Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565010 | AET04255.2 | 87.619 | 525 | 36 | 5 | 1 | 502 | 1 | 519 | 0.0 | 850 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565010 | G7LJF0 | 87.619 | 525 | 36 | 5 | 1 | 502 | 1 | 519 | 0.0 | 850 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0565010 | Msa0701210 | 0.814806 | 1.276924e-51 | -8.615850e-47 |
Msa0565010 | Msa1174220 | 0.820792 | 5.688273e-53 | -8.615850e-47 |
Msa0565010 | Msa1460890 | 0.807808 | 4.218449e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565010 | MtrunA17_Chr8g0379141 | 87.716 | 521 | 35 | 5 | 1 | 498 | 1 | 515 | 0.0 | 843 |
Msa0565010 | MtrunA17_Chr2g0283911 | 41.929 | 477 | 169 | 16 | 2 | 382 | 1 | 465 | 1.62e-79 | 264 |
Msa0565010 | MtrunA17_Chr2g0283911 | 51.351 | 111 | 41 | 3 | 383 | 493 | 568 | 665 | 1.61e-19 | 92.8 |
Msa0565010 | MtrunA17_Chr4g0041221 | 31.250 | 320 | 159 | 10 | 1 | 266 | 107 | 419 | 2.04e-27 | 117 |
Msa0565010 | MtrunA17_Chr2g0325871 | 32.509 | 283 | 155 | 12 | 1 | 266 | 6 | 269 | 1.14e-21 | 97.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565010 | AT1G29240.1 | 27.891 | 588 | 300 | 20 | 2 | 493 | 1 | 560 | 1.09e-34 | 139 |
Msa0565010 | AT5G45850.1 | 27.390 | 544 | 226 | 22 | 2 | 493 | 1 | 427 | 3.77e-26 | 112 |
Msa0565010 | AT2G30990.3 | 31.541 | 279 | 160 | 10 | 1 | 265 | 7 | 268 | 1.55e-24 | 108 |
Msa0565010 | AT2G30990.4 | 29.967 | 307 | 158 | 11 | 1 | 265 | 7 | 298 | 3.91e-24 | 107 |
Msa0565010 | AT2G30990.1 | 29.967 | 307 | 158 | 11 | 1 | 265 | 7 | 298 | 3.91e-24 | 107 |
Msa0565010 | AT2G30990.5 | 29.967 | 307 | 158 | 11 | 1 | 265 | 7 | 298 | 3.91e-24 | 107 |
Msa0565010 | AT2G30990.2 | 29.967 | 307 | 158 | 11 | 1 | 265 | 7 | 298 | 3.91e-24 | 107 |
Msa0565010 | AT4G18630.1 | 25.232 | 539 | 279 | 20 | 2 | 493 | 1 | 462 | 1.31e-18 | 89.4 |
Msa0565010 | AT2G34170.4 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Msa0565010 | AT2G34170.6 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Msa0565010 | AT2G34170.2 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Msa0565010 | AT2G34170.1 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Msa0565010 | AT2G34170.5 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Msa0565010 | AT2G34170.3 | 28.539 | 445 | 234 | 17 | 116 | 493 | 79 | 506 | 1.58e-13 | 73.6 |
Find 111 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGAATTTGAACTTCTTT+TGG | 0.115235 | 4_1:-65848457 | None:intergenic |
TTTCTTCTTCTTCCTCTTCT+TGG | 0.145703 | 4_1:-65847655 | None:intergenic |
TGTAAGCGGTTTGGATAATT+TGG | 0.219338 | 4_1:+65847403 | Msa0565010:CDS |
CAATGAAAAGCTACAGAATT+TGG | 0.225414 | 4_1:+65847307 | Msa0565010:CDS |
TTTCTTGCCTCATGCATATC+TGG | 0.234829 | 4_1:-65848216 | None:intergenic |
CACAATCACATGCTGTTAAA+AGG | 0.240194 | 4_1:+65848730 | Msa0565010:CDS |
AGGAACCTTTCAATGGAAAT+TGG | 0.242168 | 4_1:+65848477 | Msa0565010:CDS |
AGGAAGACCACATGGGAATT+TGG | 0.262676 | 4_1:-65847802 | None:intergenic |
TGATCATGATTTCTGTTCTA+AGG | 0.272741 | 4_1:+65848821 | Msa0565010:CDS |
GATGATCTTCAAGACCTTCT+TGG | 0.282619 | 4_1:+65850105 | Msa0565010:CDS |
TGTTGAAGACAGTGTTTCTA+AGG | 0.291639 | 4_1:-65847369 | None:intergenic |
ACAACAACCTAGCACCAAAT+TGG | 0.300860 | 4_1:+65847562 | Msa0565010:CDS |
AGGCTTGTGGGACTAAATAT+TGG | 0.310247 | 4_1:+65849009 | Msa0565010:intron |
CGAAAACAGGTTCTGTTACT+TGG | 0.317824 | 4_1:-65847163 | None:intergenic |
TCAGGAGCTGCTGCTGCTGC+TGG | 0.322511 | 4_1:+65848321 | Msa0565010:CDS |
TTTGTATCTTGTCACAGAAT+TGG | 0.338239 | 4_1:-65850227 | None:intergenic |
AACTTTCATGACCTTGGCTT+GGG | 0.359161 | 4_1:-65848410 | None:intergenic |
AGCGCGTGCTTGGTTGGGTG+GGG | 0.365811 | 4_1:+65850166 | Msa0565010:CDS |
CTATATTCTTTCAGGCTTGT+GGG | 0.366361 | 4_1:+65848997 | Msa0565010:intron |
CCTATATTCTTTCAGGCTTG+TGG | 0.371093 | 4_1:+65848996 | Msa0565010:intron |
TGTTTCCCACTTGCTATAGC+TGG | 0.374061 | 4_1:-65848772 | None:intergenic |
GTTGCAAGGACATGGATTCT+TGG | 0.383545 | 4_1:-65848500 | None:intergenic |
ATCATTATGTGTAAGCGGTT+TGG | 0.386450 | 4_1:+65847394 | Msa0565010:CDS |
GACCTTCTTGGTAATGCTAA+TGG | 0.391443 | 4_1:+65850117 | Msa0565010:CDS |
TCGAGGTAGGCCTCAATCTC+AGG | 0.393361 | 4_1:+65848356 | Msa0565010:CDS |
TGTTGGAGCGCGTGCTTGGT+TGG | 0.402308 | 4_1:+65850160 | Msa0565010:CDS |
CTCAAGAATTCATGATGAAC+CGG | 0.406764 | 4_1:+65847468 | Msa0565010:CDS |
ATCTCTTCATTTCGTCGGTC+AGG | 0.413475 | 4_1:+65848303 | Msa0565010:CDS |
GAGCGCGTGCTTGGTTGGGT+GGG | 0.420886 | 4_1:+65850165 | Msa0565010:CDS |
TTGGTCCAAGATCCTTGTTA+TGG | 0.421854 | 4_1:+65850204 | Msa0565010:CDS |
TCCCATGTGGTCTTCCTATG+AGG | 0.424888 | 4_1:+65847808 | Msa0565010:CDS |
AAATTCAAGGAACCTTTCAA+TGG | 0.425265 | 4_1:+65848470 | Msa0565010:CDS |
AATATTTCAGCTAAGGGTTG+TGG | 0.425504 | 4_1:+65847707 | Msa0565010:CDS |
TCCTTTGAGGATTGTAGTGT+TGG | 0.426435 | 4_1:+65850143 | Msa0565010:CDS |
CTTGAAAACTTTCATGACCT+TGG | 0.430428 | 4_1:-65848416 | None:intergenic |
GTTGTAGTTGATGATGGTTT+AGG | 0.433631 | 4_1:+65848576 | Msa0565010:CDS |
CAAGATACAAAATCAGGATA+TGG | 0.442865 | 4_1:+65850239 | Msa0565010:CDS |
CTAAACTTGATAACAAGGTT+AGG | 0.446055 | 4_1:+65847219 | Msa0565010:CDS |
ATGCTAATGGTAATCCTTTG+AGG | 0.451428 | 4_1:+65850130 | Msa0565010:CDS |
ATTGGCCATAACAAGGATCT+TGG | 0.451471 | 4_1:-65850209 | None:intergenic |
TCTTGGTATTGACACGTGTA+TGG | 0.453421 | 4_1:-65847638 | None:intergenic |
AAACTTTCATGACCTTGGCT+TGG | 0.457228 | 4_1:-65848411 | None:intergenic |
CCAAAAGAAGTTCAAATTCA+AGG | 0.459922 | 4_1:+65848457 | Msa0565010:CDS |
CTTGGCCAATTTCCATTGAA+AGG | 0.462261 | 4_1:-65848482 | None:intergenic |
CTGTGACAAGATACAAAATC+AGG | 0.462389 | 4_1:+65850233 | Msa0565010:CDS |
TCACTAACCAATTTGGTGCT+AGG | 0.464499 | 4_1:-65847569 | None:intergenic |
GTTGGAGCGCGTGCTTGGTT+GGG | 0.468309 | 4_1:+65850161 | Msa0565010:CDS |
GAAGGTGACTTTGGCAGTGG+TGG | 0.472083 | 4_1:-65848636 | None:intergenic |
GTAGTGTTGGAGCGCGTGCT+TGG | 0.475481 | 4_1:+65850156 | Msa0565010:CDS |
TTGCACAAGTTGCAAGGACA+TGG | 0.478353 | 4_1:-65848508 | None:intergenic |
CAAATTGTTGTAGTTGATGA+TGG | 0.479110 | 4_1:+65848570 | Msa0565010:CDS |
CAATTGAAAGACACGAAAAC+AGG | 0.484249 | 4_1:-65847176 | None:intergenic |
TTGGCAGTGGTGGGGAAAGA+AGG | 0.486436 | 4_1:-65848626 | None:intergenic |
TTATTCTCGGCCTGAGATTG+AGG | 0.486901 | 4_1:-65848366 | None:intergenic |
GGAGCGCGTGCTTGGTTGGG+TGG | 0.486901 | 4_1:+65850164 | Msa0565010:CDS |
GCGCGTGCTTGGTTGGGTGG+GGG | 0.488762 | 4_1:+65850167 | Msa0565010:CDS |
TTCAATTGGGAGCATATCCC+TGG | 0.489660 | 4_1:+65847191 | Msa0565010:CDS |
GAGCGTCTCACAGACATAAG+AGG | 0.491919 | 4_1:-65847044 | None:intergenic |
TATGCAAATATTTCAGCTAA+GGG | 0.492036 | 4_1:+65847701 | Msa0565010:CDS |
TTTGCTTCAGTTGAAGATGT+TGG | 0.500023 | 4_1:-65847077 | None:intergenic |
TACCATTAGCATTACCAAGA+AGG | 0.500761 | 4_1:-65850119 | None:intergenic |
TTATGCAAATATTTCAGCTA+AGG | 0.504055 | 4_1:+65847700 | Msa0565010:CDS |
GTGAACTTAGTCAGATAAGT+AGG | 0.505305 | 4_1:+65848280 | Msa0565010:CDS |
CACGACTCAGAAGGTGACTT+TGG | 0.507091 | 4_1:-65848645 | None:intergenic |
TAGTTATCGATGTGGGACTT+AGG | 0.510078 | 4_1:-65850289 | None:intergenic |
CATATCTGGTGATGAGGCTC+CGG | 0.516580 | 4_1:-65848202 | None:intergenic |
TTATCAAGTTTAGATTTACC+AGG | 0.517411 | 4_1:-65847209 | None:intergenic |
CATAAAAGCAAATCAAGCTC+CGG | 0.529187 | 4_1:+65848183 | Msa0565010:CDS |
GAATTCTTAATGCATGAACT+AGG | 0.530027 | 4_1:-65847737 | None:intergenic |
AAAGTCATAGCCTTTGCTGC+AGG | 0.531670 | 4_1:-65847497 | None:intergenic |
AAGGTGACTTTGGCAGTGGT+GGG | 0.542375 | 4_1:-65848635 | None:intergenic |
TAAAGAATTCGATTTACTTG+AGG | 0.545338 | 4_1:-65847243 | None:intergenic |
TCACATGCTGTTAAAAGGAT+AGG | 0.546488 | 4_1:+65848735 | Msa0565010:CDS |
TAGGGAGGAGAACGTAAGAA+AGG | 0.547308 | 4_1:-65850414 | None:intergenic |
TGGAACATAATGATGAATGA+AGG | 0.554781 | 4_1:+65847002 | None:intergenic |
GAGCATCCAGCTATAGCAAG+TGG | 0.557921 | 4_1:+65848766 | Msa0565010:CDS |
TTTCAAGAGGCGCAGTCACA+AGG | 0.562045 | 4_1:+65848432 | Msa0565010:CDS |
GTAGGATCTCTTCATTTCGT+CGG | 0.565108 | 4_1:+65848298 | Msa0565010:CDS |
TGATTCTTCAAAGAAACTAA+AGG | 0.565821 | 4_1:-65848684 | None:intergenic |
AAAGCTACAGAATTTGGAAG+AGG | 0.565842 | 4_1:+65847313 | Msa0565010:CDS |
TGAGCTTTGCACAAGTTGCA+AGG | 0.572711 | 4_1:-65848514 | None:intergenic |
ACAGAATCATTATGTGTAAG+CGG | 0.580192 | 4_1:+65847389 | Msa0565010:CDS |
AAGAGGTATAATGCTTACTC+TGG | 0.580329 | 4_1:+65848258 | Msa0565010:CDS |
CAAAGTCACCTTCTGAGTCG+TGG | 0.581092 | 4_1:+65848646 | Msa0565010:CDS |
ATCGATAACTATGATAACTA+CGG | 0.583059 | 4_1:+65850301 | Msa0565010:three_prime_UTR |
TCAGAAGGTGACTTTGGCAG+TGG | 0.585919 | 4_1:-65848639 | None:intergenic |
GTTATCATAGTTATCGATGT+GGG | 0.590069 | 4_1:-65850296 | None:intergenic |
CTCATGCATATCTGGTGATG+AGG | 0.593781 | 4_1:-65848208 | None:intergenic |
GGAACATAATGATGAATGAA+GGG | 0.600386 | 4_1:+65847003 | None:intergenic |
TTTCTTGGAGCATGTTGATG+AGG | 0.603285 | 4_1:-65847524 | None:intergenic |
TAGCACCAAATTGGTTAGTG+AGG | 0.603329 | 4_1:+65847571 | Msa0565010:CDS |
CACGTGTCAATACCAAGAAG+AGG | 0.603427 | 4_1:+65847643 | Msa0565010:CDS |
CGACAAAGCCACGACTCAGA+AGG | 0.606984 | 4_1:-65848654 | None:intergenic |
TAAATCTAAACTTGATAACA+AGG | 0.612595 | 4_1:+65847214 | Msa0565010:CDS |
AAGCTACAGAATTTGGAAGA+GGG | 0.613004 | 4_1:+65847314 | Msa0565010:CDS |
TCACAGAATTGGCCATAACA+AGG | 0.619953 | 4_1:-65850216 | None:intergenic |
TATCAAGTTTAGATTTACCA+GGG | 0.620380 | 4_1:-65847208 | None:intergenic |
AAATTGAAATTCCCAAGCCA+AGG | 0.620852 | 4_1:+65848399 | Msa0565010:CDS |
TGTTCCTCGACTCGAATACA+CGG | 0.631344 | 4_1:-65848709 | None:intergenic |
AACCTCATAGGAAGACCACA+TGG | 0.651576 | 4_1:-65847810 | None:intergenic |
TCCAACACTACAATCCTCAA+AGG | 0.654004 | 4_1:-65850144 | None:intergenic |
AGGTGACTTTGGCAGTGGTG+GGG | 0.655340 | 4_1:-65848634 | None:intergenic |
AATAAAGTAGATCATGACAA+AGG | 0.655952 | 4_1:+65847278 | Msa0565010:CDS |
AATGGACGAGTGAATCAAAG+AGG | 0.657948 | 4_1:+65848241 | Msa0565010:CDS |
AGCATCCAGCTATAGCAAGT+GGG | 0.660589 | 4_1:+65848767 | Msa0565010:CDS |
GTGCAAAGCTCATTTGACAA+AGG | 0.661335 | 4_1:+65848525 | Msa0565010:CDS |
CAGTCCGTGTATTCGAGTCG+AGG | 0.663096 | 4_1:+65848705 | Msa0565010:CDS |
AGTTATCATAGTTATCGATG+TGG | 0.666274 | 4_1:-65850297 | None:intergenic |
CTCATCACCAGATATGCATG+AGG | 0.681013 | 4_1:+65848209 | Msa0565010:CDS |
ACCTCATAGGAAGACCACAT+GGG | 0.707126 | 4_1:-65847809 | None:intergenic |
TGGAGAACCAAATTCCCATG+TGG | 0.730190 | 4_1:+65847795 | Msa0565010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATGATTTACAAAATG+AGG | - | chr4_1:65848110-65848129 | None:intergenic | 15.0% |
!!! | CAAAGATATAAATTTTTTAC+TGG | + | chr4_1:65848886-65848905 | Msa0565010:intron | 15.0% |
!! | ATATATAGGTTACTTAAATA+TGG | - | chr4_1:65849583-65849602 | None:intergenic | 15.0% |
!!! | TAATATTTGAGATTTTATCA+AGG | + | chr4_1:65849959-65849978 | Msa0565010:intron | 15.0% |
!! | AAAAAATTATTTACTCTACT+AGG | - | chr4_1:65850378-65850397 | None:intergenic | 15.0% |
!!! | TAAATCTAAACTTGATAACA+AGG | + | chr4_1:65847214-65847233 | Msa0565010:CDS | 20.0% |
!!! | TTTTCTAATTTGGTTATTCT+CGG | - | chr4_1:65848382-65848401 | None:intergenic | 20.0% |
!!! | GGAATTTCAATTTTCTAATT+TGG | - | chr4_1:65848392-65848411 | None:intergenic | 20.0% |
!! | AACATAAAATATTAGCTCAA+TGG | - | chr4_1:65848860-65848879 | None:intergenic | 20.0% |
!! | TATATTTCCTATATTCTTTC+AGG | + | chr4_1:65848989-65849008 | Msa0565010:intron | 20.0% |
!!! | TGAAATTTTGAATACATTGA+AGG | - | chr4_1:65849266-65849285 | None:intergenic | 20.0% |
!!! | ATTAGTTTATATGTACTTCT+GGG | - | chr4_1:65849299-65849318 | None:intergenic | 20.0% |
!! | ATTTATGAAATTGCAAGAAA+AGG | - | chr4_1:65849424-65849443 | None:intergenic | 20.0% |
!!! | ATTGATCTGATTTTCATATT+TGG | - | chr4_1:65849452-65849471 | None:intergenic | 20.0% |
!!! | ATTTTAATCGCTTGTTTAAA+TGG | - | chr4_1:65849903-65849922 | None:intergenic | 20.0% |
! | TATCAAGTTTAGATTTACCA+GGG | - | chr4_1:65847211-65847230 | None:intergenic | 25.0% |
! | TTATCAAGTTTAGATTTACC+AGG | - | chr4_1:65847212-65847231 | None:intergenic | 25.0% |
! | TAAAGAATTCGATTTACTTG+AGG | - | chr4_1:65847246-65847265 | None:intergenic | 25.0% |
! | AATAAAGTAGATCATGACAA+AGG | + | chr4_1:65847278-65847297 | Msa0565010:CDS | 25.0% |
! | TTATGCAAATATTTCAGCTA+AGG | + | chr4_1:65847700-65847719 | Msa0565010:CDS | 25.0% |
! | TATGCAAATATTTCAGCTAA+GGG | + | chr4_1:65847701-65847720 | Msa0565010:CDS | 25.0% |
!! | CTAAATTGAGAACTTTTGTT+AGG | - | chr4_1:65847842-65847861 | None:intergenic | 25.0% |
!!! | CAATTTAGCTCTTATAAATC+AGG | + | chr4_1:65847854-65847873 | Msa0565010:intron | 25.0% |
! | AAATTGCTATCTTGATTGAA+CGG | + | chr4_1:65848046-65848065 | Msa0565010:intron | 25.0% |
! | TGATTCTTCAAAGAAACTAA+AGG | - | chr4_1:65848687-65848706 | None:intergenic | 25.0% |
!!! | TTTGTTTTGCATGATATCAT+AGG | + | chr4_1:65849032-65849051 | Msa0565010:CDS | 25.0% |
! | ATAGGTAACTAAATTTCTCA+TGG | + | chr4_1:65849050-65849069 | Msa0565010:intron | 25.0% |
! | GACAACAAATGTAAACATAA+TGG | - | chr4_1:65849117-65849136 | None:intergenic | 25.0% |
! | TACTGATGTATCAAGAAAAA+TGG | - | chr4_1:65849170-65849189 | None:intergenic | 25.0% |
! | AGAAGAATACATATCCTAAT+TGG | + | chr4_1:65849198-65849217 | Msa0565010:intron | 25.0% |
!! | GTTTTTATTGATCACCAATT+AGG | - | chr4_1:65849215-65849234 | None:intergenic | 25.0% |
!! | AAAACAAACAAAGCTTCTTT+TGG | + | chr4_1:65849230-65849249 | Msa0565010:intron | 25.0% |
! | TTAGTTTATATGTACTTCTG+GGG | - | chr4_1:65849298-65849317 | None:intergenic | 25.0% |
!! | CATTAGTTTATATGTACTTC+TGG | - | chr4_1:65849300-65849319 | None:intergenic | 25.0% |
! | GATTAATCTACAGCATATAT+AGG | - | chr4_1:65849597-65849616 | None:intergenic | 25.0% |
!! | CTTTTTAAATGCCATGAAAT+AGG | + | chr4_1:65849616-65849635 | Msa0565010:intron | 25.0% |
!! | TGTTAGTATCATGTTGATAA+TGG | - | chr4_1:65849712-65849731 | None:intergenic | 25.0% |
!! | GGTTATGAAGTTTCTTTTAA+CGG | - | chr4_1:65849748-65849767 | None:intergenic | 25.0% |
!!! | AGAATAAATTTGCTAGAGTA+TGG | - | chr4_1:65849769-65849788 | None:intergenic | 25.0% |
!! | TTTAAATGGTAATGCAACAA+TGG | - | chr4_1:65849889-65849908 | None:intergenic | 25.0% |
! | ATCGATAACTATGATAACTA+CGG | + | chr4_1:65850301-65850320 | Msa0565010:three_prime_UTR | 25.0% |
! | TGTTTTCGTGTCTTTCAATT+GGG | + | chr4_1:65847178-65847197 | Msa0565010:CDS | 30.0% |
! | CTAAACTTGATAACAAGGTT+AGG | + | chr4_1:65847219-65847238 | Msa0565010:CDS | 30.0% |
CAATGAAAAGCTACAGAATT+TGG | + | chr4_1:65847307-65847326 | Msa0565010:CDS | 30.0% | |
ACAGAATCATTATGTGTAAG+CGG | + | chr4_1:65847389-65847408 | Msa0565010:CDS | 30.0% | |
! | AACAGAACAGATTGTTTTCT+TGG | - | chr4_1:65847542-65847561 | None:intergenic | 30.0% |
GAATTCTTAATGCATGAACT+AGG | - | chr4_1:65847740-65847759 | None:intergenic | 30.0% | |
ATAGAAAACTCAGACTAACA+TGG | - | chr4_1:65847903-65847922 | None:intergenic | 30.0% | |
TGATTTACAAAATGAGGTCA+AGG | - | chr4_1:65848104-65848123 | None:intergenic | 30.0% | |
! | CCTTGAATTTGAACTTCTTT+TGG | - | chr4_1:65848460-65848479 | None:intergenic | 30.0% |
CCAAAAGAAGTTCAAATTCA+AGG | + | chr4_1:65848457-65848476 | Msa0565010:CDS | 30.0% | |
AAATTCAAGGAACCTTTCAA+TGG | + | chr4_1:65848470-65848489 | Msa0565010:CDS | 30.0% | |
!! | CAAATTGTTGTAGTTGATGA+TGG | + | chr4_1:65848570-65848589 | Msa0565010:CDS | 30.0% |
TGATCATGATTTCTGTTCTA+AGG | + | chr4_1:65848821-65848840 | Msa0565010:CDS | 30.0% | |
ATTAGCTCAATGGATAAATG+AGG | - | chr4_1:65848850-65848869 | None:intergenic | 30.0% | |
TGGCAATTAACTTTCATTAC+AGG | + | chr4_1:65848906-65848925 | Msa0565010:intron | 30.0% | |
TGAATGCTGAGGTTTATATA+AGG | - | chr4_1:65848938-65848957 | None:intergenic | 30.0% | |
AGCATTCAAAATCTTAGAGA+TGG | + | chr4_1:65848950-65848969 | Msa0565010:intron | 30.0% | |
TATGAAATTGCAAGAAAAGG+CGG | - | chr4_1:65849421-65849440 | None:intergenic | 30.0% | |
ACTAGCAAATTTCAGTGTTT+AGG | + | chr4_1:65849665-65849684 | Msa0565010:intron | 30.0% | |
!! | ATATCAGTTCAATGGATTAC+CGG | - | chr4_1:65850044-65850063 | None:intergenic | 30.0% |
ATATGAGCATATCAGTTCAA+TGG | - | chr4_1:65850052-65850071 | None:intergenic | 30.0% | |
TTTGTATCTTGTCACAGAAT+TGG | - | chr4_1:65850230-65850249 | None:intergenic | 30.0% | |
CAAGATACAAAATCAGGATA+TGG | + | chr4_1:65850239-65850258 | Msa0565010:CDS | 30.0% | |
GTTATCATAGTTATCGATGT+GGG | - | chr4_1:65850299-65850318 | None:intergenic | 30.0% | |
AGTTATCATAGTTATCGATG+TGG | - | chr4_1:65850300-65850319 | None:intergenic | 30.0% | |
TTTGCTTCAGTTGAAGATGT+TGG | - | chr4_1:65847080-65847099 | None:intergenic | 35.0% | |
CAATTGAAAGACACGAAAAC+AGG | - | chr4_1:65847179-65847198 | None:intergenic | 35.0% | |
! | CTGTTTTCGTGTCTTTCAAT+TGG | + | chr4_1:65847177-65847196 | Msa0565010:CDS | 35.0% |
AAAGCTACAGAATTTGGAAG+AGG | + | chr4_1:65847313-65847332 | Msa0565010:CDS | 35.0% | |
AAGCTACAGAATTTGGAAGA+GGG | + | chr4_1:65847314-65847333 | Msa0565010:CDS | 35.0% | |
! | TGTTGAAGACAGTGTTTCTA+AGG | - | chr4_1:65847372-65847391 | None:intergenic | 35.0% |
ATCATTATGTGTAAGCGGTT+TGG | + | chr4_1:65847394-65847413 | Msa0565010:CDS | 35.0% | |
! | TGTAAGCGGTTTGGATAATT+TGG | + | chr4_1:65847403-65847422 | Msa0565010:CDS | 35.0% |
CTCAAGAATTCATGATGAAC+CGG | + | chr4_1:65847468-65847487 | Msa0565010:CDS | 35.0% | |
! | CTTTTCCTCACTAACCAATT+TGG | - | chr4_1:65847579-65847598 | None:intergenic | 35.0% |
TTTCTTCTTCTTCCTCTTCT+TGG | - | chr4_1:65847658-65847677 | None:intergenic | 35.0% | |
AATATTTCAGCTAAGGGTTG+TGG | + | chr4_1:65847707-65847726 | Msa0565010:CDS | 35.0% | |
GTTCTTACCTTCTTTATGGA+TGG | - | chr4_1:65847881-65847900 | None:intergenic | 35.0% | |
CATGGTTCTTACCTTCTTTA+TGG | - | chr4_1:65847885-65847904 | None:intergenic | 35.0% | |
! | ATGCACTATCGACTATTGAA+AGG | - | chr4_1:65848079-65848098 | None:intergenic | 35.0% |
CATAAAAGCAAATCAAGCTC+CGG | + | chr4_1:65848183-65848202 | Msa0565010:CDS | 35.0% | |
TGCATGAGGCAAGAAAAAAA+TGG | + | chr4_1:65848223-65848242 | Msa0565010:CDS | 35.0% | |
! | AAGAGGTATAATGCTTACTC+TGG | + | chr4_1:65848258-65848277 | Msa0565010:CDS | 35.0% |
GTGAACTTAGTCAGATAAGT+AGG | + | chr4_1:65848280-65848299 | Msa0565010:CDS | 35.0% | |
AAATTGAAATTCCCAAGCCA+AGG | + | chr4_1:65848399-65848418 | Msa0565010:CDS | 35.0% | |
CTTGAAAACTTTCATGACCT+TGG | - | chr4_1:65848419-65848438 | None:intergenic | 35.0% | |
!! | AGGTCATGAAAGTTTTCAAG+AGG | + | chr4_1:65848419-65848438 | Msa0565010:CDS | 35.0% |
AGGAACCTTTCAATGGAAAT+TGG | + | chr4_1:65848477-65848496 | Msa0565010:CDS | 35.0% | |
!! | GTTGTAGTTGATGATGGTTT+AGG | + | chr4_1:65848576-65848595 | Msa0565010:CDS | 35.0% |
CACAATCACATGCTGTTAAA+AGG | + | chr4_1:65848730-65848749 | Msa0565010:CDS | 35.0% | |
TCACATGCTGTTAAAAGGAT+AGG | + | chr4_1:65848735-65848754 | Msa0565010:CDS | 35.0% | |
!!! | CTCTAAGATTTTGAATGCTG+AGG | - | chr4_1:65848949-65848968 | None:intergenic | 35.0% |
AAATCTTAGAGATGGAACTC+TGG | + | chr4_1:65848958-65848977 | Msa0565010:intron | 35.0% | |
CTATATTCTTTCAGGCTTGT+GGG | + | chr4_1:65848997-65849016 | Msa0565010:intron | 35.0% | |
! | CAAAGCTTCTTTTGGACTAA+TGG | + | chr4_1:65849238-65849257 | Msa0565010:intron | 35.0% |
GTTGCATACTTCCTATTTCA+TGG | - | chr4_1:65849630-65849649 | None:intergenic | 35.0% | |
AGCAAATTTCAGTGTTTAGG+AGG | + | chr4_1:65849668-65849687 | Msa0565010:intron | 35.0% | |
GCAAATTTCAGTGTTTAGGA+GGG | + | chr4_1:65849669-65849688 | Msa0565010:intron | 35.0% | |
TCTTCTCGTATAAGACTAGT+TGG | - | chr4_1:65849828-65849847 | None:intergenic | 35.0% | |
!! | CTAGTCTTATACGAGAAGAA+TGG | + | chr4_1:65849829-65849848 | Msa0565010:intron | 35.0% |
AGGTAATCAAAATCAGACTC+TGG | + | chr4_1:65849979-65849998 | Msa0565010:intron | 35.0% | |
TACCATTAGCATTACCAAGA+AGG | - | chr4_1:65850122-65850141 | None:intergenic | 35.0% | |
ATGCTAATGGTAATCCTTTG+AGG | + | chr4_1:65850130-65850149 | Msa0565010:CDS | 35.0% | |
CTGTGACAAGATACAAAATC+AGG | + | chr4_1:65850233-65850252 | Msa0565010:CDS | 35.0% | |
CGAAAACAGGTTCTGTTACT+TGG | - | chr4_1:65847166-65847185 | None:intergenic | 40.0% | |
TTTCTTGGAGCATGTTGATG+AGG | - | chr4_1:65847527-65847546 | None:intergenic | 40.0% | |
ACAACAACCTAGCACCAAAT+TGG | + | chr4_1:65847562-65847581 | Msa0565010:CDS | 40.0% | |
!! | TCACTAACCAATTTGGTGCT+AGG | - | chr4_1:65847572-65847591 | None:intergenic | 40.0% |
TAGCACCAAATTGGTTAGTG+AGG | + | chr4_1:65847571-65847590 | Msa0565010:CDS | 40.0% | |
!! | TCTTGGTATTGACACGTGTA+TGG | - | chr4_1:65847641-65847660 | None:intergenic | 40.0% |
TCCAATGCCTGACACAAAAA+TGG | + | chr4_1:65847775-65847794 | Msa0565010:CDS | 40.0% | |
!! | TCCATTTTTGTGTCAGGCAT+TGG | - | chr4_1:65847779-65847798 | None:intergenic | 40.0% |
!! | TGGTTCTCCATTTTTGTGTC+AGG | - | chr4_1:65847785-65847804 | None:intergenic | 40.0% |
! | GTTAGGCTTTTCAACCTCAT+AGG | - | chr4_1:65847825-65847844 | None:intergenic | 40.0% |
ATCAGGTCCATCCATAAAGA+AGG | + | chr4_1:65847871-65847890 | Msa0565010:intron | 40.0% | |
CACTCAGTGTTGTCAAATAG+CGG | + | chr4_1:65847939-65847958 | Msa0565010:intron | 40.0% | |
CAAGTAAGAATCTTTCCTGC+AGG | + | chr4_1:65848146-65848165 | Msa0565010:intron | 40.0% | |
TTTCTTGCCTCATGCATATC+TGG | - | chr4_1:65848219-65848238 | None:intergenic | 40.0% | |
AATGGACGAGTGAATCAAAG+AGG | + | chr4_1:65848241-65848260 | Msa0565010:CDS | 40.0% | |
GTAGGATCTCTTCATTTCGT+CGG | + | chr4_1:65848298-65848317 | Msa0565010:CDS | 40.0% | |
AACTTTCATGACCTTGGCTT+GGG | - | chr4_1:65848413-65848432 | None:intergenic | 40.0% | |
AAACTTTCATGACCTTGGCT+TGG | - | chr4_1:65848414-65848433 | None:intergenic | 40.0% | |
CTTGGCCAATTTCCATTGAA+AGG | - | chr4_1:65848485-65848504 | None:intergenic | 40.0% | |
GTGCAAAGCTCATTTGACAA+AGG | + | chr4_1:65848525-65848544 | Msa0565010:CDS | 40.0% | |
CCACAAGCCTGAAAGAATAT+AGG | - | chr4_1:65848999-65849018 | None:intergenic | 40.0% | |
CCTATATTCTTTCAGGCTTG+TGG | + | chr4_1:65848996-65849015 | Msa0565010:intron | 40.0% | |
AGGCTTGTGGGACTAAATAT+TGG | + | chr4_1:65849009-65849028 | Msa0565010:intron | 40.0% | |
TCTTAAAATTGAGCCCTGAC+AGG | + | chr4_1:65849138-65849157 | Msa0565010:intron | 40.0% | |
TGCTAGTGACAACTTGAAGT+AGG | - | chr4_1:65849652-65849671 | None:intergenic | 40.0% | |
! | CTCGTATAAGACTAGTTGGA+GGG | - | chr4_1:65849824-65849843 | None:intergenic | 40.0% |
! | TCTCGTATAAGACTAGTTGG+AGG | - | chr4_1:65849825-65849844 | None:intergenic | 40.0% |
! | TGAACCAACCAGTTCAAGTT+CGG | + | chr4_1:65850006-65850025 | Msa0565010:intron | 40.0% |
GATGATCTTCAAGACCTTCT+TGG | + | chr4_1:65850105-65850124 | Msa0565010:CDS | 40.0% | |
!! | GACCTTCTTGGTAATGCTAA+TGG | + | chr4_1:65850117-65850136 | Msa0565010:CDS | 40.0% |
! | TCCTTTGAGGATTGTAGTGT+TGG | + | chr4_1:65850143-65850162 | Msa0565010:CDS | 40.0% |
TCCAACACTACAATCCTCAA+AGG | - | chr4_1:65850147-65850166 | None:intergenic | 40.0% | |
TTGGTCCAAGATCCTTGTTA+TGG | + | chr4_1:65850204-65850223 | Msa0565010:CDS | 40.0% | |
ATTGGCCATAACAAGGATCT+TGG | - | chr4_1:65850212-65850231 | None:intergenic | 40.0% | |
TCACAGAATTGGCCATAACA+AGG | - | chr4_1:65850219-65850238 | None:intergenic | 40.0% | |
TAGTTATCGATGTGGGACTT+AGG | - | chr4_1:65850292-65850311 | None:intergenic | 40.0% | |
! | TTCAATTGGGAGCATATCCC+TGG | + | chr4_1:65847191-65847210 | Msa0565010:CDS | 45.0% |
CCTTTGCTGCAGGTAAAAAC+CGG | - | chr4_1:65847490-65847509 | None:intergenic | 45.0% | |
AAAGTCATAGCCTTTGCTGC+AGG | - | chr4_1:65847500-65847519 | None:intergenic | 45.0% | |
CACGTGTCAATACCAAGAAG+AGG | + | chr4_1:65847643-65847662 | Msa0565010:CDS | 45.0% | |
TGGAGAACCAAATTCCCATG+TGG | + | chr4_1:65847795-65847814 | Msa0565010:CDS | 45.0% | |
AGGAAGACCACATGGGAATT+TGG | - | chr4_1:65847805-65847824 | None:intergenic | 45.0% | |
ACCTCATAGGAAGACCACAT+GGG | - | chr4_1:65847812-65847831 | None:intergenic | 45.0% | |
AACCTCATAGGAAGACCACA+TGG | - | chr4_1:65847813-65847832 | None:intergenic | 45.0% | |
AAGAATCTTTCCTGCAGGCT+TGG | + | chr4_1:65848151-65848170 | Msa0565010:intron | 45.0% | |
AGAATCTTTCCTGCAGGCTT+GGG | + | chr4_1:65848152-65848171 | Msa0565010:intron | 45.0% | |
! | CTCATGCATATCTGGTGATG+AGG | - | chr4_1:65848211-65848230 | None:intergenic | 45.0% |
CTCATCACCAGATATGCATG+AGG | + | chr4_1:65848209-65848228 | Msa0565010:CDS | 45.0% | |
ATCTCTTCATTTCGTCGGTC+AGG | + | chr4_1:65848303-65848322 | Msa0565010:CDS | 45.0% | |
!! | GCGTATCTTCTTTTCGAGGT+AGG | + | chr4_1:65848343-65848362 | Msa0565010:CDS | 45.0% |
TTATTCTCGGCCTGAGATTG+AGG | - | chr4_1:65848369-65848388 | None:intergenic | 45.0% | |
GTTGCAAGGACATGGATTCT+TGG | - | chr4_1:65848503-65848522 | None:intergenic | 45.0% | |
TTGCACAAGTTGCAAGGACA+TGG | - | chr4_1:65848511-65848530 | None:intergenic | 45.0% | |
TGAGCTTTGCACAAGTTGCA+AGG | - | chr4_1:65848517-65848536 | None:intergenic | 45.0% | |
! | TGTTCCTCGACTCGAATACA+CGG | - | chr4_1:65848712-65848731 | None:intergenic | 45.0% |
AGCATCCAGCTATAGCAAGT+GGG | + | chr4_1:65848767-65848786 | Msa0565010:CDS | 45.0% | |
!! | TGTTTCCCACTTGCTATAGC+TGG | - | chr4_1:65848775-65848794 | None:intergenic | 45.0% |
! | AAAATGGTGTCAGCCTGTCA+GGG | - | chr4_1:65849154-65849173 | None:intergenic | 45.0% |
! | AAAAATGGTGTCAGCCTGTC+AGG | - | chr4_1:65849155-65849174 | None:intergenic | 45.0% |
CTTCGAATGCTGTGCATTTC+AGG | + | chr4_1:65849487-65849506 | Msa0565010:intron | 45.0% | |
! | GTATAAGACTAGTTGGAGGG+TGG | - | chr4_1:65849821-65849840 | None:intergenic | 45.0% |
ACTTTGGTCCGAACTTGAAC+TGG | - | chr4_1:65850017-65850036 | None:intergenic | 45.0% | |
! | GTTCAAGTTCGGACCAAAGT+TGG | + | chr4_1:65850017-65850036 | Msa0565010:intron | 45.0% |
! | ATGGATTACCGGTCCAACTT+TGG | - | chr4_1:65850033-65850052 | None:intergenic | 45.0% |
GAGCGTCTCACAGACATAAG+AGG | - | chr4_1:65847047-65847066 | None:intergenic | 50.0% | |
! | CCGGTTTTTACCTGCAGCAA+AGG | + | chr4_1:65847487-65847506 | Msa0565010:CDS | 50.0% |
TCCCATGTGGTCTTCCTATG+AGG | + | chr4_1:65847808-65847827 | Msa0565010:CDS | 50.0% | |
! | CATATCTGGTGATGAGGCTC+CGG | - | chr4_1:65848205-65848224 | None:intergenic | 50.0% |
! | GCTGGCGTATCTTCTTTTCG+AGG | + | chr4_1:65848339-65848358 | Msa0565010:CDS | 50.0% |
! | TTTCAAGAGGCGCAGTCACA+AGG | + | chr4_1:65848432-65848451 | Msa0565010:CDS | 50.0% |
AAGGTGACTTTGGCAGTGGT+GGG | - | chr4_1:65848638-65848657 | None:intergenic | 50.0% | |
TCAGAAGGTGACTTTGGCAG+TGG | - | chr4_1:65848642-65848661 | None:intergenic | 50.0% | |
CACGACTCAGAAGGTGACTT+TGG | - | chr4_1:65848648-65848667 | None:intergenic | 50.0% | |
CAAAGTCACCTTCTGAGTCG+TGG | + | chr4_1:65848646-65848665 | Msa0565010:CDS | 50.0% | |
GAGCATCCAGCTATAGCAAG+TGG | + | chr4_1:65848766-65848785 | Msa0565010:CDS | 50.0% | |
TTTCAGTGTTTAGGAGGGCG+AGG | + | chr4_1:65849674-65849693 | Msa0565010:intron | 50.0% | |
GAGGGTGGTCATGCTAAGAT+AGG | - | chr4_1:65849806-65849825 | None:intergenic | 50.0% | |
TGGTCCGAACTTGAACTGGT+TGG | - | chr4_1:65850013-65850032 | None:intergenic | 50.0% | |
AGTTCGGACCAAAGTTGGAC+CGG | + | chr4_1:65850022-65850041 | Msa0565010:intron | 50.0% | |
!!! | GGGGGAGTGTTTTTGCAGTT+TGG | + | chr4_1:65850185-65850204 | Msa0565010:CDS | 50.0% |
GAATAGCATCCCAAGCCTGC+AGG | - | chr4_1:65848164-65848183 | None:intergenic | 55.0% | |
TCGAGGTAGGCCTCAATCTC+AGG | + | chr4_1:65848356-65848375 | Msa0565010:CDS | 55.0% | |
! | TTGGCAGTGGTGGGGAAAGA+AGG | - | chr4_1:65848629-65848648 | None:intergenic | 55.0% |
AGGTGACTTTGGCAGTGGTG+GGG | - | chr4_1:65848637-65848656 | None:intergenic | 55.0% | |
GAAGGTGACTTTGGCAGTGG+TGG | - | chr4_1:65848639-65848658 | None:intergenic | 55.0% | |
CGACAAAGCCACGACTCAGA+AGG | - | chr4_1:65848657-65848676 | None:intergenic | 55.0% | |
CAGTCCGTGTATTCGAGTCG+AGG | + | chr4_1:65848705-65848724 | Msa0565010:CDS | 55.0% | |
! | GTAGTGTTGGAGCGCGTGCT+TGG | + | chr4_1:65850156-65850175 | Msa0565010:CDS | 60.0% |
TGTTGGAGCGCGTGCTTGGT+TGG | + | chr4_1:65850160-65850179 | Msa0565010:CDS | 60.0% | |
GTTGGAGCGCGTGCTTGGTT+GGG | + | chr4_1:65850161-65850180 | Msa0565010:CDS | 60.0% | |
TCAGGAGCTGCTGCTGCTGC+TGG | + | chr4_1:65848321-65848340 | Msa0565010:CDS | 65.0% | |
GAGCGCGTGCTTGGTTGGGT+GGG | + | chr4_1:65850165-65850184 | Msa0565010:CDS | 65.0% | |
AGCGCGTGCTTGGTTGGGTG+GGG | + | chr4_1:65850166-65850185 | Msa0565010:CDS | 65.0% | |
GGAGCGCGTGCTTGGTTGGG+TGG | + | chr4_1:65850164-65850183 | Msa0565010:CDS | 70.0% | |
GCGCGTGCTTGGTTGGGTGG+GGG | + | chr4_1:65850167-65850186 | Msa0565010:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 65847011 | 65850430 | 65847011 | ID=Msa0565010;Name=Msa0565010 |
chr4_1 | mRNA | 65847011 | 65850430 | 65847011 | ID=Msa0565010-mRNA-1;Parent=Msa0565010;Name=Msa0565010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.33|0.5|1|1|1|4|137|578 |
chr4_1 | exon | 65847011 | 65847829 | 65847011 | ID=Msa0565010-mRNA-1:exon:21257;Parent=Msa0565010-mRNA-1 |
chr4_1 | exon | 65848168 | 65848842 | 65848168 | ID=Msa0565010-mRNA-1:exon:21258;Parent=Msa0565010-mRNA-1 |
chr4_1 | exon | 65849011 | 65849053 | 65849011 | ID=Msa0565010-mRNA-1:exon:21259;Parent=Msa0565010-mRNA-1 |
chr4_1 | exon | 65850094 | 65850430 | 65850094 | ID=Msa0565010-mRNA-1:exon:21260;Parent=Msa0565010-mRNA-1 |
chr4_1 | CDS | 65847011 | 65847829 | 65847011 | ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1 |
chr4_1 | CDS | 65848168 | 65848842 | 65848168 | ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1 |
chr4_1 | CDS | 65849011 | 65849053 | 65849011 | ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1 |
chr4_1 | CDS | 65850094 | 65850293 | 65850094 | ID=Msa0565010-mRNA-1:cds;Parent=Msa0565010-mRNA-1 |
chr4_1 | three_prime_UTR | 65850294 | 65850430 | 65850294 | ID=Msa0565010-mRNA-1:three_prime_utr;Parent=Msa0565010-mRNA-1 |
Gene Sequence |
Protein sequence |