AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174220 MtrunA17_Chr8g0379141 87.617 533 37 5 1 510 1 527 0.0 871
Msa1174220 MtrunA17_Chr2g0283911 42.138 477 168 17 2 382 1 465 1.41e-80 265
Msa1174220 MtrunA17_Chr2g0283911 51.181 127 49 3 383 509 568 681 1.01e-22 102
Msa1174220 MtrunA17_Chr4g0041221 32.298 322 153 13 1 266 107 419 1.85e-27 116
Msa1174220 MtrunA17_Chr2g0325871 32.632 285 152 12 1 266 6 269 6.02e-22 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174220 AT1G29240.1 28.264 605 310 21 2 510 1 577 2.90e-37 145
Msa1174220 AT5G45850.1 27.500 560 235 23 2 507 1 443 5.37e-27 114
Msa1174220 AT2G30990.3 31.206 282 157 11 1 265 7 268 4.94e-25 108
Msa1174220 AT2G30990.4 29.967 307 158 10 1 265 7 298 4.26e-22 100
Msa1174220 AT2G30990.1 29.967 307 158 10 1 265 7 298 4.26e-22 100
Msa1174220 AT2G30990.5 29.967 307 158 10 1 265 7 298 4.26e-22 100
Msa1174220 AT2G30990.2 29.967 307 158 10 1 265 7 298 4.26e-22 100
Msa1174220 AT4G18630.1 25.777 547 286 21 2 503 1 472 2.17e-21 97.4
Msa1174220 AT2G34170.4 28.571 462 246 17 116 510 79 523 2.45e-14 75.9
Msa1174220 AT2G34170.6 28.571 462 246 17 116 510 79 523 2.45e-14 75.9
Msa1174220 AT2G34170.2 28.571 462 246 17 116 510 79 523 2.45e-14 75.9
Msa1174220 AT2G34170.1 28.571 462 246 17 116 510 79 523 2.45e-14 75.9
Msa1174220 AT2G34170.5 28.571 462 246 17 116 510 79 523 2.45e-14 75.9
Msa1174220 AT2G34170.3 28.571 462 246 17 116 510 79 523 2.45e-14 75.9

Find 103 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAATTTGAACTTCTTT+TGG 0.115235 8_1:+5303929 None:intergenic
TATATTTCCTATATTCTTTC+AGG 0.128160 8_1:-5303397 Msa1174220:three_prime_UTR
TTTCTTCTTCTTCCTCTTCT+TGG 0.145703 8_1:+5304731 None:intergenic
CATTAGTTTATATGTACTTC+TGG 0.207311 8_1:+5303084 None:intergenic
AAATGAAAAGCTACAGAATT+TGG 0.218935 8_1:-5305079 Msa1174220:CDS
TGTAAGCGGTTTGGATAATT+TGG 0.219338 8_1:-5304983 Msa1174220:CDS
TTTCTTGCCTCATGCATATC+TGG 0.234829 8_1:+5304170 None:intergenic
CACAATCACATGCTGTTAAA+AGG 0.240194 8_1:-5303656 Msa1174220:CDS
AGGAACCTTTCAATGGAAAT+TGG 0.242168 8_1:-5303909 Msa1174220:CDS
AAAACAAACAAAGCTTCTTT+TGG 0.246619 8_1:-5303151 Msa1174220:three_prime_UTR
AGGAAGACCACATGGGAATT+TGG 0.262676 8_1:+5304584 None:intergenic
TGATCATGATTTCTGTTCTA+AGG 0.272741 8_1:-5303565 Msa1174220:intron
TGTTGAAGACAGTGTTTCTA+AGG 0.291639 8_1:+5305017 None:intergenic
ACAACAACCTAGCACCAAAT+TGG 0.300860 8_1:-5304824 Msa1174220:CDS
AGGCTTGTGGGACTAAATAT+TGG 0.310247 8_1:-5303377 Msa1174220:three_prime_UTR
CGAAAACAGGTTCTGTTACT+TGG 0.317824 8_1:+5305223 None:intergenic
TCAGGAGCTGCTGCTGCTGC+TGG 0.322511 8_1:-5304065 Msa1174220:CDS
TGAATGCTGAGGTTTATATA+AGG 0.345558 8_1:+5303451 None:intergenic
AACTTTCATGACCTTGGCTT+GGG 0.359161 8_1:+5303976 None:intergenic
TGTAATGGTGTCAGCCTGTC+AGG 0.361930 8_1:+5303234 None:intergenic
TGGACTAATGGTACCTTCAA+TGG 0.363265 8_1:-5303131 Msa1174220:three_prime_UTR
CTATATTCTTTCAGGCTTGT+GGG 0.366361 8_1:-5303389 Msa1174220:three_prime_UTR
CCTATATTCTTTCAGGCTTG+TGG 0.371093 8_1:-5303390 Msa1174220:three_prime_UTR
TGTTTCCCACTTGCTATAGC+TGG 0.374061 8_1:+5303614 None:intergenic
GTTGCAAGGACATGGATTCT+TGG 0.383545 8_1:+5303886 None:intergenic
ATCATTATGTGTAAGCGGTT+TGG 0.386450 8_1:-5304992 Msa1174220:CDS
TCGAGGTAGGCCTCAATCTC+AGG 0.393361 8_1:-5304030 Msa1174220:CDS
ATTAGTTTATATGTACTTCT+GGG 0.405301 8_1:+5303085 None:intergenic
CTCAAGAATTCATGATGAAC+CGG 0.406764 8_1:-5304918 Msa1174220:CDS
CCACAAGCCTGAAAGAATAT+AGG 0.407568 8_1:+5303390 None:intergenic
ATCTCTTCATTTCGTCGGTC+AGG 0.413475 8_1:-5304083 Msa1174220:CDS
GACAACAAATGTAAACATAA+TGG 0.416311 8_1:+5303272 None:intergenic
TCCCATGTGGTCTTCCTATG+AGG 0.424888 8_1:-5304578 Msa1174220:intron
AAATTCAAGGAACCTTTCAA+TGG 0.425265 8_1:-5303916 Msa1174220:CDS
AATATTTCAGCTAAGGGTTG+TGG 0.425504 8_1:-5304679 Msa1174220:CDS
CTTGAAAACTTTCATGACCT+TGG 0.430428 8_1:+5303970 None:intergenic
GTTGTAGTTGATGATGGTTT+AGG 0.433631 8_1:-5303810 Msa1174220:CDS
CTAAACTTGATAACAAGGTT+AGG 0.446055 8_1:-5305167 Msa1174220:CDS
TCTTGGTATTGACACGTGTA+TGG 0.453421 8_1:+5304748 None:intergenic
AAACTTTCATGACCTTGGCT+TGG 0.457228 8_1:+5303975 None:intergenic
CCAAAAGAAGTTCAAATTCA+AGG 0.459922 8_1:-5303929 Msa1174220:CDS
CTTGGCCAATTTCCATTGAA+AGG 0.462261 8_1:+5303904 None:intergenic
TCACTAACCAATTTGGTGCT+AGG 0.464499 8_1:+5304817 None:intergenic
CATATCTGGTGATGAGGCTT+CGG 0.470699 8_1:+5304184 None:intergenic
GAAGGTGACTTTGGCAGTGG+TGG 0.472083 8_1:+5303750 None:intergenic
TTGCACAAGTTGCAAGGACA+TGG 0.478353 8_1:+5303878 None:intergenic
CAAATTGTTGTAGTTGATGA+TGG 0.479110 8_1:-5303816 Msa1174220:CDS
CAATTGAAAGACACGAAAAC+AGG 0.484249 8_1:+5305210 None:intergenic
TTGGCAGTGGTGGGGAAAGA+AGG 0.486436 8_1:+5303760 None:intergenic
TTATTCTCGGCCTGAGATTG+AGG 0.486901 8_1:+5304020 None:intergenic
TTCAATTGGGAGCATATCCC+TGG 0.489660 8_1:-5305195 Msa1174220:CDS
GAGCGTCTCACAGACATAAG+AGG 0.491919 8_1:+5305342 None:intergenic
TATGCAAATATTTCAGCTAA+GGG 0.492036 8_1:-5304685 Msa1174220:CDS
TCTTAAAATTGAGCCCTGAC+AGG 0.493049 8_1:-5303248 Msa1174220:three_prime_UTR
TTTGCTTCAGTTGAAGATGT+TGG 0.500023 8_1:+5305309 None:intergenic
TTATGCAAATATTTCAGCTA+AGG 0.504055 8_1:-5304686 Msa1174220:CDS
GTGAACTTAGTCAGATAAGT+AGG 0.505305 8_1:-5304106 Msa1174220:CDS
CACGACTCAGAAGGTGACTT+TGG 0.507091 8_1:+5303741 None:intergenic
TTATCAAGTTTAGATTTACC+AGG 0.517411 8_1:+5305177 None:intergenic
AGCATTCAAAATCTTAGAGA+TGG 0.528745 8_1:-5303436 Msa1174220:exon
AAAGTCATAGCCTTTGCTGC+AGG 0.531670 8_1:+5304889 None:intergenic
AAGGTGACTTTGGCAGTGGT+GGG 0.542375 8_1:+5303751 None:intergenic
TAAAGAATTCGATTTACTTG+AGG 0.545338 8_1:+5305143 None:intergenic
TCACATGCTGTTAAAAGGAT+AGG 0.546488 8_1:-5303651 Msa1174220:CDS
ATAGGTAACTAAATTTCTCA+TGG 0.551702 8_1:-5303336 Msa1174220:three_prime_UTR
TGGAACATAATGATGAATGA+AGG 0.554781 8_1:-5305384 None:intergenic
GAATTCTTAATGCATGAACT+AGG 0.555451 8_1:+5304649 None:intergenic
GAGCATCCAGCTATAGCAAG+TGG 0.557921 8_1:-5303620 Msa1174220:CDS
AAATCTTAGAGATGGAACTC+TGG 0.561183 8_1:-5303428 Msa1174220:exon
TTTCAAGAGGCGCAGTCACA+AGG 0.562045 8_1:-5303954 Msa1174220:CDS
GTAGGATCTCTTCATTTCGT+CGG 0.565108 8_1:-5304088 Msa1174220:CDS
TGATTCTTCAAAGAAACTAA+AGG 0.565821 8_1:+5303702 None:intergenic
AAAGCTACAGAATTTGGAAG+AGG 0.565842 8_1:-5305073 Msa1174220:CDS
TGAGCTTTGCACAAGTTGCA+AGG 0.572711 8_1:+5303872 None:intergenic
ACAGAATCATTATGTGTAAG+CGG 0.580192 8_1:-5304997 Msa1174220:CDS
AAGAGGTATAATGCTTACTC+TGG 0.580329 8_1:-5304128 Msa1174220:CDS
AAAAGAATACATATCCTAAG+TGG 0.580968 8_1:-5303183 Msa1174220:three_prime_UTR
CAAAGTCACCTTCTGAGTCG+TGG 0.581092 8_1:-5303740 Msa1174220:CDS
TCAGAAGGTGACTTTGGCAG+TGG 0.585919 8_1:+5303747 None:intergenic
TTAGTTTATATGTACTTCTG+GGG 0.589601 8_1:+5303086 None:intergenic
CATTGGATTTAATAAACACA+AGG 0.593023 8_1:+5304627 None:intergenic
CTCATGCATATCTGGTGATG+AGG 0.593781 8_1:+5304178 None:intergenic
GGAACATAATGATGAATGAA+GGG 0.600386 8_1:-5305383 None:intergenic
TTTCTTGGAGCATGTTGATG+AGG 0.603285 8_1:+5304862 None:intergenic
TAGCACCAAATTGGTTAGTG+AGG 0.603329 8_1:-5304815 Msa1174220:CDS
CACGTGTCAATACCAAGAAG+AGG 0.603427 8_1:-5304743 Msa1174220:CDS
CGACAAAGCCACGACTCAGA+AGG 0.606984 8_1:+5303732 None:intergenic
TAAATCTAAACTTGATAACA+AGG 0.612595 8_1:-5305172 Msa1174220:CDS
AAGCTACAGAATTTGGAAGA+GGG 0.613004 8_1:-5305072 Msa1174220:CDS
TATCAAGTTTAGATTTACCA+GGG 0.620380 8_1:+5305178 None:intergenic
AAATTGAAATTCCCAAGCCA+AGG 0.620852 8_1:-5303987 Msa1174220:CDS
GTAATGGTGTCAGCCTGTCA+GGG 0.629683 8_1:+5303235 None:intergenic
TGTTCCTCGACTCGAATACA+CGG 0.631344 8_1:+5303677 None:intergenic
AACCTCATAGGAAGACCACA+TGG 0.651576 8_1:+5304576 None:intergenic
AGGTGACTTTGGCAGTGGTG+GGG 0.655340 8_1:+5303752 None:intergenic
AATAAAGTAGATCATGACAA+AGG 0.655952 8_1:-5305108 Msa1174220:CDS
AATGGACGAGTGAATCAAAG+AGG 0.657948 8_1:-5304145 Msa1174220:CDS
AGCATCCAGCTATAGCAAGT+GGG 0.660589 8_1:-5303619 Msa1174220:CDS
GTGCAAAGCTCATTTGACAA+AGG 0.661335 8_1:-5303861 Msa1174220:CDS
CAGTCCGTGTATTCGAGTCG+AGG 0.663096 8_1:-5303681 Msa1174220:CDS
CTCATCACCAGATATGCATG+AGG 0.681013 8_1:-5304177 Msa1174220:CDS
ACCTCATAGGAAGACCACAT+GGG 0.707126 8_1:+5304577 None:intergenic
TGGAGAACCAAATTCCCATG+TGG 0.730190 8_1:-5304591 Msa1174220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGATTTACAAAATG+AGG + chr8_1:5304111-5304130 None:intergenic 15.0%
!!! CAAAGATATAAATTTTTAAC+TGG - chr8_1:5304887-5304906 Msa1174220:CDS 15.0%
!! ATAAAATGATTTACAAAATG+AGG + chr8_1:5304111-5304130 None:intergenic 15.0%
!!! CAAAGATATAAATTTTTAAC+TGG - chr8_1:5304887-5304906 Msa1174220:CDS 15.0%
!!! TAAATCTAAACTTGATAACA+AGG - chr8_1:5303215-5303234 Msa1174220:three_prime_UTR 20.0%
!!! TTTTCTAATTTGGTTATTCT+CGG + chr8_1:5304383-5304402 None:intergenic 20.0%
!!! GGAATTTCAATTTTCTAATT+TGG + chr8_1:5304393-5304412 None:intergenic 20.0%
!! AACATAAAATATTAGCTCAA+TGG + chr8_1:5304861-5304880 None:intergenic 20.0%
!! TATATTTCCTATATTCTTTC+AGG - chr8_1:5304990-5305009 Msa1174220:CDS 20.0%
!! ATGTATCAAGAAAAATGTAA+TGG + chr8_1:5305171-5305190 None:intergenic 20.0%
!!! ATTAGTTTATATGTACTTCT+GGG + chr8_1:5305305-5305324 None:intergenic 20.0%
!!! TAAATCTAAACTTGATAACA+AGG - chr8_1:5303215-5303234 Msa1174220:three_prime_UTR 20.0%
!!! TTTTCTAATTTGGTTATTCT+CGG + chr8_1:5304383-5304402 None:intergenic 20.0%
!!! GGAATTTCAATTTTCTAATT+TGG + chr8_1:5304393-5304412 None:intergenic 20.0%
!! AACATAAAATATTAGCTCAA+TGG + chr8_1:5304861-5304880 None:intergenic 20.0%
!! TATATTTCCTATATTCTTTC+AGG - chr8_1:5304990-5305009 Msa1174220:CDS 20.0%
!! ATGTATCAAGAAAAATGTAA+TGG + chr8_1:5305171-5305190 None:intergenic 20.0%
!!! ATTAGTTTATATGTACTTCT+GGG + chr8_1:5305305-5305324 None:intergenic 20.0%
! TATCAAGTTTAGATTTACCA+GGG + chr8_1:5303212-5303231 None:intergenic 25.0%
! TTATCAAGTTTAGATTTACC+AGG + chr8_1:5303213-5303232 None:intergenic 25.0%
! TAAAGAATTCGATTTACTTG+AGG + chr8_1:5303247-5303266 None:intergenic 25.0%
! AATAAAGTAGATCATGACAA+AGG - chr8_1:5303279-5303298 Msa1174220:three_prime_UTR 25.0%
! AAATGAAAAGCTACAGAATT+TGG - chr8_1:5303308-5303327 Msa1174220:three_prime_UTR 25.0%
! TTATGCAAATATTTCAGCTA+AGG - chr8_1:5303701-5303720 Msa1174220:CDS 25.0%
! TATGCAAATATTTCAGCTAA+GGG - chr8_1:5303702-5303721 Msa1174220:CDS 25.0%
! CATTGGATTTAATAAACACA+AGG + chr8_1:5303763-5303782 None:intergenic 25.0%
! CAATATAGCTCTTATAAATC+AGG - chr8_1:5303855-5303874 Msa1174220:CDS 25.0%
! AAATTGCTATCTTGATTGAA+CGG - chr8_1:5304047-5304066 Msa1174220:CDS 25.0%
! TGATTCTTCAAAGAAACTAA+AGG + chr8_1:5304688-5304707 None:intergenic 25.0%
!!! TTTGTTTTGCATGATATCAT+AGG - chr8_1:5305033-5305052 Msa1174220:CDS 25.0%
! ATAGGTAACTAAATTTCTCA+TGG - chr8_1:5305051-5305070 Msa1174220:CDS 25.0%
! GACAACAAATGTAAACATAA+TGG + chr8_1:5305118-5305137 None:intergenic 25.0%
! AAAAGAATACATATCCTAAG+TGG - chr8_1:5305204-5305223 Msa1174220:CDS 25.0%
!! AAAACAAACAAAGCTTCTTT+TGG - chr8_1:5305236-5305255 Msa1174220:CDS 25.0%
!! TGAAATTTTGAATCCATTGA+AGG + chr8_1:5305272-5305291 None:intergenic 25.0%
! TTAGTTTATATGTACTTCTG+GGG + chr8_1:5305304-5305323 None:intergenic 25.0%
!! CATTAGTTTATATGTACTTC+TGG + chr8_1:5305306-5305325 None:intergenic 25.0%
! TATCAAGTTTAGATTTACCA+GGG + chr8_1:5303212-5303231 None:intergenic 25.0%
! TTATCAAGTTTAGATTTACC+AGG + chr8_1:5303213-5303232 None:intergenic 25.0%
! TAAAGAATTCGATTTACTTG+AGG + chr8_1:5303247-5303266 None:intergenic 25.0%
! AATAAAGTAGATCATGACAA+AGG - chr8_1:5303279-5303298 Msa1174220:three_prime_UTR 25.0%
! AAATGAAAAGCTACAGAATT+TGG - chr8_1:5303308-5303327 Msa1174220:three_prime_UTR 25.0%
! TTATGCAAATATTTCAGCTA+AGG - chr8_1:5303701-5303720 Msa1174220:CDS 25.0%
! TATGCAAATATTTCAGCTAA+GGG - chr8_1:5303702-5303721 Msa1174220:CDS 25.0%
! CATTGGATTTAATAAACACA+AGG + chr8_1:5303763-5303782 None:intergenic 25.0%
! CAATATAGCTCTTATAAATC+AGG - chr8_1:5303855-5303874 Msa1174220:CDS 25.0%
! AAATTGCTATCTTGATTGAA+CGG - chr8_1:5304047-5304066 Msa1174220:CDS 25.0%
! TGATTCTTCAAAGAAACTAA+AGG + chr8_1:5304688-5304707 None:intergenic 25.0%
!!! TTTGTTTTGCATGATATCAT+AGG - chr8_1:5305033-5305052 Msa1174220:CDS 25.0%
! ATAGGTAACTAAATTTCTCA+TGG - chr8_1:5305051-5305070 Msa1174220:CDS 25.0%
! GACAACAAATGTAAACATAA+TGG + chr8_1:5305118-5305137 None:intergenic 25.0%
! AAAAGAATACATATCCTAAG+TGG - chr8_1:5305204-5305223 Msa1174220:CDS 25.0%
!! AAAACAAACAAAGCTTCTTT+TGG - chr8_1:5305236-5305255 Msa1174220:CDS 25.0%
!! TGAAATTTTGAATCCATTGA+AGG + chr8_1:5305272-5305291 None:intergenic 25.0%
! TTAGTTTATATGTACTTCTG+GGG + chr8_1:5305304-5305323 None:intergenic 25.0%
!! CATTAGTTTATATGTACTTC+TGG + chr8_1:5305306-5305325 None:intergenic 25.0%
! TGTTTTCGTGTCTTTCAATT+GGG - chr8_1:5303179-5303198 Msa1174220:three_prime_UTR 30.0%
! CTAAACTTGATAACAAGGTT+AGG - chr8_1:5303220-5303239 Msa1174220:three_prime_UTR 30.0%
ACAGAATCATTATGTGTAAG+CGG - chr8_1:5303390-5303409 Msa1174220:three_prime_UTR 30.0%
! AACAGAACAGATTGTTTTCT+TGG + chr8_1:5303543-5303562 None:intergenic 30.0%
GAATTCTTAATGCATGAACT+AGG + chr8_1:5303741-5303760 None:intergenic 30.0%
CTATATTGAGAACTTCTGTT+AGG + chr8_1:5303843-5303862 None:intergenic 30.0%
ATAGAAAACTCAGACTAACA+TGG + chr8_1:5303904-5303923 None:intergenic 30.0%
TGATTTACAAAATGAGGTCA+AGG + chr8_1:5304105-5304124 None:intergenic 30.0%
! CCTTGAATTTGAACTTCTTT+TGG + chr8_1:5304461-5304480 None:intergenic 30.0%
CCAAAAGAAGTTCAAATTCA+AGG - chr8_1:5304458-5304477 Msa1174220:intron 30.0%
AAATTCAAGGAACCTTTCAA+TGG - chr8_1:5304471-5304490 Msa1174220:intron 30.0%
!! CAAATTGTTGTAGTTGATGA+TGG - chr8_1:5304571-5304590 Msa1174220:intron 30.0%
TGATCATGATTTCTGTTCTA+AGG - chr8_1:5304822-5304841 Msa1174220:CDS 30.0%
ATTAGCTCAATGGATAAATG+AGG + chr8_1:5304851-5304870 None:intergenic 30.0%
TGGCAATTAACTTTCATTAC+AGG - chr8_1:5304907-5304926 Msa1174220:CDS 30.0%
TGAATGCTGAGGTTTATATA+AGG + chr8_1:5304939-5304958 None:intergenic 30.0%
AGCATTCAAAATCTTAGAGA+TGG - chr8_1:5304951-5304970 Msa1174220:CDS 30.0%
! GTTTTTATTGATCACCACTT+AGG + chr8_1:5305221-5305240 None:intergenic 30.0%
! TGTTTTCGTGTCTTTCAATT+GGG - chr8_1:5303179-5303198 Msa1174220:three_prime_UTR 30.0%
! CTAAACTTGATAACAAGGTT+AGG - chr8_1:5303220-5303239 Msa1174220:three_prime_UTR 30.0%
ACAGAATCATTATGTGTAAG+CGG - chr8_1:5303390-5303409 Msa1174220:three_prime_UTR 30.0%
! AACAGAACAGATTGTTTTCT+TGG + chr8_1:5303543-5303562 None:intergenic 30.0%
GAATTCTTAATGCATGAACT+AGG + chr8_1:5303741-5303760 None:intergenic 30.0%
CTATATTGAGAACTTCTGTT+AGG + chr8_1:5303843-5303862 None:intergenic 30.0%
ATAGAAAACTCAGACTAACA+TGG + chr8_1:5303904-5303923 None:intergenic 30.0%
TGATTTACAAAATGAGGTCA+AGG + chr8_1:5304105-5304124 None:intergenic 30.0%
! CCTTGAATTTGAACTTCTTT+TGG + chr8_1:5304461-5304480 None:intergenic 30.0%
CCAAAAGAAGTTCAAATTCA+AGG - chr8_1:5304458-5304477 Msa1174220:intron 30.0%
AAATTCAAGGAACCTTTCAA+TGG - chr8_1:5304471-5304490 Msa1174220:intron 30.0%
!! CAAATTGTTGTAGTTGATGA+TGG - chr8_1:5304571-5304590 Msa1174220:intron 30.0%
TGATCATGATTTCTGTTCTA+AGG - chr8_1:5304822-5304841 Msa1174220:CDS 30.0%
ATTAGCTCAATGGATAAATG+AGG + chr8_1:5304851-5304870 None:intergenic 30.0%
TGGCAATTAACTTTCATTAC+AGG - chr8_1:5304907-5304926 Msa1174220:CDS 30.0%
TGAATGCTGAGGTTTATATA+AGG + chr8_1:5304939-5304958 None:intergenic 30.0%
AGCATTCAAAATCTTAGAGA+TGG - chr8_1:5304951-5304970 Msa1174220:CDS 30.0%
! GTTTTTATTGATCACCACTT+AGG + chr8_1:5305221-5305240 None:intergenic 30.0%
TTTGCTTCAGTTGAAGATGT+TGG + chr8_1:5303081-5303100 None:intergenic 35.0%
CAATTGAAAGACACGAAAAC+AGG + chr8_1:5303180-5303199 None:intergenic 35.0%
! CTGTTTTCGTGTCTTTCAAT+TGG - chr8_1:5303178-5303197 Msa1174220:three_prime_UTR 35.0%
AAAGCTACAGAATTTGGAAG+AGG - chr8_1:5303314-5303333 Msa1174220:three_prime_UTR 35.0%
AAGCTACAGAATTTGGAAGA+GGG - chr8_1:5303315-5303334 Msa1174220:three_prime_UTR 35.0%
! TGTTGAAGACAGTGTTTCTA+AGG + chr8_1:5303373-5303392 None:intergenic 35.0%
ATCATTATGTGTAAGCGGTT+TGG - chr8_1:5303395-5303414 Msa1174220:three_prime_UTR 35.0%
! TGTAAGCGGTTTGGATAATT+TGG - chr8_1:5303404-5303423 Msa1174220:three_prime_UTR 35.0%
CTCAAGAATTCATGATGAAC+CGG - chr8_1:5303469-5303488 Msa1174220:intron 35.0%
! CTTTTCCTCACTAACCAATT+TGG + chr8_1:5303580-5303599 None:intergenic 35.0%
TTTCTTCTTCTTCCTCTTCT+TGG + chr8_1:5303659-5303678 None:intergenic 35.0%
AATATTTCAGCTAAGGGTTG+TGG - chr8_1:5303708-5303727 Msa1174220:CDS 35.0%
GTTCTTACCTTCTTTATGGA+TGG + chr8_1:5303882-5303901 None:intergenic 35.0%
CATGGTTCTTACCTTCTTTA+TGG + chr8_1:5303886-5303905 None:intergenic 35.0%
! ATGCACTATCGACTATTGAA+AGG + chr8_1:5304080-5304099 None:intergenic 35.0%
TGCATGAGGCAAGAAAAAAA+TGG - chr8_1:5304224-5304243 Msa1174220:intron 35.0%
! AAGAGGTATAATGCTTACTC+TGG - chr8_1:5304259-5304278 Msa1174220:intron 35.0%
GTGAACTTAGTCAGATAAGT+AGG - chr8_1:5304281-5304300 Msa1174220:intron 35.0%
AAATTGAAATTCCCAAGCCA+AGG - chr8_1:5304400-5304419 Msa1174220:intron 35.0%
CTTGAAAACTTTCATGACCT+TGG + chr8_1:5304420-5304439 None:intergenic 35.0%
!! AGGTCATGAAAGTTTTCAAG+AGG - chr8_1:5304420-5304439 Msa1174220:intron 35.0%
AGGAACCTTTCAATGGAAAT+TGG - chr8_1:5304478-5304497 Msa1174220:intron 35.0%
!! GTTGTAGTTGATGATGGTTT+AGG - chr8_1:5304577-5304596 Msa1174220:intron 35.0%
CACAATCACATGCTGTTAAA+AGG - chr8_1:5304731-5304750 Msa1174220:CDS 35.0%
TCACATGCTGTTAAAAGGAT+AGG - chr8_1:5304736-5304755 Msa1174220:CDS 35.0%
!!! CTCTAAGATTTTGAATGCTG+AGG + chr8_1:5304950-5304969 None:intergenic 35.0%
AAATCTTAGAGATGGAACTC+TGG - chr8_1:5304959-5304978 Msa1174220:CDS 35.0%
CTATATTCTTTCAGGCTTGT+GGG - chr8_1:5304998-5305017 Msa1174220:CDS 35.0%
! CAAAGCTTCTTTTGGACTAA+TGG - chr8_1:5305244-5305263 Msa1174220:CDS 35.0%
TTTGCTTCAGTTGAAGATGT+TGG + chr8_1:5303081-5303100 None:intergenic 35.0%
CAATTGAAAGACACGAAAAC+AGG + chr8_1:5303180-5303199 None:intergenic 35.0%
! CTGTTTTCGTGTCTTTCAAT+TGG - chr8_1:5303178-5303197 Msa1174220:three_prime_UTR 35.0%
AAAGCTACAGAATTTGGAAG+AGG - chr8_1:5303314-5303333 Msa1174220:three_prime_UTR 35.0%
AAGCTACAGAATTTGGAAGA+GGG - chr8_1:5303315-5303334 Msa1174220:three_prime_UTR 35.0%
! TGTTGAAGACAGTGTTTCTA+AGG + chr8_1:5303373-5303392 None:intergenic 35.0%
ATCATTATGTGTAAGCGGTT+TGG - chr8_1:5303395-5303414 Msa1174220:three_prime_UTR 35.0%
! TGTAAGCGGTTTGGATAATT+TGG - chr8_1:5303404-5303423 Msa1174220:three_prime_UTR 35.0%
CTCAAGAATTCATGATGAAC+CGG - chr8_1:5303469-5303488 Msa1174220:intron 35.0%
! CTTTTCCTCACTAACCAATT+TGG + chr8_1:5303580-5303599 None:intergenic 35.0%
TTTCTTCTTCTTCCTCTTCT+TGG + chr8_1:5303659-5303678 None:intergenic 35.0%
AATATTTCAGCTAAGGGTTG+TGG - chr8_1:5303708-5303727 Msa1174220:CDS 35.0%
GTTCTTACCTTCTTTATGGA+TGG + chr8_1:5303882-5303901 None:intergenic 35.0%
CATGGTTCTTACCTTCTTTA+TGG + chr8_1:5303886-5303905 None:intergenic 35.0%
! ATGCACTATCGACTATTGAA+AGG + chr8_1:5304080-5304099 None:intergenic 35.0%
TGCATGAGGCAAGAAAAAAA+TGG - chr8_1:5304224-5304243 Msa1174220:intron 35.0%
! AAGAGGTATAATGCTTACTC+TGG - chr8_1:5304259-5304278 Msa1174220:intron 35.0%
GTGAACTTAGTCAGATAAGT+AGG - chr8_1:5304281-5304300 Msa1174220:intron 35.0%
AAATTGAAATTCCCAAGCCA+AGG - chr8_1:5304400-5304419 Msa1174220:intron 35.0%
CTTGAAAACTTTCATGACCT+TGG + chr8_1:5304420-5304439 None:intergenic 35.0%
!! AGGTCATGAAAGTTTTCAAG+AGG - chr8_1:5304420-5304439 Msa1174220:intron 35.0%
AGGAACCTTTCAATGGAAAT+TGG - chr8_1:5304478-5304497 Msa1174220:intron 35.0%
!! GTTGTAGTTGATGATGGTTT+AGG - chr8_1:5304577-5304596 Msa1174220:intron 35.0%
CACAATCACATGCTGTTAAA+AGG - chr8_1:5304731-5304750 Msa1174220:CDS 35.0%
TCACATGCTGTTAAAAGGAT+AGG - chr8_1:5304736-5304755 Msa1174220:CDS 35.0%
!!! CTCTAAGATTTTGAATGCTG+AGG + chr8_1:5304950-5304969 None:intergenic 35.0%
AAATCTTAGAGATGGAACTC+TGG - chr8_1:5304959-5304978 Msa1174220:CDS 35.0%
CTATATTCTTTCAGGCTTGT+GGG - chr8_1:5304998-5305017 Msa1174220:CDS 35.0%
! CAAAGCTTCTTTTGGACTAA+TGG - chr8_1:5305244-5305263 Msa1174220:CDS 35.0%
CGAAAACAGGTTCTGTTACT+TGG + chr8_1:5303167-5303186 None:intergenic 40.0%
TTTCTTGGAGCATGTTGATG+AGG + chr8_1:5303528-5303547 None:intergenic 40.0%
ACAACAACCTAGCACCAAAT+TGG - chr8_1:5303563-5303582 Msa1174220:intron 40.0%
!! TCACTAACCAATTTGGTGCT+AGG + chr8_1:5303573-5303592 None:intergenic 40.0%
TAGCACCAAATTGGTTAGTG+AGG - chr8_1:5303572-5303591 Msa1174220:CDS 40.0%
!! TCTTGGTATTGACACGTGTA+TGG + chr8_1:5303642-5303661 None:intergenic 40.0%
TCCAATGCCTGACACAAAAA+TGG - chr8_1:5303776-5303795 Msa1174220:CDS 40.0%
!! TCCATTTTTGTGTCAGGCAT+TGG + chr8_1:5303780-5303799 None:intergenic 40.0%
!! TGGTTCTCCATTTTTGTGTC+AGG + chr8_1:5303786-5303805 None:intergenic 40.0%
! GTTAGGCTTTTCAACCTCAT+AGG + chr8_1:5303826-5303845 None:intergenic 40.0%
ATCAGGTCCATCCATAAAGA+AGG - chr8_1:5303872-5303891 Msa1174220:CDS 40.0%
CACTCAGTGTTGTCAAATAG+CGG - chr8_1:5303940-5303959 Msa1174220:CDS 40.0%
CAAGTAAGAATCTTTCCTGC+AGG - chr8_1:5304147-5304166 Msa1174220:CDS 40.0%
TTTCTTGCCTCATGCATATC+TGG + chr8_1:5304220-5304239 None:intergenic 40.0%
AATGGACGAGTGAATCAAAG+AGG - chr8_1:5304242-5304261 Msa1174220:intron 40.0%
GTAGGATCTCTTCATTTCGT+CGG - chr8_1:5304299-5304318 Msa1174220:intron 40.0%
AACTTTCATGACCTTGGCTT+GGG + chr8_1:5304414-5304433 None:intergenic 40.0%
AAACTTTCATGACCTTGGCT+TGG + chr8_1:5304415-5304434 None:intergenic 40.0%
CTTGGCCAATTTCCATTGAA+AGG + chr8_1:5304486-5304505 None:intergenic 40.0%
GTGCAAAGCTCATTTGACAA+AGG - chr8_1:5304526-5304545 Msa1174220:intron 40.0%
CCACAAGCCTGAAAGAATAT+AGG + chr8_1:5305000-5305019 None:intergenic 40.0%
CCTATATTCTTTCAGGCTTG+TGG - chr8_1:5304997-5305016 Msa1174220:CDS 40.0%
AGGCTTGTGGGACTAAATAT+TGG - chr8_1:5305010-5305029 Msa1174220:CDS 40.0%
TCTTAAAATTGAGCCCTGAC+AGG - chr8_1:5305139-5305158 Msa1174220:CDS 40.0%
TGGACTAATGGTACCTTCAA+TGG - chr8_1:5305256-5305275 Msa1174220:CDS 40.0%
CGAAAACAGGTTCTGTTACT+TGG + chr8_1:5303167-5303186 None:intergenic 40.0%
TTTCTTGGAGCATGTTGATG+AGG + chr8_1:5303528-5303547 None:intergenic 40.0%
ACAACAACCTAGCACCAAAT+TGG - chr8_1:5303563-5303582 Msa1174220:intron 40.0%
!! TCACTAACCAATTTGGTGCT+AGG + chr8_1:5303573-5303592 None:intergenic 40.0%
TAGCACCAAATTGGTTAGTG+AGG - chr8_1:5303572-5303591 Msa1174220:CDS 40.0%
!! TCTTGGTATTGACACGTGTA+TGG + chr8_1:5303642-5303661 None:intergenic 40.0%
TCCAATGCCTGACACAAAAA+TGG - chr8_1:5303776-5303795 Msa1174220:CDS 40.0%
!! TCCATTTTTGTGTCAGGCAT+TGG + chr8_1:5303780-5303799 None:intergenic 40.0%
!! TGGTTCTCCATTTTTGTGTC+AGG + chr8_1:5303786-5303805 None:intergenic 40.0%
! GTTAGGCTTTTCAACCTCAT+AGG + chr8_1:5303826-5303845 None:intergenic 40.0%
ATCAGGTCCATCCATAAAGA+AGG - chr8_1:5303872-5303891 Msa1174220:CDS 40.0%
CACTCAGTGTTGTCAAATAG+CGG - chr8_1:5303940-5303959 Msa1174220:CDS 40.0%
CAAGTAAGAATCTTTCCTGC+AGG - chr8_1:5304147-5304166 Msa1174220:CDS 40.0%
TTTCTTGCCTCATGCATATC+TGG + chr8_1:5304220-5304239 None:intergenic 40.0%
AATGGACGAGTGAATCAAAG+AGG - chr8_1:5304242-5304261 Msa1174220:intron 40.0%
GTAGGATCTCTTCATTTCGT+CGG - chr8_1:5304299-5304318 Msa1174220:intron 40.0%
AACTTTCATGACCTTGGCTT+GGG + chr8_1:5304414-5304433 None:intergenic 40.0%
AAACTTTCATGACCTTGGCT+TGG + chr8_1:5304415-5304434 None:intergenic 40.0%
CTTGGCCAATTTCCATTGAA+AGG + chr8_1:5304486-5304505 None:intergenic 40.0%
GTGCAAAGCTCATTTGACAA+AGG - chr8_1:5304526-5304545 Msa1174220:intron 40.0%
CCACAAGCCTGAAAGAATAT+AGG + chr8_1:5305000-5305019 None:intergenic 40.0%
CCTATATTCTTTCAGGCTTG+TGG - chr8_1:5304997-5305016 Msa1174220:CDS 40.0%
AGGCTTGTGGGACTAAATAT+TGG - chr8_1:5305010-5305029 Msa1174220:CDS 40.0%
TCTTAAAATTGAGCCCTGAC+AGG - chr8_1:5305139-5305158 Msa1174220:CDS 40.0%
TGGACTAATGGTACCTTCAA+TGG - chr8_1:5305256-5305275 Msa1174220:CDS 40.0%
! TTCAATTGGGAGCATATCCC+TGG - chr8_1:5303192-5303211 Msa1174220:three_prime_UTR 45.0%
CCTTTGCTGCAGGTAAAAAC+CGG + chr8_1:5303491-5303510 None:intergenic 45.0%
AAAGTCATAGCCTTTGCTGC+AGG + chr8_1:5303501-5303520 None:intergenic 45.0%
CACGTGTCAATACCAAGAAG+AGG - chr8_1:5303644-5303663 Msa1174220:CDS 45.0%
TGGAGAACCAAATTCCCATG+TGG - chr8_1:5303796-5303815 Msa1174220:CDS 45.0%
AGGAAGACCACATGGGAATT+TGG + chr8_1:5303806-5303825 None:intergenic 45.0%
ACCTCATAGGAAGACCACAT+GGG + chr8_1:5303813-5303832 None:intergenic 45.0%
AACCTCATAGGAAGACCACA+TGG + chr8_1:5303814-5303833 None:intergenic 45.0%
AAGAATCTTTCCTGCAGGCT+TGG - chr8_1:5304152-5304171 Msa1174220:CDS 45.0%
AGAATCTTTCCTGCAGGCTT+GGG - chr8_1:5304153-5304172 Msa1174220:CDS 45.0%
! CATATCTGGTGATGAGGCTT+CGG + chr8_1:5304206-5304225 None:intergenic 45.0%
! CTCATGCATATCTGGTGATG+AGG + chr8_1:5304212-5304231 None:intergenic 45.0%
CTCATCACCAGATATGCATG+AGG - chr8_1:5304210-5304229 Msa1174220:CDS 45.0%
ATCTCTTCATTTCGTCGGTC+AGG - chr8_1:5304304-5304323 Msa1174220:intron 45.0%
!! GCGTATCTTCTTTTCGAGGT+AGG - chr8_1:5304344-5304363 Msa1174220:intron 45.0%
TTATTCTCGGCCTGAGATTG+AGG + chr8_1:5304370-5304389 None:intergenic 45.0%
GTTGCAAGGACATGGATTCT+TGG + chr8_1:5304504-5304523 None:intergenic 45.0%
TTGCACAAGTTGCAAGGACA+TGG + chr8_1:5304512-5304531 None:intergenic 45.0%
TGAGCTTTGCACAAGTTGCA+AGG + chr8_1:5304518-5304537 None:intergenic 45.0%
! TGTTCCTCGACTCGAATACA+CGG + chr8_1:5304713-5304732 None:intergenic 45.0%
AGCATCCAGCTATAGCAAGT+GGG - chr8_1:5304768-5304787 Msa1174220:CDS 45.0%
!! TGTTTCCCACTTGCTATAGC+TGG + chr8_1:5304776-5304795 None:intergenic 45.0%
! TTCAATTGGGAGCATATCCC+TGG - chr8_1:5303192-5303211 Msa1174220:three_prime_UTR 45.0%
CCTTTGCTGCAGGTAAAAAC+CGG + chr8_1:5303491-5303510 None:intergenic 45.0%
AAAGTCATAGCCTTTGCTGC+AGG + chr8_1:5303501-5303520 None:intergenic 45.0%
CACGTGTCAATACCAAGAAG+AGG - chr8_1:5303644-5303663 Msa1174220:CDS 45.0%
TGGAGAACCAAATTCCCATG+TGG - chr8_1:5303796-5303815 Msa1174220:CDS 45.0%
AGGAAGACCACATGGGAATT+TGG + chr8_1:5303806-5303825 None:intergenic 45.0%
ACCTCATAGGAAGACCACAT+GGG + chr8_1:5303813-5303832 None:intergenic 45.0%
AACCTCATAGGAAGACCACA+TGG + chr8_1:5303814-5303833 None:intergenic 45.0%
AAGAATCTTTCCTGCAGGCT+TGG - chr8_1:5304152-5304171 Msa1174220:CDS 45.0%
AGAATCTTTCCTGCAGGCTT+GGG - chr8_1:5304153-5304172 Msa1174220:CDS 45.0%
! CATATCTGGTGATGAGGCTT+CGG + chr8_1:5304206-5304225 None:intergenic 45.0%
! CTCATGCATATCTGGTGATG+AGG + chr8_1:5304212-5304231 None:intergenic 45.0%
CTCATCACCAGATATGCATG+AGG - chr8_1:5304210-5304229 Msa1174220:CDS 45.0%
ATCTCTTCATTTCGTCGGTC+AGG - chr8_1:5304304-5304323 Msa1174220:intron 45.0%
!! GCGTATCTTCTTTTCGAGGT+AGG - chr8_1:5304344-5304363 Msa1174220:intron 45.0%
TTATTCTCGGCCTGAGATTG+AGG + chr8_1:5304370-5304389 None:intergenic 45.0%
GTTGCAAGGACATGGATTCT+TGG + chr8_1:5304504-5304523 None:intergenic 45.0%
TTGCACAAGTTGCAAGGACA+TGG + chr8_1:5304512-5304531 None:intergenic 45.0%
TGAGCTTTGCACAAGTTGCA+AGG + chr8_1:5304518-5304537 None:intergenic 45.0%
! TGTTCCTCGACTCGAATACA+CGG + chr8_1:5304713-5304732 None:intergenic 45.0%
AGCATCCAGCTATAGCAAGT+GGG - chr8_1:5304768-5304787 Msa1174220:CDS 45.0%
!! TGTTTCCCACTTGCTATAGC+TGG + chr8_1:5304776-5304795 None:intergenic 45.0%
GAGCGTCTCACAGACATAAG+AGG + chr8_1:5303048-5303067 None:intergenic 50.0%
! CCGGTTTTTACCTGCAGCAA+AGG - chr8_1:5303488-5303507 Msa1174220:intron 50.0%
TCCCATGTGGTCTTCCTATG+AGG - chr8_1:5303809-5303828 Msa1174220:CDS 50.0%
! GCTGGCGTATCTTCTTTTCG+AGG - chr8_1:5304340-5304359 Msa1174220:intron 50.0%
! TTTCAAGAGGCGCAGTCACA+AGG - chr8_1:5304433-5304452 Msa1174220:intron 50.0%
AAGGTGACTTTGGCAGTGGT+GGG + chr8_1:5304639-5304658 None:intergenic 50.0%
TCAGAAGGTGACTTTGGCAG+TGG + chr8_1:5304643-5304662 None:intergenic 50.0%
CACGACTCAGAAGGTGACTT+TGG + chr8_1:5304649-5304668 None:intergenic 50.0%
CAAAGTCACCTTCTGAGTCG+TGG - chr8_1:5304647-5304666 Msa1174220:CDS 50.0%
GAGCATCCAGCTATAGCAAG+TGG - chr8_1:5304767-5304786 Msa1174220:CDS 50.0%
! GTAATGGTGTCAGCCTGTCA+GGG + chr8_1:5305155-5305174 None:intergenic 50.0%
! TGTAATGGTGTCAGCCTGTC+AGG + chr8_1:5305156-5305175 None:intergenic 50.0%
GAGCGTCTCACAGACATAAG+AGG + chr8_1:5303048-5303067 None:intergenic 50.0%
! CCGGTTTTTACCTGCAGCAA+AGG - chr8_1:5303488-5303507 Msa1174220:intron 50.0%
TCCCATGTGGTCTTCCTATG+AGG - chr8_1:5303809-5303828 Msa1174220:CDS 50.0%
! GCTGGCGTATCTTCTTTTCG+AGG - chr8_1:5304340-5304359 Msa1174220:intron 50.0%
! TTTCAAGAGGCGCAGTCACA+AGG - chr8_1:5304433-5304452 Msa1174220:intron 50.0%
AAGGTGACTTTGGCAGTGGT+GGG + chr8_1:5304639-5304658 None:intergenic 50.0%
TCAGAAGGTGACTTTGGCAG+TGG + chr8_1:5304643-5304662 None:intergenic 50.0%
CACGACTCAGAAGGTGACTT+TGG + chr8_1:5304649-5304668 None:intergenic 50.0%
CAAAGTCACCTTCTGAGTCG+TGG - chr8_1:5304647-5304666 Msa1174220:CDS 50.0%
GAGCATCCAGCTATAGCAAG+TGG - chr8_1:5304767-5304786 Msa1174220:CDS 50.0%
! GTAATGGTGTCAGCCTGTCA+GGG + chr8_1:5305155-5305174 None:intergenic 50.0%
! TGTAATGGTGTCAGCCTGTC+AGG + chr8_1:5305156-5305175 None:intergenic 50.0%
GAATAGCATCCCAAGCCTGC+AGG + chr8_1:5304165-5304184 None:intergenic 55.0%
TCGAGGTAGGCCTCAATCTC+AGG - chr8_1:5304357-5304376 Msa1174220:intron 55.0%
! TTGGCAGTGGTGGGGAAAGA+AGG + chr8_1:5304630-5304649 None:intergenic 55.0%
AGGTGACTTTGGCAGTGGTG+GGG + chr8_1:5304638-5304657 None:intergenic 55.0%
GAAGGTGACTTTGGCAGTGG+TGG + chr8_1:5304640-5304659 None:intergenic 55.0%
CGACAAAGCCACGACTCAGA+AGG + chr8_1:5304658-5304677 None:intergenic 55.0%
CAGTCCGTGTATTCGAGTCG+AGG - chr8_1:5304706-5304725 Msa1174220:CDS 55.0%
GAATAGCATCCCAAGCCTGC+AGG + chr8_1:5304165-5304184 None:intergenic 55.0%
TCGAGGTAGGCCTCAATCTC+AGG - chr8_1:5304357-5304376 Msa1174220:intron 55.0%
! TTGGCAGTGGTGGGGAAAGA+AGG + chr8_1:5304630-5304649 None:intergenic 55.0%
AGGTGACTTTGGCAGTGGTG+GGG + chr8_1:5304638-5304657 None:intergenic 55.0%
GAAGGTGACTTTGGCAGTGG+TGG + chr8_1:5304640-5304659 None:intergenic 55.0%
CGACAAAGCCACGACTCAGA+AGG + chr8_1:5304658-5304677 None:intergenic 55.0%
CAGTCCGTGTATTCGAGTCG+AGG - chr8_1:5304706-5304725 Msa1174220:CDS 55.0%
TCAGGAGCTGCTGCTGCTGC+TGG - chr8_1:5304322-5304341 Msa1174220:intron 65.0%
TCAGGAGCTGCTGCTGCTGC+TGG - chr8_1:5304322-5304341 Msa1174220:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5303012 5305397 5303012 ID=Msa1174220;Name=Msa1174220
chr8_1 mRNA 5303012 5305397 5303012 ID=Msa1174220-mRNA-1;Parent=Msa1174220;Name=Msa1174220-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.5|0.66|1|0.5|0.66|3|430|510
chr8_1 exon 5303012 5303480 5303012 ID=Msa1174220-mRNA-1:exon:1798;Parent=Msa1174220-mRNA-1
chr8_1 exon 5303566 5304240 5303566 ID=Msa1174220-mRNA-1:exon:1797;Parent=Msa1174220-mRNA-1
chr8_1 exon 5304579 5305397 5304579 ID=Msa1174220-mRNA-1:exon:1796;Parent=Msa1174220-mRNA-1
chr8_1 CDS 5304579 5305397 5304579 ID=Msa1174220-mRNA-1:cds;Parent=Msa1174220-mRNA-1
chr8_1 CDS 5303566 5304240 5303566 ID=Msa1174220-mRNA-1:cds;Parent=Msa1174220-mRNA-1
chr8_1 CDS 5303442 5303480 5303442 ID=Msa1174220-mRNA-1:cds;Parent=Msa1174220-mRNA-1
chr8_1 three_prime_UTR 5303012 5303441 5303012 ID=Msa1174220-mRNA-1:three_prime_utr;Parent=Msa1174220-mRNA-1
Gene Sequence

>Msa1174220

ATGATGAATGAAGGGAAATTGAATATTAATGCTCCTCTTATGTCTGTGAGACGCTCTATTTGTACACCAACATCTTCAACTGAAGCAAAGATCAAGATATTAGATAATTCAGCACATTCTCTTCAATACAATAAATCAGACATGACTCAAGACCAAGTAACAGAACCTGTTTTCGTGTCTTTCAATTGGGAGCATATCCCTGGTAAATCTAAACTTGATAACAAGGTTAGGTCCTCAAGTAAATCGAATTCTTTAAGTGACATTATGAATAAAGTAGATCATGACAAAGGACAAAAAAATGAAAAGCTACAGAATTTGGAAGAGGGTGACGACGACGACGATGATGCTTTTTCAGATGCCTTAGAAACACTGTCTTCAACAGAATCATTATGTGTAAGCGGTTTGGATAATTTGGATGCAAACAAGTGTAGAATCTCTTCTACTGATGATAAACAAGCTCAAGAATTCATGATGAACCGGTTTTTACCTGCAGCAAAGGCTATGACTTTACAACCTCATCAACATGCTCCAAGAAAACAATCTGTTCTGTTACAACAACCTAGCACCAAATTGGTTAGTGAGGAAAAGAACTCTTTTGTTAACAATAGAAATATCATTGACATTGTACCATACACGTGTCAATACCAAGAAGAGGAAGAAGAAGAAAGTGATCATGATGAAACTGATGATTATGCAAATATTTCAGCTAAGGGTTGTGGATTATTTCCTAGTTCATGCATTAAGAATTCCTTGTGTTTATTAAATCCAATGCCTGACACAAAAATGGAGAACCAAATTCCCATGTGGTCTTCCTATGAGGCTTGGGATGCTATTCATAAAAACAAATCAAGCTCCGAAGCCTCATCACCAGATATGCATGAGGCAAGAAAAAAATGGACGAGTGAATCAAAGAGGTATAATGCTTACTCTGGTGAACTTAGTCAGATAAGTAGGATCTCTTCATTTCGTCGGTCAGGAGCTGCTGCTGCTGCTGGCGTATCTTCTTTTCGAGGTAGGCCTCAATCTCAGGCCGAGAATAACCAAATTAGAAAATTGAAATTCCCAAGCCAAGGTCATGAAAGTTTTCAAGAGGCGCAGTCACAAGGATCCAAAAGAAGTTCAAATTCAAGGAACCTTTCAATGGAAATTGGCCAAGAATCCATGTCCTTGCAACTTGTGCAAAGCTCATTTGACAAAGGTACAAAGTTTAACAACAACAAGCAAATTGTTGTAGTTGATGATGGTTTAGGAAAAAGTGATGCTAAAAGTGTTATGCACCTTCTTTCCCCACCACTGCCAAAGTCACCTTCTGAGTCGTGGCTTTGTCGTGCATTGCCTTTAGTTTCTTTGAAGAATCAGTCCGTGTATTCGAGTCGAGGAACACAATCACATGCTGTTAAAAGGATAGGATATAGTAGAGCATCCAGCTATAGCAAGTGGGAAACAATAGTGAAAACTTCAAATTTGCATCATGATCATGATTTCTGTTCTAAGGAACTAACCTTATATAAACCTCAGCATTCAAAATCTTAG
Protein sequence

>Msa1174220

MMNEGKLNINAPLMSVRRSICTPTSSTEAKIKILDNSAHSLQYNKSDMTQDQVTEPVFVSFNWEHIPGKSKLDNKVRSSSKSNSLSDIMNKVDHDKGQKNEKLQNLEEGDDDDDDAFSDALETLSSTESLCVSGLDNLDANKCRISSTDDKQAQEFMMNRFLPAAKAMTLQPHQHAPRKQSVLLQQPSTKLVSEEKNSFVNNRNIIDIVPYTCQYQEEEEEESDHDETDDYANISAKGCGLFPSSCIKNSLCLLNPMPDTKMENQIPMWSSYEAWDAIHKNKSSSEASSPDMHEARKKWTSESKRYNAYSGELSQISRISSFRRSGAAAAAGVSSFRGRPQSQAENNQIRKLKFPSQGHESFQEAQSQGSKRSSNSRNLSMEIGQESMSLQLVQSSFDKGTKFNNNKQIVVVDDGLGKSDAKSVMHLLSPPLPKSPSESWLCRALPLVSLKNQSVYSSRGTQSHAVKRIGYSRASSYSKWETIVKTSNLHHDHDFCSKELTLYKPQHSKS*