Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565400 | XP_003629905.1 | 88.988 | 563 | 14 | 4 | 1 | 515 | 1 | 563 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565400 | G7L824 | 88.988 | 563 | 14 | 4 | 1 | 515 | 1 | 563 | 0.0 | 981 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0565400 | Msa0622190 | 0.816464 | 5.455310e-52 | -8.615850e-47 |
| Msa0565400 | Msa0868610 | 0.806762 | 7.028987e-50 | -8.615850e-47 |
| Msa0565400 | Msa1117740 | 0.829825 | 4.145124e-55 | -8.615850e-47 |
| Msa0565400 | Msa1304870 | 0.826857 | 2.154456e-54 | -8.615850e-47 |
| Msa0565400 | Msa1377960 | 0.821662 | 3.583698e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565400 | MtrunA17_Chr8g0380271 | 88.988 | 563 | 14 | 4 | 1 | 515 | 1 | 563 | 0.0 | 981 |
| Msa0565400 | MtrunA17_Chr3g0096441 | 28.676 | 408 | 205 | 16 | 18 | 392 | 23 | 377 | 5.58e-21 | 97.1 |
| Msa0565400 | MtrunA17_Chr8g0343521 | 40.323 | 124 | 61 | 3 | 4 | 127 | 6 | 116 | 9.62e-17 | 84.0 |
| Msa0565400 | MtrunA17_Chr5g0429151 | 50.685 | 73 | 33 | 1 | 18 | 87 | 10 | 82 | 1.56e-16 | 83.2 |
| Msa0565400 | MtrunA17_Chr5g0446841 | 40.000 | 100 | 58 | 2 | 18 | 115 | 16 | 115 | 5.23e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565400 | AT1G29350.1 | 39.892 | 554 | 240 | 23 | 2 | 514 | 3 | 504 | 4.44e-72 | 246 |
| Msa0565400 | AT1G29370.1 | 39.891 | 549 | 247 | 23 | 2 | 514 | 3 | 504 | 5.67e-72 | 245 |
| Msa0565400 | AT4G18150.1 | 33.771 | 533 | 270 | 23 | 6 | 514 | 3 | 476 | 2.14e-48 | 179 |
| Msa0565400 | AT1G29370.2 | 33.947 | 380 | 190 | 16 | 161 | 514 | 20 | 364 | 4.55e-33 | 134 |
| Msa0565400 | AT5G46380.2 | 50.000 | 96 | 42 | 3 | 15 | 105 | 63 | 157 | 1.16e-17 | 87.0 |
| Msa0565400 | AT5G46380.1 | 50.000 | 96 | 42 | 3 | 15 | 105 | 8 | 102 | 1.24e-17 | 86.7 |
| Msa0565400 | AT3G13990.2 | 47.500 | 80 | 42 | 0 | 5 | 84 | 2 | 81 | 1.08e-15 | 80.9 |
| Msa0565400 | AT3G13990.1 | 47.500 | 80 | 42 | 0 | 5 | 84 | 2 | 81 | 1.08e-15 | 80.9 |
| Msa0565400 | AT3G07660.1 | 54.286 | 70 | 28 | 2 | 18 | 83 | 10 | 79 | 2.18e-15 | 79.7 |
Find 165 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAATCCCGACTATTA+TGG | 0.197232 | 4_1:-66278696 | Msa0565400:intron |
| TTTGTATAATACTCAGAATT+TGG | 0.210938 | 4_1:+66279742 | None:intergenic |
| TGCATTGGTCTGTTAGATTT+TGG | 0.216597 | 4_1:-66278407 | Msa0565400:CDS |
| ATATTCCTTTCAGCTGAAAA+TGG | 0.278424 | 4_1:-66279062 | Msa0565400:intron |
| GATAATCCAGGAACTGCTTC+TGG | 0.289516 | 4_1:-66279583 | Msa0565400:CDS |
| TACTCCGATCCCCTCGAGTT+AGG | 0.296450 | 4_1:+66281986 | None:intergenic |
| ACATACCATTATTACTGAAT+TGG | 0.309599 | 4_1:+66280986 | None:intergenic |
| GCTACTGATGTTTCAGCAAT+TGG | 0.311438 | 4_1:-66278805 | Msa0565400:CDS |
| CTCCTCCAAGTTACTTTGTA+AGG | 0.312134 | 4_1:+66278837 | None:intergenic |
| CCCGTGTTTAAGAAAGAAAA+TGG | 0.342626 | 4_1:-66280690 | Msa0565400:CDS |
| GCAGAAATCCCGACTATTAT+GGG | 0.344135 | 4_1:-66278695 | Msa0565400:intron |
| GACTAAAACACTCTGGAGTA+TGG | 0.347028 | 4_1:+66278928 | None:intergenic |
| TCATCACTCTGTTGAACATT+GGG | 0.349769 | 4_1:+66279811 | None:intergenic |
| AGTAACTTGGAGGAGACTTC+TGG | 0.354552 | 4_1:-66278829 | Msa0565400:CDS |
| GAAAATGGAACGCCTGCTTA+TGG | 0.359441 | 4_1:-66280675 | Msa0565400:CDS |
| TGAACATTGGGTTCAATAGA+AGG | 0.361624 | 4_1:+66279862 | None:intergenic |
| TCGAACCAATTCAGTAATAA+TGG | 0.363650 | 4_1:-66280991 | Msa0565400:intron |
| GTATGGAGTTGTAGGTGATT+TGG | 0.365100 | 4_1:+66278945 | None:intergenic |
| CCACTGTGGACAGAAGATTT+AGG | 0.371116 | 4_1:+66279961 | None:intergenic |
| TCATCACTCTGTTGAACATT+GGG | 0.374072 | 4_1:+66279850 | None:intergenic |
| TCATATCCAGAAGCAGTTCC+TGG | 0.381408 | 4_1:+66279577 | None:intergenic |
| ACATAACATAGCTATCAAAA+AGG | 0.381591 | 4_1:-66282243 | Msa0565400:five_prime_UTR |
| GTGGCATAGATCTCGTTATC+AGG | 0.387328 | 4_1:+66281852 | None:intergenic |
| GTTTATCTCTTTATTTATAG+AGG | 0.398476 | 4_1:+66282283 | None:intergenic |
| ACCGGCGGCGAGTCGGAAAA+TGG | 0.402820 | 4_1:-66281907 | Msa0565400:CDS |
| GGCAATATATCCCACATAAC+TGG | 0.405437 | 4_1:-66278645 | Msa0565400:CDS |
| TAAACACGGGTTTACTCTGC+TGG | 0.406086 | 4_1:+66280703 | None:intergenic |
| TAAAGCCTCTGGTTGTGAAA+TGG | 0.415654 | 4_1:+66278593 | None:intergenic |
| GAATGAGGATATGCAACTTC+TGG | 0.418587 | 4_1:+66278483 | None:intergenic |
| ATATGCAACTTCTGGTTGTT+GGG | 0.418891 | 4_1:+66278491 | None:intergenic |
| TGGAGAAGGGAGATAGGTTC+TGG | 0.424665 | 4_1:+66278442 | None:intergenic |
| TAAGGATGAGCGGTAAAGTA+GGG | 0.424736 | 4_1:-66281965 | Msa0565400:exon |
| GGTTCAGACTTTAAAGCCTC+TGG | 0.425019 | 4_1:+66278582 | None:intergenic |
| ATCATCGTTGTCGGGTATAC+CGG | 0.425443 | 4_1:-66281925 | Msa0565400:CDS |
| AGACGACTAACAGCTTCGTT+AGG | 0.434553 | 4_1:+66281807 | None:intergenic |
| ACTCCGATCCCCTCGAGTTA+GGG | 0.435939 | 4_1:+66281987 | None:intergenic |
| ACTCTGGAGTATGGAGTTGT+AGG | 0.436906 | 4_1:+66278937 | None:intergenic |
| CCGAGTCGCGGCGGCGGTGG+TGG | 0.440407 | 4_1:-66281063 | Msa0565400:CDS |
| TATAATACTCAGAATTTGGA+TGG | 0.442532 | 4_1:+66279746 | None:intergenic |
| GAAGCAGATCCAACATCAAC+AGG | 0.444671 | 4_1:+66279631 | None:intergenic |
| TGATGGACAATAATGTAAAC+AGG | 0.450601 | 4_1:-66280623 | Msa0565400:CDS |
| TGAACATTGGGGTCAATAGA+AGG | 0.454561 | 4_1:+66279823 | None:intergenic |
| ATTATATCTGATGATAATCC+AGG | 0.457309 | 4_1:-66279595 | Msa0565400:CDS |
| AACTCGAGGGGATCGGAGTA+AGG | 0.457374 | 4_1:-66281983 | Msa0565400:five_prime_UTR |
| ATACCGAGTCGCGGCGGCGG+TGG | 0.457632 | 4_1:-66281066 | Msa0565400:CDS |
| CTACTGATGTTTCAGCAATT+GGG | 0.460752 | 4_1:-66278804 | Msa0565400:CDS |
| GTCGCGGCGGCGGTGGTGGT+AGG | 0.468646 | 4_1:-66281059 | Msa0565400:CDS |
| GGCGGCGGTGGTGGTAGGAC+TGG | 0.471364 | 4_1:-66281054 | Msa0565400:CDS |
| TTCATCACTCTGTTGAACAT+TGG | 0.471449 | 4_1:+66279849 | None:intergenic |
| TTATACAAATACATCTAACT+TGG | 0.471805 | 4_1:-66279728 | Msa0565400:CDS |
| TTGCTCTTAACCTCATGAAA+AGG | 0.472617 | 4_1:+66281677 | None:intergenic |
| CGCCACCACGGCCAGCATAT+CGG | 0.484251 | 4_1:+66281025 | None:intergenic |
| TTCATCACTCTGTTGAACAT+TGG | 0.484635 | 4_1:+66279810 | None:intergenic |
| GTTAGTCGTCTTCTTTCTCA+AGG | 0.485543 | 4_1:-66281795 | Msa0565400:intron |
| TTACACTGGAGAAGGGAGAT+AGG | 0.487511 | 4_1:+66278436 | None:intergenic |
| ACATCAGAATTGTCCTCCTC+TGG | 0.487648 | 4_1:+66278975 | None:intergenic |
| AGATTTAGGCACGGATGCCT+TGG | 0.488437 | 4_1:+66279975 | None:intergenic |
| GTAAGGATGAGCGGTAAAGT+AGG | 0.493616 | 4_1:-66281966 | Msa0565400:exon |
| CCACCACCGCCGCCGCGACT+CGG | 0.494335 | 4_1:+66281063 | None:intergenic |
| GATATGCAACTTCTGGTTGT+TGG | 0.498257 | 4_1:+66278490 | None:intergenic |
| GAGCCCAGGTCAAGTGTCAA+TGG | 0.500187 | 4_1:-66280028 | Msa0565400:CDS |
| ACATAACTGGTGTGGATGCT+AGG | 0.500709 | 4_1:-66278632 | Msa0565400:CDS |
| TCAGCCATTGACACTTGACC+TGG | 0.501383 | 4_1:+66280024 | None:intergenic |
| TGCTCATCCCCATAATAGTC+GGG | 0.501814 | 4_1:+66278687 | None:intergenic |
| AGGTACATCATCATCGTTGT+CGG | 0.502101 | 4_1:-66281934 | Msa0565400:CDS |
| TCTGCATGGTCGGCGAGCCC+AGG | 0.502549 | 4_1:-66280042 | Msa0565400:CDS |
| TAGCATCCACACCAGTTATG+TGG | 0.502709 | 4_1:+66278634 | None:intergenic |
| GGCACGGATGCCTTGGCCTG+TGG | 0.503151 | 4_1:+66279982 | None:intergenic |
| TAGGCCCTTACAAAGTAACT+TGG | 0.504725 | 4_1:-66278842 | Msa0565400:CDS |
| TAAACAGGCAGCCACCATCT+TGG | 0.509603 | 4_1:-66280608 | Msa0565400:CDS |
| AAGTTGTGATGCGAGGCTGC+TGG | 0.511504 | 4_1:+66279913 | None:intergenic |
| TGAACCCTCTGAAACTGCTC+AGG | 0.513104 | 4_1:-66278565 | Msa0565400:CDS |
| TTCTGTTGCAGTGATTCTGT+TGG | 0.513872 | 4_1:-66280111 | Msa0565400:intron |
| CGATATGCTGGCCGTGGTGG+CGG | 0.514178 | 4_1:-66281024 | Msa0565400:CDS |
| TGTGAGCTTGCTTGTGAATG+AGG | 0.515023 | 4_1:+66278468 | None:intergenic |
| GTGGAGGAGCCTCCATAAGC+AGG | 0.516664 | 4_1:+66280663 | None:intergenic |
| GATGGGTAGGCCACAGGCCA+AGG | 0.517499 | 4_1:-66279992 | Msa0565400:CDS |
| ATCTCCCTTCTCCAGTGTAA+TGG | 0.521345 | 4_1:-66278433 | Msa0565400:CDS |
| TTACTGAAGCAAATAATGAA+TGG | 0.524202 | 4_1:-66279885 | Msa0565400:CDS |
| GACGACTAACAGCTTCGTTA+GGG | 0.524337 | 4_1:+66281808 | None:intergenic |
| CATTACCATTACACTGGAGA+AGG | 0.529209 | 4_1:+66278428 | None:intergenic |
| GCCCTTACAAAGTAACTTGG+AGG | 0.530352 | 4_1:-66278839 | Msa0565400:CDS |
| ACTGGTAGTGACCGATATGC+TGG | 0.533784 | 4_1:-66281036 | Msa0565400:CDS |
| CGGGTATACCGGCGGCGAGT+CGG | 0.537690 | 4_1:-66281914 | Msa0565400:CDS |
| TAATTACTCCCACGTGACCT+TGG | 0.540089 | 4_1:+66281093 | None:intergenic |
| GGTACATCATCATCGTTGTC+GGG | 0.541357 | 4_1:-66281933 | Msa0565400:CDS |
| TATGCTGGCCGTGGTGGCGG+TGG | 0.541966 | 4_1:-66281021 | Msa0565400:CDS |
| GTAAACTCATGCGAAGATGA+AGG | 0.543874 | 4_1:+66278525 | None:intergenic |
| TCCTCCAAGTTACTTTGTAA+GGG | 0.545463 | 4_1:+66278838 | None:intergenic |
| ATGCTCATCCCCATAATAGT+CGG | 0.545903 | 4_1:+66278686 | None:intergenic |
| CAGCTACAAATTCATTTCCG+TGG | 0.549215 | 4_1:+66279680 | None:intergenic |
| TGTCAAGATGGGTAGGCCAC+AGG | 0.551390 | 4_1:-66279998 | Msa0565400:CDS |
| AACTTGCACCACCGCCACCA+CGG | 0.554060 | 4_1:+66281013 | None:intergenic |
| GAACCCTAACTCGAGGGGAT+CGG | 0.554891 | 4_1:-66281990 | Msa0565400:five_prime_UTR |
| TTCTTCCATTTCACAACCAG+AGG | 0.555873 | 4_1:-66278598 | Msa0565400:CDS |
| AACCACATACTTGGCATCTG+AGG | 0.563576 | 4_1:+66278780 | None:intergenic |
| AAAGATAAATACCTCCAAGA+TGG | 0.563649 | 4_1:+66280594 | None:intergenic |
| GTCTTATGCATCTAGTGTGA+TGG | 0.563807 | 4_1:-66280640 | Msa0565400:CDS |
| ACAGGCAGCCACCATCTTGG+AGG | 0.569197 | 4_1:-66280605 | Msa0565400:intron |
| GTAGAGATAAGTATTGTGAT+CGG | 0.576105 | 4_1:-66282022 | Msa0565400:five_prime_UTR |
| AATATACCGAGTCGCGGCGG+CGG | 0.576843 | 4_1:-66281069 | Msa0565400:CDS |
| AATGGCTGACATTGTCAAGA+TGG | 0.577715 | 4_1:-66280010 | Msa0565400:CDS |
| ATGTTCAACAGAGTGATGAA+TGG | 0.579550 | 4_1:-66279807 | Msa0565400:CDS |
| ATGTTCAACAGAGTGATGAA+TGG | 0.579550 | 4_1:-66279846 | Msa0565400:CDS |
| CCAGTGTAATGGTAATGCAT+TGG | 0.583162 | 4_1:-66278422 | Msa0565400:CDS |
| GATGAGAATCCTGTTGATGT+TGG | 0.584695 | 4_1:-66279640 | Msa0565400:CDS |
| AGCATCCACACCAGTTATGT+GGG | 0.586141 | 4_1:+66278635 | None:intergenic |
| ATGGCTGACATTGTCAAGAT+GGG | 0.587015 | 4_1:-66280009 | Msa0565400:CDS |
| CTGTCTTCATCATCACATCA+TGG | 0.587021 | 4_1:-66280075 | Msa0565400:CDS |
| AGAGATAGAAAACACGAAGA+GGG | 0.588714 | 4_1:-66282106 | Msa0565400:five_prime_UTR |
| CATGTTACAGTCTTTGAGAG+TGG | 0.592942 | 4_1:+66281833 | None:intergenic |
| GATAAATACCTCCAAGATGG+TGG | 0.593978 | 4_1:+66280597 | None:intergenic |
| TATACAAATACATCTAACTT+GGG | 0.595181 | 4_1:-66279727 | Msa0565400:CDS |
| CATATTGCTACTACCTCAGA+TGG | 0.595267 | 4_1:-66278666 | Msa0565400:CDS |
| CATCAACAACAACTGTTGGT+GGG | 0.601667 | 4_1:+66279770 | None:intergenic |
| CTAAATCTTCTGTCCACAGT+GGG | 0.603435 | 4_1:-66279960 | Msa0565400:CDS |
| GTTGGTGGGTGCTCAACAGA+AGG | 0.604734 | 4_1:+66279784 | None:intergenic |
| AATGGAACGCCTGCTTATGG+AGG | 0.606529 | 4_1:-66280672 | Msa0565400:CDS |
| CCTAAATCTTCTGTCCACAG+TGG | 0.609597 | 4_1:-66279961 | Msa0565400:CDS |
| ATAATACTCAGAATTTGGAT+GGG | 0.610849 | 4_1:+66279747 | None:intergenic |
| ACAACAGAACCAAGGTCACG+TGG | 0.611217 | 4_1:-66281102 | Msa0565400:CDS |
| TATATCCCACATAACTGGTG+TGG | 0.611883 | 4_1:-66278640 | Msa0565400:CDS |
| GAGAGATAGAAAACACGAAG+AGG | 0.613579 | 4_1:-66282107 | Msa0565400:five_prime_UTR |
| AGTGACCGATATGCTGGCCG+TGG | 0.613894 | 4_1:-66281030 | Msa0565400:CDS |
| TGCGGCGGAACCCTAACTCG+AGG | 0.614193 | 4_1:-66281997 | Msa0565400:five_prime_UTR |
| AATTTACACACAGATGAGCA+AGG | 0.615714 | 4_1:-66279005 | Msa0565400:CDS |
| CCAATGCATTACCATTACAC+TGG | 0.615927 | 4_1:+66278422 | None:intergenic |
| GCGGCGGAACCCTAACTCGA+GGG | 0.616023 | 4_1:-66281996 | Msa0565400:five_prime_UTR |
| TGAGCAAGGGACAGAACCAG+AGG | 0.616906 | 4_1:-66278991 | Msa0565400:CDS |
| CTGACATTGTCAAGATGGGT+AGG | 0.617049 | 4_1:-66280005 | Msa0565400:CDS |
| GCATCAACAACAACTGTTGG+TGG | 0.620968 | 4_1:+66279769 | None:intergenic |
| AACATTCAAGTTGTGATGCG+AGG | 0.621627 | 4_1:+66279906 | None:intergenic |
| CAGCCATTGACACTTGACCT+GGG | 0.622423 | 4_1:+66280025 | None:intergenic |
| TGGGCATCAACAACAACTGT+TGG | 0.624347 | 4_1:+66279766 | None:intergenic |
| CACACTAGATGCATAAGACG+TGG | 0.629917 | 4_1:+66280644 | None:intergenic |
| TGGATTGCAATCTGCATGGT+CGG | 0.630287 | 4_1:-66280052 | Msa0565400:CDS |
| GTGGGATATATTGCCATCTG+AGG | 0.632746 | 4_1:+66278653 | None:intergenic |
| GATTCTGTTGGTGTCCATGA+CGG | 0.634224 | 4_1:-66280099 | Msa0565400:CDS |
| GACCGATATGCTGGCCGTGG+TGG | 0.634825 | 4_1:-66281027 | Msa0565400:CDS |
| TAAGTATTGTGATCGGAGTG+CGG | 0.635793 | 4_1:-66282015 | Msa0565400:five_prime_UTR |
| AGCTGAAGACAGTTCTGTTG+AGG | 0.637818 | 4_1:-66279662 | Msa0565400:CDS |
| TGAAAATGGTGTTTCATCAG+TGG | 0.638285 | 4_1:-66279048 | Msa0565400:CDS |
| AAGGATGAGCGGTAAAGTAG+GGG | 0.640198 | 4_1:-66281964 | Msa0565400:exon |
| GCAAGGGACAGAACCAGAGG+AGG | 0.642696 | 4_1:-66278988 | Msa0565400:CDS |
| ATGATGAAGACAGTCCGTCA+TGG | 0.643081 | 4_1:+66280085 | None:intergenic |
| CGGCGGAACCCTAACTCGAG+GGG | 0.647175 | 4_1:-66281995 | Msa0565400:five_prime_UTR |
| CAGAAATCCCGACTATTATG+GGG | 0.649539 | 4_1:-66278694 | Msa0565400:CDS |
| ATTTACACACAGATGAGCAA+GGG | 0.649851 | 4_1:-66279004 | Msa0565400:CDS |
| ATCGTTGTCGGGTATACCGG+CGG | 0.650301 | 4_1:-66281922 | Msa0565400:CDS |
| CACTCTCAAAGACTGTAACA+TGG | 0.656952 | 4_1:-66281832 | Msa0565400:CDS |
| ATTACCATTACACTGGAGAA+GGG | 0.657757 | 4_1:+66278429 | None:intergenic |
| CATCACTCTGTTGAACATTG+GGG | 0.665234 | 4_1:+66279812 | None:intergenic |
| TATAATATACCGAGTCGCGG+CGG | 0.665825 | 4_1:-66281072 | Msa0565400:CDS |
| AATAGACAACTGCAGAACCA+CGG | 0.668240 | 4_1:-66279697 | Msa0565400:CDS |
| AGGATGAGCGGTAAAGTAGG+GGG | 0.679432 | 4_1:-66281963 | Msa0565400:CDS |
| CATTCTGATGATTCCCACTG+TGG | 0.681276 | 4_1:+66279947 | None:intergenic |
| GGGATCGGAGTAAGGATGAG+CGG | 0.687563 | 4_1:-66281975 | Msa0565400:exon |
| AATTATAATATACCGAGTCG+CGG | 0.693817 | 4_1:-66281075 | Msa0565400:CDS |
| GTGGACAGAAGATTTAGGCA+CGG | 0.697837 | 4_1:+66279966 | None:intergenic |
| ATGGTGGATTGCAATCTGCA+TGG | 0.698767 | 4_1:-66280056 | Msa0565400:CDS |
| TCTTCATCATCACATCATGG+TGG | 0.706000 | 4_1:-66280072 | Msa0565400:CDS |
| ACTAGATGCATAAGACGTGG+AGG | 0.713779 | 4_1:+66280647 | None:intergenic |
| CAACAGAACCAAGGTCACGT+GGG | 0.726867 | 4_1:-66281101 | Msa0565400:CDS |
| GTAAGGATACAACAGAACCA+AGG | 0.748600 | 4_1:-66281110 | Msa0565400:CDS |
| GTATTGTGATCGGAGTGCGG+CGG | 0.759279 | 4_1:-66282012 | Msa0565400:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTCTTCTTTATATT+TGG | - | chr4_1:66279525-66279544 | Msa0565400:intron | 10.0% |
| !!! | TGTTTTTTTTTTATTTGTTT+AGG | - | chr4_1:66279605-66279624 | Msa0565400:CDS | 10.0% |
| !!! | GTTTTTTTTTTATTTGTTTA+GGG | - | chr4_1:66279606-66279625 | Msa0565400:CDS | 10.0% |
| !!! | TTTTATTATTATGTATTGTC+AGG | - | chr4_1:66279150-66279169 | Msa0565400:intron | 15.0% |
| !! | TTTATTATTATGTATTGTCA+GGG | - | chr4_1:66279151-66279170 | Msa0565400:intron | 15.0% |
| !! | TAGCCAAATAATATATTAAT+GGG | + | chr4_1:66279266-66279285 | None:intergenic | 15.0% |
| !!! | ATCATTTAAAGCAAATTTTA+TGG | + | chr4_1:66281294-66281313 | None:intergenic | 15.0% |
| !!! | GTTTGTACATTATTATTTTA+TGG | - | chr4_1:66281371-66281390 | Msa0565400:intron | 15.0% |
| !!! | TGAAGCAAATTTTTTATTAC+TGG | - | chr4_1:66278416-66278435 | Msa0565400:CDS | 20.0% |
| !!! | GTTTATCTCTTTATTTATAG+AGG | + | chr4_1:66278458-66278477 | None:intergenic | 20.0% |
| !! | TTATTATTATGTATTGTCAG+GGG | - | chr4_1:66279152-66279171 | Msa0565400:intron | 20.0% |
| !!! | AAAAGTATACAAATTATGCA+AGG | + | chr4_1:66279231-66279250 | None:intergenic | 20.0% |
| !! | TACCCCATTAATATATTATT+TGG | - | chr4_1:66279260-66279279 | Msa0565400:intron | 20.0% |
| !! | AGCCAAATAATATATTAATG+GGG | + | chr4_1:66279265-66279284 | None:intergenic | 20.0% |
| !! | GTAGCCAAATAATATATTAA+TGG | + | chr4_1:66279267-66279286 | None:intergenic | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | + | chr4_1:66279291-66279310 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTGTTTAGGGTA+AGG | - | chr4_1:66279611-66279630 | Msa0565400:CDS | 20.0% |
| !!! | ATGATGTTTGTTTCTATTTT+TGG | - | chr4_1:66279788-66279807 | Msa0565400:CDS | 20.0% |
| !! | TATACTAAAATAACTGTACA+TGG | - | chr4_1:66280178-66280197 | Msa0565400:intron | 20.0% |
| !!! | GAAATTAAGTTTTCAAAAAG+AGG | + | chr4_1:66280372-66280391 | None:intergenic | 20.0% |
| !! | TTAATTCTGTGAATTAGTTA+TGG | - | chr4_1:66280445-66280464 | Msa0565400:intron | 20.0% |
| !! | CTTTATAATACTTCTACATA+TGG | + | chr4_1:66280547-66280566 | None:intergenic | 20.0% |
| !! | TTTGTATAATACTCAGAATT+TGG | + | chr4_1:66280999-66281018 | None:intergenic | 20.0% |
| !! | TTATACAAATACATCTAACT+TGG | - | chr4_1:66281010-66281029 | Msa0565400:CDS | 20.0% |
| !! | TATACAAATACATCTAACTT+GGG | - | chr4_1:66281011-66281030 | Msa0565400:CDS | 20.0% |
| !! | AGTGAATTTAATTCACATAA+TGG | + | chr4_1:66281338-66281357 | None:intergenic | 20.0% |
| !! | TTCTATAACTTAGATATTTC+TGG | + | chr4_1:66281444-66281463 | None:intergenic | 20.0% |
| !!! | GGTGATATTATTATTTCTAT+TGG | - | chr4_1:66281504-66281523 | Msa0565400:intron | 20.0% |
| !! | TATCAAATAATAGCATTACA+TGG | + | chr4_1:66281598-66281617 | None:intergenic | 20.0% |
| ! | ACATAACATAGCTATCAAAA+AGG | - | chr4_1:66278495-66278514 | Msa0565400:CDS | 25.0% |
| !!! | AGTTACGATTGTTTCTTTTT+TGG | - | chr4_1:66278655-66278674 | Msa0565400:CDS | 25.0% |
| !!! | CAAGGTTTATTTTTCTTTTG+AGG | + | chr4_1:66279213-66279232 | None:intergenic | 25.0% |
| ! | ACATACCATTATTACTGAAT+TGG | + | chr4_1:66279755-66279774 | None:intergenic | 25.0% |
| !!! | AAGACTTTTTTACACTAAAG+TGG | + | chr4_1:66279863-66279882 | None:intergenic | 25.0% |
| !!! | TTAATTTTTGCCGTTGTTTT+TGG | - | chr4_1:66279995-66280014 | Msa0565400:CDS | 25.0% |
| !! | TCCATTTTCTTTCTTAAACA+CGG | + | chr4_1:66280052-66280071 | None:intergenic | 25.0% |
| ! | GGATAAAAACTAAATTCTTG+TGG | - | chr4_1:66280208-66280227 | Msa0565400:intron | 25.0% |
| !!! | ATTTTCAAGCCATATAGAAA+CGG | + | chr4_1:66280288-66280307 | None:intergenic | 25.0% |
| !! | TTATTCTTATCTAAAACAGC+TGG | - | chr4_1:66280407-66280426 | Msa0565400:intron | 25.0% |
| !! | AAATCAATAAATGCCCATTT+TGG | - | chr4_1:66280477-66280496 | Msa0565400:intron | 25.0% |
| ! | TTACATCTCATTTATCTTCA+GGG | + | chr4_1:66280505-66280524 | None:intergenic | 25.0% |
| ! | TTTACATCTCATTTATCTTC+AGG | + | chr4_1:66280506-66280525 | None:intergenic | 25.0% |
| !!! | ACTAAACAGTATTGATATGA+AGG | - | chr4_1:66280576-66280595 | Msa0565400:intron | 25.0% |
| ! | TTACTGAAGCAAATAATGAA+TGG | - | chr4_1:66280853-66280872 | Msa0565400:intron | 25.0% |
| ! | ATAATACTCAGAATTTGGAT+GGG | + | chr4_1:66280994-66281013 | None:intergenic | 25.0% |
| ! | TATAATACTCAGAATTTGGA+TGG | + | chr4_1:66280995-66281014 | None:intergenic | 25.0% |
| !!! | TCATCAGATATAATTTTAGC+AGG | + | chr4_1:66281137-66281156 | None:intergenic | 25.0% |
| ! | ATTATATCTGATGATAATCC+AGG | - | chr4_1:66281143-66281162 | Msa0565400:intron | 25.0% |
| ! | GATATGATGATAATTGTACA+AGG | - | chr4_1:66281177-66281196 | Msa0565400:intron | 25.0% |
| !! | AGCAAATTTTATGGAAAACA+TGG | + | chr4_1:66281285-66281304 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACCAACTACACA+TGG | + | chr4_1:66281402-66281421 | None:intergenic | 25.0% |
| ! | TAAGTTATAGAAATAGCACA+AGG | - | chr4_1:66281452-66281471 | Msa0565400:intron | 25.0% |
| !! | CTATTTTATAACCACATACT+TGG | + | chr4_1:66281970-66281989 | None:intergenic | 25.0% |
| ! | CAAGTATGTGGTTATAAAAT+AGG | - | chr4_1:66281968-66281987 | Msa0565400:exon | 25.0% |
| ! | GTAGAGATAAGTATTGTGAT+CGG | - | chr4_1:66278716-66278735 | Msa0565400:intron | 30.0% |
| CAAACGAGAAAAGAAAAAAG+AGG | - | chr4_1:66279081-66279100 | Msa0565400:intron | 30.0% | |
| AATTATAATATACCGAGTCG+CGG | - | chr4_1:66279663-66279682 | Msa0565400:CDS | 30.0% | |
| TCGAACCAATTCAGTAATAA+TGG | - | chr4_1:66279747-66279766 | Msa0565400:CDS | 30.0% | |
| AATGGTATGTATTTCGAATC+TGG | - | chr4_1:66279765-66279784 | Msa0565400:CDS | 30.0% | |
| AAAGTCATCAAATCGTTTCT+TGG | + | chr4_1:66279944-66279963 | None:intergenic | 30.0% | |
| AGTCTGATTTCCAAAAACAA+CGG | + | chr4_1:66280008-66280027 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGAAATCAGACTA+TGG | - | chr4_1:66280009-66280028 | Msa0565400:CDS | 30.0% |
| ! | CCATTTTCTTTCTTAAACAC+GGG | + | chr4_1:66280051-66280070 | None:intergenic | 30.0% |
| ! | TGATGGACAATAATGTAAAC+AGG | - | chr4_1:66280115-66280134 | Msa0565400:intron | 30.0% |
| AAAGATAAATACCTCCAAGA+TGG | + | chr4_1:66280147-66280166 | None:intergenic | 30.0% | |
| CTAAAATAACTGTACATGGT+TGG | - | chr4_1:66280182-66280201 | Msa0565400:intron | 30.0% | |
| TAAATCTAGCCGTTTCTATA+TGG | - | chr4_1:66280276-66280295 | Msa0565400:intron | 30.0% | |
| AAAATCCGATGCTATTGAAA+AGG | - | chr4_1:66280303-66280322 | Msa0565400:intron | 30.0% | |
| AAATCCGATGCTATTGAAAA+GGG | - | chr4_1:66280304-66280323 | Msa0565400:intron | 30.0% | |
| !!! | AACTTGCTTTTGGGATAAAT+TGG | + | chr4_1:66280335-66280354 | None:intergenic | 30.0% |
| AATTTATCCCAAAAGCAAGT+TGG | - | chr4_1:66280334-66280353 | Msa0565400:intron | 30.0% | |
| TACATCTCATTTATCTTCAG+GGG | + | chr4_1:66280504-66280523 | None:intergenic | 30.0% | |
| ATACTTCTACATATGGAAGA+GGG | + | chr4_1:66280540-66280559 | None:intergenic | 30.0% | |
| AATACTTCTACATATGGAAG+AGG | + | chr4_1:66280541-66280560 | None:intergenic | 30.0% | |
| ACTGCAACAGAATTGAATAA+TGG | + | chr4_1:66280619-66280638 | None:intergenic | 30.0% | |
| TGATCATGTAATTGAAGTGA+TGG | - | chr4_1:66281310-66281329 | Msa0565400:intron | 30.0% | |
| ATATTCCTTTCAGCTGAAAA+TGG | - | chr4_1:66281676-66281695 | Msa0565400:CDS | 30.0% | |
| !! | AGAAACAGTGCATTTTGTTT+TGG | + | chr4_1:66281856-66281875 | None:intergenic | 30.0% |
| AAAACAAAATGCACTGTTTC+TGG | - | chr4_1:66281855-66281874 | Msa0565400:CDS | 30.0% | |
| AGAGATAGAAAACACGAAGA+GGG | - | chr4_1:66278632-66278651 | Msa0565400:CDS | 35.0% | |
| AGTTAGTGATGAGAGAGAAA+GGG | + | chr4_1:66278980-66278999 | None:intergenic | 35.0% | |
| TAGTTAGTGATGAGAGAGAA+AGG | + | chr4_1:66278981-66279000 | None:intergenic | 35.0% | |
| TCTCTCATCACTAACTAGTT+AGG | - | chr4_1:66278984-66279003 | Msa0565400:CDS | 35.0% | |
| CTCTCATCACTAACTAGTTA+GGG | - | chr4_1:66278985-66279004 | Msa0565400:CDS | 35.0% | |
| ! | TCTTGTAGATCCTTTTCATG+AGG | - | chr4_1:66279051-66279070 | Msa0565400:CDS | 35.0% |
| TTGCTCTTAACCTCATGAAA+AGG | + | chr4_1:66279064-66279083 | None:intergenic | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | - | chr4_1:66279282-66279301 | Msa0565400:intron | 35.0% |
| ! | AGCTAGCACAATTTTTACGA+GGG | + | chr4_1:66279553-66279572 | None:intergenic | 35.0% |
| ! | AAGCTAGCACAATTTTTACG+AGG | + | chr4_1:66279554-66279573 | None:intergenic | 35.0% |
| TAACTCTTCACAATACACAG+CGG | + | chr4_1:66279579-66279598 | None:intergenic | 35.0% | |
| CCCGTGTTTAAGAAAGAAAA+TGG | - | chr4_1:66280048-66280067 | Msa0565400:CDS | 35.0% | |
| TCTTGTGGTTATGATGTGTT+TGG | - | chr4_1:66280223-66280242 | Msa0565400:intron | 35.0% | |
| !!! | TTGCTTTTGGGATAAATTGG+AGG | + | chr4_1:66280332-66280351 | None:intergenic | 35.0% |
| TATTGATATGAAGGCCAAGA+TGG | - | chr4_1:66280585-66280604 | Msa0565400:intron | 35.0% | |
| TAATGGTGAAACATCCATCT+TGG | + | chr4_1:66280602-66280621 | None:intergenic | 35.0% | |
| TGAACATTGGGTTCAATAGA+AGG | + | chr4_1:66280879-66280898 | None:intergenic | 35.0% | |
| TCATCACTCTGTTGAACATT+GGG | + | chr4_1:66280891-66280910 | None:intergenic | 35.0% | |
| TTCATCACTCTGTTGAACAT+TGG | + | chr4_1:66280892-66280911 | None:intergenic | 35.0% | |
| ATGTTCAACAGAGTGATGAA+TGG | - | chr4_1:66280892-66280911 | Msa0565400:intron | 35.0% | |
| TCATCACTCTGTTGAACATT+GGG | + | chr4_1:66280891-66280910 | None:intergenic | 35.0% | |
| TTCATCACTCTGTTGAACAT+TGG | + | chr4_1:66280892-66280911 | None:intergenic | 35.0% | |
| ATGTTCAACAGAGTGATGAA+TGG | - | chr4_1:66280892-66280911 | Msa0565400:intron | 35.0% | |
| ! | ATCCATTTGTTGAGTCAATC+TGG | - | chr4_1:66281483-66281502 | Msa0565400:intron | 35.0% |
| ! | CCTTTTAAACCATTCACACA+CGG | + | chr4_1:66281557-66281576 | None:intergenic | 35.0% |
| ! | AAACACCATTTTCAGCTGAA+AGG | + | chr4_1:66281684-66281703 | None:intergenic | 35.0% |
| TGAAAATGGTGTTTCATCAG+TGG | - | chr4_1:66281690-66281709 | Msa0565400:intron | 35.0% | |
| AATTTACACACAGATGAGCA+AGG | - | chr4_1:66281733-66281752 | Msa0565400:intron | 35.0% | |
| ATTTACACACAGATGAGCAA+GGG | - | chr4_1:66281734-66281753 | Msa0565400:intron | 35.0% | |
| ! | TCCTCCAAGTTACTTTGTAA+GGG | + | chr4_1:66281903-66281922 | None:intergenic | 35.0% |
| CTACTGATGTTTCAGCAATT+GGG | - | chr4_1:66281934-66281953 | Msa0565400:CDS | 35.0% | |
| ! | ATATGCAACTTCTGGTTGTT+GGG | + | chr4_1:66282250-66282269 | None:intergenic | 35.0% |
| ATTACCATTACACTGGAGAA+GGG | + | chr4_1:66282312-66282331 | None:intergenic | 35.0% | |
| !! | TGCATTGGTCTGTTAGATTT+TGG | - | chr4_1:66282331-66282350 | Msa0565400:five_prime_UTR | 35.0% |
| GAGAGATAGAAAACACGAAG+AGG | - | chr4_1:66278631-66278650 | Msa0565400:CDS | 40.0% | |
| ! | TAAGTATTGTGATCGGAGTG+CGG | - | chr4_1:66278723-66278742 | Msa0565400:intron | 40.0% |
| TAAGGATGAGCGGTAAAGTA+GGG | - | chr4_1:66278773-66278792 | Msa0565400:intron | 40.0% | |
| AGGTACATCATCATCGTTGT+CGG | - | chr4_1:66278804-66278823 | Msa0565400:CDS | 40.0% | |
| ! | CATGTTACAGTCTTTGAGAG+TGG | + | chr4_1:66278908-66278927 | None:intergenic | 40.0% |
| CACTCTCAAAGACTGTAACA+TGG | - | chr4_1:66278906-66278925 | Msa0565400:intron | 40.0% | |
| GTTAGTCGTCTTCTTTCTCA+AGG | - | chr4_1:66278943-66278962 | Msa0565400:CDS | 40.0% | |
| ! | GCGAATCCTTTGATAACAGT+GGG | - | chr4_1:66279174-66279193 | Msa0565400:intron | 40.0% |
| ! | CGAATCCTTTGATAACAGTG+GGG | - | chr4_1:66279175-66279194 | Msa0565400:intron | 40.0% |
| ! | CTAGCACAATTTTTACGAGG+GGG | + | chr4_1:66279551-66279570 | None:intergenic | 40.0% |
| ! | GCTAGCACAATTTTTACGAG+GGG | + | chr4_1:66279552-66279571 | None:intergenic | 40.0% |
| GTAAGGATACAACAGAACCA+AGG | - | chr4_1:66279628-66279647 | Msa0565400:CDS | 40.0% | |
| GTCTTATGCATCTAGTGTGA+TGG | - | chr4_1:66280098-66280117 | Msa0565400:CDS | 40.0% | |
| GATAAATACCTCCAAGATGG+TGG | + | chr4_1:66280144-66280163 | None:intergenic | 40.0% | |
| ATAACTGTACATGGTTGGAG+TGG | - | chr4_1:66280187-66280206 | Msa0565400:intron | 40.0% | |
| ! | GGAACCCTTTTCAATAGCAT+CGG | + | chr4_1:66280311-66280330 | None:intergenic | 40.0% |
| !! | TTGACAGCCAACTTGCTTTT+GGG | + | chr4_1:66280344-66280363 | None:intergenic | 40.0% |
| !! | TTTGACAGCCAACTTGCTTT+TGG | + | chr4_1:66280345-66280364 | None:intergenic | 40.0% |
| TATCTTCAGGGGACCAAAAT+GGG | + | chr4_1:66280493-66280512 | None:intergenic | 40.0% | |
| TTATCTTCAGGGGACCAAAA+TGG | + | chr4_1:66280494-66280513 | None:intergenic | 40.0% | |
| TTCTGTTGCAGTGATTCTGT+TGG | - | chr4_1:66280627-66280646 | Msa0565400:CDS | 40.0% | |
| CTGTCTTCATCATCACATCA+TGG | - | chr4_1:66280663-66280682 | Msa0565400:CDS | 40.0% | |
| TCTTCATCATCACATCATGG+TGG | - | chr4_1:66280666-66280685 | Msa0565400:CDS | 40.0% | |
| AATGGCTGACATTGTCAAGA+TGG | - | chr4_1:66280728-66280747 | Msa0565400:intron | 40.0% | |
| ATGGCTGACATTGTCAAGAT+GGG | - | chr4_1:66280729-66280748 | Msa0565400:intron | 40.0% | |
| CTAAATCTTCTGTCCACAGT+GGG | - | chr4_1:66280778-66280797 | Msa0565400:intron | 40.0% | |
| !! | AACATTCAAGTTGTGATGCG+AGG | + | chr4_1:66280835-66280854 | None:intergenic | 40.0% |
| TGAACATTGGGGTCAATAGA+AGG | + | chr4_1:66280918-66280937 | None:intergenic | 40.0% | |
| CATCACTCTGTTGAACATTG+GGG | + | chr4_1:66280890-66280909 | None:intergenic | 40.0% | |
| CATCAACAACAACTGTTGGT+GGG | + | chr4_1:66280971-66280990 | None:intergenic | 40.0% | |
| AATAGACAACTGCAGAACCA+CGG | - | chr4_1:66281041-66281060 | Msa0565400:CDS | 40.0% | |
| CAGCTACAAATTCATTTCCG+TGG | + | chr4_1:66281061-66281080 | None:intergenic | 40.0% | |
| GATGAGAATCCTGTTGATGT+TGG | - | chr4_1:66281098-66281117 | Msa0565400:CDS | 40.0% | |
| !! | CATCCTTTTGATGACAACGA+AGG | - | chr4_1:66281226-66281245 | Msa0565400:intron | 40.0% |
| TCACCTTCGTTGTCATCAAA+AGG | + | chr4_1:66281232-66281251 | None:intergenic | 40.0% | |
| ATGGTTGTTCCATGTGTAGT+TGG | - | chr4_1:66281390-66281409 | Msa0565400:intron | 40.0% | |
| ! | CACCAGATTGACTCAACAAA+TGG | + | chr4_1:66281488-66281507 | None:intergenic | 40.0% |
| TATCTAACTCCGTGTGTGAA+TGG | - | chr4_1:66281545-66281564 | Msa0565400:intron | 40.0% | |
| CCGTGTGTGAATGGTTTAAA+AGG | - | chr4_1:66281554-66281573 | Msa0565400:intron | 40.0% | |
| ACATGTGCCTTACATACATG+TGG | - | chr4_1:66281630-66281649 | Msa0565400:intron | 40.0% | |
| TCAGAGACCACATGTATGTA+AGG | + | chr4_1:66281640-66281659 | None:intergenic | 40.0% | |
| GGTCTCTGAGTCTTAATTTC+TGG | - | chr4_1:66281651-66281670 | Msa0565400:intron | 40.0% | |
| GTATGGAGTTGTAGGTGATT+TGG | + | chr4_1:66281796-66281815 | None:intergenic | 40.0% | |
| !! | GACTAAAACACTCTGGAGTA+TGG | + | chr4_1:66281813-66281832 | None:intergenic | 40.0% |
| AAGCTCAGACTAAAACACTC+TGG | + | chr4_1:66281820-66281839 | None:intergenic | 40.0% | |
| !!! | GAGTGTTTTAGTCTGAGCTT+TGG | - | chr4_1:66281820-66281839 | Msa0565400:CDS | 40.0% |
| !!! | AGTCTGAGCTTTGGAAGTTT+TGG | - | chr4_1:66281829-66281848 | Msa0565400:CDS | 40.0% |
| TAGGCCCTTACAAAGTAACT+TGG | - | chr4_1:66281896-66281915 | Msa0565400:CDS | 40.0% | |
| ! | CTCCTCCAAGTTACTTTGTA+AGG | + | chr4_1:66281904-66281923 | None:intergenic | 40.0% |
| GCTACTGATGTTTCAGCAAT+TGG | - | chr4_1:66281933-66281952 | Msa0565400:CDS | 40.0% | |
| TGCAGAAATCCCGACTATTA+TGG | - | chr4_1:66282042-66282061 | Msa0565400:five_prime_UTR | 40.0% | |
| GCAGAAATCCCGACTATTAT+GGG | - | chr4_1:66282043-66282062 | Msa0565400:five_prime_UTR | 40.0% | |
| CAGAAATCCCGACTATTATG+GGG | - | chr4_1:66282044-66282063 | Msa0565400:five_prime_UTR | 40.0% | |
| ATGCTCATCCCCATAATAGT+CGG | + | chr4_1:66282055-66282074 | None:intergenic | 40.0% | |
| CATATTGCTACTACCTCAGA+TGG | - | chr4_1:66282072-66282091 | Msa0565400:five_prime_UTR | 40.0% | |
| GGCAATATATCCCACATAAC+TGG | - | chr4_1:66282093-66282112 | Msa0565400:five_prime_UTR | 40.0% | |
| TATATCCCACATAACTGGTG+TGG | - | chr4_1:66282098-66282117 | Msa0565400:five_prime_UTR | 40.0% | |
| TTCTTCCATTTCACAACCAG+AGG | - | chr4_1:66282140-66282159 | Msa0565400:five_prime_UTR | 40.0% | |
| TAAAGCCTCTGGTTGTGAAA+TGG | + | chr4_1:66282148-66282167 | None:intergenic | 40.0% | |
| ! | TTTTCCTGAGCAGTTTCAGA+GGG | + | chr4_1:66282180-66282199 | None:intergenic | 40.0% |
| ! | ATTTTCCTGAGCAGTTTCAG+AGG | + | chr4_1:66282181-66282200 | None:intergenic | 40.0% |
| GTAAACTCATGCGAAGATGA+AGG | + | chr4_1:66282216-66282235 | None:intergenic | 40.0% | |
| ! | GATATGCAACTTCTGGTTGT+TGG | + | chr4_1:66282251-66282270 | None:intergenic | 40.0% |
| GAATGAGGATATGCAACTTC+TGG | + | chr4_1:66282258-66282277 | None:intergenic | 40.0% | |
| CATTACCATTACACTGGAGA+AGG | + | chr4_1:66282313-66282332 | None:intergenic | 40.0% | |
| CCAATGCATTACCATTACAC+TGG | + | chr4_1:66282319-66282338 | None:intergenic | 40.0% | |
| ! | CCAGTGTAATGGTAATGCAT+TGG | - | chr4_1:66282316-66282335 | Msa0565400:five_prime_UTR | 40.0% |
| CTATCTCTCTCTCTCTCTCT+CGG | + | chr4_1:66278620-66278639 | None:intergenic | 45.0% | |
| GTAAGGATGAGCGGTAAAGT+AGG | - | chr4_1:66278772-66278791 | Msa0565400:intron | 45.0% | |
| AAGGATGAGCGGTAAAGTAG+GGG | - | chr4_1:66278774-66278793 | Msa0565400:intron | 45.0% | |
| GGTACATCATCATCGTTGTC+GGG | - | chr4_1:66278805-66278824 | Msa0565400:CDS | 45.0% | |
| ATCATCGTTGTCGGGTATAC+CGG | - | chr4_1:66278813-66278832 | Msa0565400:CDS | 45.0% | |
| GTGGCATAGATCTCGTTATC+AGG | + | chr4_1:66278889-66278908 | None:intergenic | 45.0% | |
| GACGACTAACAGCTTCGTTA+GGG | + | chr4_1:66278933-66278952 | None:intergenic | 45.0% | |
| AGACGACTAACAGCTTCGTT+AGG | + | chr4_1:66278934-66278953 | None:intergenic | 45.0% | |
| ! | GGCGAATCCTTTGATAACAG+TGG | - | chr4_1:66279173-66279192 | Msa0565400:intron | 45.0% |
| TGCTACCCCACTGTTATCAA+AGG | + | chr4_1:66279183-66279202 | None:intergenic | 45.0% | |
| TGATAACAGTGGGGTAGCAT+TGG | - | chr4_1:66279184-66279203 | Msa0565400:intron | 45.0% | |
| TAATTACTCCCACGTGACCT+TGG | + | chr4_1:66279648-66279667 | None:intergenic | 45.0% | |
| TATAATATACCGAGTCGCGG+CGG | - | chr4_1:66279666-66279685 | Msa0565400:CDS | 45.0% | |
| TAAACACGGGTTTACTCTGC+TGG | + | chr4_1:66280038-66280057 | None:intergenic | 45.0% | |
| GAAAATGGAACGCCTGCTTA+TGG | - | chr4_1:66280063-66280082 | Msa0565400:CDS | 45.0% | |
| ACTAGATGCATAAGACGTGG+AGG | + | chr4_1:66280094-66280113 | None:intergenic | 45.0% | |
| CACACTAGATGCATAAGACG+TGG | + | chr4_1:66280097-66280116 | None:intergenic | 45.0% | |
| ! | GATTCTGTTGGTGTCCATGA+CGG | - | chr4_1:66280639-66280658 | Msa0565400:CDS | 45.0% |
| ATGATGAAGACAGTCCGTCA+TGG | + | chr4_1:66280656-66280675 | None:intergenic | 45.0% | |
| !! | ATGGTGGATTGCAATCTGCA+TGG | - | chr4_1:66280682-66280701 | Msa0565400:CDS | 45.0% |
| TGGATTGCAATCTGCATGGT+CGG | - | chr4_1:66280686-66280705 | Msa0565400:CDS | 45.0% | |
| CTGACATTGTCAAGATGGGT+AGG | - | chr4_1:66280733-66280752 | Msa0565400:intron | 45.0% | |
| GTGGACAGAAGATTTAGGCA+CGG | + | chr4_1:66280775-66280794 | None:intergenic | 45.0% | |
| CCACTGTGGACAGAAGATTT+AGG | + | chr4_1:66280780-66280799 | None:intergenic | 45.0% | |
| CCTAAATCTTCTGTCCACAG+TGG | - | chr4_1:66280777-66280796 | Msa0565400:intron | 45.0% | |
| CATTCTGATGATTCCCACTG+TGG | + | chr4_1:66280794-66280813 | None:intergenic | 45.0% | |
| GCATCAACAACAACTGTTGG+TGG | + | chr4_1:66280972-66280991 | None:intergenic | 45.0% | |
| TGGGCATCAACAACAACTGT+TGG | + | chr4_1:66280975-66280994 | None:intergenic | 45.0% | |
| AGCTGAAGACAGTTCTGTTG+AGG | - | chr4_1:66281076-66281095 | Msa0565400:CDS | 45.0% | |
| GAAGCAGATCCAACATCAAC+AGG | + | chr4_1:66281110-66281129 | None:intergenic | 45.0% | |
| GATAATCCAGGAACTGCTTC+TGG | - | chr4_1:66281155-66281174 | Msa0565400:intron | 45.0% | |
| TCATATCCAGAAGCAGTTCC+TGG | + | chr4_1:66281164-66281183 | None:intergenic | 45.0% | |
| CAAAAGGATGTCGATGAGAC+TGG | + | chr4_1:66281216-66281235 | None:intergenic | 45.0% | |
| ACATCAGAATTGTCCTCCTC+TGG | + | chr4_1:66281766-66281785 | None:intergenic | 45.0% | |
| !! | ACTCTGGAGTATGGAGTTGT+AGG | + | chr4_1:66281804-66281823 | None:intergenic | 45.0% |
| !! | AAATGCACTGTTTCTGGAGC+CGG | - | chr4_1:66281861-66281880 | Msa0565400:CDS | 45.0% |
| GCCCTTACAAAGTAACTTGG+AGG | - | chr4_1:66281899-66281918 | Msa0565400:CDS | 45.0% | |
| AGTAACTTGGAGGAGACTTC+TGG | - | chr4_1:66281909-66281928 | Msa0565400:CDS | 45.0% | |
| AACCACATACTTGGCATCTG+AGG | + | chr4_1:66281961-66281980 | None:intergenic | 45.0% | |
| TGCTCATCCCCATAATAGTC+GGG | + | chr4_1:66282054-66282073 | None:intergenic | 45.0% | |
| GTGGGATATATTGCCATCTG+AGG | + | chr4_1:66282088-66282107 | None:intergenic | 45.0% | |
| AGCATCCACACCAGTTATGT+GGG | + | chr4_1:66282106-66282125 | None:intergenic | 45.0% | |
| TAGCATCCACACCAGTTATG+TGG | + | chr4_1:66282107-66282126 | None:intergenic | 45.0% | |
| ACATAACTGGTGTGGATGCT+AGG | - | chr4_1:66282106-66282125 | Msa0565400:five_prime_UTR | 45.0% | |
| !! | GGTTCAGACTTTAAAGCCTC+TGG | + | chr4_1:66282159-66282178 | None:intergenic | 45.0% |
| ! | TGTGAGCTTGCTTGTGAATG+AGG | + | chr4_1:66282273-66282292 | None:intergenic | 45.0% |
| TTACACTGGAGAAGGGAGAT+AGG | + | chr4_1:66282305-66282324 | None:intergenic | 45.0% | |
| ATCTCCCTTCTCCAGTGTAA+TGG | - | chr4_1:66282305-66282324 | Msa0565400:five_prime_UTR | 45.0% | |
| AGGATGAGCGGTAAAGTAGG+GGG | - | chr4_1:66278775-66278794 | Msa0565400:intron | 50.0% | |
| GGTAAAGTAGGGGGACAGAA+AGG | - | chr4_1:66278784-66278803 | Msa0565400:intron | 50.0% | |
| ACAACAGAACCAAGGTCACG+TGG | - | chr4_1:66279636-66279655 | Msa0565400:CDS | 50.0% | |
| CAACAGAACCAAGGTCACGT+GGG | - | chr4_1:66279637-66279656 | Msa0565400:CDS | 50.0% | |
| ! | ACTGGTAGTGACCGATATGC+TGG | - | chr4_1:66279702-66279721 | Msa0565400:CDS | 50.0% |
| AATGGAACGCCTGCTTATGG+AGG | - | chr4_1:66280066-66280085 | Msa0565400:CDS | 50.0% | |
| TAAACAGGCAGCCACCATCT+TGG | - | chr4_1:66280130-66280149 | Msa0565400:intron | 50.0% | |
| CAGCCATTGACACTTGACCT+GGG | + | chr4_1:66280716-66280735 | None:intergenic | 50.0% | |
| TCAGCCATTGACACTTGACC+TGG | + | chr4_1:66280717-66280736 | None:intergenic | 50.0% | |
| AGATTTAGGCACGGATGCCT+TGG | + | chr4_1:66280766-66280785 | None:intergenic | 50.0% | |
| !! | AATGCACTGTTTCTGGAGCC+GGG | - | chr4_1:66281862-66281881 | Msa0565400:CDS | 50.0% |
| GTCCTCAGATGCCAAGTATG+TGG | - | chr4_1:66281956-66281975 | Msa0565400:CDS | 50.0% | |
| !! | TGAACCCTCTGAAACTGCTC+AGG | - | chr4_1:66282173-66282192 | Msa0565400:five_prime_UTR | 50.0% |
| TGGAGAAGGGAGATAGGTTC+TGG | + | chr4_1:66282299-66282318 | None:intergenic | 50.0% | |
| GTATTGTGATCGGAGTGCGG+CGG | - | chr4_1:66278726-66278745 | Msa0565400:intron | 55.0% | |
| GAACCCTAACTCGAGGGGAT+CGG | - | chr4_1:66278748-66278767 | Msa0565400:intron | 55.0% | |
| ACTCCGATCCCCTCGAGTTA+GGG | + | chr4_1:66278754-66278773 | None:intergenic | 55.0% | |
| TACTCCGATCCCCTCGAGTT+AGG | + | chr4_1:66278755-66278774 | None:intergenic | 55.0% | |
| AACTCGAGGGGATCGGAGTA+AGG | - | chr4_1:66278755-66278774 | Msa0565400:intron | 55.0% | |
| GGGATCGGAGTAAGGATGAG+CGG | - | chr4_1:66278763-66278782 | Msa0565400:intron | 55.0% | |
| ATCGTTGTCGGGTATACCGG+CGG | - | chr4_1:66278816-66278835 | Msa0565400:CDS | 55.0% | |
| GAGCCCAGGTCAAGTGTCAA+TGG | - | chr4_1:66280710-66280729 | Msa0565400:CDS | 55.0% | |
| TGTCAAGATGGGTAGGCCAC+AGG | - | chr4_1:66280740-66280759 | Msa0565400:intron | 55.0% | |
| AAGTTGTGATGCGAGGCTGC+TGG | + | chr4_1:66280828-66280847 | None:intergenic | 55.0% | |
| ! | GTTGGTGGGTGCTCAACAGA+AGG | + | chr4_1:66280957-66280976 | None:intergenic | 55.0% |
| TGAGCAAGGGACAGAACCAG+AGG | - | chr4_1:66281747-66281766 | Msa0565400:intron | 55.0% | |
| GAGCCGGGACACATTCATCT+AGG | - | chr4_1:66281877-66281896 | Msa0565400:CDS | 55.0% | |
| GGGCCTAGATGAATGTGTCC+CGG | + | chr4_1:66281883-66281902 | None:intergenic | 55.0% | |
| !! | ACCATTTTCCGACTCGCCGC+CGG | + | chr4_1:66278835-66278854 | None:intergenic | 60.0% |
| AATATACCGAGTCGCGGCGG+CGG | - | chr4_1:66279669-66279688 | Msa0565400:CDS | 60.0% | |
| AGTGACCGATATGCTGGCCG+TGG | - | chr4_1:66279708-66279727 | Msa0565400:CDS | 60.0% | |
| AACTTGCACCACCGCCACCA+CGG | + | chr4_1:66279728-66279747 | None:intergenic | 60.0% | |
| GTGGAGGAGCCTCCATAAGC+AGG | + | chr4_1:66280078-66280097 | None:intergenic | 60.0% | |
| ACAGGCAGCCACCATCTTGG+AGG | - | chr4_1:66280133-66280152 | Msa0565400:intron | 60.0% | |
| GCAAGGGACAGAACCAGAGG+AGG | - | chr4_1:66281750-66281769 | Msa0565400:intron | 60.0% | |
| TGCGGCGGAACCCTAACTCG+AGG | - | chr4_1:66278741-66278760 | Msa0565400:intron | 65.0% | |
| GCGGCGGAACCCTAACTCGA+GGG | - | chr4_1:66278742-66278761 | Msa0565400:intron | 65.0% | |
| CGGCGGAACCCTAACTCGAG+GGG | - | chr4_1:66278743-66278762 | Msa0565400:intron | 65.0% | |
| ACCGGCGGCGAGTCGGAAAA+TGG | - | chr4_1:66278831-66278850 | Msa0565400:CDS | 65.0% | |
| GACCGATATGCTGGCCGTGG+TGG | - | chr4_1:66279711-66279730 | Msa0565400:CDS | 65.0% | |
| CGCCACCACGGCCAGCATAT+CGG | + | chr4_1:66279716-66279735 | None:intergenic | 65.0% | |
| CGATATGCTGGCCGTGGTGG+CGG | - | chr4_1:66279714-66279733 | Msa0565400:CDS | 65.0% | |
| GATGGGTAGGCCACAGGCCA+AGG | - | chr4_1:66280746-66280765 | Msa0565400:intron | 65.0% | |
| CGGGTATACCGGCGGCGAGT+CGG | - | chr4_1:66278824-66278843 | Msa0565400:CDS | 70.0% | |
| !! | TATGCTGGCCGTGGTGGCGG+TGG | - | chr4_1:66279717-66279736 | Msa0565400:CDS | 70.0% |
| TCTGCATGGTCGGCGAGCCC+AGG | - | chr4_1:66280696-66280715 | Msa0565400:CDS | 70.0% | |
| GGCACGGATGCCTTGGCCTG+TGG | + | chr4_1:66280759-66280778 | None:intergenic | 70.0% | |
| ATACCGAGTCGCGGCGGCGG+TGG | - | chr4_1:66279672-66279691 | Msa0565400:CDS | 75.0% | |
| ! | GGCGGCGGTGGTGGTAGGAC+TGG | - | chr4_1:66279684-66279703 | Msa0565400:CDS | 75.0% |
| ! | CCACCACCGCCGCCGCGACT+CGG | + | chr4_1:66279678-66279697 | None:intergenic | 80.0% |
| !! | GTCGCGGCGGCGGTGGTGGT+AGG | - | chr4_1:66279679-66279698 | Msa0565400:CDS | 80.0% |
| ! | CCGAGTCGCGGCGGCGGTGG+TGG | - | chr4_1:66279675-66279694 | Msa0565400:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 66278386 | 66282374 | 66278386 | ID=Msa0565400;Name=Msa0565400 |
| chr4_1 | mRNA | 66278386 | 66282374 | 66278386 | ID=Msa0565400-mRNA-1;Parent=Msa0565400;Name=Msa0565400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=392|0.57|0.5|1|1|1|8|0|529 |
| chr4_1 | exon | 66278386 | 66278713 | 66278386 | ID=Msa0565400-mRNA-1:exon:21431;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66278790 | 66278861 | 66278790 | ID=Msa0565400-mRNA-1:exon:21430;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66278939 | 66279071 | 66278939 | ID=Msa0565400-mRNA-1:exon:21429;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66279569 | 66280122 | 66279569 | ID=Msa0565400-mRNA-1:exon:21428;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66280606 | 66280735 | 66280606 | ID=Msa0565400-mRNA-1:exon:21427;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66280992 | 66281133 | 66280992 | ID=Msa0565400-mRNA-1:exon:21426;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66281658 | 66281701 | 66281658 | ID=Msa0565400-mRNA-1:exon:21425;Parent=Msa0565400-mRNA-1 |
| chr4_1 | exon | 66281796 | 66282374 | 66281796 | ID=Msa0565400-mRNA-1:exon:21424;Parent=Msa0565400-mRNA-1 |
| chr4_1 | five_prime_UTR | 66281983 | 66282374 | 66281983 | ID=Msa0565400-mRNA-1:five_prime_utr;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66281796 | 66281982 | 66281796 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66281658 | 66281701 | 66281658 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66280992 | 66281133 | 66280992 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66280606 | 66280735 | 66280606 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66279569 | 66280122 | 66279569 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66278939 | 66279071 | 66278939 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66278790 | 66278861 | 66278790 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| chr4_1 | CDS | 66278386 | 66278713 | 66278386 | ID=Msa0565400-mRNA-1:cds;Parent=Msa0565400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
