AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0566060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566060 MtrunA17_Chr8g0380121 100.000 134 0 0 1 134 1 134 6.90e-95 277
Msa0566060 MtrunA17_Chr3g0145091 52.206 136 63 1 1 134 1 136 7.84e-41 139
Msa0566060 MtrunA17_Chr4g0035851 52.206 136 63 1 1 134 1 136 2.89e-36 127
Msa0566060 MtrunA17_Chr5g0408971 39.416 137 77 2 1 134 1 134 4.74e-27 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566060 AT4G18060.1 70.803 137 37 1 1 134 1 137 2.13e-68 210
Msa0566060 AT4G34660.3 46.324 136 68 2 1 134 1 133 3.75e-33 118
Msa0566060 AT4G34660.1 46.324 136 68 2 1 134 1 133 5.91e-33 119
Msa0566060 AT1G31440.1 44.444 135 71 2 1 134 1 132 9.55e-28 106
Msa0566060 AT4G34660.2 40.441 136 53 2 1 134 1 110 1.41e-24 96.7

Find 104 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTAATTAATCAATTA+TGG 0.163276 4_1:-67044350 Msa0566060:three_prime_UTR
CTCCTTCTGACCACCCTGTT+TGG 0.277296 4_1:+67045100 None:intergenic
CTAGAGTAGAAATGTATAAT+TGG 0.299207 4_1:+67044504 None:intergenic
AAAGGAGGGTGGTTTCCTTC+TGG 0.310065 4_1:-67045066 Msa0566060:three_prime_UTR
TTTACCTAGAACTGCCATAT+TGG 0.330252 4_1:+67046624 None:intergenic
GTGCTTATGGTAATGTCTAT+TGG 0.330383 4_1:-67044672 Msa0566060:three_prime_UTR
AGAGAAAACAATGTACTTCT+TGG 0.347005 4_1:-67046133 Msa0566060:three_prime_UTR
GTTACACAGGTGAGCCAAAC+AGG 0.349387 4_1:-67045114 Msa0566060:intron
TCTCCAGCCATGTTGCTAGA+TGG 0.356206 4_1:+67045018 None:intergenic
CTAGAAGACAAGCACGGGTT+AGG 0.357945 4_1:-67046714 Msa0566060:three_prime_UTR
GTAGAGGATGGTGGAATTGA+TGG 0.368031 4_1:-67044897 Msa0566060:three_prime_UTR
TCTGAGGAGTGCTGTAGATA+TGG 0.376609 4_1:-67048955 Msa0566060:CDS
GCTAAGGCCGCATCAGTATA+TGG 0.376664 4_1:-67048904 Msa0566060:CDS
AAAGCCAATATGGCAGTTCT+AGG 0.377743 4_1:-67046628 Msa0566060:three_prime_UTR
ATAACAACATAACATTTGAT+TGG 0.387803 4_1:-67050809 Msa0566060:five_prime_UTR
TGCCTCTGCAGCATGCAGTT+TGG 0.390750 4_1:+67046666 None:intergenic
GCAGGAGCTGAAAGCCAATA+TGG 0.397351 4_1:-67046638 Msa0566060:three_prime_UTR
CGATTCTTTCTTCTGTCTGT+CGG 0.410684 4_1:+67046188 None:intergenic
CATGGCTGGAGAAGTTTACT+AGG 0.414641 4_1:-67045007 Msa0566060:three_prime_UTR
AATTAAATAATTAATCCAAC+AGG 0.417324 4_1:+67044362 None:intergenic
GCAAGTTGTCAAACAACAAC+AGG 0.420146 4_1:-67050712 Msa0566060:intron
TGCTGCAGAGGCAAAGATGC+AGG 0.422100 4_1:-67046656 Msa0566060:three_prime_UTR
CTCCAGCCATGTTGCTAGAT+GGG 0.428147 4_1:+67045019 None:intergenic
TCTTATAAGCATATTGAAAC+AGG 0.429719 4_1:-67049104 Msa0566060:intron
AATGATCAATGGCCCACCTT+TGG 0.437837 4_1:-67047648 Msa0566060:three_prime_UTR
TTGGTTGAATGAAGAATGAT+AGG 0.443623 4_1:-67044653 Msa0566060:three_prime_UTR
AACATATGGAGAAGCTGTAC+AGG 0.447502 4_1:-67050267 Msa0566060:CDS
CTGTACAGGGCCACTCGTGC+CGG 0.450031 4_1:-67050253 Msa0566060:CDS
GATCAATGGCCCACCTTTGG+AGG 0.457825 4_1:-67047645 Msa0566060:three_prime_UTR
AATATAAGACCATGTACAAT+GGG 0.465043 4_1:-67044401 Msa0566060:three_prime_UTR
TAGAAGACAAGCACGGGTTA+GGG 0.473006 4_1:-67046713 Msa0566060:three_prime_UTR
GTAATCTGCAAGAGTGGAGT+AGG 0.484711 4_1:-67044609 Msa0566060:three_prime_UTR
TGCTCGCAAACATGTAGAAA+AGG 0.487145 4_1:-67048878 Msa0566060:CDS
TAAAGAAGCTTCGGCTGCAT+TGG 0.487250 4_1:-67046605 Msa0566060:three_prime_UTR
AGTTCTAGGTAAAGAAGCTT+CGG 0.491125 4_1:-67046614 Msa0566060:three_prime_UTR
TGTACAGGGCCACTCGTGCC+GGG 0.491956 4_1:-67050252 Msa0566060:CDS
ACAAATCATGTACATTTGAC+AGG 0.500089 4_1:+67044425 None:intergenic
GGAATCTCAAACTGCTGAGC+AGG 0.503789 4_1:-67046692 Msa0566060:three_prime_UTR
TTACGATGCTGAAACGGAAA+AGG 0.507521 4_1:-67045300 Msa0566060:three_prime_UTR
GCATCCTTACGATGCTGAAA+CGG 0.514169 4_1:-67045306 Msa0566060:three_prime_UTR
CCATTGATCATTTGTCTCAA+AGG 0.516154 4_1:+67047659 None:intergenic
GGAGAATGCAATGGTAAAGG+AGG 0.517024 4_1:-67045081 Msa0566060:three_prime_UTR
ATCCCATCTAGCAACATGGC+TGG 0.518734 4_1:-67045021 Msa0566060:three_prime_UTR
AGGAGCACGAAGAATTGAAT+CGG 0.522277 4_1:-67048858 Msa0566060:CDS
AATGCAGAGACATCAACATA+TGG 0.529225 4_1:-67050281 Msa0566060:CDS
CCTTTGAGACAAATGATCAA+TGG 0.536520 4_1:-67047659 Msa0566060:exon
ATTGGAATTTGAGCTAGTGC+AGG 0.543842 4_1:+67044522 None:intergenic
AGCCAAACAGGGTGGTCAGA+AGG 0.549155 4_1:-67045102 Msa0566060:three_prime_UTR
CGACAGACAGAAGAAAGAAT+CGG 0.549964 4_1:-67046187 Msa0566060:three_prime_UTR
CAGGGCCACTCGTGCCGGGA+GGG 0.550379 4_1:-67050248 Msa0566060:intron
CAATATAAGACCATGTACAA+TGG 0.553930 4_1:-67044402 Msa0566060:three_prime_UTR
TGACTTTATTGTCGTGCGGA+AGG 0.554090 4_1:-67045258 Msa0566060:intron
GATGAACAAATTGAATGTAG+AGG 0.554717 4_1:-67044913 Msa0566060:three_prime_UTR
TTGTTTCCTAAAAGCGTCCA+TGG 0.555831 4_1:+67050752 None:intergenic
GAAGGAGAATGCAATGGTAA+AGG 0.558279 4_1:-67045084 Msa0566060:three_prime_UTR
GACTATACCGTTGAGCAAGA+TGG 0.558931 4_1:+67047615 None:intergenic
ATAAAACAATTCAGCGGCAG+CGG 0.560251 4_1:-67050343 Msa0566060:CDS
AACAATGTACTTCTTGGCTG+AGG 0.565631 4_1:-67046127 Msa0566060:intron
TTATGAGAGCTCAGATGTTG+TGG 0.566218 4_1:-67050320 Msa0566060:CDS
TATGTAAGTTACCCCACAGC+TGG 0.566545 4_1:+67044824 None:intergenic
TGGCGAGCATCCTCCAAAGG+TGG 0.568058 4_1:+67047635 None:intergenic
GACAGGTATCACATTGCAGA+GGG 0.568325 4_1:+67044442 None:intergenic
TGCCAAACTGCATGCTGCAG+AGG 0.569320 4_1:-67046668 Msa0566060:three_prime_UTR
ATCTTGCTCAACGGTATAGT+CGG 0.569750 4_1:-67047613 Msa0566060:three_prime_UTR
ATCTACCCTCCCGGCACGAG+TGG 0.572718 4_1:+67050243 None:intergenic
TTCAAATCAATCAATTACAA+AGG 0.575367 4_1:+67044713 None:intergenic
GATTTCTAGAAGACAAGCAC+GGG 0.579843 4_1:-67046719 Msa0566060:three_prime_UTR
CCATTCTGGGACATAACGAC+TGG 0.580436 4_1:+67046159 None:intergenic
GACAGGAACAAAACTTTCTG+AGG 0.585432 4_1:-67048971 Msa0566060:intron
GGCGAGCATCCTCCAAAGGT+GGG 0.586656 4_1:+67047636 None:intergenic
AGAGTGGAGTAGGGTGAGTG+AGG 0.594788 4_1:-67044599 Msa0566060:three_prime_UTR
AACAAATTGAATGTAGAGGA+TGG 0.596062 4_1:-67044909 Msa0566060:three_prime_UTR
AGGGCTGTAATCTGCAAGAG+TGG 0.605707 4_1:-67044615 Msa0566060:three_prime_UTR
CCAGTCGTTATGTCCCAGAA+TGG 0.605721 4_1:-67046159 Msa0566060:three_prime_UTR
TTCTGGGACATAACGACTGG+AGG 0.607465 4_1:+67046162 None:intergenic
AATGCAATGGTAAAGGAGGG+TGG 0.612541 4_1:-67045077 Msa0566060:three_prime_UTR
CAGTGACAACATATTAGCTA+AGG 0.621538 4_1:-67048920 Msa0566060:CDS
GAGAATGCAATGGTAAAGGA+GGG 0.624503 4_1:-67045080 Msa0566060:three_prime_UTR
TCACTGTCACTGTACCGCCA+TGG 0.626505 4_1:-67050769 Msa0566060:exon
AGATTTCTAGAAGACAAGCA+CGG 0.627170 4_1:-67046720 Msa0566060:three_prime_UTR
AGATGGCGAGCATCCTCCAA+AGG 0.629190 4_1:+67047632 None:intergenic
GTGGTTTCCTTCTGGCTACG+TGG 0.635363 4_1:-67045058 Msa0566060:three_prime_UTR
ATGCTCGCCATCTTGCTCAA+CGG 0.635883 4_1:-67047622 Msa0566060:three_prime_UTR
AAATTGAATGTAGAGGATGG+TGG 0.637661 4_1:-67044906 Msa0566060:three_prime_UTR
TGACAGGTATCACATTGCAG+AGG 0.638863 4_1:+67044441 None:intergenic
TAATCTGCAAGAGTGGAGTA+GGG 0.639250 4_1:-67044608 Msa0566060:three_prime_UTR
TCTGGGACATAACGACTGGA+GGG 0.639602 4_1:+67046163 None:intergenic
GCTGTGGGGTAACTTACATA+CGG 0.640281 4_1:-67044821 Msa0566060:three_prime_UTR
ACATATGGAGAAGCTGTACA+GGG 0.640293 4_1:-67050266 Msa0566060:CDS
ACAGGGCCACTCGTGCCGGG+AGG 0.642315 4_1:-67050249 Msa0566060:CDS
GAGAATCCCATCTAGCAACA+TGG 0.651891 4_1:-67045025 Msa0566060:three_prime_UTR
AAAGAATGAACAGCACAAAG+TGG 0.659222 4_1:+67044980 None:intergenic
TGGTCAGAAGGAGAATGCAA+TGG 0.665150 4_1:-67045090 Msa0566060:three_prime_UTR
ATTCTGTGATAACAGACGAG+AGG 0.665845 4_1:+67044866 None:intergenic
AGGGTGACTTTATTGTCGTG+CGG 0.669680 4_1:-67045262 Msa0566060:three_prime_UTR
AGCATCGCCATATACTGATG+CGG 0.677187 4_1:+67048897 None:intergenic
TTACACAGGTGAGCCAAACA+GGG 0.693041 4_1:-67045113 Msa0566060:intron
CTGGGACATAACGACTGGAG+GGG 0.697996 4_1:+67046164 None:intergenic
GCTGTAATAAAACAATTCAG+CGG 0.702826 4_1:-67050349 Msa0566060:CDS
AGGGTGAGTGAGGACCATGT+CGG 0.709227 4_1:-67044589 Msa0566060:three_prime_UTR
CACAGGTGAGCCAAACAGGG+TGG 0.732609 4_1:-67045110 Msa0566060:intron
TTTGATAAAGATCACAGACA+CGG 0.744802 4_1:+67044465 None:intergenic
TTTCCTAAAAGCGTCCATGG+CGG 0.761041 4_1:+67050755 None:intergenic
GTGGGGTAACTTACATACGG+TGG 0.770226 4_1:-67044818 Msa0566060:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTTAATTATTT+CGG + chr4_1:67048434-67048453 None:intergenic 0.0%
!! AAAAAATTCAAAATTGTTAA+TGG - chr4_1:67044680-67044699 Msa0566060:three_prime_UTR 10.0%
!! AAAAATTCAAAATTGTTAAT+GGG - chr4_1:67044681-67044700 Msa0566060:three_prime_UTR 10.0%
!!! TATAGTTTTTTTTTTTTTTG+TGG - chr4_1:67046771-67046790 Msa0566060:intron 10.0%
!!! TTATAATTTTAATTATTTCG+GGG + chr4_1:67048432-67048451 None:intergenic 10.0%
!!! ATATTTTTATAATGATAATG+AGG + chr4_1:67049329-67049348 None:intergenic 10.0%
!!! ATCTTAAAAAATTGTTTTTT+TGG - chr4_1:67049857-67049876 Msa0566060:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047150-67047169 Msa0566060:intron 100.0%
!!! GATTTCTAAAATTGATTTTT+AGG + chr4_1:67044372-67044391 None:intergenic 15.0%
!!! CTATAATTTGTAGTATTTTA+TGG + chr4_1:67046756-67046775 None:intergenic 15.0%
!!! AATATTTTACAAAGATGATA+AGG - chr4_1:67046937-67046956 Msa0566060:intron 15.0%
!!! ATTTTTAAAATACTCTGTTA+TGG - chr4_1:67047254-67047273 Msa0566060:intron 15.0%
!! AGTTATAACAAAATATGTTA+AGG - chr4_1:67047359-67047378 Msa0566060:intron 15.0%
!!! TATAATTTTAATTATTTCGG+GGG + chr4_1:67048431-67048450 None:intergenic 15.0%
!!! AGATTTTTGAAAAATCAATT+TGG + chr4_1:67049613-67049632 None:intergenic 15.0%
!!! TTTTTCAATGTTTTACTTTT+GGG - chr4_1:67050523-67050542 Msa0566060:intron 15.0%
!! AATTAAATAATTAATCCAAC+AGG + chr4_1:67050934-67050953 None:intergenic 15.0%
!! ATAACAACATAACATTTGAT+TGG - chr4_1:67044484-67044503 Msa0566060:three_prime_UTR 20.0%
!! GAAAATCTGTTAAAATAGAA+TGG - chr4_1:67045536-67045555 Msa0566060:intron 20.0%
!! AGATGTATTTGAAAGAAATA+AGG + chr4_1:67045894-67045913 None:intergenic 20.0%
!!! TTCTTCTTTAACTTATTGAA+AGG + chr4_1:67046997-67047016 None:intergenic 20.0%
!!! TTTGATACTTGAAATTTTTC+AGG - chr4_1:67047533-67047552 Msa0566060:intron 20.0%
!!! TTGATACTTGAAATTTTTCA+GGG - chr4_1:67047534-67047553 Msa0566060:intron 20.0%
!! AAGCATTTAATGAGAAAAAA+AGG - chr4_1:67048015-67048034 Msa0566060:intron 20.0%
!! ATTCTATAAGCATCTATAAA+AGG - chr4_1:67048142-67048161 Msa0566060:intron 20.0%
!! TTCTATAAGCATCTATAAAA+GGG - chr4_1:67048143-67048162 Msa0566060:intron 20.0%
!!! CTAATACTTTATTTAGATCA+TGG - chr4_1:67048456-67048475 Msa0566060:intron 20.0%
!!! GAAGTCAAAACAATAATTTT+CGG + chr4_1:67049565-67049584 None:intergenic 20.0%
!!! TTTGATTTCGCTAATATTTT+GGG - chr4_1:67049585-67049604 Msa0566060:intron 20.0%
!!! GATTTTTCAAAAATCTTTCA+AGG - chr4_1:67049617-67049636 Msa0566060:intron 20.0%
!!! GTTTTTCAATGTTTTACTTT+TGG - chr4_1:67050522-67050541 Msa0566060:intron 20.0%
!! TTCAAATCAATCAATTACAA+AGG + chr4_1:67050583-67050602 None:intergenic 20.0%
!! AAAAAATTTCAATAACCTGT+TGG - chr4_1:67050916-67050935 Msa0566060:five_prime_UTR 20.0%
! AAAAGGTAAACTTGTGAAAT+GGG + chr4_1:67044623-67044642 None:intergenic 25.0%
! AAAAAGGTAAACTTGTGAAA+TGG + chr4_1:67044624-67044643 None:intergenic 25.0%
! CAAAACACTAGTATACTATA+TGG + chr4_1:67044889-67044908 None:intergenic 25.0%
!! TATAGTATACTAGTGTTTTG+CGG - chr4_1:67044889-67044908 Msa0566060:three_prime_UTR 25.0%
! AAGTTTATATACTTGTTTGC+AGG - chr4_1:67044922-67044941 Msa0566060:three_prime_UTR 25.0%
! GAAAGTCTATTCAGTATTAA+TGG - chr4_1:67045171-67045190 Msa0566060:intron 25.0%
! GACTCAAACTTAATACAATA+TGG + chr4_1:67045293-67045312 None:intergenic 25.0%
! ATTAATATATCAGAAAAGCG+TGG - chr4_1:67045563-67045582 Msa0566060:intron 25.0%
! TCTACAGAAGAAAGAAAAAA+GGG + chr4_1:67045781-67045800 None:intergenic 25.0%
! CCAAAATAAGGAAATCTAAT+GGG + chr4_1:67045832-67045851 None:intergenic 25.0%
! ACCAAAATAAGGAAATCTAA+TGG + chr4_1:67045833-67045852 None:intergenic 25.0%
! AATCCAGGATATCAATATAT+GGG + chr4_1:67045868-67045887 None:intergenic 25.0%
! AAATCCAGGATATCAATATA+TGG + chr4_1:67045869-67045888 None:intergenic 25.0%
! ATATATTGATATCCTGGATT+TGG - chr4_1:67045868-67045887 Msa0566060:intron 25.0%
! AAGAGACCATATAAATTGAT+GGG - chr4_1:67045975-67045994 Msa0566060:intron 25.0%
! TAAACAGAATAGACACAAAA+AGG + chr4_1:67046090-67046109 None:intergenic 25.0%
!! CTGCTTTAACAATTTCTTTT+TGG + chr4_1:67046149-67046168 None:intergenic 25.0%
! TCTTATAAGCATATTGAAAC+AGG - chr4_1:67046189-67046208 Msa0566060:three_prime_UTR 25.0%
! AGTGAATAAACAAAATTGTG+TGG + chr4_1:67046268-67046287 None:intergenic 25.0%
! AACATATGAAAAGTTTACCT+GGG + chr4_1:67046471-67046490 None:intergenic 25.0%
!!! TCTAGTTGTATAAGTTTTAG+TGG - chr4_1:67046492-67046511 Msa0566060:intron 25.0%
! GAGTAAGATATCTGAAAAAA+TGG + chr4_1:67046635-67046654 None:intergenic 25.0%
! TAAAATATTACTTAGTCAGC+TGG + chr4_1:67046926-67046945 None:intergenic 25.0%
!! TTCGATAAGAGTGTAAAAAA+GGG + chr4_1:67047418-67047437 None:intergenic 25.0%
!!! TTTGACTTTTGATACTATAG+AGG - chr4_1:67047503-67047522 Msa0566060:intron 25.0%
! TGAGAGAAATATGAATCAAA+TGG - chr4_1:67047590-67047609 Msa0566060:three_prime_UTR 25.0%
! AAACTACATCAGATTATTAC+TGG + chr4_1:67047753-67047772 None:intergenic 25.0%
! TTAACTTCATATCTCATGTA+CGG - chr4_1:67047772-67047791 Msa0566060:intron 25.0%
! TGTAATAAACAGTGAAAGTT+TGG - chr4_1:67047797-67047816 Msa0566060:intron 25.0%
! CAAATATGCTTTGTAAATAG+AGG - chr4_1:67047870-67047889 Msa0566060:intron 25.0%
! ACTATTTGTTCTGATATTCT+TGG - chr4_1:67047967-67047986 Msa0566060:intron 25.0%
! CTTATAGAATAGTTAGATGA+GGG + chr4_1:67048132-67048151 None:intergenic 25.0%
!!! TAGATTTCATTCTAGCTTAT+TGG + chr4_1:67048215-67048234 None:intergenic 25.0%
! AAGCTAGAATGAAATCTAAA+TGG - chr4_1:67048217-67048236 Msa0566060:intron 25.0%
! AGCTAGAATGAAATCTAAAT+GGG - chr4_1:67048218-67048237 Msa0566060:intron 25.0%
! ATTACACTATTACTTGATCT+AGG + chr4_1:67048244-67048263 None:intergenic 25.0%
!! TCTTAACCTTATTTACTCAT+TGG - chr4_1:67048525-67048544 Msa0566060:intron 25.0%
!! GATCATGCTTATGATTTTAT+AGG - chr4_1:67048838-67048857 Msa0566060:intron 25.0%
! AGTTTCAATTTCACCAAAAA+TGG + chr4_1:67048900-67048919 None:intergenic 25.0%
! AATAACAATAAATCTCAGGA+TGG + chr4_1:67048937-67048956 None:intergenic 25.0%
! CAACAATAACAATAAATCTC+AGG + chr4_1:67048941-67048960 None:intergenic 25.0%
! TTTCTATGATTGTTAACACT+TGG - chr4_1:67049062-67049081 Msa0566060:intron 25.0%
! ATCTTAGGTTTAGATAAATG+CGG + chr4_1:67049196-67049215 None:intergenic 25.0%
! TTTATCTAAACCTAAGATGA+TGG - chr4_1:67049198-67049217 Msa0566060:intron 25.0%
!! TTGCTATTGTTATTGTTATG+TGG - chr4_1:67049221-67049240 Msa0566060:intron 25.0%
! CTAAGCAAGTAAAAATACAA+TGG + chr4_1:67049368-67049387 None:intergenic 25.0%
!!! TTTACTTGCTTAGTTTTGTT+AGG - chr4_1:67049375-67049394 Msa0566060:intron 25.0%
!! TTATGGTTAGGTTTTACTTA+GGG - chr4_1:67049458-67049477 Msa0566060:intron 25.0%
!!! CTTTGATTTCGCTAATATTT+TGG - chr4_1:67049584-67049603 Msa0566060:intron 25.0%
!! TTTTCCTTTCAAGATATCAT+GGG - chr4_1:67049642-67049661 Msa0566060:intron 25.0%
!! GAAGTGACTTTTCAAAATTT+GGG - chr4_1:67049809-67049828 Msa0566060:intron 25.0%
!!! ATTGTTTTTTTGGAATCACT+CGG - chr4_1:67049867-67049886 Msa0566060:intron 25.0%
! CATGAAGAAATAAATTACAC+AGG + chr4_1:67049928-67049947 None:intergenic 25.0%
!!! TCCTGTTATCTATTTTTTCT+AGG - chr4_1:67050076-67050095 Msa0566060:intron 25.0%
! TTCATTATAACAGGATGAAT+CGG + chr4_1:67050105-67050124 None:intergenic 25.0%
! TTCATCCTGTTATAATGAAT+TGG - chr4_1:67050106-67050125 Msa0566060:intron 25.0%
! CAAATCCAATTCATTATAAC+AGG + chr4_1:67050114-67050133 None:intergenic 25.0%
!!! CTGTGTAACATTTAGAATTT+TGG + chr4_1:67050168-67050187 None:intergenic 25.0%
! CAAAATTCTAAATGTTACAC+AGG - chr4_1:67050166-67050185 Msa0566060:intron 25.0%
! CTAGAGTAGAAATGTATAAT+TGG + chr4_1:67050792-67050811 None:intergenic 25.0%
! AATATAAGACCATGTACAAT+GGG - chr4_1:67050892-67050911 Msa0566060:five_prime_UTR 25.0%
!!! AATTTTTTTCCCATTGTACA+TGG + chr4_1:67050904-67050923 None:intergenic 25.0%
TGAAGTTAGAAGAGAGAAAA+AGG + chr4_1:67044640-67044659 None:intergenic 30.0%
!!! TTTTTTTGAGAACCCAGATT+CGG + chr4_1:67044666-67044685 None:intergenic 30.0%
! TCAAAATGCGTTTTCTTGAT+TGG - chr4_1:67044741-67044760 Msa0566060:three_prime_UTR 30.0%
GCTGTAATAAAACAATTCAG+CGG - chr4_1:67044944-67044963 Msa0566060:three_prime_UTR 30.0%
TTGTAGGTTGTATGTGTATT+AGG - chr4_1:67045149-67045168 Msa0566060:intron 30.0%
TGTATTAAGTTTGAGTCTAG+TGG - chr4_1:67045296-67045315 Msa0566060:three_prime_UTR 30.0%
TTACATTTAAGTCACTTCTG+AGG + chr4_1:67045330-67045349 None:intergenic 30.0%
ATTGATTGACAAATCAAAGC+TGG + chr4_1:67045418-67045437 None:intergenic 30.0%
!! AGCTTTGATTTGTCAATCAA+TGG - chr4_1:67045417-67045436 Msa0566060:intron 30.0%
TGTGAATATGAAGAAGATCA+GGG + chr4_1:67045641-67045660 None:intergenic 30.0%
ATGTGAATATGAAGAAGATC+AGG + chr4_1:67045642-67045661 None:intergenic 30.0%
AGAAAGAAAAAAGGGAATAG+AGG + chr4_1:67045773-67045792 None:intergenic 30.0%
GTCTACAGAAGAAAGAAAAA+AGG + chr4_1:67045782-67045801 None:intergenic 30.0%
TTTCTTCTGTAGACTTTGAT+TGG - chr4_1:67045788-67045807 Msa0566060:intron 30.0%
!! CCCATTAGATTTCCTTATTT+TGG - chr4_1:67045829-67045848 Msa0566060:intron 30.0%
ATCCAGGATATCAATATATG+GGG + chr4_1:67045867-67045886 None:intergenic 30.0%
AATGAGCTTAATCTTAAGTG+AGG - chr4_1:67045940-67045959 Msa0566060:intron 30.0%
GAAGAGACCATATAAATTGA+TGG - chr4_1:67045974-67045993 Msa0566060:intron 30.0%
AGAGACCATATAAATTGATG+GGG - chr4_1:67045976-67045995 Msa0566060:intron 30.0%
! CTACAAAAGTATGATTCAGA+AGG + chr4_1:67046016-67046035 None:intergenic 30.0%
! TTTCTTTTTCCTGTGATTTG+TGG - chr4_1:67046228-67046247 Msa0566060:intron 30.0%
ATCCTCATAAACAATAGTCA+TGG - chr4_1:67046297-67046316 Msa0566060:intron 30.0%
TACCATGACTATTGTTTATG+AGG + chr4_1:67046302-67046321 None:intergenic 30.0%
CAACATATGAAAAGTTTACC+TGG + chr4_1:67046472-67046491 None:intergenic 30.0%
TTCATTTATGTGAGTATGCA+TGG - chr4_1:67046558-67046577 Msa0566060:three_prime_UTR 30.0%
ACATGACAATCTTGAAAACA+AGG + chr4_1:67046720-67046739 None:intergenic 30.0%
ATGCTTAAAATATGAAGCTC+TGG - chr4_1:67046965-67046984 Msa0566060:intron 30.0%
! GTTCGATAAGAGTGTAAAAA+AGG + chr4_1:67047419-67047438 None:intergenic 30.0%
ATATTTGAATCTGTGCAGAA+GGG + chr4_1:67047461-67047480 None:intergenic 30.0%
TATATTTGAATCTGTGCAGA+AGG + chr4_1:67047462-67047481 None:intergenic 30.0%
!!! ATACTTGAAATTTTTCAGGG+AGG - chr4_1:67047537-67047556 Msa0566060:intron 30.0%
ATATTCTTGGTCAAGTACAT+GGG - chr4_1:67047980-67047999 Msa0566060:intron 30.0%
!!! CAGTTGATTTTAACTTATGC+AGG + chr4_1:67048084-67048103 None:intergenic 30.0%
GCTTATAGAATAGTTAGATG+AGG + chr4_1:67048133-67048152 None:intergenic 30.0%
AAGTAATAGTGTAATGCAAC+TGG - chr4_1:67048249-67048268 Msa0566060:intron 30.0%
!! ACTTTTGATAGCCAATATGA+AGG - chr4_1:67048371-67048390 Msa0566060:intron 30.0%
CATCTTGAATCTTTATTGCA+TGG - chr4_1:67048394-67048413 Msa0566060:intron 30.0%
CGAAAACCAATGAGTAAATA+AGG + chr4_1:67048534-67048553 None:intergenic 30.0%
TTCGAAATTCAATCAGAAAG+AGG - chr4_1:67048550-67048569 Msa0566060:intron 30.0%
ATCCAAAACACTTACAAGTT+TGG + chr4_1:67048806-67048825 None:intergenic 30.0%
! CATGCTTATGATTTTATAGG+TGG - chr4_1:67048841-67048860 Msa0566060:intron 30.0%
! TTTTGGTGAAATTGAAACTG+AGG - chr4_1:67048901-67048920 Msa0566060:CDS 30.0%
AGAGAAAACAATGTACTTCT+TGG - chr4_1:67049160-67049179 Msa0566060:intron 30.0%
AACTCTCATATATCAGTTTG+AGG - chr4_1:67049427-67049446 Msa0566060:intron 30.0%
ACTCTCATATATCAGTTTGA+GGG - chr4_1:67049428-67049447 Msa0566060:intron 30.0%
! CTTATGGTTAGGTTTTACTT+AGG - chr4_1:67049457-67049476 Msa0566060:intron 30.0%
! TATGGTTAGGTTTTACTTAG+GGG - chr4_1:67049459-67049478 Msa0566060:intron 30.0%
! CTTTTCCTTTCAAGATATCA+TGG - chr4_1:67049641-67049660 Msa0566060:intron 30.0%
ACAACAAGAAAGAATTCACA+TGG + chr4_1:67049670-67049689 None:intergenic 30.0%
!! AGTTCTTTGAAATCTATGAG+AGG - chr4_1:67049759-67049778 Msa0566060:intron 30.0%
!! AATTTTGAAAAGTCACTTCC+TGG + chr4_1:67049808-67049827 None:intergenic 30.0%
! GGAAGTGACTTTTCAAAATT+TGG - chr4_1:67049808-67049827 Msa0566060:intron 30.0%
TCATACTGAAATGCAAAAGA+CGG + chr4_1:67049838-67049857 None:intergenic 30.0%
TACACAGGTTATTGTTCATA+AGG + chr4_1:67049913-67049932 None:intergenic 30.0%
TTTCTTCATGAACTGATCTT+TGG - chr4_1:67049938-67049957 Msa0566060:intron 30.0%
!! AAAGGAACTTAGCTTTTCAA+AGG - chr4_1:67050011-67050030 Msa0566060:intron 30.0%
!! AAGGAACTTAGCTTTTCAAA+GGG - chr4_1:67050012-67050031 Msa0566060:intron 30.0%
GCCTAGAAAAAATAGATAAC+AGG + chr4_1:67050080-67050099 None:intergenic 30.0%
GATGAACAAATTGAATGTAG+AGG - chr4_1:67050380-67050399 Msa0566060:intron 30.0%
AACAAATTGAATGTAGAGGA+TGG - chr4_1:67050384-67050403 Msa0566060:intron 30.0%
!!! TGTGTCTTTTTTTGTGCTTA+TGG - chr4_1:67050608-67050627 Msa0566060:intron 30.0%
TTGGTTGAATGAAGAATGAT+AGG - chr4_1:67050640-67050659 Msa0566060:intron 30.0%
!!! ATAGGATTTTGAAGTAACTG+AGG - chr4_1:67050658-67050677 Msa0566060:intron 30.0%
!!! TAGGATTTTGAAGTAACTGA+GGG - chr4_1:67050659-67050678 Msa0566060:intron 30.0%
!! AAAAGAATTTTGATCCGACA+TGG + chr4_1:67050721-67050740 None:intergenic 30.0%
TTTGATAAAGATCACAGACA+CGG + chr4_1:67050831-67050850 None:intergenic 30.0%
ACAAATCATGTACATTTGAC+AGG + chr4_1:67050871-67050890 None:intergenic 30.0%
CAATATAAGACCATGTACAA+TGG - chr4_1:67050891-67050910 Msa0566060:five_prime_UTR 30.0%
TCTAACTTCAAATCCGAATC+TGG - chr4_1:67044650-67044669 Msa0566060:three_prime_UTR 35.0%
CTAACTTCAAATCCGAATCT+GGG - chr4_1:67044651-67044670 Msa0566060:three_prime_UTR 35.0%
TGAATGCTGTGTTATCTTGA+TGG - chr4_1:67044849-67044868 Msa0566060:three_prime_UTR 35.0%
AATGCAGAGACATCAACATA+TGG - chr4_1:67045012-67045031 Msa0566060:three_prime_UTR 35.0%
AGAAAAAATATCTACCCTCC+CGG + chr4_1:67045062-67045081 None:intergenic 35.0%
CCTACAATTATGAGCTTACA+AGG + chr4_1:67045136-67045155 None:intergenic 35.0%
CCTTGTAAGCTCATAATTGT+AGG - chr4_1:67045133-67045152 Msa0566060:intron 35.0%
GATTGTGAGTGACATTATTG+TGG - chr4_1:67045193-67045212 Msa0566060:intron 35.0%
ATTATTGTGGCTGTCAGATT+AGG - chr4_1:67045206-67045225 Msa0566060:intron 35.0%
CTTTGTAGTCAGATTCTCTA+CGG + chr4_1:67045512-67045531 None:intergenic 35.0%
GTGAATATGAAGAAGATCAG+GGG + chr4_1:67045640-67045659 None:intergenic 35.0%
GACAGCTATCATGAAGAAAT+TGG + chr4_1:67045695-67045714 None:intergenic 35.0%
GTATTGAGGGAACCAAAATA+AGG + chr4_1:67045844-67045863 None:intergenic 35.0%
!! TCAATATATGGGGGTATTGA+GGG + chr4_1:67045857-67045876 None:intergenic 35.0%
!! ATCAATATATGGGGGTATTG+AGG + chr4_1:67045858-67045877 None:intergenic 35.0%
TCCAGGATATCAATATATGG+GGG + chr4_1:67045866-67045885 None:intergenic 35.0%
AAAGAAATAAGGCCAAATCC+AGG + chr4_1:67045883-67045902 None:intergenic 35.0%
GAGACCATATAAATTGATGG+GGG - chr4_1:67045977-67045996 Msa0566060:intron 35.0%
AGACCATATAAATTGATGGG+GGG - chr4_1:67045978-67045997 Msa0566060:intron 35.0%
AAACCCCCCATCAATTTATA+TGG + chr4_1:67045984-67046003 None:intergenic 35.0%
AAACAATAGTCATGGTAGAC+AGG - chr4_1:67046305-67046324 Msa0566060:intron 35.0%
CAGTGACAACATATTAGCTA+AGG - chr4_1:67046373-67046392 Msa0566060:intron 35.0%
ACAGAGAGTGATATATAGCA+CGG + chr4_1:67046601-67046620 None:intergenic 35.0%
! ACTTATGCTGAAGTTTCTAG+TGG - chr4_1:67046837-67046856 Msa0566060:intron 35.0%
ACATGAAATCTGGTCATTCT+GGG + chr4_1:67046883-67046902 None:intergenic 35.0%
TGTGCCAATTGTCAAACAAT+TGG - chr4_1:67046900-67046919 Msa0566060:intron 35.0%
! GACTTTTGATACTATAGAGG+AGG - chr4_1:67047506-67047525 Msa0566060:intron 35.0%
ATCAAATGGTTTCAGTTTCC+AGG - chr4_1:67047604-67047623 Msa0566060:three_prime_UTR 35.0%
CCATTGATCATTTGTCTCAA+AGG + chr4_1:67047637-67047656 None:intergenic 35.0%
!! CCTTTGAGACAAATGATCAA+TGG - chr4_1:67047634-67047653 Msa0566060:three_prime_UTR 35.0%
ACACATGTAAGTCAAAAGCT+TGG - chr4_1:67047721-67047740 Msa0566060:intron 35.0%
TAAATAGAGGAAAAGAGACG+AGG - chr4_1:67047883-67047902 Msa0566060:intron 35.0%
!! AGGAAATACTCTGAAGTGAT+AGG - chr4_1:67047903-67047922 Msa0566060:intron 35.0%
GATATTCTTGGTCAAGTACA+TGG - chr4_1:67047979-67047998 Msa0566060:intron 35.0%
TATTCTTGGTCAAGTACATG+GGG - chr4_1:67047981-67048000 Msa0566060:intron 35.0%
GATTCAAGATGCCTTCATAT+TGG + chr4_1:67048385-67048404 None:intergenic 35.0%
! AGATTTCTAGAAGACAAGCA+CGG - chr4_1:67048573-67048592 Msa0566060:intron 35.0%
TTTACCTAGAACTGCCATAT+TGG + chr4_1:67048672-67048691 None:intergenic 35.0%
!! AGTTCTAGGTAAAGAAGCTT+CGG - chr4_1:67048679-67048698 Msa0566060:intron 35.0%
!! AGCAAAGACTGACTTTTCAA+AGG - chr4_1:67048729-67048748 Msa0566060:intron 35.0%
!!! TTTTCAAAGGCTTGTTGCTA+TGG - chr4_1:67048742-67048761 Msa0566060:intron 35.0%
! TGCCAAACTTGTAAGTGTTT+TGG - chr4_1:67048801-67048820 Msa0566060:intron 35.0%
ACAATAGCAACCATCATCTT+AGG + chr4_1:67049211-67049230 None:intergenic 35.0%
! AGTTTGAGGGATTTGACTTA+TGG - chr4_1:67049441-67049460 Msa0566060:intron 35.0%
! TTTTGGTAAGCATAGAGACT+CGG + chr4_1:67050151-67050170 None:intergenic 35.0%
AAAGAATGAACAGCACAAAG+TGG + chr4_1:67050316-67050335 None:intergenic 35.0%
!!! TTTGCTTTGTCTCCCTTTTT+TGG - chr4_1:67050333-67050352 Msa0566060:CDS 35.0%
TGCAACGCAAAACCAAAAAA+GGG + chr4_1:67050348-67050367 None:intergenic 35.0%
ATGCAACGCAAAACCAAAAA+AGG + chr4_1:67050349-67050368 None:intergenic 35.0%
AAATTGAATGTAGAGGATGG+TGG - chr4_1:67050387-67050406 Msa0566060:intron 35.0%
! GTGCTTATGGTAATGTCTAT+TGG - chr4_1:67050621-67050640 Msa0566060:intron 35.0%
!! TTGTTTCCTAAAAGCGTCCA+TGG + chr4_1:67044544-67044563 None:intergenic 40.0%
GCAAGTTGTCAAACAACAAC+AGG - chr4_1:67044581-67044600 Msa0566060:three_prime_UTR 40.0%
GGTAAACTTGTGAAATGGGT+CGG + chr4_1:67044619-67044638 None:intergenic 40.0%
ATAAAACAATTCAGCGGCAG+CGG - chr4_1:67044950-67044969 Msa0566060:three_prime_UTR 40.0%
TTATGAGAGCTCAGATGTTG+TGG - chr4_1:67044973-67044992 Msa0566060:three_prime_UTR 40.0%
AACATATGGAGAAGCTGTAC+AGG - chr4_1:67045026-67045045 Msa0566060:three_prime_UTR 40.0%
ACATATGGAGAAGCTGTACA+GGG - chr4_1:67045027-67045046 Msa0566060:three_prime_UTR 40.0%
AAGTGAGTTGCTCACATTAG+AGG - chr4_1:67045465-67045484 Msa0566060:intron 40.0%
ACCCAAACTTTCCGAAAAGA+CGG - chr4_1:67045607-67045626 Msa0566060:intron 40.0%
! ACCGTCTTTTCGGAAAGTTT+GGG + chr4_1:67045611-67045630 None:intergenic 40.0%
AATATGAAGAAGATCAGGGG+TGG + chr4_1:67045637-67045656 None:intergenic 40.0%
TGATAGCTGTCCATTCTGTT+AGG - chr4_1:67045704-67045723 Msa0566060:intron 40.0%
AGTGAATGGACCTAACAGAA+TGG + chr4_1:67045717-67045736 None:intergenic 40.0%
GAATAGGAATTCTGCTAGAG+AGG + chr4_1:67045741-67045760 None:intergenic 40.0%
! ATAGAGGCGTAATTGGGAAT+AGG + chr4_1:67045757-67045776 None:intergenic 40.0%
! AAGGGAATAGAGGCGTAATT+GGG + chr4_1:67045763-67045782 None:intergenic 40.0%
! AAAGGGAATAGAGGCGTAAT+TGG + chr4_1:67045764-67045783 None:intergenic 40.0%
CTTCTGTAGACTTTGATTGG+AGG - chr4_1:67045791-67045810 Msa0566060:intron 40.0%
ACCCCCATATATTGATATCC+TGG - chr4_1:67045862-67045881 Msa0566060:intron 40.0%
ACAAAACTGTCATCTGATGC+AGG - chr4_1:67046119-67046138 Msa0566060:intron 40.0%
!! CTTTTTCCTGTGATTTGTGG+TGG - chr4_1:67046231-67046250 Msa0566060:intron 40.0%
GACAGGAACAAAACTTTCTG+AGG - chr4_1:67046322-67046341 Msa0566060:intron 40.0%
TGCTCGCAAACATGTAGAAA+AGG - chr4_1:67046415-67046434 Msa0566060:three_prime_UTR 40.0%
! AGGAGCACGAAGAATTGAAT+CGG - chr4_1:67046435-67046454 Msa0566060:three_prime_UTR 40.0%
CACATGAAATCTGGTCATTC+TGG + chr4_1:67046884-67046903 None:intergenic 40.0%
GACAATTGGCACATGAAATC+TGG + chr4_1:67046893-67046912 None:intergenic 40.0%
CTGGCCAATTGTTTGACAAT+TGG + chr4_1:67046907-67046926 None:intergenic 40.0%
TGTTACCTTACCTTATCACG+TGG - chr4_1:67047064-67047083 Msa0566060:intron 40.0%
! AAAAAAGGGAGCACAGTAAG+AGG + chr4_1:67047404-67047423 None:intergenic 40.0%
ATGGTTTCAGTTTCCAGGTT+TGG - chr4_1:67047609-67047628 Msa0566060:three_prime_UTR 40.0%
ATCTTGCTCAACGGTATAGT+CGG - chr4_1:67047680-67047699 Msa0566060:intron 40.0%
ACAGGTGTAATACTGATAGG+CGG + chr4_1:67048300-67048319 None:intergenic 40.0%
CACACAGGTGTAATACTGAT+AGG + chr4_1:67048303-67048322 None:intergenic 40.0%
! GATTTCTAGAAGACAAGCAC+GGG - chr4_1:67048574-67048593 Msa0566060:intron 40.0%
AAAGCCAATATGGCAGTTCT+AGG - chr4_1:67048665-67048684 Msa0566060:intron 40.0%
!! TCAAGAGTTGCAGCCATTTT+TGG - chr4_1:67048884-67048903 Msa0566060:CDS 40.0%
CGATTCTTTCTTCTGTCTGT+CGG + chr4_1:67049108-67049127 None:intergenic 40.0%
CGACAGACAGAAGAAAGAAT+CGG - chr4_1:67049106-67049125 Msa0566060:CDS 40.0%
! TGTTTTCTCTGAGCCATTCT+GGG + chr4_1:67049150-67049169 None:intergenic 40.0%
! TTGTTTTCTCTGAGCCATTC+TGG + chr4_1:67049151-67049170 None:intergenic 40.0%
AACAATGTACTTCTTGGCTG+AGG - chr4_1:67049166-67049185 Msa0566060:intron 40.0%
! GAGGGATTTGACTTATGGTT+AGG - chr4_1:67049446-67049465 Msa0566060:intron 40.0%
GGAACCCATGATATCTTGAA+AGG + chr4_1:67049649-67049668 None:intergenic 40.0%
TCTATGAGAGGAAGCTTCAA+AGG - chr4_1:67049771-67049790 Msa0566060:intron 40.0%
CTATGAGAGGAAGCTTCAAA+GGG - chr4_1:67049772-67049791 Msa0566060:intron 40.0%
CTTCATGAACTGATCTTTGG+TGG - chr4_1:67049941-67049960 Msa0566060:intron 40.0%
! TTTTCCGTTTCAGCATCGTA+AGG + chr4_1:67049994-67050013 None:intergenic 40.0%
TTACGATGCTGAAACGGAAA+AGG - chr4_1:67049993-67050012 Msa0566060:intron 40.0%
GAAGGAGAATGCAATGGTAA+AGG - chr4_1:67050209-67050228 Msa0566060:intron 40.0%
GAGAATGCAATGGTAAAGGA+GGG - chr4_1:67050213-67050232 Msa0566060:intron 40.0%
ATTCTGTGATAACAGACGAG+AGG + chr4_1:67050430-67050449 None:intergenic 40.0%
AAGAAAAATGTGTCCAGCTG+TGG - chr4_1:67050456-67050475 Msa0566060:intron 40.0%
AGAAAAATGTGTCCAGCTGT+GGG - chr4_1:67050457-67050476 Msa0566060:intron 40.0%
TAATCTGCAAGAGTGGAGTA+GGG - chr4_1:67050685-67050704 Msa0566060:intron 40.0%
ATTGGAATTTGAGCTAGTGC+AGG + chr4_1:67050774-67050793 None:intergenic 40.0%
!! TTTCCTAAAAGCGTCCATGG+CGG + chr4_1:67044541-67044560 None:intergenic 45.0%
! ACGGATTACTAGAGCGAATC+TGG + chr4_1:67045493-67045512 None:intergenic 45.0%
! CTTTTCGGAAAGTTTGGGTG+TGG + chr4_1:67045606-67045625 None:intergenic 45.0%
! GACCGTCTTTTCGGAAAGTT+TGG + chr4_1:67045612-67045631 None:intergenic 45.0%
TCTGCTAGAGAGGAAGTGAA+TGG + chr4_1:67045731-67045750 None:intergenic 45.0%
GATTGGAGGCCAAATTGTTG+CGG - chr4_1:67045805-67045824 Msa0566060:intron 45.0%
ATTGGAGGCCAAATTGTTGC+GGG - chr4_1:67045806-67045825 Msa0566060:intron 45.0%
CTTAAGTGAGGTAGTGAGAG+AGG - chr4_1:67045952-67045971 Msa0566060:intron 45.0%
CTAAGTCCACCACAAATCAC+AGG + chr4_1:67046240-67046259 None:intergenic 45.0%
!! TCTGAGGAGTGCTGTAGATA+TGG - chr4_1:67046338-67046357 Msa0566060:intron 45.0%
AGCATCGCCATATACTGATG+CGG + chr4_1:67046399-67046418 None:intergenic 45.0%
!! GAATCGGCTTTTATCTTCCC+AGG - chr4_1:67046451-67046470 Msa0566060:intron 45.0%
CTGTCTGCATGACATGCATT+GGG - chr4_1:67047124-67047143 Msa0566060:intron 45.0%
TGTCTCAAAGGATCCAAACC+TGG + chr4_1:67047625-67047644 None:intergenic 45.0%
AATGATCAATGGCCCACCTT+TGG - chr4_1:67047645-67047664 Msa0566060:three_prime_UTR 45.0%
GACTATACCGTTGAGCAAGA+TGG + chr4_1:67047681-67047700 None:intergenic 45.0%
AGGTGTAATACTGATAGGCG+GGG + chr4_1:67048298-67048317 None:intergenic 45.0%
CAGGTGTAATACTGATAGGC+GGG + chr4_1:67048299-67048318 None:intergenic 45.0%
GACAGCTATGTAATGCACAC+AGG + chr4_1:67048318-67048337 None:intergenic 45.0%
! TAGAAGACAAGCACGGGTTA+GGG - chr4_1:67048580-67048599 Msa0566060:intron 45.0%
TAAAGAAGCTTCGGCTGCAT+TGG - chr4_1:67048688-67048707 Msa0566060:intron 45.0%
! ATGAACTGATCTTTGGTGGC+TGG - chr4_1:67049945-67049964 Msa0566060:intron 45.0%
GCATCCTTACGATGCTGAAA+CGG - chr4_1:67049987-67050006 Msa0566060:intron 45.0%
AGGGTGACTTTATTGTCGTG+CGG - chr4_1:67050031-67050050 Msa0566060:intron 45.0%
TGACTTTATTGTCGTGCGGA+AGG - chr4_1:67050035-67050054 Msa0566060:intron 45.0%
TTACACAGGTGAGCCAAACA+GGG - chr4_1:67050180-67050199 Msa0566060:intron 45.0%
TGGTCAGAAGGAGAATGCAA+TGG - chr4_1:67050203-67050222 Msa0566060:intron 45.0%
GGAGAATGCAATGGTAAAGG+AGG - chr4_1:67050212-67050231 Msa0566060:intron 45.0%
AATGCAATGGTAAAGGAGGG+TGG - chr4_1:67050216-67050235 Msa0566060:intron 45.0%
! CTTCTGGCTACGTGGAAAAA+CGG - chr4_1:67050243-67050262 Msa0566060:intron 45.0%
GAGAATCCCATCTAGCAACA+TGG - chr4_1:67050268-67050287 Msa0566060:CDS 45.0%
CATGGCTGGAGAAGTTTACT+AGG - chr4_1:67050286-67050305 Msa0566060:CDS 45.0%
!! GTAGAGGATGGTGGAATTGA+TGG - chr4_1:67050396-67050415 Msa0566060:intron 45.0%
GAAAAATGTGTCCAGCTGTG+GGG - chr4_1:67050458-67050477 Msa0566060:intron 45.0%
TATGTAAGTTACCCCACAGC+TGG + chr4_1:67050472-67050491 None:intergenic 45.0%
GCTGTGGGGTAACTTACATA+CGG - chr4_1:67050472-67050491 Msa0566060:intron 45.0%
GTAATCTGCAAGAGTGGAGT+AGG - chr4_1:67050684-67050703 Msa0566060:intron 45.0%
GACAGGTATCACATTGCAGA+GGG + chr4_1:67050854-67050873 None:intergenic 45.0%
TGACAGGTATCACATTGCAG+AGG + chr4_1:67050855-67050874 None:intergenic 45.0%
!!! ATTATAATTTTAATTATTTC+GGG + chr4_1:67048433-67048452 None:intergenic 5.0%
!! ATTATTTAATTAATCAATTA+TGG - chr4_1:67050943-67050962 Msa0566060:five_prime_UTR 5.0%
! CTAATGGGCCCGCAACAATT+TGG + chr4_1:67045817-67045836 None:intergenic 50.0%
GCTAAGGCCGCATCAGTATA+TGG - chr4_1:67046389-67046408 Msa0566060:intron 50.0%
TGCAGCCACGTGATAAGGTA+AGG + chr4_1:67047072-67047091 None:intergenic 50.0%
CTAAGTGCAGCCACGTGATA+AGG + chr4_1:67047077-67047096 None:intergenic 50.0%
CTTATCACGTGGCTGCACTT+AGG - chr4_1:67047075-67047094 Msa0566060:intron 50.0%
GCATGTCATGCAGACAGCAA+GGG + chr4_1:67047121-67047140 None:intergenic 50.0%
TGCATGTCATGCAGACAGCA+AGG + chr4_1:67047122-67047141 None:intergenic 50.0%
GCTGTCTGCATGACATGCAT+TGG - chr4_1:67047123-67047142 Msa0566060:intron 50.0%
TGCATGACATGCATTGGGTG+TGG - chr4_1:67047129-67047148 Msa0566060:intron 50.0%
GCATGACATGCATTGGGTGT+GGG - chr4_1:67047130-67047149 Msa0566060:intron 50.0%
CATGACATGCATTGGGTGTG+GGG - chr4_1:67047131-67047150 Msa0566060:intron 50.0%
ATGACATGCATTGGGTGTGG+GGG - chr4_1:67047132-67047151 Msa0566060:intron 50.0%
!! GTGCAGAAGGGTGTCGAAAA+TGG + chr4_1:67047449-67047468 None:intergenic 50.0%
ATGCTCGCCATCTTGCTCAA+CGG - chr4_1:67047671-67047690 Msa0566060:intron 50.0%
CTAGAAGACAAGCACGGGTT+AGG - chr4_1:67048579-67048598 Msa0566060:intron 50.0%
GGAATCTCAAACTGCTGAGC+AGG - chr4_1:67048601-67048620 Msa0566060:intron 50.0%
GCAGGAGCTGAAAGCCAATA+TGG - chr4_1:67048655-67048674 Msa0566060:intron 50.0%
! TCTGGGACATAACGACTGGA+GGG + chr4_1:67049133-67049152 None:intergenic 50.0%
!! TTCTGGGACATAACGACTGG+AGG + chr4_1:67049134-67049153 None:intergenic 50.0%
!! CCATTCTGGGACATAACGAC+TGG + chr4_1:67049137-67049156 None:intergenic 50.0%
CCAGTCGTTATGTCCCAGAA+TGG - chr4_1:67049134-67049153 Msa0566060:CDS 50.0%
TCAAAGGGCGAGTAGTATCC+AGG - chr4_1:67049787-67049806 Msa0566060:intron 50.0%
GTTACACAGGTGAGCCAAAC+AGG - chr4_1:67050179-67050198 Msa0566060:intron 50.0%
AAAGGAGGGTGGTTTCCTTC+TGG - chr4_1:67050227-67050246 Msa0566060:intron 50.0%
! CGTTTTTCCACGTAGCCAGA+AGG + chr4_1:67050245-67050264 None:intergenic 50.0%
ATCCCATCTAGCAACATGGC+TGG - chr4_1:67050272-67050291 Msa0566060:CDS 50.0%
CTCCAGCCATGTTGCTAGAT+GGG + chr4_1:67050277-67050296 None:intergenic 50.0%
TCTCCAGCCATGTTGCTAGA+TGG + chr4_1:67050278-67050297 None:intergenic 50.0%
GTGGGGTAACTTACATACGG+TGG - chr4_1:67050475-67050494 Msa0566060:intron 50.0%
AGGGCTGTAATCTGCAAGAG+TGG - chr4_1:67050678-67050697 Msa0566060:intron 50.0%
TCACTGTCACTGTACCGCCA+TGG - chr4_1:67044524-67044543 Msa0566060:three_prime_UTR 55.0%
! GTACCGCCATGGACGCTTTT+AGG - chr4_1:67044535-67044554 Msa0566060:three_prime_UTR 55.0%
! GGGGTGGTAGACCGTCTTTT+CGG + chr4_1:67045621-67045640 None:intergenic 55.0%
TGACATGCATTGGGTGTGGG+GGG - chr4_1:67047133-67047152 Msa0566060:intron 55.0%
GATCAATGGCCCACCTTTGG+AGG - chr4_1:67047648-67047667 Msa0566060:three_prime_UTR 55.0%
AGATGGCGAGCATCCTCCAA+AGG + chr4_1:67047664-67047683 None:intergenic 55.0%
TGCCAAACTGCATGCTGCAG+AGG - chr4_1:67048625-67048644 Msa0566060:intron 55.0%
TGCCTCTGCAGCATGCAGTT+TGG + chr4_1:67048630-67048649 None:intergenic 55.0%
TGCTGCAGAGGCAAAGATGC+AGG - chr4_1:67048637-67048656 Msa0566060:intron 55.0%
CTGGGACATAACGACTGGAG+GGG + chr4_1:67049132-67049151 None:intergenic 55.0%
! CGGTTCTGACGATGTGAGTG+AGG - chr4_1:67049887-67049906 Msa0566060:intron 55.0%
AGCCAAACAGGGTGGTCAGA+AGG - chr4_1:67050191-67050210 Msa0566060:intron 55.0%
CTCCTTCTGACCACCCTGTT+TGG + chr4_1:67050196-67050215 None:intergenic 55.0%
! GTGGTTTCCTTCTGGCTACG+TGG - chr4_1:67050235-67050254 Msa0566060:intron 55.0%
AGAGTGGAGTAGGGTGAGTG+AGG - chr4_1:67050694-67050713 Msa0566060:intron 55.0%
AGGGTGAGTGAGGACCATGT+CGG - chr4_1:67050704-67050723 Msa0566060:intron 55.0%
GACATGCATTGGGTGTGGGG+GGG - chr4_1:67047134-67047153 Msa0566060:intron 60.0%
ACATGCATTGGGTGTGGGGG+GGG - chr4_1:67047135-67047154 Msa0566060:intron 60.0%
GGCGAGCATCCTCCAAAGGT+GGG + chr4_1:67047660-67047679 None:intergenic 60.0%
TGGCGAGCATCCTCCAAAGG+TGG + chr4_1:67047661-67047680 None:intergenic 60.0%
GTGGCTGGTGCATCTCTTGC+AGG - chr4_1:67049960-67049979 Msa0566060:intron 60.0%
CACAGGTGAGCCAAACAGGG+TGG - chr4_1:67050183-67050202 Msa0566060:intron 60.0%
CTGTACAGGGCCACTCGTGC+CGG - chr4_1:67045040-67045059 Msa0566060:three_prime_UTR 65.0%
TGTACAGGGCCACTCGTGCC+GGG - chr4_1:67045041-67045060 Msa0566060:three_prime_UTR 65.0%
ATCTACCCTCCCGGCACGAG+TGG + chr4_1:67045053-67045072 None:intergenic 65.0%
CATGCATTGGGTGTGGGGGG+GGG - chr4_1:67047136-67047155 Msa0566060:intron 65.0%
ATGCATTGGGTGTGGGGGGG+GGG - chr4_1:67047137-67047156 Msa0566060:intron 65.0%
TGCATTGGGTGTGGGGGGGG+GGG - chr4_1:67047138-67047157 Msa0566060:intron 70.0%
ACAGGGCCACTCGTGCCGGG+AGG - chr4_1:67045044-67045063 Msa0566060:three_prime_UTR 75.0%
CAGGGCCACTCGTGCCGGGA+GGG - chr4_1:67045045-67045064 Msa0566060:three_prime_UTR 75.0%
GCATTGGGTGTGGGGGGGGG+GGG - chr4_1:67047139-67047158 Msa0566060:intron 75.0%
CATTGGGTGTGGGGGGGGGG+GGG - chr4_1:67047140-67047159 Msa0566060:intron 75.0%
ATTGGGTGTGGGGGGGGGGG+GGG - chr4_1:67047141-67047160 Msa0566060:intron 75.0%
! TTGGGTGTGGGGGGGGGGGG+GGG - chr4_1:67047142-67047161 Msa0566060:intron 80.0%
! TGGGTGTGGGGGGGGGGGGG+GGG - chr4_1:67047143-67047162 Msa0566060:intron 85.0%
! GGGTGTGGGGGGGGGGGGGG+GGG - chr4_1:67047144-67047163 Msa0566060:intron 90.0%
! GGTGTGGGGGGGGGGGGGGG+GGG - chr4_1:67047145-67047164 Msa0566060:intron 90.0%
! GTGTGGGGGGGGGGGGGGGG+GGG - chr4_1:67047146-67047165 Msa0566060:intron 90.0%
! TGTGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047147-67047166 Msa0566060:intron 90.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047148-67047167 Msa0566060:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:67047149-67047168 Msa0566060:intron 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 67044344 67050971 67044344 ID=Msa0566060;Name=Msa0566060
chr4_1 mRNA 67044344 67050971 67044344 ID=Msa0566060-mRNA-1;Parent=Msa0566060;Name=Msa0566060-mRNA-1;_AED=0.27;_eAED=0.27;_QI=199|1|1|1|0.88|1|10|1296|137
chr4_1 exon 67044344 67045127 67044344 ID=Msa0566060-mRNA-1:exon:21911;Parent=Msa0566060-mRNA-1
chr4_1 exon 67045259 67045333 67045259 ID=Msa0566060-mRNA-1:exon:21910;Parent=Msa0566060-mRNA-1
chr4_1 exon 67046128 67046217 67046128 ID=Msa0566060-mRNA-1:exon:21909;Parent=Msa0566060-mRNA-1
chr4_1 exon 67046393 67046455 67046393 ID=Msa0566060-mRNA-1:exon:21908;Parent=Msa0566060-mRNA-1
chr4_1 exon 67046552 67046749 67046552 ID=Msa0566060-mRNA-1:exon:21907;Parent=Msa0566060-mRNA-1
chr4_1 exon 67047589 67047689 67047589 ID=Msa0566060-mRNA-1:exon:21906;Parent=Msa0566060-mRNA-1
chr4_1 exon 67048843 67048988 67048843 ID=Msa0566060-mRNA-1:exon:21905;Parent=Msa0566060-mRNA-1
chr4_1 exon 67049105 67049174 67049105 ID=Msa0566060-mRNA-1:exon:21904;Parent=Msa0566060-mRNA-1
chr4_1 exon 67050249 67050371 67050249 ID=Msa0566060-mRNA-1:exon:21903;Parent=Msa0566060-mRNA-1
chr4_1 exon 67050713 67050971 67050713 ID=Msa0566060-mRNA-1:exon:21902;Parent=Msa0566060-mRNA-1
chr4_1 five_prime_UTR 67050773 67050971 67050773 ID=Msa0566060-mRNA-1:five_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 CDS 67050713 67050772 67050713 ID=Msa0566060-mRNA-1:cds;Parent=Msa0566060-mRNA-1
chr4_1 CDS 67050249 67050371 67050249 ID=Msa0566060-mRNA-1:cds;Parent=Msa0566060-mRNA-1
chr4_1 CDS 67049105 67049174 67049105 ID=Msa0566060-mRNA-1:cds;Parent=Msa0566060-mRNA-1
chr4_1 CDS 67048843 67048988 67048843 ID=Msa0566060-mRNA-1:cds;Parent=Msa0566060-mRNA-1
chr4_1 CDS 67047675 67047689 67047675 ID=Msa0566060-mRNA-1:cds;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67047589 67047674 67047589 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67046552 67046749 67046552 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67046393 67046455 67046393 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67046128 67046217 67046128 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67045259 67045333 67045259 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
chr4_1 three_prime_UTR 67044344 67045127 67044344 ID=Msa0566060-mRNA-1:three_prime_utr;Parent=Msa0566060-mRNA-1
Gene Sequence

>Msa0566060

ATGGACGCTTTTAGGAAACAAGCTAGCAAGCTCAGAGAGCAAGTTGTCAAACAACAACAGGCTGTAATAAAACAATTCAGCGGCAGCGGTTATGAGAGCTCAGATGTTGTGGTTATTGATGAAGTTGAAATGCAGAGACATCAACATATGGAGAAGCTGTACAGGGCCACTCGTGCCGGGAGGGACTTCCAAAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATATCTTATAAGCATATTGAAACAGGAACAAAACTTTCTGAGGAGTGCTGTAGATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCCGCATCAGTATATGGCGATGCTCGCAAACATGTAGAAAAGGAGCACGAAGAATTGAATCGGCTTTTATCTTCCCAGGTTTGGATCCTTTGA

Protein sequence

>Msa0566060

MDAFRKQASKLREQVVKQQQAVIKQFSGSGYESSDVVVIDEVEMQRHQHMEKLYRATRAGRDFQKEIVKAAETFTAISYKHIETGTKLSEECCRYGAENNSDNILAKAASVYGDARKHVEKEHEELNRLLSSQVWIL*