AlfalfaGEDB | Msa0565010

M. sativa cultivar zhongmu-4 / Msa0565010

KEGG: -
GO: -
PFAM: PF05097.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565010	AET04255.2	87.619	525	36	5	1	502	1	519	0.0	850

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565010	G7LJF0	87.619	525	36	5	1	502	1	519	0.0	850

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0565010	Msa0701210	0.814806	1.276924e-51	-8.615850e-47
Msa0565010	Msa1174220	0.820792	5.688273e-53	-8.615850e-47
Msa0565010	Msa1460890	0.807808	4.218449e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565010	MtrunA17_Chr8g0379141	87.716	521	35	5	1	498	1	515	0.0	843
Msa0565010	MtrunA17_Chr2g0283911	41.929	477	169	16	2	382	1	465	1.62e-79	264
Msa0565010	MtrunA17_Chr2g0283911	51.351	111	41	3	383	493	568	665	1.61e-19	92.8
Msa0565010	MtrunA17_Chr4g0041221	31.250	320	159	10	1	266	107	419	2.04e-27	117
Msa0565010	MtrunA17_Chr2g0325871	32.509	283	155	12	1	266	6	269	1.14e-21	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565010	AT1G29240.1	27.891	588	300	20	2	493	1	560	1.09e-34	139
Msa0565010	AT5G45850.1	27.390	544	226	22	2	493	1	427	3.77e-26	112
Msa0565010	AT2G30990.3	31.541	279	160	10	1	265	7	268	1.55e-24	108
Msa0565010	AT2G30990.4	29.967	307	158	11	1	265	7	298	3.91e-24	107
Msa0565010	AT2G30990.1	29.967	307	158	11	1	265	7	298	3.91e-24	107
Msa0565010	AT2G30990.5	29.967	307	158	11	1	265	7	298	3.91e-24	107
Msa0565010	AT2G30990.2	29.967	307	158	11	1	265	7	298	3.91e-24	107
Msa0565010	AT4G18630.1	25.232	539	279	20	2	493	1	462	1.31e-18	89.4
Msa0565010	AT2G34170.4	28.539	445	234	17	116	493	79	506	1.58e-13	73.6
Msa0565010	AT2G34170.6	28.539	445	234	17	116	493	79	506	1.58e-13	73.6

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Find 111 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTCATGACCTTGGCT+TGG	0.457228	4_1:-65848411	None:intergenic
AAAGCTACAGAATTTGGAAG+AGG	0.565842	4_1:+65847313	Msa0565010:CDS
AAAGTCATAGCCTTTGCTGC+AGG	0.531670	4_1:-65847497	None:intergenic
AAATTCAAGGAACCTTTCAA+TGG	0.425265	4_1:+65848470	Msa0565010:CDS
AAATTGAAATTCCCAAGCCA+AGG	0.620852	4_1:+65848399	Msa0565010:CDS
AACCTCATAGGAAGACCACA+TGG	0.651576	4_1:-65847810	None:intergenic
AACTTTCATGACCTTGGCTT+GGG	0.359161	4_1:-65848410	None:intergenic
AAGAGGTATAATGCTTACTC+TGG	0.580329	4_1:+65848258	Msa0565010:CDS
AAGCTACAGAATTTGGAAGA+GGG	0.613004	4_1:+65847314	Msa0565010:CDS
AAGGTGACTTTGGCAGTGGT+GGG	0.542375	4_1:-65848635	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATGAAAAGCTACAGAATT+TGG	+	chr4_1:65847307-65847326	Msa0565010:CDS	30.0%
ACAGAATCATTATGTGTAAG+CGG	+	chr4_1:65847389-65847408	Msa0565010:CDS	30.0%
GAATTCTTAATGCATGAACT+AGG	-	chr4_1:65847740-65847759	None:intergenic	30.0%
ATAGAAAACTCAGACTAACA+TGG	-	chr4_1:65847903-65847922	None:intergenic	30.0%
TGATTTACAAAATGAGGTCA+AGG	-	chr4_1:65848104-65848123	None:intergenic	30.0%
CCAAAAGAAGTTCAAATTCA+AGG	+	chr4_1:65848457-65848476	Msa0565010:CDS	30.0%
AAATTCAAGGAACCTTTCAA+TGG	+	chr4_1:65848470-65848489	Msa0565010:CDS	30.0%
TGATCATGATTTCTGTTCTA+AGG	+	chr4_1:65848821-65848840	Msa0565010:CDS	30.0%
ATTAGCTCAATGGATAAATG+AGG	-	chr4_1:65848850-65848869	None:intergenic	30.0%
TGGCAATTAACTTTCATTAC+AGG	+	chr4_1:65848906-65848925	Msa0565010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	65847011	65850430	65847011	ID=Msa0565010;Name=Msa0565010
chr4_1	mRNA	65847011	65850430	65847011	ID=Msa0565010-mRNA-1;Parent=Msa0565010;Name=Msa0565010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.33\|0.5\|1\|1\|1\|4\|137\|578
chr4_1	exon	65847011	65847829	65847011	ID=Msa0565010-mRNA-1:exon:21257;Parent=Msa0565010-mRNA-1
chr4_1	exon	65848168	65848842	65848168	ID=Msa0565010-mRNA-1:exon:21258;Parent=Msa0565010-mRNA-1
chr4_1	exon	65849011	65849053	65849011	ID=Msa0565010-mRNA-1:exon:21259;Parent=Msa0565010-mRNA-1
chr4_1	exon	65850094	65850430	65850094	ID=Msa0565010-mRNA-1:exon:21260;Parent=Msa0565010-mRNA-1
chr4_1	CDS	65847011	65847829	65847011	ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1	CDS	65848168	65848842	65848168	ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1	CDS	65849011	65849053	65849011	ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1	CDS	65850094	65850293	65850094	ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1	three_prime_UTR	65850294	65850430	65850294	ID=Msa0565010-mRNA-1:three_prime_utr;Parent=Msa0565010-mRNA-1

Gene Sequence

>Msa0565010

ATGATGAATGAAGGGAAATTGAATATTAATGCTCCTCTTATGTCTGTGAGACGCTCTATTTGTACACCAACATCTTCAACTGAAGCAAAGATCAAGATATTAGATAATTCAGCACATTCTCTTCAATACAATAAATCAGACATGACTCAAGACCAAGTAACAGAACCTGTTTTCGTGTCTTTCAATTGGGAGCATATCCCTGGTAAATCTAAACTTGATAACAAGGTTAGGTCCTCAAGTAAATCGAATTCTTTAAGTGACATTATGAATAAAGTAGATCATGACAAAGGACAAAACAATGAAAAGCTACAGAATTTGGAAGAGGGTGACGACGACGACGATGATGCTTTTTCAGATGCCTTAGAAACACTGTCTTCAACAGAATCATTATGTGTAAGCGGTTTGGATAATTTGGATGCAAACAAGTGTAGAATCTCTTCTACTGATGATAAACAAGCTCAAGAATTCATGATGAACCGGTTTTTACCTGCAGCAAAGGCTATGACTTTACAACCTCATCAACATGCTCCAAGAAAACAATCTGTTCTGTTACAACAACCTAGCACCAAATTGGTTAGTGAGGAAAAGAACTCTTTTGTTAACAATAGAAATATCACTGACATTGTACCATACACGTGTCAATACCAAGAAGAGGAAGAAGAAGAAAGTGATCATGATGAAACTGATGATTATGCAAATATTTCAGCTAAGGGTTGTGGATTATTTCCTAGTTCATGCATTAAGAATTCATTGTGTTTATTAAATCCAATGCCTGACACAAAAATGGAGAACCAAATTCCCATGTGGTCTTCCTATGAGGCTTGGGATGCTATTCATAAAAGCAAATCAAGCTCCGGAGCCTCATCACCAGATATGCATGAGGCAAGAAAAAAATGGACGAGTGAATCAAAGAGGTATAATGCTTACTCTGGTGAACTTAGTCAGATAAGTAGGATCTCTTCATTTCGTCGGTCAGGAGCTGCTGCTGCTGCTGGCGTATCTTCTTTTCGAGGTAGGCCTCAATCTCAGGCCGAGAATAACCAAATTAGAAAATTGAAATTCCCAAGCCAAGGTCATGAAAGTTTTCAAGAGGCGCAGTCACAAGGATCCAAAAGAAGTTCAAATTCAAGGAACCTTTCAATGGAAATTGGCCAAGAATCCATGTCCTTGCAACTTGTGCAAAGCTCATTTGACAAAGGTACAAAGTTTAACAACAACAAGCAAATTGTTGTAGTTGATGATGGTTTAGGAAAAAGTGATGCTAAAAGTGTTATGCACCTTCTTTCCCCACCACTGCCAAAGTCACCTTCTGAGTCGTGGCTTTGTCGTGCATTGCCTTTAGTTTCTTTGAAGAATCAGTCCGTGTATTCGAGTCGAGGAACACAATCACATGCTGTTAAAAGGATAGGATATAGTAGAGCATCCAGCTATAGCAAGTGGGAAACAATAGTGAAAACTTCAAATTTGCATCATGATCATGATTTCTGTTCTAAGGCTTGTGGGACTAAATATTGGTTTGTTTTGCATGATATCATAGAAGAGAAGTCTGATGATCTTCAAGACCTTCTTGGTAATGCTAATGGTAATCCTTTGAGGATTGTAGTGTTGGAGCGCGTGCTTGGTTGGGTGGGGGAGTGTTTTTGCAGTTTGGTCCAAGATCCTTGTTATGGCCAATTCTGTGACAAGATACAAAATCAGGATATGGAGACATGTACAAAAAGAATGACAGTGTCCTAA

Protein sequence

>Msa0565010

MMNEGKLNINAPLMSVRRSICTPTSSTEAKIKILDNSAHSLQYNKSDMTQDQVTEPVFVSFNWEHIPGKSKLDNKVRSSSKSNSLSDIMNKVDHDKGQNNEKLQNLEEGDDDDDDAFSDALETLSSTESLCVSGLDNLDANKCRISSTDDKQAQEFMMNRFLPAAKAMTLQPHQHAPRKQSVLLQQPSTKLVSEEKNSFVNNRNITDIVPYTCQYQEEEEEESDHDETDDYANISAKGCGLFPSSCIKNSLCLLNPMPDTKMENQIPMWSSYEAWDAIHKSKSSSGASSPDMHEARKKWTSESKRYNAYSGELSQISRISSFRRSGAAAAAGVSSFRGRPQSQAENNQIRKLKFPSQGHESFQEAQSQGSKRSSNSRNLSMEIGQESMSLQLVQSSFDKGTKFNNNKQIVVVDDGLGKSDAKSVMHLLSPPLPKSPSESWLCRALPLVSLKNQSVYSSRGTQSHAVKRIGYSRASSYSKWETIVKTSNLHHDHDFCSKACGTKYWFVLHDIIEEKSDDLQDLLGNANGNPLRIVVLERVLGWVGECFCSLVQDPCYGQFCDKIQNQDMETCTKRMTVS*