Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702000 | XP_039685319.1 | 99.425 | 348 | 2 | 0 | 1 | 348 | 1 | 348 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702000 | sp|Q8L7W0|SH3P3_ARATH | 71.795 | 351 | 96 | 1 | 1 | 348 | 1 | 351 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702000 | G7L808 | 99.425 | 348 | 2 | 0 | 1 | 348 | 1 | 348 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618240 | Msa0702000 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
| Msa0702000 | Msa1072960 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
| Msa0702000 | Msa1160910 | 0.814204 | 1.735729e-51 | -8.615850e-47 |
| Msa0164610 | Msa0702000 | 0.822350 | 2.483183e-53 | -8.615850e-47 |
| Msa0307280 | Msa0702000 | 0.818910 | 1.531504e-52 | -8.615850e-47 |
| Msa0566060 | Msa0702000 | 0.867140 | 1.704339e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702000 | MtrunA17_Chr8g0380121 | 99.425 | 348 | 2 | 0 | 1 | 348 | 1 | 348 | 0.0 | 715 |
| Msa0702000 | MtrunA17_Chr3g0145091 | 53.763 | 372 | 147 | 7 | 1 | 348 | 1 | 371 | 5.19e-127 | 369 |
| Msa0702000 | MtrunA17_Chr4g0035851 | 51.475 | 373 | 155 | 5 | 1 | 348 | 1 | 372 | 9.15e-117 | 342 |
| Msa0702000 | MtrunA17_Chr5g0408971 | 38.692 | 367 | 198 | 6 | 1 | 343 | 1 | 364 | 6.06e-91 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702000 | AT4G18060.1 | 71.795 | 351 | 96 | 1 | 1 | 348 | 1 | 351 | 0.0 | 544 |
| Msa0702000 | AT4G34660.1 | 48.387 | 372 | 164 | 6 | 1 | 348 | 1 | 368 | 2.02e-119 | 349 |
| Msa0702000 | AT4G34660.2 | 45.968 | 372 | 150 | 6 | 1 | 348 | 1 | 345 | 1.10e-110 | 326 |
| Msa0702000 | AT4G34660.3 | 47.578 | 351 | 147 | 5 | 1 | 348 | 1 | 317 | 2.11e-110 | 325 |
| Msa0702000 | AT1G31440.1 | 42.537 | 268 | 149 | 3 | 1 | 266 | 1 | 265 | 1.58e-65 | 214 |
| Msa0702000 | AT1G31440.1 | 52.000 | 75 | 32 | 1 | 269 | 343 | 361 | 431 | 1.30e-21 | 95.5 |
| Msa0702000 | AT4G39020.1 | 46.479 | 71 | 37 | 1 | 272 | 341 | 93 | 163 | 4.62e-18 | 80.9 |
Find 101 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTCTGACCACCCTGTT+TGG | 0.277296 | 4_4:+73444233 | None:intergenic |
| CTAGAGTAGAAATGTATAAT+TGG | 0.299207 | 4_4:+73443637 | None:intergenic |
| AAAGGAGGGTGGTTTCCTTC+TGG | 0.310065 | 4_4:-73444199 | Msa0702000:CDS |
| TTTACCTAGAACTGCCATAT+TGG | 0.330252 | 4_4:+73445759 | None:intergenic |
| GTGCTTATGGTAATGTCTAT+TGG | 0.330383 | 4_4:-73443805 | Msa0702000:three_prime_UTR |
| AGAGAAAACAATGTACTTCT+TGG | 0.347005 | 4_4:-73445262 | Msa0702000:CDS |
| GTTACACAGGTGAGCCAAAC+AGG | 0.349387 | 4_4:-73444247 | Msa0702000:intron |
| TCTCCAGCCATGTTGCTAGA+TGG | 0.356206 | 4_4:+73444151 | None:intergenic |
| CTAGAAGACAAGCACGGGTT+AGG | 0.357945 | 4_4:-73445849 | Msa0702000:CDS |
| GTAGAGGATGGTGGAATTGA+TGG | 0.368031 | 4_4:-73444030 | Msa0702000:three_prime_UTR |
| TCTGAGGAGTGCTGTAGATA+TGG | 0.376609 | 4_4:-73448058 | Msa0702000:CDS |
| GCTAAGGCCGCATCAGTATA+TGG | 0.376664 | 4_4:-73448007 | Msa0702000:CDS |
| AAAGCCAATATGGCAGTTCT+AGG | 0.377743 | 4_4:-73445763 | Msa0702000:CDS |
| ATAACAACATAACATTTGAT+TGG | 0.387803 | 4_4:-73449920 | Msa0702000:five_prime_UTR |
| TGCCTCTGCAGCATGCAGTT+TGG | 0.390750 | 4_4:+73445801 | None:intergenic |
| GCAGGAGCTGAAAGCCAATA+TGG | 0.397351 | 4_4:-73445773 | Msa0702000:CDS |
| CGATTCTTTCTTCTGTCTGT+CGG | 0.410684 | 4_4:+73445317 | None:intergenic |
| CATGGCTGGAGAAGTTTACT+AGG | 0.414641 | 4_4:-73444140 | Msa0702000:exon |
| GCAAGTTGTCAAACAACAAC+AGG | 0.420146 | 4_4:-73449823 | Msa0702000:intron |
| TGCTGCAGAGGCAAAGATGC+AGG | 0.422100 | 4_4:-73445791 | Msa0702000:CDS |
| CTCCAGCCATGTTGCTAGAT+GGG | 0.428147 | 4_4:+73444152 | None:intergenic |
| TCTTATAAGCATATTGAAAC+AGG | 0.429719 | 4_4:-73448207 | Msa0702000:intron |
| AATGATCAATGGCCCACCTT+TGG | 0.437837 | 4_4:-73446783 | Msa0702000:CDS |
| TTGGTTGAATGAAGAATGAT+AGG | 0.443623 | 4_4:-73443786 | Msa0702000:three_prime_UTR |
| AACATATGGAGAAGCTGTAC+AGG | 0.447502 | 4_4:-73449376 | Msa0702000:CDS |
| CTGTACAGGGCCACTCGTGC+CGG | 0.450031 | 4_4:-73449362 | Msa0702000:CDS |
| GATCAATGGCCCACCTTTGG+AGG | 0.457825 | 4_4:-73446780 | Msa0702000:CDS |
| TAGAAGACAAGCACGGGTTA+GGG | 0.473006 | 4_4:-73445848 | Msa0702000:CDS |
| ATTCAAAGAAGATGAACAAA+AGG | 0.473270 | 4_4:-73444056 | Msa0702000:three_prime_UTR |
| GTAATCTGCAAGAGTGGAGT+AGG | 0.484711 | 4_4:-73443742 | Msa0702000:three_prime_UTR |
| TGCTCGCAAACATGTAGAAA+AGG | 0.487145 | 4_4:-73447981 | Msa0702000:CDS |
| TAAAGAAGCTTCGGCTGCAT+TGG | 0.487250 | 4_4:-73445740 | Msa0702000:CDS |
| AGTTCTAGGTAAAGAAGCTT+CGG | 0.491125 | 4_4:-73445749 | Msa0702000:CDS |
| TGTACAGGGCCACTCGTGCC+GGG | 0.491956 | 4_4:-73449361 | Msa0702000:CDS |
| ACAAATCATGTACATTTGAC+AGG | 0.500089 | 4_4:+73443558 | None:intergenic |
| GGAATCTCAAACTGCTGAGC+AGG | 0.503789 | 4_4:-73445827 | Msa0702000:CDS |
| TTACGATGCTGAAACGGAAA+AGG | 0.507521 | 4_4:-73444433 | Msa0702000:CDS |
| GCATCCTTACGATGCTGAAA+CGG | 0.514169 | 4_4:-73444439 | Msa0702000:CDS |
| CCATTGATCATTTGTCTCAA+AGG | 0.516154 | 4_4:+73446794 | None:intergenic |
| GGAGAATGCAATGGTAAAGG+AGG | 0.517024 | 4_4:-73444214 | Msa0702000:CDS |
| ATCCCATCTAGCAACATGGC+TGG | 0.518734 | 4_4:-73444154 | Msa0702000:CDS |
| AGGAGCACGAAGAATTGAAT+CGG | 0.522277 | 4_4:-73447961 | Msa0702000:CDS |
| AATGCAGAGACATCAACATA+TGG | 0.529225 | 4_4:-73449390 | Msa0702000:CDS |
| CCTTTGAGACAAATGATCAA+TGG | 0.536520 | 4_4:-73446794 | Msa0702000:CDS |
| ATTGGAATTTGAGCTAGTGC+AGG | 0.543842 | 4_4:+73443655 | None:intergenic |
| AGCCAAACAGGGTGGTCAGA+AGG | 0.549155 | 4_4:-73444235 | Msa0702000:CDS |
| CGACAGACAGAAGAAAGAAT+CGG | 0.549964 | 4_4:-73445316 | Msa0702000:CDS |
| CAGGGCCACTCGTGCCGGGA+GGG | 0.550379 | 4_4:-73449357 | Msa0702000:intron |
| GATGAACAAAAGGAATGTAG+AGG | 0.553167 | 4_4:-73444046 | Msa0702000:three_prime_UTR |
| TGACTTTATTGTCGTGCGGA+AGG | 0.554090 | 4_4:-73444391 | Msa0702000:intron |
| TTGTTTCCTAAAAGCGTCCA+TGG | 0.555831 | 4_4:+73449863 | None:intergenic |
| GAAGGAGAATGCAATGGTAA+AGG | 0.558279 | 4_4:-73444217 | Msa0702000:CDS |
| GACTATACCGTTGAGCAAGA+TGG | 0.558931 | 4_4:+73446750 | None:intergenic |
| ATAAAACAATTCAGCGGCAG+CGG | 0.560251 | 4_4:-73449452 | Msa0702000:CDS |
| AACAATGTACTTCTTGGCTG+AGG | 0.565631 | 4_4:-73445256 | Msa0702000:intron |
| TTATGAGAGCTCAGATGTTG+TGG | 0.566218 | 4_4:-73449429 | Msa0702000:CDS |
| TATGTAAGTTACCCCACAGC+TGG | 0.566545 | 4_4:+73443957 | None:intergenic |
| TGGCGAGCATCCTCCAAAGG+TGG | 0.568058 | 4_4:+73446770 | None:intergenic |
| GACAGGTATCACATTGCAGA+GGG | 0.568325 | 4_4:+73443575 | None:intergenic |
| TGCCAAACTGCATGCTGCAG+AGG | 0.569320 | 4_4:-73445803 | Msa0702000:CDS |
| ATCTTGCTCAACGGTATAGT+CGG | 0.569750 | 4_4:-73446748 | Msa0702000:CDS |
| AAAAGGAATGTAGAGGATGG+TGG | 0.572679 | 4_4:-73444039 | Msa0702000:three_prime_UTR |
| ATCTACCCTCCCGGCACGAG+TGG | 0.572718 | 4_4:+73449352 | None:intergenic |
| TTCAAATCAATCAATTACAA+AGG | 0.575367 | 4_4:+73443846 | None:intergenic |
| GATTTCTAGAAGACAAGCAC+GGG | 0.579843 | 4_4:-73445854 | Msa0702000:CDS |
| CCATTCTGGGACATAACGAC+TGG | 0.580436 | 4_4:+73445288 | None:intergenic |
| AACAAAAGGAATGTAGAGGA+TGG | 0.582996 | 4_4:-73444042 | Msa0702000:three_prime_UTR |
| GACAGGAACAAAACTTTCTG+AGG | 0.585432 | 4_4:-73448074 | Msa0702000:intron |
| GGCGAGCATCCTCCAAAGGT+GGG | 0.586656 | 4_4:+73446771 | None:intergenic |
| AGAGTGGAGTAGGGTGAGTG+AGG | 0.594788 | 4_4:-73443732 | Msa0702000:three_prime_UTR |
| ATTCTGTGATAACAGACAAG+AGG | 0.605004 | 4_4:+73443999 | None:intergenic |
| AGGGCTGTAATCTGCAAGAG+TGG | 0.605707 | 4_4:-73443748 | Msa0702000:three_prime_UTR |
| CCAGTCGTTATGTCCCAGAA+TGG | 0.605721 | 4_4:-73445288 | Msa0702000:CDS |
| TTCTGGGACATAACGACTGG+AGG | 0.607465 | 4_4:+73445291 | None:intergenic |
| AATGCAATGGTAAAGGAGGG+TGG | 0.612541 | 4_4:-73444210 | Msa0702000:CDS |
| CAGTGACAACATATTAGCTA+AGG | 0.621538 | 4_4:-73448023 | Msa0702000:CDS |
| GAGAATGCAATGGTAAAGGA+GGG | 0.624503 | 4_4:-73444213 | Msa0702000:CDS |
| TCACTGTCACTGTACCGCCA+TGG | 0.626505 | 4_4:-73449880 | Msa0702000:exon |
| AGATTTCTAGAAGACAAGCA+CGG | 0.627170 | 4_4:-73445855 | Msa0702000:CDS |
| AGATGGCGAGCATCCTCCAA+AGG | 0.629190 | 4_4:+73446767 | None:intergenic |
| GTGGTTTCCTTCTGGCTACG+TGG | 0.635363 | 4_4:-73444191 | Msa0702000:CDS |
| ATGCTCGCCATCTTGCTCAA+CGG | 0.635883 | 4_4:-73446757 | Msa0702000:CDS |
| TGACAGGTATCACATTGCAG+AGG | 0.638863 | 4_4:+73443574 | None:intergenic |
| TAATCTGCAAGAGTGGAGTA+GGG | 0.639250 | 4_4:-73443741 | Msa0702000:three_prime_UTR |
| TCTGGGACATAACGACTGGA+GGG | 0.639602 | 4_4:+73445292 | None:intergenic |
| GCTGTGGGGTAACTTACATA+CGG | 0.640281 | 4_4:-73443954 | Msa0702000:three_prime_UTR |
| ACATATGGAGAAGCTGTACA+GGG | 0.640293 | 4_4:-73449375 | Msa0702000:CDS |
| ACAGGGCCACTCGTGCCGGG+AGG | 0.642315 | 4_4:-73449358 | Msa0702000:CDS |
| GAGAATCCCATCTAGCAACA+TGG | 0.651891 | 4_4:-73444158 | Msa0702000:CDS |
| AAAGAATGAACAGCACAAAG+TGG | 0.659222 | 4_4:+73444113 | None:intergenic |
| TGGTCAGAAGGAGAATGCAA+TGG | 0.665150 | 4_4:-73444223 | Msa0702000:CDS |
| AGGGTGACTTTATTGTCGTG+CGG | 0.669680 | 4_4:-73444395 | Msa0702000:CDS |
| AGCATCGCCATATACTGATG+CGG | 0.677187 | 4_4:+73448000 | None:intergenic |
| TTACACAGGTGAGCCAAACA+GGG | 0.693041 | 4_4:-73444246 | Msa0702000:intron |
| CTGGGACATAACGACTGGAG+GGG | 0.697996 | 4_4:+73445293 | None:intergenic |
| GCTGTAATAAAACAATTCAG+CGG | 0.702826 | 4_4:-73449458 | Msa0702000:CDS |
| AGGGTGAGTGAGGACCATGT+CGG | 0.709227 | 4_4:-73443722 | Msa0702000:three_prime_UTR |
| CACAGGTGAGCCAAACAGGG+TGG | 0.732609 | 4_4:-73444243 | Msa0702000:intron |
| TTTGATAAAGATCACAGACA+CGG | 0.744802 | 4_4:+73443598 | None:intergenic |
| TTTCCTAAAAGCGTCCATGG+CGG | 0.761041 | 4_4:+73449866 | None:intergenic |
| GTGGGGTAACTTACATACGG+TGG | 0.770226 | 4_4:-73443951 | Msa0702000:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAATTTTAATTATTT+CGG | + | chr4_4:73447611-73447630 | None:intergenic | 0.0% |
| !! | AAAAAATTCAAAATTGAAAA+TGG | - | chr4_4:73443882-73443901 | Msa0702000:three_prime_UTR | 10.0% |
| !! | AAAAATTCAAAATTGAAAAT+GGG | - | chr4_4:73443883-73443902 | Msa0702000:three_prime_UTR | 10.0% |
| !!! | TATAGTTTTTTTTTTTTTTG+TGG | - | chr4_4:73445980-73445999 | Msa0702000:intron | 10.0% |
| !!! | TTATAATTTTAATTATTTCG+GGG | + | chr4_4:73447609-73447628 | None:intergenic | 10.0% |
| !!! | ATATTTTTATAATGATAATG+AGG | + | chr4_4:73448512-73448531 | None:intergenic | 10.0% |
| !!! | ATCTTAAAAAATTGTTTTTT+TGG | - | chr4_4:73449038-73449057 | Msa0702000:intron | 10.0% |
| !!! | GATTTCTAAAATTGATTTTT+AGG | + | chr4_4:73443573-73443592 | None:intergenic | 15.0% |
| !!! | CTATAATTTGTAGTATTTTA+TGG | + | chr4_4:73445965-73445984 | None:intergenic | 15.0% |
| !!! | AATATTTTACAAAGATGATA+AGG | - | chr4_4:73446146-73446165 | Msa0702000:intron | 15.0% |
| !!! | ATTTTTAAAATACTCTGTTA+TGG | - | chr4_4:73446437-73446456 | Msa0702000:intron | 15.0% |
| !! | AGTTATAACAAAATATGTTA+AGG | - | chr4_4:73446535-73446554 | Msa0702000:intron | 15.0% |
| !!! | TATAATTTTAATTATTTCGG+GGG | + | chr4_4:73447608-73447627 | None:intergenic | 15.0% |
| !!! | AGATTTTTGAAAAATCAATT+TGG | + | chr4_4:73448794-73448813 | None:intergenic | 15.0% |
| !!! | TTTTTCAATGTTTTACTTTT+GGG | - | chr4_4:73449702-73449721 | Msa0702000:intron | 15.0% |
| !! | ATAACAACATAACATTTGAT+TGG | - | chr4_4:73443685-73443704 | Msa0702000:three_prime_UTR | 20.0% |
| !! | AAAAAGTAAAGTTGTGAAAT+GGG | + | chr4_4:73443824-73443843 | None:intergenic | 20.0% |
| !! | AAAAAAGTAAAGTTGTGAAA+TGG | + | chr4_4:73443825-73443844 | None:intergenic | 20.0% |
| !! | GAAAATCTGTTAAAATAGAA+TGG | - | chr4_4:73444746-73444765 | Msa0702000:intron | 20.0% |
| !! | AGATGTATTTGAAAGAAATA+AGG | + | chr4_4:73445103-73445122 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTAACTTATTGAA+AGG | + | chr4_4:73446206-73446225 | None:intergenic | 20.0% |
| !!! | TTTGATACTTGAAATTTTTC+AGG | - | chr4_4:73446709-73446728 | Msa0702000:intron | 20.0% |
| !!! | TTGATACTTGAAATTTTTCA+GGG | - | chr4_4:73446710-73446729 | Msa0702000:intron | 20.0% |
| !! | ATTCTATAAGCATCTATAAA+AGG | - | chr4_4:73447319-73447338 | Msa0702000:intron | 20.0% |
| !!! | CTAATACTTTATTTAGATCA+TGG | - | chr4_4:73447633-73447652 | Msa0702000:intron | 20.0% |
| !! | TAACAATAACAATAAATCTC+AGG | + | chr4_4:73448118-73448137 | None:intergenic | 20.0% |
| !!! | GAAGTCAAAACAATAATTTT+CGG | + | chr4_4:73448746-73448765 | None:intergenic | 20.0% |
| !!! | TTTGATTTCGCTAATATTTT+GGG | - | chr4_4:73448766-73448785 | Msa0702000:intron | 20.0% |
| !!! | GATTTTTCAAAAATCTTTCA+AGG | - | chr4_4:73448798-73448817 | Msa0702000:intron | 20.0% |
| !!! | GTTTTTCAATGTTTTACTTT+TGG | - | chr4_4:73449701-73449720 | Msa0702000:intron | 20.0% |
| !! | TTCAAATCAATCAATTACAA+AGG | + | chr4_4:73449762-73449781 | None:intergenic | 20.0% |
| ! | TTCTCAAATGCATTTCAAAA+TGG | - | chr4_4:73443929-73443948 | Msa0702000:three_prime_UTR | 25.0% |
| ! | TCTCAAATGCATTTCAAAAT+GGG | - | chr4_4:73443930-73443949 | Msa0702000:three_prime_UTR | 25.0% |
| ! | GTATAATTGTATTGTCTTGA+TGG | - | chr4_4:73444059-73444078 | Msa0702000:three_prime_UTR | 25.0% |
| ! | AAGTTTAAATACTTGTTTGC+AGG | - | chr4_4:73444125-73444144 | Msa0702000:exon | 25.0% |
| ! | GAAAGTCTATTCAGTATTAA+TGG | - | chr4_4:73444375-73444394 | Msa0702000:intron | 25.0% |
| ! | GACTCAAACTTAATACAATA+TGG | + | chr4_4:73444503-73444522 | None:intergenic | 25.0% |
| ! | ATTAATATATCAGAAAAGCG+TGG | - | chr4_4:73444773-73444792 | Msa0702000:intron | 25.0% |
| ! | TCTACAGAAGAAAGAAAAAA+GGG | + | chr4_4:73444991-73445010 | None:intergenic | 25.0% |
| ! | AACCAATAAGGAAATCTAAT+GGG | + | chr4_4:73445042-73445061 | None:intergenic | 25.0% |
| ! | ATCCAGGATATCAAATATAT+GGG | + | chr4_4:73445076-73445095 | None:intergenic | 25.0% |
| ! | AATCCAGGATATCAAATATA+TGG | + | chr4_4:73445077-73445096 | None:intergenic | 25.0% |
| ! | TATATTTGATATCCTGGATT+TGG | - | chr4_4:73445077-73445096 | Msa0702000:intron | 25.0% |
| ! | AAGAGACCATATAAATTGAT+GGG | - | chr4_4:73445184-73445203 | Msa0702000:intron | 25.0% |
| ! | TAAACAGAATAGACACAAAA+AGG | + | chr4_4:73445299-73445318 | None:intergenic | 25.0% |
| !! | CTGCTTTAACAATTTCTTTT+TGG | + | chr4_4:73445358-73445377 | None:intergenic | 25.0% |
| ! | TCTTATAAGCATATTGAAAC+AGG | - | chr4_4:73445398-73445417 | Msa0702000:intron | 25.0% |
| ! | AGTGAATAAACAAAATTGTG+TGG | + | chr4_4:73445477-73445496 | None:intergenic | 25.0% |
| ! | AACATATGAAAAGTTTACCT+GGG | + | chr4_4:73445680-73445699 | None:intergenic | 25.0% |
| !!! | TCTAGTTGTATAAGTTTTAG+TGG | - | chr4_4:73445701-73445720 | Msa0702000:CDS | 25.0% |
| ! | TAAAATATTACTTAGTCAGC+TGG | + | chr4_4:73446135-73446154 | None:intergenic | 25.0% |
| !! | TTCGATAAGAGTGTAAAAAA+GGG | + | chr4_4:73446594-73446613 | None:intergenic | 25.0% |
| !!! | TTTGACTTTTGATACTATAG+AGG | - | chr4_4:73446679-73446698 | Msa0702000:intron | 25.0% |
| ! | TGAGAGAAATATGAATCAAA+TGG | - | chr4_4:73446766-73446785 | Msa0702000:CDS | 25.0% |
| ! | AAACTACATCAGATTATTAC+TGG | + | chr4_4:73446930-73446949 | None:intergenic | 25.0% |
| ! | TGTAATAAACAGTGAAAGTT+TGG | - | chr4_4:73446974-73446993 | Msa0702000:intron | 25.0% |
| ! | CAAATATGCTTTGTAAATAG+AGG | - | chr4_4:73447047-73447066 | Msa0702000:intron | 25.0% |
| ! | ACTATTTGTTCTGATATTCT+TGG | - | chr4_4:73447144-73447163 | Msa0702000:intron | 25.0% |
| ! | AAGCATTTAACGAGAAAAAA+AGG | - | chr4_4:73447192-73447211 | Msa0702000:intron | 25.0% |
| ! | CTTATAGAATAGTTAGATGA+GGG | + | chr4_4:73447309-73447328 | None:intergenic | 25.0% |
| !!! | AAAAGGATTTTTTCATGAGT+AGG | - | chr4_4:73447336-73447355 | Msa0702000:intron | 25.0% |
| !!! | TAGATTTCATTCTAGCTTAT+TGG | + | chr4_4:73447392-73447411 | None:intergenic | 25.0% |
| ! | AAGCTAGAATGAAATCTAAA+TGG | - | chr4_4:73447394-73447413 | Msa0702000:intron | 25.0% |
| ! | AGCTAGAATGAAATCTAAAT+GGG | - | chr4_4:73447395-73447414 | Msa0702000:intron | 25.0% |
| ! | ATTACACTATTACTTGATCT+AGG | + | chr4_4:73447421-73447440 | None:intergenic | 25.0% |
| !! | TCTTAACCTTATTTACTCAT+TGG | - | chr4_4:73447702-73447721 | Msa0702000:intron | 25.0% |
| !! | GATCATGCTTATGATTTTAT+AGG | - | chr4_4:73448015-73448034 | Msa0702000:CDS | 25.0% |
| ! | AGTTTCAATTTCACCAAAAA+TGG | + | chr4_4:73448077-73448096 | None:intergenic | 25.0% |
| ! | AATAACAATAAATCTCAGGA+TGG | + | chr4_4:73448114-73448133 | None:intergenic | 25.0% |
| ! | TTTCTATGATTGTTAACACT+TGG | - | chr4_4:73448245-73448264 | Msa0702000:CDS | 25.0% |
| ! | ATCTTAGGTTTAGATAAATG+CGG | + | chr4_4:73448379-73448398 | None:intergenic | 25.0% |
| ! | TTTATCTAAACCTAAGATGA+TGG | - | chr4_4:73448381-73448400 | Msa0702000:intron | 25.0% |
| !! | TTGCTATTGTTATTGTTATG+TGG | - | chr4_4:73448404-73448423 | Msa0702000:intron | 25.0% |
| ! | CTAAGCAAGTAAAAATACAA+TGG | + | chr4_4:73448551-73448570 | None:intergenic | 25.0% |
| !!! | TTTACTTGCTTAGTTTTGTT+AGG | - | chr4_4:73448558-73448577 | Msa0702000:intron | 25.0% |
| ! | AAAACTCATATATCAGTTTG+AGG | - | chr4_4:73448608-73448627 | Msa0702000:intron | 25.0% |
| ! | AAACTCATATATCAGTTTGA+GGG | - | chr4_4:73448609-73448628 | Msa0702000:intron | 25.0% |
| !!! | CTTTGATTTCGCTAATATTT+TGG | - | chr4_4:73448765-73448784 | Msa0702000:intron | 25.0% |
| !! | TTTTCCTTTCAAGATATCAT+GGG | - | chr4_4:73448823-73448842 | Msa0702000:intron | 25.0% |
| !! | GAAGTGACTTTTCAAAATTT+GGG | - | chr4_4:73448990-73449009 | Msa0702000:intron | 25.0% |
| !!! | ATTGTTTTTTTGGAATCACT+CGG | - | chr4_4:73449048-73449067 | Msa0702000:intron | 25.0% |
| ! | CATGAAGAAATAAATTACAC+AGG | + | chr4_4:73449107-73449126 | None:intergenic | 25.0% |
| !!! | TCCTGTTATCTATTTTTTCT+AGG | - | chr4_4:73449255-73449274 | Msa0702000:intron | 25.0% |
| ! | TTCATTATAACAGGATGAAT+CGG | + | chr4_4:73449284-73449303 | None:intergenic | 25.0% |
| ! | TTCATCCTGTTATAATGAAT+TGG | - | chr4_4:73449285-73449304 | Msa0702000:intron | 25.0% |
| ! | CAAATCCAATTCATTATAAC+AGG | + | chr4_4:73449293-73449312 | None:intergenic | 25.0% |
| !!! | CTGTGTAACATTTAGAATTT+TGG | + | chr4_4:73449347-73449366 | None:intergenic | 25.0% |
| ! | CAAAATTCTAAATGTTACAC+AGG | - | chr4_4:73449345-73449364 | Msa0702000:intron | 25.0% |
| ! | ATTCAAAGAAGATGAACAAA+AGG | - | chr4_4:73449549-73449568 | Msa0702000:intron | 25.0% |
| ! | CTAGAGTAGAAATGTATAAT+TGG | + | chr4_4:73449971-73449990 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAGAACCCAGATT+CGG | + | chr4_4:73443868-73443887 | None:intergenic | 30.0% |
| GCTGTAATAAAACAATTCAG+CGG | - | chr4_4:73444147-73444166 | Msa0702000:CDS | 30.0% | |
| !!! | GAGGGTAGATATTTTTTTCT+TGG | - | chr4_4:73444266-73444285 | Msa0702000:intron | 30.0% |
| TTGTAGGTTGTATGTGTATT+AGG | - | chr4_4:73444353-73444372 | Msa0702000:intron | 30.0% | |
| TGTATTAAGTTTGAGTCTAG+TGG | - | chr4_4:73444506-73444525 | Msa0702000:intron | 30.0% | |
| TTACATTTAAGTCACTTCTG+AGG | + | chr4_4:73444540-73444559 | None:intergenic | 30.0% | |
| ATTGATTGACAAATCAAAGC+TGG | + | chr4_4:73444628-73444647 | None:intergenic | 30.0% | |
| !! | AGCTTTGATTTGTCAATCAA+TGG | - | chr4_4:73444627-73444646 | Msa0702000:intron | 30.0% |
| TGTGAATATGAAGAAGATCA+GGG | + | chr4_4:73444851-73444870 | None:intergenic | 30.0% | |
| ATGTGAATATGAAGAAGATC+AGG | + | chr4_4:73444852-73444871 | None:intergenic | 30.0% | |
| AGAAAGAAAAAAGGGAATAG+AGG | + | chr4_4:73444983-73445002 | None:intergenic | 30.0% | |
| GTCTACAGAAGAAAGAAAAA+AGG | + | chr4_4:73444992-73445011 | None:intergenic | 30.0% | |
| TTTCTTCTGTAGACTTTGAT+TGG | - | chr4_4:73444998-73445017 | Msa0702000:intron | 30.0% | |
| GAACCAATAAGGAAATCTAA+TGG | + | chr4_4:73445043-73445062 | None:intergenic | 30.0% | |
| TCCAGGATATCAAATATATG+GGG | + | chr4_4:73445075-73445094 | None:intergenic | 30.0% | |
| AATGAGCTTAATCTTAAGTG+AGG | - | chr4_4:73445149-73445168 | Msa0702000:intron | 30.0% | |
| GAAGAGACCATATAAATTGA+TGG | - | chr4_4:73445183-73445202 | Msa0702000:intron | 30.0% | |
| AGAGACCATATAAATTGATG+GGG | - | chr4_4:73445185-73445204 | Msa0702000:intron | 30.0% | |
| ! | CTACAAAAGTATGATTCAGA+AGG | + | chr4_4:73445225-73445244 | None:intergenic | 30.0% |
| ! | TTTCTTTTTCCTGTGATTTG+TGG | - | chr4_4:73445437-73445456 | Msa0702000:intron | 30.0% |
| ATCCTCATAAACAATAGTCA+TGG | - | chr4_4:73445506-73445525 | Msa0702000:intron | 30.0% | |
| TACCATGACTATTGTTTATG+AGG | + | chr4_4:73445511-73445530 | None:intergenic | 30.0% | |
| CAACATATGAAAAGTTTACC+TGG | + | chr4_4:73445681-73445700 | None:intergenic | 30.0% | |
| TTCATTTATGTGAGTATGCA+TGG | - | chr4_4:73445767-73445786 | Msa0702000:CDS | 30.0% | |
| ACATGACAATCTTGAAAACA+AGG | + | chr4_4:73445929-73445948 | None:intergenic | 30.0% | |
| ATGCTTAAAATATGAAGCTC+TGG | - | chr4_4:73446174-73446193 | Msa0702000:intron | 30.0% | |
| ! | GTTCGATAAGAGTGTAAAAA+AGG | + | chr4_4:73446595-73446614 | None:intergenic | 30.0% |
| ATATTTGAATCTGTGCAGAA+GGG | + | chr4_4:73446637-73446656 | None:intergenic | 30.0% | |
| TATATTTGAATCTGTGCAGA+AGG | + | chr4_4:73446638-73446657 | None:intergenic | 30.0% | |
| !!! | ATACTTGAAATTTTTCAGGG+AGG | - | chr4_4:73446713-73446732 | Msa0702000:intron | 30.0% |
| ATATTCTTGGTCAAGTACAT+GGG | - | chr4_4:73447157-73447176 | Msa0702000:intron | 30.0% | |
| !!! | CAGTTGATTTTAACTTATGC+AGG | + | chr4_4:73447261-73447280 | None:intergenic | 30.0% |
| GCTTATAGAATAGTTAGATG+AGG | + | chr4_4:73447310-73447329 | None:intergenic | 30.0% | |
| AAGTAATAGTGTAATGCAAC+TGG | - | chr4_4:73447426-73447445 | Msa0702000:intron | 30.0% | |
| !! | ACTTTTGATAGCCAATATGA+AGG | - | chr4_4:73447548-73447567 | Msa0702000:intron | 30.0% |
| CATCTTGAATCTTTATTGCA+TGG | - | chr4_4:73447571-73447590 | Msa0702000:intron | 30.0% | |
| CGAAAACCAATGAGTAAATA+AGG | + | chr4_4:73447711-73447730 | None:intergenic | 30.0% | |
| TTCGAAATTCAATCAGAAAG+AGG | - | chr4_4:73447727-73447746 | Msa0702000:intron | 30.0% | |
| ATCCAAAACACTTACAAGTT+TGG | + | chr4_4:73447983-73448002 | None:intergenic | 30.0% | |
| ! | CATGCTTATGATTTTATAGG+TGG | - | chr4_4:73448018-73448037 | Msa0702000:CDS | 30.0% |
| ! | TTTTGGTGAAATTGAAACTG+AGG | - | chr4_4:73448078-73448097 | Msa0702000:intron | 30.0% |
| AGAGAAAACAATGTACTTCT+TGG | - | chr4_4:73448343-73448362 | Msa0702000:intron | 30.0% | |
| ! | ACTTATGGTTAGGTTTTACT+TGG | - | chr4_4:73448637-73448656 | Msa0702000:intron | 30.0% |
| ! | CTTATGGTTAGGTTTTACTT+GGG | - | chr4_4:73448638-73448657 | Msa0702000:intron | 30.0% |
| ! | TTATGGTTAGGTTTTACTTG+GGG | - | chr4_4:73448639-73448658 | Msa0702000:intron | 30.0% |
| ! | CTTTTCCTTTCAAGATATCA+TGG | - | chr4_4:73448822-73448841 | Msa0702000:intron | 30.0% |
| ACAACAAGAAAGAATTCACA+TGG | + | chr4_4:73448851-73448870 | None:intergenic | 30.0% | |
| !! | AGTTCTTTGAAATCTATGAG+AGG | - | chr4_4:73448940-73448959 | Msa0702000:intron | 30.0% |
| !! | AATTTTGAAAAGTCACTTCC+TGG | + | chr4_4:73448989-73449008 | None:intergenic | 30.0% |
| ! | GGAAGTGACTTTTCAAAATT+TGG | - | chr4_4:73448989-73449008 | Msa0702000:intron | 30.0% |
| TCATACTGAAATGCAAAAGA+CGG | + | chr4_4:73449019-73449038 | None:intergenic | 30.0% | |
| TACACAGGTTATTGTTCATA+AGG | + | chr4_4:73449092-73449111 | None:intergenic | 30.0% | |
| TTTCTTCATGAACTGATCTT+TGG | - | chr4_4:73449117-73449136 | Msa0702000:intron | 30.0% | |
| !! | AAAGGAACTTAGCTTTTCAA+AGG | - | chr4_4:73449190-73449209 | Msa0702000:intron | 30.0% |
| !! | AAGGAACTTAGCTTTTCAAA+GGG | - | chr4_4:73449191-73449210 | Msa0702000:intron | 30.0% |
| GCCTAGAAAAAATAGATAAC+AGG | + | chr4_4:73449259-73449278 | None:intergenic | 30.0% | |
| TGCAATGCAAAACCAAAAAA+GGG | + | chr4_4:73449527-73449546 | None:intergenic | 30.0% | |
| ATGCAATGCAAAACCAAAAA+AGG | + | chr4_4:73449528-73449547 | None:intergenic | 30.0% | |
| !!! | TGTGTCTTTTTTTGTGCTTA+TGG | - | chr4_4:73449787-73449806 | Msa0702000:intron | 30.0% |
| TTGGTTGAATGAAGAATGAT+AGG | - | chr4_4:73449819-73449838 | Msa0702000:intron | 30.0% | |
| !!! | ATAGGATTTTGAAGTAACTG+AGG | - | chr4_4:73449837-73449856 | Msa0702000:CDS | 30.0% |
| !!! | TAGGATTTTGAAGTAACTGA+GGG | - | chr4_4:73449838-73449857 | Msa0702000:CDS | 30.0% |
| !! | AAAAGAATTTTGATCCGACA+TGG | + | chr4_4:73449900-73449919 | None:intergenic | 30.0% |
| TTTGATAAAGATCACAGACA+CGG | + | chr4_4:73450010-73450029 | None:intergenic | 30.0% | |
| ACAAATCATGTACATTTGAC+AGG | + | chr4_4:73450050-73450069 | None:intergenic | 30.0% | |
| AGTAAAGTTGTGAAATGGGT+CGG | + | chr4_4:73443820-73443839 | None:intergenic | 35.0% | |
| TCTAACTTCAAATCCGAATC+TGG | - | chr4_4:73443852-73443871 | Msa0702000:three_prime_UTR | 35.0% | |
| CTAACTTCAAATCCGAATCT+GGG | - | chr4_4:73443853-73443872 | Msa0702000:three_prime_UTR | 35.0% | |
| TACAGCATTCATTCACATCA+AGG | + | chr4_4:73444042-73444061 | None:intergenic | 35.0% | |
| AATGCAGAGACATCAACATA+TGG | - | chr4_4:73444215-73444234 | Msa0702000:CDS | 35.0% | |
| GAAAAAAATATCTACCCTCC+CGG | + | chr4_4:73444265-73444284 | None:intergenic | 35.0% | |
| CCTACAATTATGAGCTTACA+AGG | + | chr4_4:73444340-73444359 | None:intergenic | 35.0% | |
| CCTTGTAAGCTCATAATTGT+AGG | - | chr4_4:73444337-73444356 | Msa0702000:intron | 35.0% | |
| GATTGTGAGTGACATTATTG+TGG | - | chr4_4:73444397-73444416 | Msa0702000:CDS | 35.0% | |
| ATTATTGTGGCTGTCAGATT+AGG | - | chr4_4:73444410-73444429 | Msa0702000:CDS | 35.0% | |
| CTTTGTAGTCAGATTCTCTA+CGG | + | chr4_4:73444722-73444741 | None:intergenic | 35.0% | |
| GTGAATATGAAGAAGATCAG+GGG | + | chr4_4:73444850-73444869 | None:intergenic | 35.0% | |
| GACAGCTATCATGAAGAAAT+TGG | + | chr4_4:73444905-73444924 | None:intergenic | 35.0% | |
| !! | CAAATATATGGGGGTATTGA+GGG | + | chr4_4:73445065-73445084 | None:intergenic | 35.0% |
| !! | TCAAATATATGGGGGTATTG+AGG | + | chr4_4:73445066-73445085 | None:intergenic | 35.0% |
| CCAGGATATCAAATATATGG+GGG | + | chr4_4:73445074-73445093 | None:intergenic | 35.0% | |
| AAAGAAATAAGGCCAAATCC+AGG | + | chr4_4:73445092-73445111 | None:intergenic | 35.0% | |
| GAGACCATATAAATTGATGG+GGG | - | chr4_4:73445186-73445205 | Msa0702000:intron | 35.0% | |
| AGACCATATAAATTGATGGG+GGG | - | chr4_4:73445187-73445206 | Msa0702000:intron | 35.0% | |
| AAACCCCCCATCAATTTATA+TGG | + | chr4_4:73445193-73445212 | None:intergenic | 35.0% | |
| AAACAATAGTCATGGTAGAC+AGG | - | chr4_4:73445514-73445533 | Msa0702000:intron | 35.0% | |
| CAGTGACAACATATTAGCTA+AGG | - | chr4_4:73445582-73445601 | Msa0702000:intron | 35.0% | |
| ACAGAGAGTGATATATAGCA+CGG | + | chr4_4:73445810-73445829 | None:intergenic | 35.0% | |
| ! | ACTTATGCTGAAGTTTCTAG+TGG | - | chr4_4:73446046-73446065 | Msa0702000:intron | 35.0% |
| ACATGAAATCTGGTCATTCT+GGG | + | chr4_4:73446092-73446111 | None:intergenic | 35.0% | |
| TGTGCCAATTGTCAAACAAT+TGG | - | chr4_4:73446109-73446128 | Msa0702000:intron | 35.0% | |
| ! | GACTTTTGATACTATAGAGG+AGG | - | chr4_4:73446682-73446701 | Msa0702000:intron | 35.0% |
| ATCAAATGGTTTCAGTTTCC+AGG | - | chr4_4:73446780-73446799 | Msa0702000:CDS | 35.0% | |
| CCATTGATCATTTGTCTCAA+AGG | + | chr4_4:73446814-73446833 | None:intergenic | 35.0% | |
| !! | CCTTTGAGACAAATGATCAA+TGG | - | chr4_4:73446811-73446830 | Msa0702000:intron | 35.0% |
| ACACATGTAAGTCAAAAGCT+TGG | - | chr4_4:73446898-73446917 | Msa0702000:intron | 35.0% | |
| TAAATAGAGGAAAAGAGACG+AGG | - | chr4_4:73447060-73447079 | Msa0702000:intron | 35.0% | |
| !! | AGGAAATACTCTGAAGTGAT+AGG | - | chr4_4:73447080-73447099 | Msa0702000:intron | 35.0% |
| GATATTCTTGGTCAAGTACA+TGG | - | chr4_4:73447156-73447175 | Msa0702000:intron | 35.0% | |
| TATTCTTGGTCAAGTACATG+GGG | - | chr4_4:73447158-73447177 | Msa0702000:intron | 35.0% | |
| GATTCAAGATGCCTTCATAT+TGG | + | chr4_4:73447562-73447581 | None:intergenic | 35.0% | |
| ! | AGATTTCTAGAAGACAAGCA+CGG | - | chr4_4:73447750-73447769 | Msa0702000:intron | 35.0% |
| TTTACCTAGAACTGCCATAT+TGG | + | chr4_4:73447849-73447868 | None:intergenic | 35.0% | |
| !! | AGTTCTAGGTAAAGAAGCTT+CGG | - | chr4_4:73447856-73447875 | Msa0702000:intron | 35.0% |
| !! | AGCAAAGACTGACTTTTCAA+AGG | - | chr4_4:73447906-73447925 | Msa0702000:intron | 35.0% |
| !!! | TTTTCAAAGGCTTGTTGCTA+TGG | - | chr4_4:73447919-73447938 | Msa0702000:intron | 35.0% |
| ! | TGCCAAACTTGTAAGTGTTT+TGG | - | chr4_4:73447978-73447997 | Msa0702000:CDS | 35.0% |
| ACAATAGCAACCATCATCTT+AGG | + | chr4_4:73448394-73448413 | None:intergenic | 35.0% | |
| ! | AGTTTGAGGGATTTGACTTA+TGG | - | chr4_4:73448622-73448641 | Msa0702000:intron | 35.0% |
| ! | TATGGTTAGGTTTTACTTGG+GGG | - | chr4_4:73448640-73448659 | Msa0702000:intron | 35.0% |
| ! | TTTTGGTAAGCATAGAGACT+CGG | + | chr4_4:73449330-73449349 | None:intergenic | 35.0% |
| AAAGAATGAACAGCACAAAG+TGG | + | chr4_4:73449495-73449514 | None:intergenic | 35.0% | |
| !!! | TTTGCTTTGTCTCCCTTTTT+TGG | - | chr4_4:73449512-73449531 | Msa0702000:intron | 35.0% |
| GATGAACAAAAGGAATGTAG+AGG | - | chr4_4:73449559-73449578 | Msa0702000:intron | 35.0% | |
| AACAAAAGGAATGTAGAGGA+TGG | - | chr4_4:73449563-73449582 | Msa0702000:intron | 35.0% | |
| ATTCTGTGATAACAGACAAG+AGG | + | chr4_4:73449609-73449628 | None:intergenic | 35.0% | |
| ! | GTGCTTATGGTAATGTCTAT+TGG | - | chr4_4:73449800-73449819 | Msa0702000:intron | 35.0% |
| !! | TTGTTTCCTAAAAGCGTCCA+TGG | + | chr4_4:73443745-73443764 | None:intergenic | 40.0% |
| GCAAGTTGTCAAACAACAAC+AGG | - | chr4_4:73443782-73443801 | Msa0702000:three_prime_UTR | 40.0% | |
| ATAAAACAATTCAGCGGCAG+CGG | - | chr4_4:73444153-73444172 | Msa0702000:CDS | 40.0% | |
| TTATGAGAGCTCAGATGTTG+TGG | - | chr4_4:73444176-73444195 | Msa0702000:CDS | 40.0% | |
| AACATATGGAGAAGCTGTAC+AGG | - | chr4_4:73444229-73444248 | Msa0702000:CDS | 40.0% | |
| ACATATGGAGAAGCTGTACA+GGG | - | chr4_4:73444230-73444249 | Msa0702000:CDS | 40.0% | |
| AAGTGAGTTGCTCACATTAG+AGG | - | chr4_4:73444675-73444694 | Msa0702000:intron | 40.0% | |
| ACCCAAACTTTCCGAAAAGA+CGG | - | chr4_4:73444817-73444836 | Msa0702000:intron | 40.0% | |
| ! | ACCGTCTTTTCGGAAAGTTT+GGG | + | chr4_4:73444821-73444840 | None:intergenic | 40.0% |
| AATATGAAGAAGATCAGGGG+TGG | + | chr4_4:73444847-73444866 | None:intergenic | 40.0% | |
| TGATAGCTGTCCATTCTGTT+AGG | - | chr4_4:73444914-73444933 | Msa0702000:intron | 40.0% | |
| AGTGAATGGACCTAACAGAA+TGG | + | chr4_4:73444927-73444946 | None:intergenic | 40.0% | |
| GAATAGGAATTCTGCTAGAG+AGG | + | chr4_4:73444951-73444970 | None:intergenic | 40.0% | |
| ! | ATAGAGGCGTAATTGGGAAT+AGG | + | chr4_4:73444967-73444986 | None:intergenic | 40.0% |
| ! | AAGGGAATAGAGGCGTAATT+GGG | + | chr4_4:73444973-73444992 | None:intergenic | 40.0% |
| ! | AAAGGGAATAGAGGCGTAAT+TGG | + | chr4_4:73444974-73444993 | None:intergenic | 40.0% |
| CTTCTGTAGACTTTGATTGG+AGG | - | chr4_4:73445001-73445020 | Msa0702000:intron | 40.0% | |
| GGCCCATTAGATTTCCTTAT+TGG | - | chr4_4:73445037-73445056 | Msa0702000:intron | 40.0% | |
| CCCCCATATATTTGATATCC+TGG | - | chr4_4:73445071-73445090 | Msa0702000:intron | 40.0% | |
| ACAAAACTGTCATCTGATGC+AGG | - | chr4_4:73445328-73445347 | Msa0702000:intron | 40.0% | |
| !! | CTTTTTCCTGTGATTTGTGG+TGG | - | chr4_4:73445440-73445459 | Msa0702000:intron | 40.0% |
| GACAGGAACAAAACTTTCTG+AGG | - | chr4_4:73445531-73445550 | Msa0702000:CDS | 40.0% | |
| TGCTCGCAAACATGTAGAAA+AGG | - | chr4_4:73445624-73445643 | Msa0702000:intron | 40.0% | |
| ! | AGGAGCACGAAGAATTGAAT+CGG | - | chr4_4:73445644-73445663 | Msa0702000:intron | 40.0% |
| GAGCAAGACATCTGAAAGAA+TGG | + | chr4_4:73445844-73445863 | None:intergenic | 40.0% | |
| CACATGAAATCTGGTCATTC+TGG | + | chr4_4:73446093-73446112 | None:intergenic | 40.0% | |
| GACAATTGGCACATGAAATC+TGG | + | chr4_4:73446102-73446121 | None:intergenic | 40.0% | |
| CTGGCCAATTGTTTGACAAT+TGG | + | chr4_4:73446116-73446135 | None:intergenic | 40.0% | |
| TGTTACCTTACCTTATCACG+TGG | - | chr4_4:73446273-73446292 | Msa0702000:intron | 40.0% | |
| ! | AAAAAAGGGAGCACAGTAAG+AGG | + | chr4_4:73446580-73446599 | None:intergenic | 40.0% |
| ! | TGGTTTCAGTTTCCAGGTTT+TGG | - | chr4_4:73446786-73446805 | Msa0702000:CDS | 40.0% |
| ATCTTGCTCAACGGTATAGT+CGG | - | chr4_4:73446857-73446876 | Msa0702000:intron | 40.0% | |
| ACAGGTGTAATACTGATAGG+CGG | + | chr4_4:73447477-73447496 | None:intergenic | 40.0% | |
| CACACAGGTGTAATACTGAT+AGG | + | chr4_4:73447480-73447499 | None:intergenic | 40.0% | |
| ! | GATTTCTAGAAGACAAGCAC+GGG | - | chr4_4:73447751-73447770 | Msa0702000:intron | 40.0% |
| AAAGCCAATATGGCAGTTCT+AGG | - | chr4_4:73447842-73447861 | Msa0702000:intron | 40.0% | |
| !! | TCAAGAGTTGCAGCCATTTT+TGG | - | chr4_4:73448061-73448080 | Msa0702000:CDS | 40.0% |
| CGATTCTTTCTTCTGTCTGT+CGG | + | chr4_4:73448291-73448310 | None:intergenic | 40.0% | |
| CGACAGACAGAAGAAAGAAT+CGG | - | chr4_4:73448289-73448308 | Msa0702000:intron | 40.0% | |
| ! | TGTTTTCTCTGAGCCATTCT+GGG | + | chr4_4:73448333-73448352 | None:intergenic | 40.0% |
| ! | TTGTTTTCTCTGAGCCATTC+TGG | + | chr4_4:73448334-73448353 | None:intergenic | 40.0% |
| AACAATGTACTTCTTGGCTG+AGG | - | chr4_4:73448349-73448368 | Msa0702000:intron | 40.0% | |
| ! | GAGGGATTTGACTTATGGTT+AGG | - | chr4_4:73448627-73448646 | Msa0702000:intron | 40.0% |
| GGAACCCATGATATCTTGAA+AGG | + | chr4_4:73448830-73448849 | None:intergenic | 40.0% | |
| TCTATGAGAGGAAGCTTCAA+AGG | - | chr4_4:73448952-73448971 | Msa0702000:intron | 40.0% | |
| CTATGAGAGGAAGCTTCAAA+GGG | - | chr4_4:73448953-73448972 | Msa0702000:intron | 40.0% | |
| CTTCATGAACTGATCTTTGG+TGG | - | chr4_4:73449120-73449139 | Msa0702000:intron | 40.0% | |
| ! | TTTTCCGTTTCAGCATCGTA+AGG | + | chr4_4:73449173-73449192 | None:intergenic | 40.0% |
| TTACGATGCTGAAACGGAAA+AGG | - | chr4_4:73449172-73449191 | Msa0702000:intron | 40.0% | |
| GAAGGAGAATGCAATGGTAA+AGG | - | chr4_4:73449388-73449407 | Msa0702000:CDS | 40.0% | |
| GAGAATGCAATGGTAAAGGA+GGG | - | chr4_4:73449392-73449411 | Msa0702000:CDS | 40.0% | |
| AAAAGGAATGTAGAGGATGG+TGG | - | chr4_4:73449566-73449585 | Msa0702000:intron | 40.0% | |
| AAGAAAAATGTGTCCAGCTG+TGG | - | chr4_4:73449635-73449654 | Msa0702000:intron | 40.0% | |
| AGAAAAATGTGTCCAGCTGT+GGG | - | chr4_4:73449636-73449655 | Msa0702000:intron | 40.0% | |
| TAATCTGCAAGAGTGGAGTA+GGG | - | chr4_4:73449864-73449883 | Msa0702000:CDS | 40.0% | |
| ATTGGAATTTGAGCTAGTGC+AGG | + | chr4_4:73449953-73449972 | None:intergenic | 40.0% | |
| !! | TTTCCTAAAAGCGTCCATGG+CGG | + | chr4_4:73443742-73443761 | None:intergenic | 45.0% |
| ! | ACGGATTACTAGAGCGAATC+TGG | + | chr4_4:73444703-73444722 | None:intergenic | 45.0% |
| ! | CTTTTCGGAAAGTTTGGGTG+TGG | + | chr4_4:73444816-73444835 | None:intergenic | 45.0% |
| ! | GACCGTCTTTTCGGAAAGTT+TGG | + | chr4_4:73444822-73444841 | None:intergenic | 45.0% |
| TCTGCTAGAGAGGAAGTGAA+TGG | + | chr4_4:73444941-73444960 | None:intergenic | 45.0% | |
| GATTGGAGGCCAAATTGTTG+CGG | - | chr4_4:73445015-73445034 | Msa0702000:intron | 45.0% | |
| ATTGGAGGCCAAATTGTTGC+GGG | - | chr4_4:73445016-73445035 | Msa0702000:intron | 45.0% | |
| !! | GGGTATTGAGGGAACCAATA+AGG | + | chr4_4:73445054-73445073 | None:intergenic | 45.0% |
| CTTAAGTGAGGTAGTGAGAG+AGG | - | chr4_4:73445161-73445180 | Msa0702000:intron | 45.0% | |
| CTAAGTCCACCACAAATCAC+AGG | + | chr4_4:73445449-73445468 | None:intergenic | 45.0% | |
| !! | TCTGAGGAGTGCTGTAGATA+TGG | - | chr4_4:73445547-73445566 | Msa0702000:CDS | 45.0% |
| AGCATCGCCATATACTGATG+CGG | + | chr4_4:73445608-73445627 | None:intergenic | 45.0% | |
| !! | GAATCGGCTTTTATCTTCCC+AGG | - | chr4_4:73445660-73445679 | Msa0702000:intron | 45.0% |
| CTAAATGCAGCCACGTGATA+AGG | + | chr4_4:73446286-73446305 | None:intergenic | 45.0% | |
| CTTATCACGTGGCTGCATTT+AGG | - | chr4_4:73446284-73446303 | Msa0702000:intron | 45.0% | |
| CTGTCTGCATGACATGCATT+GGG | - | chr4_4:73446333-73446352 | Msa0702000:intron | 45.0% | |
| TGTCTGCATGACATGCATTG+GGG | - | chr4_4:73446334-73446353 | Msa0702000:intron | 45.0% | |
| GTCTCAAAGGATCCAAAACC+TGG | + | chr4_4:73446801-73446820 | None:intergenic | 45.0% | |
| AATGATCAATGGCCCACCTT+TGG | - | chr4_4:73446822-73446841 | Msa0702000:intron | 45.0% | |
| GACTATACCGTTGAGCAAGA+TGG | + | chr4_4:73446858-73446877 | None:intergenic | 45.0% | |
| AGGTGTAATACTGATAGGCG+GGG | + | chr4_4:73447475-73447494 | None:intergenic | 45.0% | |
| CAGGTGTAATACTGATAGGC+GGG | + | chr4_4:73447476-73447495 | None:intergenic | 45.0% | |
| GACAGCTATGTAATGCACAC+AGG | + | chr4_4:73447495-73447514 | None:intergenic | 45.0% | |
| ! | CTCCTTTTTCCCTCGACTTT+GGG | + | chr4_4:73447517-73447536 | None:intergenic | 45.0% |
| ! | TAGAAGACAAGCACGGGTTA+GGG | - | chr4_4:73447757-73447776 | Msa0702000:intron | 45.0% |
| TAAAGAAGCTTCGGCTGCAT+TGG | - | chr4_4:73447865-73447884 | Msa0702000:intron | 45.0% | |
| ! | ATGAACTGATCTTTGGTGGC+TGG | - | chr4_4:73449124-73449143 | Msa0702000:intron | 45.0% |
| GCATCCTTACGATGCTGAAA+CGG | - | chr4_4:73449166-73449185 | Msa0702000:intron | 45.0% | |
| AGGGTGACTTTATTGTCGTG+CGG | - | chr4_4:73449210-73449229 | Msa0702000:intron | 45.0% | |
| TGACTTTATTGTCGTGCGGA+AGG | - | chr4_4:73449214-73449233 | Msa0702000:intron | 45.0% | |
| TTACACAGGTGAGCCAAACA+GGG | - | chr4_4:73449359-73449378 | Msa0702000:CDS | 45.0% | |
| TGGTCAGAAGGAGAATGCAA+TGG | - | chr4_4:73449382-73449401 | Msa0702000:CDS | 45.0% | |
| GGAGAATGCAATGGTAAAGG+AGG | - | chr4_4:73449391-73449410 | Msa0702000:CDS | 45.0% | |
| AATGCAATGGTAAAGGAGGG+TGG | - | chr4_4:73449395-73449414 | Msa0702000:CDS | 45.0% | |
| ! | CTTCTGGCTACGTGGAAAAA+CGG | - | chr4_4:73449422-73449441 | Msa0702000:CDS | 45.0% |
| GAGAATCCCATCTAGCAACA+TGG | - | chr4_4:73449447-73449466 | Msa0702000:CDS | 45.0% | |
| CATGGCTGGAGAAGTTTACT+AGG | - | chr4_4:73449465-73449484 | Msa0702000:intron | 45.0% | |
| !! | GTAGAGGATGGTGGAATTGA+TGG | - | chr4_4:73449575-73449594 | Msa0702000:intron | 45.0% |
| GAAAAATGTGTCCAGCTGTG+GGG | - | chr4_4:73449637-73449656 | Msa0702000:intron | 45.0% | |
| TATGTAAGTTACCCCACAGC+TGG | + | chr4_4:73449651-73449670 | None:intergenic | 45.0% | |
| GCTGTGGGGTAACTTACATA+CGG | - | chr4_4:73449651-73449670 | Msa0702000:intron | 45.0% | |
| GTAATCTGCAAGAGTGGAGT+AGG | - | chr4_4:73449863-73449882 | Msa0702000:CDS | 45.0% | |
| GACAGGTATCACATTGCAGA+GGG | + | chr4_4:73450033-73450052 | None:intergenic | 45.0% | |
| TGACAGGTATCACATTGCAG+AGG | + | chr4_4:73450034-73450053 | None:intergenic | 45.0% | |
| !!! | ATTATAATTTTAATTATTTC+GGG | + | chr4_4:73447610-73447629 | None:intergenic | 5.0% |
| ! | CTAATGGGCCCGCAACAATT+TGG | + | chr4_4:73445027-73445046 | None:intergenic | 50.0% |
| GCTAAGGCCGCATCAGTATA+TGG | - | chr4_4:73445598-73445617 | Msa0702000:intron | 50.0% | |
| TGCAGCCACGTGATAAGGTA+AGG | + | chr4_4:73446281-73446300 | None:intergenic | 50.0% | |
| GCATGTCATGCAGACAGCAA+GGG | + | chr4_4:73446330-73446349 | None:intergenic | 50.0% | |
| TGCATGTCATGCAGACAGCA+AGG | + | chr4_4:73446331-73446350 | None:intergenic | 50.0% | |
| GCTGTCTGCATGACATGCAT+TGG | - | chr4_4:73446332-73446351 | Msa0702000:intron | 50.0% | |
| GTCTGCATGACATGCATTGG+GGG | - | chr4_4:73446335-73446354 | Msa0702000:intron | 50.0% | |
| TCTGCATGACATGCATTGGG+GGG | - | chr4_4:73446336-73446355 | Msa0702000:intron | 50.0% | |
| !! | GTGCAGAAGGGTGTCGAAAA+TGG | + | chr4_4:73446625-73446644 | None:intergenic | 50.0% |
| ATGCTCGCCATCTTGCTCAA+CGG | - | chr4_4:73446848-73446867 | Msa0702000:intron | 50.0% | |
| ACATAGCTGTCCCAAAGTCG+AGG | - | chr4_4:73447504-73447523 | Msa0702000:intron | 50.0% | |
| CATAGCTGTCCCAAAGTCGA+GGG | - | chr4_4:73447505-73447524 | Msa0702000:intron | 50.0% | |
| GTCCCAAAGTCGAGGGAAAA+AGG | - | chr4_4:73447512-73447531 | Msa0702000:intron | 50.0% | |
| ! | CCTCCTTTTTCCCTCGACTT+TGG | + | chr4_4:73447518-73447537 | None:intergenic | 50.0% |
| CCAAAGTCGAGGGAAAAAGG+AGG | - | chr4_4:73447515-73447534 | Msa0702000:intron | 50.0% | |
| CTAGAAGACAAGCACGGGTT+AGG | - | chr4_4:73447756-73447775 | Msa0702000:intron | 50.0% | |
| GGAATCTCAAACTGCTGAGC+AGG | - | chr4_4:73447778-73447797 | Msa0702000:intron | 50.0% | |
| GCAGGAGCTGAAAGCCAATA+TGG | - | chr4_4:73447832-73447851 | Msa0702000:intron | 50.0% | |
| ! | TCTGGGACATAACGACTGGA+GGG | + | chr4_4:73448316-73448335 | None:intergenic | 50.0% |
| !! | TTCTGGGACATAACGACTGG+AGG | + | chr4_4:73448317-73448336 | None:intergenic | 50.0% |
| !! | CCATTCTGGGACATAACGAC+TGG | + | chr4_4:73448320-73448339 | None:intergenic | 50.0% |
| CCAGTCGTTATGTCCCAGAA+TGG | - | chr4_4:73448317-73448336 | Msa0702000:intron | 50.0% | |
| TCAAAGGGCGAGTAGTATCC+AGG | - | chr4_4:73448968-73448987 | Msa0702000:intron | 50.0% | |
| GTTACACAGGTGAGCCAAAC+AGG | - | chr4_4:73449358-73449377 | Msa0702000:CDS | 50.0% | |
| AAAGGAGGGTGGTTTCCTTC+TGG | - | chr4_4:73449406-73449425 | Msa0702000:CDS | 50.0% | |
| ! | CGTTTTTCCACGTAGCCAGA+AGG | + | chr4_4:73449424-73449443 | None:intergenic | 50.0% |
| ATCCCATCTAGCAACATGGC+TGG | - | chr4_4:73449451-73449470 | Msa0702000:CDS | 50.0% | |
| CTCCAGCCATGTTGCTAGAT+GGG | + | chr4_4:73449456-73449475 | None:intergenic | 50.0% | |
| TCTCCAGCCATGTTGCTAGA+TGG | + | chr4_4:73449457-73449476 | None:intergenic | 50.0% | |
| GTGGGGTAACTTACATACGG+TGG | - | chr4_4:73449654-73449673 | Msa0702000:intron | 50.0% | |
| AGGGCTGTAATCTGCAAGAG+TGG | - | chr4_4:73449857-73449876 | Msa0702000:CDS | 50.0% | |
| TCACTGTCACTGTACCGCCA+TGG | - | chr4_4:73443725-73443744 | Msa0702000:three_prime_UTR | 55.0% | |
| ! | GTACCGCCATGGACGCTTTT+AGG | - | chr4_4:73443736-73443755 | Msa0702000:three_prime_UTR | 55.0% |
| ! | GGGGTGGTAGACCGTCTTTT+CGG | + | chr4_4:73444831-73444850 | None:intergenic | 55.0% |
| CTGCATGACATGCATTGGGG+GGG | - | chr4_4:73446337-73446356 | Msa0702000:intron | 55.0% | |
| TGCATGACATGCATTGGGGG+GGG | - | chr4_4:73446338-73446357 | Msa0702000:intron | 55.0% | |
| GATCAATGGCCCACCTTTGG+AGG | - | chr4_4:73446825-73446844 | Msa0702000:intron | 55.0% | |
| AGATGGCGAGCATCCTCCAA+AGG | + | chr4_4:73446841-73446860 | None:intergenic | 55.0% | |
| TGCCAAACTGCATGCTGCAG+AGG | - | chr4_4:73447802-73447821 | Msa0702000:intron | 55.0% | |
| TGCCTCTGCAGCATGCAGTT+TGG | + | chr4_4:73447807-73447826 | None:intergenic | 55.0% | |
| TGCTGCAGAGGCAAAGATGC+AGG | - | chr4_4:73447814-73447833 | Msa0702000:intron | 55.0% | |
| CTGGGACATAACGACTGGAG+GGG | + | chr4_4:73448315-73448334 | None:intergenic | 55.0% | |
| ! | CTCGGTTCTGACGATGTGTG+AGG | - | chr4_4:73449066-73449085 | Msa0702000:intron | 55.0% |
| AGCCAAACAGGGTGGTCAGA+AGG | - | chr4_4:73449370-73449389 | Msa0702000:CDS | 55.0% | |
| CTCCTTCTGACCACCCTGTT+TGG | + | chr4_4:73449375-73449394 | None:intergenic | 55.0% | |
| ! | GTGGTTTCCTTCTGGCTACG+TGG | - | chr4_4:73449414-73449433 | Msa0702000:CDS | 55.0% |
| AGAGTGGAGTAGGGTGAGTG+AGG | - | chr4_4:73449873-73449892 | Msa0702000:exon | 55.0% | |
| AGGGTGAGTGAGGACCATGT+CGG | - | chr4_4:73449883-73449902 | Msa0702000:exon | 55.0% | |
| GCATGACATGCATTGGGGGG+GGG | - | chr4_4:73446339-73446358 | Msa0702000:intron | 60.0% | |
| CATGACATGCATTGGGGGGG+GGG | - | chr4_4:73446340-73446359 | Msa0702000:intron | 60.0% | |
| GGCGAGCATCCTCCAAAGGT+GGG | + | chr4_4:73446837-73446856 | None:intergenic | 60.0% | |
| TGGCGAGCATCCTCCAAAGG+TGG | + | chr4_4:73446838-73446857 | None:intergenic | 60.0% | |
| GTGGCTGGTGCATCTCTTGC+AGG | - | chr4_4:73449139-73449158 | Msa0702000:intron | 60.0% | |
| CACAGGTGAGCCAAACAGGG+TGG | - | chr4_4:73449362-73449381 | Msa0702000:CDS | 60.0% | |
| CTGTACAGGGCCACTCGTGC+CGG | - | chr4_4:73444243-73444262 | Msa0702000:intron | 65.0% | |
| TGTACAGGGCCACTCGTGCC+GGG | - | chr4_4:73444244-73444263 | Msa0702000:intron | 65.0% | |
| ATCTACCCTCCCGGCACGAG+TGG | + | chr4_4:73444256-73444275 | None:intergenic | 65.0% | |
| ACAGGGCCACTCGTGCCGGG+AGG | - | chr4_4:73444247-73444266 | Msa0702000:intron | 75.0% | |
| CAGGGCCACTCGTGCCGGGA+GGG | - | chr4_4:73444248-73444267 | Msa0702000:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73443547 | 73450080 | 73443547 | ID=Msa0702000;Name=Msa0702000 |
| chr4_4 | mRNA | 73443547 | 73450080 | 73443547 | ID=Msa0702000-mRNA-1;Parent=Msa0702000;Name=Msa0702000-mRNA-1;_AED=0.21;_eAED=0.21;_QI=197|1|1|1|1|1|10|594|348 |
| chr4_4 | exon | 73443547 | 73444260 | 73443547 | ID=Msa0702000-mRNA-1:exon:22644;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73444392 | 73444466 | 73444392 | ID=Msa0702000-mRNA-1:exon:22643;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73445257 | 73445346 | 73445257 | ID=Msa0702000-mRNA-1:exon:22642;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73445528 | 73445590 | 73445528 | ID=Msa0702000-mRNA-1:exon:22641;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73445687 | 73445884 | 73445687 | ID=Msa0702000-mRNA-1:exon:22640;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73446724 | 73446825 | 73446724 | ID=Msa0702000-mRNA-1:exon:22639;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73447946 | 73448091 | 73447946 | ID=Msa0702000-mRNA-1:exon:22638;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73448208 | 73448277 | 73448208 | ID=Msa0702000-mRNA-1:exon:22637;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73449358 | 73449480 | 73449358 | ID=Msa0702000-mRNA-1:exon:22636;Parent=Msa0702000-mRNA-1 |
| chr4_4 | exon | 73449824 | 73450080 | 73449824 | ID=Msa0702000-mRNA-1:exon:22635;Parent=Msa0702000-mRNA-1 |
| chr4_4 | five_prime_UTR | 73449884 | 73450080 | 73449884 | ID=Msa0702000-mRNA-1:five_prime_utr;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73449824 | 73449883 | 73449824 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73449358 | 73449480 | 73449358 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73448208 | 73448277 | 73448208 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73447946 | 73448091 | 73447946 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73446724 | 73446825 | 73446724 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73445687 | 73445884 | 73445687 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73445528 | 73445590 | 73445528 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73445257 | 73445346 | 73445257 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73444392 | 73444466 | 73444392 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | CDS | 73444141 | 73444260 | 73444141 | ID=Msa0702000-mRNA-1:cds;Parent=Msa0702000-mRNA-1 |
| chr4_4 | three_prime_UTR | 73443547 | 73444140 | 73443547 | ID=Msa0702000-mRNA-1:three_prime_utr;Parent=Msa0702000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
