTGTTTTGTCTTC+AGG + chr4_2:68526708-68526727 Msa0617840:CDS 40.0%
GGTAAACCTGAAGACAAAAC+AGG - chr4_2:68526717-68526736 None:intergenic 40.0%
ACAAAAACTGACACTGTACG+AGG - chr4_2:68526738-68526757 None:intergenic 40.0%
! GGTTATACTGCAGTTGGTTT+AGG + chr4_2:68526807-68526826 Msa0617840:CDS 40.0%
! ATTCCTTTGTTGGCTACTAC+TGG + chr4_2:68527077-68527096 Msa0617840:CDS 40.0%
! TGCCACTTGATCAAGAAGTT+TGG + chr4_2:68527105-68527124 Msa0617840:CDS 40.0%
GCCACTTGATCAAGAAGTTT+GGG + chr4_2:68527106-68527125 Msa0617840:CDS 40.0%
ACCCAAACTTCTTGATCAAG+TGG - chr4_2:68527110-68527129 None:intergenic 40.0%
CTTGATCAAGAAGTTTGGGT+TGG + chr4_2:68527110-68527129 Msa0617840:CDS 40.0%
!! ATCAAGAAGTTTGGGTTGGT+GGG + chr4_2:68527114-68527133 Msa0617840:CDS 40.0%
AGACCTTATAAGGTTCCACT+TGG + chr4_2:68527485-68527504 Msa0617840:CDS 40.0%
AAGGTTCCACTTGGATTCTT+TGG + chr4_2:68527494-68527513 Msa0617840:CDS 40.0%
! TTTTGTTCCATCTGTGCTGT+TGG + chr4_2:68527532-68527551 Msa0617840:CDS 40.0%
ACATAAACCAACAGCACAGA+TGG - chr4_2:68527542-68527561 None:intergenic 40.0%
ATCTTTGCAAGTCTAAGAGG+TGG + chr4_2:68527642-68527661 Msa0617840:CDS 40.0%
CCAATTTATCTCCTACTCCA+CGG - chr4_2:68527676-68527695 None:intergenic 40.0%
CTGCAGTTAACAGAGCTTCT+GGG - chr4_2:68526530-68526549 None:intergenic 45.0%
TCTGCAGTTAACAGAGCTTC+TGG - chr4_2:68526531-68526550 None:intergenic 45.0%
GAATTAGCTACAGCATTCCC+TGG + chr4_2:68526549-68526568 Msa0617840:CDS 45.0%
!! TCCATTTTGGGGGTCTCTTA+TGG + chr4_2:68526611-68526630 Msa0617840:CDS 45.0%
!! CCATTTTGGGGGTCTCTTAT+GGG + chr4_2:68526612-68526631 Msa0617840:CDS 45.0%
GATAGTGCTAGCACTTTAGC+TGG + chr4_2:68526978-68526997 Msa0617840:CDS 45.0%
!! GATCAAGAAGTTTGGGTTGG+TGG + chr4_2:68527113-68527132 Msa0617840:CDS 45.0%
!! TGGTGGGTATTTTGCACATG+TGG + chr4_2:68527130-68527149 Msa0617840:CDS 45.0%
!! ATGTGGCTGGTTTGATTGCT+GGG + chr4_2:68527147-68527166 Msa0617840:CDS 45.0%
! CTGGTTTGATTGCTGGGAAT+TGG + chr4_2:68527153-68527172 Msa0617840:CDS 45.0%
GTGGTTTAACACACCTTCGA+TGG + chr4_2:68527313-68527332 Msa0617840:CDS 45.0%
CCGTGGAGTAGGAGATAAAT+TGG + chr4_2:68527673-68527692 Msa0617840:CDS 45.0%
CTGCAGTTAACAGAGCTTCT+GGG - chr4_2:68526530-68526549 None:intergenic 45.0%
TCTGCAGTTAACAGAGCTTC+TGG - chr4_2:68526531-68526550 None:intergenic 45.0%
GAATTAGCTACAGCATTCCC+TGG + chr4_2:68526549-68526568 Msa0617840:CDS 45.0%
!! TCCATTTTGGGGGTCTCTTA+TGG + chr4_2:68526611-68526630 Msa0617840:CDS 45.0%
!! CCATTTTGGGGGTCTCTTAT+GGG + chr4_2:68526612-68526631 Msa0617840:CDS 45.0%
GATAGTGCTAGCACTTTAGC+TGG + chr4_2:68526978-68526997 Msa0617840:CDS 45.0%
!! GATCAAGAAGTTTGGGTTGG+TGG + chr4_2:68527113-68527132 Msa0617840:CDS 45.0%
!! TGGTGGGTATTTTGCACATG+TGG + chr4_2:68527130-68527149 Msa0617840:CDS 45.0%
!! ATGTGGCTGGTTTGATTGCT+GGG + chr4_2:68527147-68527166 Msa0617840:CDS 45.0%
! CTGGTTTGATTGCTGGGAAT+TGG + chr4_2:68527153-68527172 Msa0617840:CDS 45.0%
GTGGTTTAACACACCTTCGA+TGG + chr4_2:68527313-68527332 Msa0617840:CDS 45.0%
CCGTGGAGTAGGAGATAAAT+TGG + chr4_2:68527673-68527692 Msa0617840:CDS 45.0%
! GAGGTATCTGGTGGACCTTA+TGG + chr4_2:68526426-68526445 Msa0617840:CDS 50.0%
! GAAGCAACAGTAAGTGCTGC+AGG + chr4_2:68526453-68526472 Msa0617840:CDS 50.0%
GCTACAGCATTCCCTGGAAA+TGG + chr4_2:68526555-68526574 Msa0617840:CDS 50.0%
ACAGCATTCCCTGGAAATGG+TGG + chr4_2:68526558-68526577 Msa0617840:CDS 50.0%
CAGCATTCCCTGGAAATGGT+GGG + chr4_2:68526559-68526578 Msa0617840:CDS 50.0%
CCCATAAGAGACCCCCAAAA+TGG - chr4_2:68526615-68526634 None:intergenic 50.0%
GCACCAGTAGTAGCCAACAA+AGG - chr4_2:68527083-68527102 None:intergenic 50.0%
! GGGTATTTTGCACATGTGGC+TGG + chr4_2:68527134-68527153 Msa0617840:CDS 50.0%
!! CATGTGGCTGGTTTGATTGC+TGG + chr4_2:68527146-68527165 Msa0617840:CDS 50.0%
!! AAGAGGTGGATTGAGTTCCG+TGG + chr4_2:68527656-68527675 Msa0617840:CDS 50.0%
TGGATTGAGTTCCGTGGAGT+AGG + chr4_2:68527662-68527681 Msa0617840:CDS 50.0%
! GAGGTATCTGGTGGACCTTA+TGG + chr4_2:68526426-68526445 Msa0617840:CDS 50.0%
! GAAGCAACAGTAAGTGCTGC+AGG + chr4_2:68526453-68526472 Msa0617840:CDS 50.0%
GCTACAGCATTCCCTGGAAA+TGG + chr4_2:68526555-68526574 Msa0617840:CDS 50.0%
ACAGCATTCCCTGGAAATGG+TGG + chr4_2:68526558-68526577 Msa0617840:CDS 50.0%
CAGCATTCCCTGGAAATGGT+GGG + chr4_2:68526559-68526578 Msa0617840:CDS 50.0%
CCCATAAGAGACCCCCAAAA+TGG - chr4_2:68526615-68526634 None:intergenic 50.0%
GCACCAGTAGTAGCCAACAA+AGG - chr4_2:68527083-68527102 None:intergenic 50.0%
! GGGTATTTTGCACATGTGGC+TGG + chr4_2:68527134-68527153 Msa0617840:CDS 50.0%
!! CATGTGGCTGGTTTGATTGC+TGG + chr4_2:68527146-68527165 Msa0617840:CDS 50.0%
!! AAGAGGTGGATTGAGTTCCG+TGG + chr4_2:68527656-68527675 Msa0617840:CDS 50.0%
TGGATTGAGTTCCGTGGAGT+AGG + chr4_2:68527662-68527681 Msa0617840:CDS 50.0%
! GGGGGTCTCTTATGGGCTAC+TGG + chr4_2:68526619-68526638 Msa0617840:CDS 60.0%
! GGGGGTCTCTTATGGGCTAC+TGG + chr4_2:68526619-68526638 Msa0617840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 68526273 68527721 68526273 ID=Msa0617840;Name=Msa0617840
chr4_2 mRNA 68526273 68527721 68526273 ID=Msa0617840-mRNA-1;Parent=Msa0617840;Name=Msa0617840-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|482
chr4_2 exon 68526273 68527721 68526273 ID=Msa0617840-mRNA-1:exon:19671;Parent=Msa0617840-mRNA-1
chr4_2 CDS 68526273 68527721 68526273 ID=Msa0617840-mRNA-1:cds;Parent=Msa0617840-mRNA-1
Gene Sequence

>Msa0617840

ATGGGTGCTTATGATTCTGAATCCCTTCACTCTTCAACACAAAACTCTTATCATCAACATCTTTTAAACCAAAGAGAAGAAGAAGATTCAAACCCCAAAACCAAATCACAAAAAAAGCTAGCACTTCTCCCTCTAATCTTTCTCATCTACTTTGAGGTATCTGGTGGACCTTATGGTGAAGAAGCAACAGTAAGTGCTGCAGGTCCACTTTTTGCAATTCTTGGATTTATAATTTTCCCATTTATTTGGAGTATCCCAGAAGCTCTGTTAACTGCAGAATTAGCTACAGCATTCCCTGGAAATGGTGGGTTTGTTATTTGGGCTAATGAAGCTTTTGGTCCATTTTGGGGGTCTCTTATGGGCTACTGGAAATATTTTTGTGGTGTCATAAATTTAGCATCTTTCCCAATTCTATGTATAGATTATCTCAAAGTTGTGATTCCTGTTTTGTCTTCAGGTTTACCTCGTACAGTGTCAGTTTTTGTCTCAACTGCTTTGTTGTCTTTTTTGAATTATTCTGGTTTAGCTATAGTTGGTTATACTGCAGTTGGTTTAGGTGTTATTTCCCTTTTGCCCTTTGTGTTAATGTCTTTGATTTCAGTGCCTAAAATTGATCCTAGTAGATGGTTAAGTTTAGGACAAGAGGGTGTAGAAAAAGATTGGACACTTTTTTTCAATACTATTTTTTGGAACTTGAATTTTTGGGATAGTGCTAGCACTTTAGCTGGTGAAGTTGAAGAGCCACATAAAACTTTTCCAAAAGCTTTGTTATTTGCTGGATTGTTAACTTGTTTGGGTTATATAATTCCTTTGTTGGCTACTACTGGTGCTATGCCACTTGATCAAGAAGTTTGGGTTGGTGGGTATTTTGCACATGTGGCTGGTTTGATTGCTGGGAATTGGTTGAAATATTGGATGGAAATTGGTGCTGTTTTGTCAATTATTGGATTATTTGAAGCTCAATTAAGTAGTGCTGCATATCAACTTTTAGGTATGTCTGACTTGGGATTCATACCAAAAATATTTGGTGAAAGATCAAAGTGGTTTAACACACCTTCGATGGCAATTTTGATTTCAACAATAATATCACTTGGTATGTCTTTTTTTAGTTTTACAGAGATTATATCTACAGTTAATTTTTTGTATAGTTTAGGTATGCTTTTGGAGTTTGCTTCTTTCCTTAAGTTGAGGAAAAAATTCCCTACAATGAAAAGACCTTATAAGGTTCCACTTGGATTCTTTGGTTTAATTCTAATGTGTTTTGTTCCATCTGTGCTGTTGGTTTATGTGATGACTGTTGCTACCAAAATTGTATATGTGGCTGGTGCTTTCTTAACATTCTTAGGGATAGTGTTGTATTATTTCATGAATCTTTGCAAGTCTAAGAGGTGGATTGAGTTCCGTGGAGTAGGAGATAAATTGGATGAAGATGAAGATATTATTATATAG

Protein sequence

>Msa0617840

MGAYDSESLHSSTQNSYHQHLLNQREEEDSNPKTKSQKKLALLPLIFLIYFEVSGGPYGEEATVSAAGPLFAILGFIIFPFIWSIPEALLTAELATAFPGNGGFVIWANEAFGPFWGSLMGYWKYFCGVINLASFPILCIDYLKVVIPVLSSGLPRTVSVFVSTALLSFLNYSGLAIVGYTAVGLGVISLLPFVLMSLISVPKIDPSRWLSLGQEGVEKDWTLFFNTIFWNLNFWDSASTLAGEVEEPHKTFPKALLFAGLLTCLGYIIPLLATTGAMPLDQEVWVGGYFAHVAGLIAGNWLKYWMEIGAVLSIIGLFEAQLSSAAYQLLGMSDLGFIPKIFGERSKWFNTPSMAILISTIISLGMSFFSFTEIISTVNFLYSLGMLLEFASFLKLRKKFPTMKRPYKVPLGFFGLILMCFVPSVLLVYVMTVATKIVYVAGAFLTFLGIVLYYFMNLCKSKRWIEFRGVGDKLDEDEDIII*