AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565010 MtrunA17_Chr8g0379141 87.716 521 35 5 1 498 1 515 0.0 843
Msa0565010 MtrunA17_Chr2g0283911 41.929 477 169 16 2 382 1 465 1.62e-79 264
Msa0565010 MtrunA17_Chr2g0283911 51.351 111 41 3 383 493 568 665 1.61e-19 92.8
Msa0565010 MtrunA17_Chr4g0041221 31.250 320 159 10 1 266 107 419 2.04e-27 117
Msa0565010 MtrunA17_Chr2g0325871 32.509 283 155 12 1 266 6 269 1.14e-21 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565010 AT1G29240.1 27.891 588 300 20 2 493 1 560 1.09e-34 139
Msa0565010 AT5G45850.1 27.390 544 226 22 2 493 1 427 3.77e-26 112
Msa0565010 AT2G30990.3 31.541 279 160 10 1 265 7 268 1.55e-24 108
Msa0565010 AT2G30990.4 29.967 307 158 11 1 265 7 298 3.91e-24 107
Msa0565010 AT2G30990.1 29.967 307 158 11 1 265 7 298 3.91e-24 107
Msa0565010 AT2G30990.5 29.967 307 158 11 1 265 7 298 3.91e-24 107
Msa0565010 AT2G30990.2 29.967 307 158 11 1 265 7 298 3.91e-24 107
Msa0565010 AT4G18630.1 25.232 539 279 20 2 493 1 462 1.31e-18 89.4
Msa0565010 AT2G34170.4 28.539 445 234 17 116 493 79 506 1.58e-13 73.6
Msa0565010 AT2G34170.6 28.539 445 234 17 116 493 79 506 1.58e-13 73.6
Msa0565010 AT2G34170.2 28.539 445 234 17 116 493 79 506 1.58e-13 73.6
Msa0565010 AT2G34170.1 28.539 445 234 17 116 493 79 506 1.58e-13 73.6
Msa0565010 AT2G34170.5 28.539 445 234 17 116 493 79 506 1.58e-13 73.6
Msa0565010 AT2G34170.3 28.539 445 234 17 116 493 79 506 1.58e-13 73.6

Find 111 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAATTTGAACTTCTTT+TGG 0.115235 4_1:-65848457 None:intergenic
TTTCTTCTTCTTCCTCTTCT+TGG 0.145703 4_1:-65847655 None:intergenic
TGTAAGCGGTTTGGATAATT+TGG 0.219338 4_1:+65847403 Msa0565010:CDS
CAATGAAAAGCTACAGAATT+TGG 0.225414 4_1:+65847307 Msa0565010:CDS
TTTCTTGCCTCATGCATATC+TGG 0.234829 4_1:-65848216 None:intergenic
CACAATCACATGCTGTTAAA+AGG 0.240194 4_1:+65848730 Msa0565010:CDS
AGGAACCTTTCAATGGAAAT+TGG 0.242168 4_1:+65848477 Msa0565010:CDS
AGGAAGACCACATGGGAATT+TGG 0.262676 4_1:-65847802 None:intergenic
TGATCATGATTTCTGTTCTA+AGG 0.272741 4_1:+65848821 Msa0565010:CDS
GATGATCTTCAAGACCTTCT+TGG 0.282619 4_1:+65850105 Msa0565010:CDS
TGTTGAAGACAGTGTTTCTA+AGG 0.291639 4_1:-65847369 None:intergenic
ACAACAACCTAGCACCAAAT+TGG 0.300860 4_1:+65847562 Msa0565010:CDS
AGGCTTGTGGGACTAAATAT+TGG 0.310247 4_1:+65849009 Msa0565010:intron
CGAAAACAGGTTCTGTTACT+TGG 0.317824 4_1:-65847163 None:intergenic
TCAGGAGCTGCTGCTGCTGC+TGG 0.322511 4_1:+65848321 Msa0565010:CDS
TTTGTATCTTGTCACAGAAT+TGG 0.338239 4_1:-65850227 None:intergenic
AACTTTCATGACCTTGGCTT+GGG 0.359161 4_1:-65848410 None:intergenic
AGCGCGTGCTTGGTTGGGTG+GGG 0.365811 4_1:+65850166 Msa0565010:CDS
CTATATTCTTTCAGGCTTGT+GGG 0.366361 4_1:+65848997 Msa0565010:intron
CCTATATTCTTTCAGGCTTG+TGG 0.371093 4_1:+65848996 Msa0565010:intron
TGTTTCCCACTTGCTATAGC+TGG 0.374061 4_1:-65848772 None:intergenic
GTTGCAAGGACATGGATTCT+TGG 0.383545 4_1:-65848500 None:intergenic
ATCATTATGTGTAAGCGGTT+TGG 0.386450 4_1:+65847394 Msa0565010:CDS
GACCTTCTTGGTAATGCTAA+TGG 0.391443 4_1:+65850117 Msa0565010:CDS
TCGAGGTAGGCCTCAATCTC+AGG 0.393361 4_1:+65848356 Msa0565010:CDS
TGTTGGAGCGCGTGCTTGGT+TGG 0.402308 4_1:+65850160 Msa0565010:CDS
CTCAAGAATTCATGATGAAC+CGG 0.406764 4_1:+65847468 Msa0565010:CDS
ATCTCTTCATTTCGTCGGTC+AGG 0.413475 4_1:+65848303 Msa0565010:CDS
GAGCGCGTGCTTGGTTGGGT+GGG 0.420886 4_1:+65850165 Msa0565010:CDS
TTGGTCCAAGATCCTTGTTA+TGG 0.421854 4_1:+65850204 Msa0565010:CDS
TCCCATGTGGTCTTCCTATG+AGG 0.424888 4_1:+65847808 Msa0565010:CDS
AAATTCAAGGAACCTTTCAA+TGG 0.425265 4_1:+65848470 Msa0565010:CDS
AATATTTCAGCTAAGGGTTG+TGG 0.425504 4_1:+65847707 Msa0565010:CDS
TCCTTTGAGGATTGTAGTGT+TGG 0.426435 4_1:+65850143 Msa0565010:CDS
CTTGAAAACTTTCATGACCT+TGG 0.430428 4_1:-65848416 None:intergenic
GTTGTAGTTGATGATGGTTT+AGG 0.433631 4_1:+65848576 Msa0565010:CDS
CAAGATACAAAATCAGGATA+TGG 0.442865 4_1:+65850239 Msa0565010:CDS
CTAAACTTGATAACAAGGTT+AGG 0.446055 4_1:+65847219 Msa0565010:CDS
ATGCTAATGGTAATCCTTTG+AGG 0.451428 4_1:+65850130 Msa0565010:CDS
ATTGGCCATAACAAGGATCT+TGG 0.451471 4_1:-65850209 None:intergenic
TCTTGGTATTGACACGTGTA+TGG 0.453421 4_1:-65847638 None:intergenic
AAACTTTCATGACCTTGGCT+TGG 0.457228 4_1:-65848411 None:intergenic
CCAAAAGAAGTTCAAATTCA+AGG 0.459922 4_1:+65848457 Msa0565010:CDS
CTTGGCCAATTTCCATTGAA+AGG 0.462261 4_1:-65848482 None:intergenic
CTGTGACAAGATACAAAATC+AGG 0.462389 4_1:+65850233 Msa0565010:CDS
TCACTAACCAATTTGGTGCT+AGG 0.464499 4_1:-65847569 None:intergenic
GTTGGAGCGCGTGCTTGGTT+GGG 0.468309 4_1:+65850161 Msa0565010:CDS
GAAGGTGACTTTGGCAGTGG+TGG 0.472083 4_1:-65848636 None:intergenic
GTAGTGTTGGAGCGCGTGCT+TGG 0.475481 4_1:+65850156 Msa0565010:CDS
TTGCACAAGTTGCAAGGACA+TGG 0.478353 4_1:-65848508 None:intergenic
CAAATTGTTGTAGTTGATGA+TGG 0.479110 4_1:+65848570 Msa0565010:CDS
CAATTGAAAGACACGAAAAC+AGG 0.484249 4_1:-65847176 None:intergenic
TTGGCAGTGGTGGGGAAAGA+AGG 0.486436 4_1:-65848626 None:intergenic
TTATTCTCGGCCTGAGATTG+AGG 0.486901 4_1:-65848366 None:intergenic
GGAGCGCGTGCTTGGTTGGG+TGG 0.486901 4_1:+65850164 Msa0565010:CDS
GCGCGTGCTTGGTTGGGTGG+GGG 0.488762 4_1:+65850167 Msa0565010:CDS
TTCAATTGGGAGCATATCCC+TGG 0.489660 4_1:+65847191 Msa0565010:CDS
GAGCGTCTCACAGACATAAG+AGG 0.491919 4_1:-65847044 None:intergenic
TATGCAAATATTTCAGCTAA+GGG 0.492036 4_1:+65847701 Msa0565010:CDS
TTTGCTTCAGTTGAAGATGT+TGG 0.500023 4_1:-65847077 None:intergenic
TACCATTAGCATTACCAAGA+AGG 0.500761 4_1:-65850119 None:intergenic
TTATGCAAATATTTCAGCTA+AGG 0.504055 4_1:+65847700 Msa0565010:CDS
GTGAACTTAGTCAGATAAGT+AGG 0.505305 4_1:+65848280 Msa0565010:CDS
CACGACTCAGAAGGTGACTT+TGG 0.507091 4_1:-65848645 None:intergenic
TAGTTATCGATGTGGGACTT+AGG 0.510078 4_1:-65850289 None:intergenic
CATATCTGGTGATGAGGCTC+CGG 0.516580 4_1:-65848202 None:intergenic
TTATCAAGTTTAGATTTACC+AGG 0.517411 4_1:-65847209 None:intergenic
CATAAAAGCAAATCAAGCTC+CGG 0.529187 4_1:+65848183 Msa0565010:CDS
GAATTCTTAATGCATGAACT+AGG 0.530027 4_1:-65847737 None:intergenic
AAAGTCATAGCCTTTGCTGC+AGG 0.531670 4_1:-65847497 None:intergenic
AAGGTGACTTTGGCAGTGGT+GGG 0.542375 4_1:-65848635 None:intergenic
TAAAGAATTCGATTTACTTG+AGG 0.545338 4_1:-65847243 None:intergenic
TCACATGCTGTTAAAAGGAT+AGG 0.546488 4_1:+65848735 Msa0565010:CDS
TAGGGAGGAGAACGTAAGAA+AGG 0.547308 4_1:-65850414 None:intergenic
TGGAACATAATGATGAATGA+AGG 0.554781 4_1:+65847002 None:intergenic
GAGCATCCAGCTATAGCAAG+TGG 0.557921 4_1:+65848766 Msa0565010:CDS
TTTCAAGAGGCGCAGTCACA+AGG 0.562045 4_1:+65848432 Msa0565010:CDS
GTAGGATCTCTTCATTTCGT+CGG 0.565108 4_1:+65848298 Msa0565010:CDS
TGATTCTTCAAAGAAACTAA+AGG 0.565821 4_1:-65848684 None:intergenic
AAAGCTACAGAATTTGGAAG+AGG 0.565842 4_1:+65847313 Msa0565010:CDS
TGAGCTTTGCACAAGTTGCA+AGG 0.572711 4_1:-65848514 None:intergenic
ACAGAATCATTATGTGTAAG+CGG 0.580192 4_1:+65847389 Msa0565010:CDS
AAGAGGTATAATGCTTACTC+TGG 0.580329 4_1:+65848258 Msa0565010:CDS
CAAAGTCACCTTCTGAGTCG+TGG 0.581092 4_1:+65848646 Msa0565010:CDS
ATCGATAACTATGATAACTA+CGG 0.583059 4_1:+65850301 Msa0565010:three_prime_UTR
TCAGAAGGTGACTTTGGCAG+TGG 0.585919 4_1:-65848639 None:intergenic
GTTATCATAGTTATCGATGT+GGG 0.590069 4_1:-65850296 None:intergenic
CTCATGCATATCTGGTGATG+AGG 0.593781 4_1:-65848208 None:intergenic
GGAACATAATGATGAATGAA+GGG 0.600386 4_1:+65847003 None:intergenic
TTTCTTGGAGCATGTTGATG+AGG 0.603285 4_1:-65847524 None:intergenic
TAGCACCAAATTGGTTAGTG+AGG 0.603329 4_1:+65847571 Msa0565010:CDS
CACGTGTCAATACCAAGAAG+AGG 0.603427 4_1:+65847643 Msa0565010:CDS
CGACAAAGCCACGACTCAGA+AGG 0.606984 4_1:-65848654 None:intergenic
TAAATCTAAACTTGATAACA+AGG 0.612595 4_1:+65847214 Msa0565010:CDS
AAGCTACAGAATTTGGAAGA+GGG 0.613004 4_1:+65847314 Msa0565010:CDS
TCACAGAATTGGCCATAACA+AGG 0.619953 4_1:-65850216 None:intergenic
TATCAAGTTTAGATTTACCA+GGG 0.620380 4_1:-65847208 None:intergenic
AAATTGAAATTCCCAAGCCA+AGG 0.620852 4_1:+65848399 Msa0565010:CDS
TGTTCCTCGACTCGAATACA+CGG 0.631344 4_1:-65848709 None:intergenic
AACCTCATAGGAAGACCACA+TGG 0.651576 4_1:-65847810 None:intergenic
TCCAACACTACAATCCTCAA+AGG 0.654004 4_1:-65850144 None:intergenic
AGGTGACTTTGGCAGTGGTG+GGG 0.655340 4_1:-65848634 None:intergenic
AATAAAGTAGATCATGACAA+AGG 0.655952 4_1:+65847278 Msa0565010:CDS
AATGGACGAGTGAATCAAAG+AGG 0.657948 4_1:+65848241 Msa0565010:CDS
AGCATCCAGCTATAGCAAGT+GGG 0.660589 4_1:+65848767 Msa0565010:CDS
GTGCAAAGCTCATTTGACAA+AGG 0.661335 4_1:+65848525 Msa0565010:CDS
CAGTCCGTGTATTCGAGTCG+AGG 0.663096 4_1:+65848705 Msa0565010:CDS
AGTTATCATAGTTATCGATG+TGG 0.666274 4_1:-65850297 None:intergenic
CTCATCACCAGATATGCATG+AGG 0.681013 4_1:+65848209 Msa0565010:CDS
ACCTCATAGGAAGACCACAT+GGG 0.707126 4_1:-65847809 None:intergenic
TGGAGAACCAAATTCCCATG+TGG 0.730190 4_1:+65847795 Msa0565010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGATTTACAAAATG+AGG - chr4_1:65848110-65848129 None:intergenic 15.0%
!!! CAAAGATATAAATTTTTTAC+TGG + chr4_1:65848886-65848905 Msa0565010:intron 15.0%
!! ATATATAGGTTACTTAAATA+TGG - chr4_1:65849583-65849602 None:intergenic 15.0%
!!! TAATATTTGAGATTTTATCA+AGG + chr4_1:65849959-65849978 Msa0565010:intron 15.0%
!! AAAAAATTATTTACTCTACT+AGG - chr4_1:65850378-65850397 None:intergenic 15.0%
!!! TAAATCTAAACTTGATAACA+AGG + chr4_1:65847214-65847233 Msa0565010:CDS 20.0%
!!! TTTTCTAATTTGGTTATTCT+CGG - chr4_1:65848382-65848401 None:intergenic 20.0%
!!! GGAATTTCAATTTTCTAATT+TGG - chr4_1:65848392-65848411 None:intergenic 20.0%
!! AACATAAAATATTAGCTCAA+TGG - chr4_1:65848860-65848879 None:intergenic 20.0%
!! TATATTTCCTATATTCTTTC+AGG + chr4_1:65848989-65849008 Msa0565010:intron 20.0%
!!! TGAAATTTTGAATACATTGA+AGG - chr4_1:65849266-65849285 None:intergenic 20.0%
!!! ATTAGTTTATATGTACTTCT+GGG - chr4_1:65849299-65849318 None:intergenic 20.0%
!! ATTTATGAAATTGCAAGAAA+AGG - chr4_1:65849424-65849443 None:intergenic 20.0%
!!! ATTGATCTGATTTTCATATT+TGG - chr4_1:65849452-65849471 None:intergenic 20.0%
!!! ATTTTAATCGCTTGTTTAAA+TGG - chr4_1:65849903-65849922 None:intergenic 20.0%
! TATCAAGTTTAGATTTACCA+GGG - chr4_1:65847211-65847230 None:intergenic 25.0%
! TTATCAAGTTTAGATTTACC+AGG - chr4_1:65847212-65847231 None:intergenic 25.0%
! TAAAGAATTCGATTTACTTG+AGG - chr4_1:65847246-65847265 None:intergenic 25.0%
! AATAAAGTAGATCATGACAA+AGG + chr4_1:65847278-65847297 Msa0565010:CDS 25.0%
! TTATGCAAATATTTCAGCTA+AGG + chr4_1:65847700-65847719 Msa0565010:CDS 25.0%
! TATGCAAATATTTCAGCTAA+GGG + chr4_1:65847701-65847720 Msa0565010:CDS 25.0%
!! CTAAATTGAGAACTTTTGTT+AGG - chr4_1:65847842-65847861 None:intergenic 25.0%
!!! CAATTTAGCTCTTATAAATC+AGG + chr4_1:65847854-65847873 Msa0565010:intron 25.0%
! AAATTGCTATCTTGATTGAA+CGG + chr4_1:65848046-65848065 Msa0565010:intron 25.0%
! TGATTCTTCAAAGAAACTAA+AGG - chr4_1:65848687-65848706 None:intergenic 25.0%
!!! TTTGTTTTGCATGATATCAT+AGG + chr4_1:65849032-65849051 Msa0565010:CDS 25.0%
! ATAGGTAACTAAATTTCTCA+TGG + chr4_1:65849050-65849069 Msa0565010:intron 25.0%
! GACAACAAATGTAAACATAA+TGG - chr4_1:65849117-65849136 None:intergenic 25.0%
! TACTGATGTATCAAGAAAAA+TGG - chr4_1:65849170-65849189 None:intergenic 25.0%
! AGAAGAATACATATCCTAAT+TGG + chr4_1:65849198-65849217 Msa0565010:intron 25.0%
!! GTTTTTATTGATCACCAATT+AGG - chr4_1:65849215-65849234 None:intergenic 25.0%
!! AAAACAAACAAAGCTTCTTT+TGG + chr4_1:65849230-65849249 Msa0565010:intron 25.0%
! TTAGTTTATATGTACTTCTG+GGG - chr4_1:65849298-65849317 None:intergenic 25.0%
!! CATTAGTTTATATGTACTTC+TGG - chr4_1:65849300-65849319 None:intergenic 25.0%
! GATTAATCTACAGCATATAT+AGG - chr4_1:65849597-65849616 None:intergenic 25.0%
!! CTTTTTAAATGCCATGAAAT+AGG + chr4_1:65849616-65849635 Msa0565010:intron 25.0%
!! TGTTAGTATCATGTTGATAA+TGG - chr4_1:65849712-65849731 None:intergenic 25.0%
!! GGTTATGAAGTTTCTTTTAA+CGG - chr4_1:65849748-65849767 None:intergenic 25.0%
!!! AGAATAAATTTGCTAGAGTA+TGG - chr4_1:65849769-65849788 None:intergenic 25.0%
!! TTTAAATGGTAATGCAACAA+TGG - chr4_1:65849889-65849908 None:intergenic 25.0%
! ATCGATAACTATGATAACTA+CGG + chr4_1:65850301-65850320 Msa0565010:three_prime_UTR 25.0%
! TGTTTTCGTGTCTTTCAATT+GGG + chr4_1:65847178-65847197 Msa0565010:CDS 30.0%
! CTAAACTTGATAACAAGGTT+AGG + chr4_1:65847219-65847238 Msa0565010:CDS 30.0%
CAATGAAAAGCTACAGAATT+TGG + chr4_1:65847307-65847326 Msa0565010:CDS 30.0%
ACAGAATCATTATGTGTAAG+CGG + chr4_1:65847389-65847408 Msa0565010:CDS 30.0%
! AACAGAACAGATTGTTTTCT+TGG - chr4_1:65847542-65847561 None:intergenic 30.0%
GAATTCTTAATGCATGAACT+AGG - chr4_1:65847740-65847759 None:intergenic 30.0%
ATAGAAAACTCAGACTAACA+TGG - chr4_1:65847903-65847922 None:intergenic 30.0%
TGATTTACAAAATGAGGTCA+AGG - chr4_1:65848104-65848123 None:intergenic 30.0%
! CCTTGAATTTGAACTTCTTT+TGG - chr4_1:65848460-65848479 None:intergenic 30.0%
CCAAAAGAAGTTCAAATTCA+AGG + chr4_1:65848457-65848476 Msa0565010:CDS 30.0%
AAATTCAAGGAACCTTTCAA+TGG + chr4_1:65848470-65848489 Msa0565010:CDS 30.0%
!! CAAATTGTTGTAGTTGATGA+TGG + chr4_1:65848570-65848589 Msa0565010:CDS 30.0%
TGATCATGATTTCTGTTCTA+AGG + chr4_1:65848821-65848840 Msa0565010:CDS 30.0%
ATTAGCTCAATGGATAAATG+AGG - chr4_1:65848850-65848869 None:intergenic 30.0%
TGGCAATTAACTTTCATTAC+AGG + chr4_1:65848906-65848925 Msa0565010:intron 30.0%
TGAATGCTGAGGTTTATATA+AGG - chr4_1:65848938-65848957 None:intergenic 30.0%
AGCATTCAAAATCTTAGAGA+TGG + chr4_1:65848950-65848969 Msa0565010:intron 30.0%
TATGAAATTGCAAGAAAAGG+CGG - chr4_1:65849421-65849440 None:intergenic 30.0%
ACTAGCAAATTTCAGTGTTT+AGG + chr4_1:65849665-65849684 Msa0565010:intron 30.0%
!! ATATCAGTTCAATGGATTAC+CGG - chr4_1:65850044-65850063 None:intergenic 30.0%
ATATGAGCATATCAGTTCAA+TGG - chr4_1:65850052-65850071 None:intergenic 30.0%
TTTGTATCTTGTCACAGAAT+TGG - chr4_1:65850230-65850249 None:intergenic 30.0%
CAAGATACAAAATCAGGATA+TGG + chr4_1:65850239-65850258 Msa0565010:CDS 30.0%
GTTATCATAGTTATCGATGT+GGG - chr4_1:65850299-65850318 None:intergenic 30.0%
AGTTATCATAGTTATCGATG+TGG - chr4_1:65850300-65850319 None:intergenic 30.0%
TTTGCTTCAGTTGAAGATGT+TGG - chr4_1:65847080-65847099 None:intergenic 35.0%
CAATTGAAAGACACGAAAAC+AGG - chr4_1:65847179-65847198 None:intergenic 35.0%
! CTGTTTTCGTGTCTTTCAAT+TGG + chr4_1:65847177-65847196 Msa0565010:CDS 35.0%
AAAGCTACAGAATTTGGAAG+AGG + chr4_1:65847313-65847332 Msa0565010:CDS 35.0%
AAGCTACAGAATTTGGAAGA+GGG + chr4_1:65847314-65847333 Msa0565010:CDS 35.0%
! TGTTGAAGACAGTGTTTCTA+AGG - chr4_1:65847372-65847391 None:intergenic 35.0%
ATCATTATGTGTAAGCGGTT+TGG + chr4_1:65847394-65847413 Msa0565010:CDS 35.0%
! TGTAAGCGGTTTGGATAATT+TGG + chr4_1:65847403-65847422 Msa0565010:CDS 35.0%
CTCAAGAATTCATGATGAAC+CGG + chr4_1:65847468-65847487 Msa0565010:CDS 35.0%
! CTTTTCCTCACTAACCAATT+TGG - chr4_1:65847579-65847598 None:intergenic 35.0%
TTTCTTCTTCTTCCTCTTCT+TGG - chr4_1:65847658-65847677 None:intergenic 35.0%
AATATTTCAGCTAAGGGTTG+TGG + chr4_1:65847707-65847726 Msa0565010:CDS 35.0%
GTTCTTACCTTCTTTATGGA+TGG - chr4_1:65847881-65847900 None:intergenic 35.0%
CATGGTTCTTACCTTCTTTA+TGG - chr4_1:65847885-65847904 None:intergenic 35.0%
! ATGCACTATCGACTATTGAA+AGG - chr4_1:65848079-65848098 None:intergenic 35.0%
CATAAAAGCAAATCAAGCTC+CGG + chr4_1:65848183-65848202 Msa0565010:CDS 35.0%
TGCATGAGGCAAGAAAAAAA+TGG + chr4_1:65848223-65848242 Msa0565010:CDS 35.0%
! AAGAGGTATAATGCTTACTC+TGG + chr4_1:65848258-65848277 Msa0565010:CDS 35.0%
GTGAACTTAGTCAGATAAGT+AGG + chr4_1:65848280-65848299 Msa0565010:CDS 35.0%
AAATTGAAATTCCCAAGCCA+AGG + chr4_1:65848399-65848418 Msa0565010:CDS 35.0%
CTTGAAAACTTTCATGACCT+TGG - chr4_1:65848419-65848438 None:intergenic 35.0%
!! AGGTCATGAAAGTTTTCAAG+AGG + chr4_1:65848419-65848438 Msa0565010:CDS 35.0%
AGGAACCTTTCAATGGAAAT+TGG + chr4_1:65848477-65848496 Msa0565010:CDS 35.0%
!! GTTGTAGTTGATGATGGTTT+AGG + chr4_1:65848576-65848595 Msa0565010:CDS 35.0%
CACAATCACATGCTGTTAAA+AGG + chr4_1:65848730-65848749 Msa0565010:CDS 35.0%
TCACATGCTGTTAAAAGGAT+AGG + chr4_1:65848735-65848754 Msa0565010:CDS 35.0%
!!! CTCTAAGATTTTGAATGCTG+AGG - chr4_1:65848949-65848968 None:intergenic 35.0%
AAATCTTAGAGATGGAACTC+TGG + chr4_1:65848958-65848977 Msa0565010:intron 35.0%
CTATATTCTTTCAGGCTTGT+GGG + chr4_1:65848997-65849016 Msa0565010:intron 35.0%
! CAAAGCTTCTTTTGGACTAA+TGG + chr4_1:65849238-65849257 Msa0565010:intron 35.0%
GTTGCATACTTCCTATTTCA+TGG - chr4_1:65849630-65849649 None:intergenic 35.0%
AGCAAATTTCAGTGTTTAGG+AGG + chr4_1:65849668-65849687 Msa0565010:intron 35.0%
GCAAATTTCAGTGTTTAGGA+GGG + chr4_1:65849669-65849688 Msa0565010:intron 35.0%
TCTTCTCGTATAAGACTAGT+TGG - chr4_1:65849828-65849847 None:intergenic 35.0%
!! CTAGTCTTATACGAGAAGAA+TGG + chr4_1:65849829-65849848 Msa0565010:intron 35.0%
AGGTAATCAAAATCAGACTC+TGG + chr4_1:65849979-65849998 Msa0565010:intron 35.0%
TACCATTAGCATTACCAAGA+AGG - chr4_1:65850122-65850141 None:intergenic 35.0%
ATGCTAATGGTAATCCTTTG+AGG + chr4_1:65850130-65850149 Msa0565010:CDS 35.0%
CTGTGACAAGATACAAAATC+AGG + chr4_1:65850233-65850252 Msa0565010:CDS 35.0%
CGAAAACAGGTTCTGTTACT+TGG - chr4_1:65847166-65847185 None:intergenic 40.0%
TTTCTTGGAGCATGTTGATG+AGG - chr4_1:65847527-65847546 None:intergenic 40.0%
ACAACAACCTAGCACCAAAT+TGG + chr4_1:65847562-65847581 Msa0565010:CDS 40.0%
!! TCACTAACCAATTTGGTGCT+AGG - chr4_1:65847572-65847591 None:intergenic 40.0%
TAGCACCAAATTGGTTAGTG+AGG + chr4_1:65847571-65847590 Msa0565010:CDS 40.0%
!! TCTTGGTATTGACACGTGTA+TGG - chr4_1:65847641-65847660 None:intergenic 40.0%
TCCAATGCCTGACACAAAAA+TGG + chr4_1:65847775-65847794 Msa0565010:CDS 40.0%
!! TCCATTTTTGTGTCAGGCAT+TGG - chr4_1:65847779-65847798 None:intergenic 40.0%
!! TGGTTCTCCATTTTTGTGTC+AGG - chr4_1:65847785-65847804 None:intergenic 40.0%
! GTTAGGCTTTTCAACCTCAT+AGG - chr4_1:65847825-65847844 None:intergenic 40.0%
ATCAGGTCCATCCATAAAGA+AGG + chr4_1:65847871-65847890 Msa0565010:intron 40.0%
CACTCAGTGTTGTCAAATAG+CGG + chr4_1:65847939-65847958 Msa0565010:intron 40.0%
CAAGTAAGAATCTTTCCTGC+AGG + chr4_1:65848146-65848165 Msa0565010:intron 40.0%
TTTCTTGCCTCATGCATATC+TGG - chr4_1:65848219-65848238 None:intergenic 40.0%
AATGGACGAGTGAATCAAAG+AGG + chr4_1:65848241-65848260 Msa0565010:CDS 40.0%
GTAGGATCTCTTCATTTCGT+CGG + chr4_1:65848298-65848317 Msa0565010:CDS 40.0%
AACTTTCATGACCTTGGCTT+GGG - chr4_1:65848413-65848432 None:intergenic 40.0%
AAACTTTCATGACCTTGGCT+TGG - chr4_1:65848414-65848433 None:intergenic 40.0%
CTTGGCCAATTTCCATTGAA+AGG - chr4_1:65848485-65848504 None:intergenic 40.0%
GTGCAAAGCTCATTTGACAA+AGG + chr4_1:65848525-65848544 Msa0565010:CDS 40.0%
CCACAAGCCTGAAAGAATAT+AGG - chr4_1:65848999-65849018 None:intergenic 40.0%
CCTATATTCTTTCAGGCTTG+TGG + chr4_1:65848996-65849015 Msa0565010:intron 40.0%
AGGCTTGTGGGACTAAATAT+TGG + chr4_1:65849009-65849028 Msa0565010:intron 40.0%
TCTTAAAATTGAGCCCTGAC+AGG + chr4_1:65849138-65849157 Msa0565010:intron 40.0%
TGCTAGTGACAACTTGAAGT+AGG - chr4_1:65849652-65849671 None:intergenic 40.0%
! CTCGTATAAGACTAGTTGGA+GGG - chr4_1:65849824-65849843 None:intergenic 40.0%
! TCTCGTATAAGACTAGTTGG+AGG - chr4_1:65849825-65849844 None:intergenic 40.0%
! TGAACCAACCAGTTCAAGTT+CGG + chr4_1:65850006-65850025 Msa0565010:intron 40.0%
GATGATCTTCAAGACCTTCT+TGG + chr4_1:65850105-65850124 Msa0565010:CDS 40.0%
!! GACCTTCTTGGTAATGCTAA+TGG + chr4_1:65850117-65850136 Msa0565010:CDS 40.0%
! TCCTTTGAGGATTGTAGTGT+TGG + chr4_1:65850143-65850162 Msa0565010:CDS 40.0%
TCCAACACTACAATCCTCAA+AGG - chr4_1:65850147-65850166 None:intergenic 40.0%
TTGGTCCAAGATCCTTGTTA+TGG + chr4_1:65850204-65850223 Msa0565010:CDS 40.0%
ATTGGCCATAACAAGGATCT+TGG - chr4_1:65850212-65850231 None:intergenic 40.0%
TCACAGAATTGGCCATAACA+AGG - chr4_1:65850219-65850238 None:intergenic 40.0%
TAGTTATCGATGTGGGACTT+AGG - chr4_1:65850292-65850311 None:intergenic 40.0%
! TTCAATTGGGAGCATATCCC+TGG + chr4_1:65847191-65847210 Msa0565010:CDS 45.0%
CCTTTGCTGCAGGTAAAAAC+CGG - chr4_1:65847490-65847509 None:intergenic 45.0%
AAAGTCATAGCCTTTGCTGC+AGG - chr4_1:65847500-65847519 None:intergenic 45.0%
CACGTGTCAATACCAAGAAG+AGG + chr4_1:65847643-65847662 Msa0565010:CDS 45.0%
TGGAGAACCAAATTCCCATG+TGG + chr4_1:65847795-65847814 Msa0565010:CDS 45.0%
AGGAAGACCACATGGGAATT+TGG - chr4_1:65847805-65847824 None:intergenic 45.0%
ACCTCATAGGAAGACCACAT+GGG - chr4_1:65847812-65847831 None:intergenic 45.0%
AACCTCATAGGAAGACCACA+TGG - chr4_1:65847813-65847832 None:intergenic 45.0%
AAGAATCTTTCCTGCAGGCT+TGG + chr4_1:65848151-65848170 Msa0565010:intron 45.0%
AGAATCTTTCCTGCAGGCTT+GGG + chr4_1:65848152-65848171 Msa0565010:intron 45.0%
! CTCATGCATATCTGGTGATG+AGG - chr4_1:65848211-65848230 None:intergenic 45.0%
CTCATCACCAGATATGCATG+AGG + chr4_1:65848209-65848228 Msa0565010:CDS 45.0%
ATCTCTTCATTTCGTCGGTC+AGG + chr4_1:65848303-65848322 Msa0565010:CDS 45.0%
!! GCGTATCTTCTTTTCGAGGT+AGG + chr4_1:65848343-65848362 Msa0565010:CDS 45.0%
TTATTCTCGGCCTGAGATTG+AGG - chr4_1:65848369-65848388 None:intergenic 45.0%
GTTGCAAGGACATGGATTCT+TGG - chr4_1:65848503-65848522 None:intergenic 45.0%
TTGCACAAGTTGCAAGGACA+TGG - chr4_1:65848511-65848530 None:intergenic 45.0%
TGAGCTTTGCACAAGTTGCA+AGG - chr4_1:65848517-65848536 None:intergenic 45.0%
! TGTTCCTCGACTCGAATACA+CGG - chr4_1:65848712-65848731 None:intergenic 45.0%
AGCATCCAGCTATAGCAAGT+GGG + chr4_1:65848767-65848786 Msa0565010:CDS 45.0%
!! TGTTTCCCACTTGCTATAGC+TGG - chr4_1:65848775-65848794 None:intergenic 45.0%
! AAAATGGTGTCAGCCTGTCA+GGG - chr4_1:65849154-65849173 None:intergenic 45.0%
! AAAAATGGTGTCAGCCTGTC+AGG - chr4_1:65849155-65849174 None:intergenic 45.0%
CTTCGAATGCTGTGCATTTC+AGG + chr4_1:65849487-65849506 Msa0565010:intron 45.0%
! GTATAAGACTAGTTGGAGGG+TGG - chr4_1:65849821-65849840 None:intergenic 45.0%
ACTTTGGTCCGAACTTGAAC+TGG - chr4_1:65850017-65850036 None:intergenic 45.0%
! GTTCAAGTTCGGACCAAAGT+TGG + chr4_1:65850017-65850036 Msa0565010:intron 45.0%
! ATGGATTACCGGTCCAACTT+TGG - chr4_1:65850033-65850052 None:intergenic 45.0%
GAGCGTCTCACAGACATAAG+AGG - chr4_1:65847047-65847066 None:intergenic 50.0%
! CCGGTTTTTACCTGCAGCAA+AGG + chr4_1:65847487-65847506 Msa0565010:CDS 50.0%
TCCCATGTGGTCTTCCTATG+AGG + chr4_1:65847808-65847827 Msa0565010:CDS 50.0%
! CATATCTGGTGATGAGGCTC+CGG - chr4_1:65848205-65848224 None:intergenic 50.0%
! GCTGGCGTATCTTCTTTTCG+AGG + chr4_1:65848339-65848358 Msa0565010:CDS 50.0%
! TTTCAAGAGGCGCAGTCACA+AGG + chr4_1:65848432-65848451 Msa0565010:CDS 50.0%
AAGGTGACTTTGGCAGTGGT+GGG - chr4_1:65848638-65848657 None:intergenic 50.0%
TCAGAAGGTGACTTTGGCAG+TGG - chr4_1:65848642-65848661 None:intergenic 50.0%
CACGACTCAGAAGGTGACTT+TGG - chr4_1:65848648-65848667 None:intergenic 50.0%
CAAAGTCACCTTCTGAGTCG+TGG + chr4_1:65848646-65848665 Msa0565010:CDS 50.0%
GAGCATCCAGCTATAGCAAG+TGG + chr4_1:65848766-65848785 Msa0565010:CDS 50.0%
TTTCAGTGTTTAGGAGGGCG+AGG + chr4_1:65849674-65849693 Msa0565010:intron 50.0%
GAGGGTGGTCATGCTAAGAT+AGG - chr4_1:65849806-65849825 None:intergenic 50.0%
TGGTCCGAACTTGAACTGGT+TGG - chr4_1:65850013-65850032 None:intergenic 50.0%
AGTTCGGACCAAAGTTGGAC+CGG + chr4_1:65850022-65850041 Msa0565010:intron 50.0%
!!! GGGGGAGTGTTTTTGCAGTT+TGG + chr4_1:65850185-65850204 Msa0565010:CDS 50.0%
GAATAGCATCCCAAGCCTGC+AGG - chr4_1:65848164-65848183 None:intergenic 55.0%
TCGAGGTAGGCCTCAATCTC+AGG + chr4_1:65848356-65848375 Msa0565010:CDS 55.0%
! TTGGCAGTGGTGGGGAAAGA+AGG - chr4_1:65848629-65848648 None:intergenic 55.0%
AGGTGACTTTGGCAGTGGTG+GGG - chr4_1:65848637-65848656 None:intergenic 55.0%
GAAGGTGACTTTGGCAGTGG+TGG - chr4_1:65848639-65848658 None:intergenic 55.0%
CGACAAAGCCACGACTCAGA+AGG - chr4_1:65848657-65848676 None:intergenic 55.0%
CAGTCCGTGTATTCGAGTCG+AGG + chr4_1:65848705-65848724 Msa0565010:CDS 55.0%
! GTAGTGTTGGAGCGCGTGCT+TGG + chr4_1:65850156-65850175 Msa0565010:CDS 60.0%
TGTTGGAGCGCGTGCTTGGT+TGG + chr4_1:65850160-65850179 Msa0565010:CDS 60.0%
GTTGGAGCGCGTGCTTGGTT+GGG + chr4_1:65850161-65850180 Msa0565010:CDS 60.0%
TCAGGAGCTGCTGCTGCTGC+TGG + chr4_1:65848321-65848340 Msa0565010:CDS 65.0%
GAGCGCGTGCTTGGTTGGGT+GGG + chr4_1:65850165-65850184 Msa0565010:CDS 65.0%
AGCGCGTGCTTGGTTGGGTG+GGG + chr4_1:65850166-65850185 Msa0565010:CDS 65.0%
GGAGCGCGTGCTTGGTTGGG+TGG + chr4_1:65850164-65850183 Msa0565010:CDS 70.0%
GCGCGTGCTTGGTTGGGTGG+GGG + chr4_1:65850167-65850186 Msa0565010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65847011 65850430 65847011 ID=Msa0565010;Name=Msa0565010
chr4_1 mRNA 65847011 65850430 65847011 ID=Msa0565010-mRNA-1;Parent=Msa0565010;Name=Msa0565010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.33|0.5|1|1|1|4|137|578
chr4_1 exon 65847011 65847829 65847011 ID=Msa0565010-mRNA-1:exon:21257;Parent=Msa0565010-mRNA-1
chr4_1 exon 65848168 65848842 65848168 ID=Msa0565010-mRNA-1:exon:21258;Parent=Msa0565010-mRNA-1
chr4_1 exon 65849011 65849053 65849011 ID=Msa0565010-mRNA-1:exon:21259;Parent=Msa0565010-mRNA-1
chr4_1 exon 65850094 65850430 65850094 ID=Msa0565010-mRNA-1:exon:21260;Parent=Msa0565010-mRNA-1
chr4_1 CDS 65847011 65847829 65847011 ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1 CDS 65848168 65848842 65848168 ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1 CDS 65849011 65849053 65849011 ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1 CDS 65850094 65850293 65850094 ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1
chr4_1 three_prime_UTR 65850294 65850430 65850294 ID=Msa0565010-mRNA-1:three_prime_utr;Parent=Msa0565010-mRNA-1
Gene Sequence

>Msa0565010

ATGATGAATGAAGGGAAATTGAATATTAATGCTCCTCTTATGTCTGTGAGACGCTCTATTTGTACACCAACATCTTCAACTGAAGCAAAGATCAAGATATTAGATAATTCAGCACATTCTCTTCAATACAATAAATCAGACATGACTCAAGACCAAGTAACAGAACCTGTTTTCGTGTCTTTCAATTGGGAGCATATCCCTGGTAAATCTAAACTTGATAACAAGGTTAGGTCCTCAAGTAAATCGAATTCTTTAAGTGACATTATGAATAAAGTAGATCATGACAAAGGACAAAACAATGAAAAGCTACAGAATTTGGAAGAGGGTGACGACGACGACGATGATGCTTTTTCAGATGCCTTAGAAACACTGTCTTCAACAGAATCATTATGTGTAAGCGGTTTGGATAATTTGGATGCAAACAAGTGTAGAATCTCTTCTACTGATGATAAACAAGCTCAAGAATTCATGATGAACCGGTTTTTACCTGCAGCAAAGGCTATGACTTTACAACCTCATCAACATGCTCCAAGAAAACAATCTGTTCTGTTACAACAACCTAGCACCAAATTGGTTAGTGAGGAAAAGAACTCTTTTGTTAACAATAGAAATATCACTGACATTGTACCATACACGTGTCAATACCAAGAAGAGGAAGAAGAAGAAAGTGATCATGATGAAACTGATGATTATGCAAATATTTCAGCTAAGGGTTGTGGATTATTTCCTAGTTCATGCATTAAGAATTCATTGTGTTTATTAAATCCAATGCCTGACACAAAAATGGAGAACCAAATTCCCATGTGGTCTTCCTATGAGGCTTGGGATGCTATTCATAAAAGCAAATCAAGCTCCGGAGCCTCATCACCAGATATGCATGAGGCAAGAAAAAAATGGACGAGTGAATCAAAGAGGTATAATGCTTACTCTGGTGAACTTAGTCAGATAAGTAGGATCTCTTCATTTCGTCGGTCAGGAGCTGCTGCTGCTGCTGGCGTATCTTCTTTTCGAGGTAGGCCTCAATCTCAGGCCGAGAATAACCAAATTAGAAAATTGAAATTCCCAAGCCAAGGTCATGAAAGTTTTCAAGAGGCGCAGTCACAAGGATCCAAAAGAAGTTCAAATTCAAGGAACCTTTCAATGGAAATTGGCCAAGAATCCATGTCCTTGCAACTTGTGCAAAGCTCATTTGACAAAGGTACAAAGTTTAACAACAACAAGCAAATTGTTGTAGTTGATGATGGTTTAGGAAAAAGTGATGCTAAAAGTGTTATGCACCTTCTTTCCCCACCACTGCCAAAGTCACCTTCTGAGTCGTGGCTTTGTCGTGCATTGCCTTTAGTTTCTTTGAAGAATCAGTCCGTGTATTCGAGTCGAGGAACACAATCACATGCTGTTAAAAGGATAGGATATAGTAGAGCATCCAGCTATAGCAAGTGGGAAACAATAGTGAAAACTTCAAATTTGCATCATGATCATGATTTCTGTTCTAAGGCTTGTGGGACTAAATATTGGTTTGTTTTGCATGATATCATAGAAGAGAAGTCTGATGATCTTCAAGACCTTCTTGGTAATGCTAATGGTAATCCTTTGAGGATTGTAGTGTTGGAGCGCGTGCTTGGTTGGGTGGGGGAGTGTTTTTGCAGTTTGGTCCAAGATCCTTGTTATGGCCAATTCTGTGACAAGATACAAAATCAGGATATGGAGACATGTACAAAAAGAATGACAGTGTCCTAA

Protein sequence

>Msa0565010

MMNEGKLNINAPLMSVRRSICTPTSSTEAKIKILDNSAHSLQYNKSDMTQDQVTEPVFVSFNWEHIPGKSKLDNKVRSSSKSNSLSDIMNKVDHDKGQNNEKLQNLEEGDDDDDDAFSDALETLSSTESLCVSGLDNLDANKCRISSTDDKQAQEFMMNRFLPAAKAMTLQPHQHAPRKQSVLLQQPSTKLVSEEKNSFVNNRNITDIVPYTCQYQEEEEEESDHDETDDYANISAKGCGLFPSSCIKNSLCLLNPMPDTKMENQIPMWSSYEAWDAIHKSKSSSGASSPDMHEARKKWTSESKRYNAYSGELSQISRISSFRRSGAAAAAGVSSFRGRPQSQAENNQIRKLKFPSQGHESFQEAQSQGSKRSSNSRNLSMEIGQESMSLQLVQSSFDKGTKFNNNKQIVVVDDGLGKSDAKSVMHLLSPPLPKSPSESWLCRALPLVSLKNQSVYSSRGTQSHAVKRIGYSRASSYSKWETIVKTSNLHHDHDFCSKACGTKYWFVLHDIIEEKSDDLQDLLGNANGNPLRIVVLERVLGWVGECFCSLVQDPCYGQFCDKIQNQDMETCTKRMTVS*