Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568130 | XP_039684465.1 | 97.386 | 153 | 4 | 0 | 1 | 153 | 19 | 171 | 5.88e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568130 | sp|O65657|HIP23_ARATH | 69.620 | 158 | 43 | 3 | 1 | 153 | 1 | 158 | 4.69e-69 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568130 | G7LAE8 | 97.386 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 2.94e-107 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0567670 | Msa0568130 | 0.800312 | 1.529168e-48 | -8.615850e-47 |
| Msa0567690 | Msa0568130 | 0.808731 | 2.681421e-50 | -8.615850e-47 |
| Msa0567710 | Msa0568130 | 0.811981 | 5.332745e-51 | -8.615850e-47 |
| Msa0567960 | Msa0568130 | 0.800876 | 1.173310e-48 | -8.615850e-47 |
| Msa0568130 | Msa0570500 | 0.808102 | 3.651747e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568130 | MtrunA17_Chr8g0382721 | 97.386 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 5.66e-111 | 311 |
| Msa0568130 | MtrunA17_Chr3g0124411 | 79.355 | 155 | 27 | 3 | 1 | 153 | 1 | 152 | 4.60e-80 | 233 |
| Msa0568130 | MtrunA17_Chr3g0115421 | 61.438 | 153 | 55 | 2 | 1 | 153 | 1 | 149 | 1.83e-55 | 171 |
| Msa0568130 | MtrunA17_Chr5g0405811 | 53.205 | 156 | 66 | 4 | 5 | 153 | 2 | 157 | 3.87e-54 | 168 |
| Msa0568130 | MtrunA17_Chr1g0160201 | 53.691 | 149 | 66 | 2 | 5 | 153 | 2 | 147 | 3.50e-53 | 165 |
| Msa0568130 | MtrunA17_Chr6g0448861 | 53.247 | 154 | 67 | 3 | 5 | 153 | 2 | 155 | 7.27e-53 | 164 |
| Msa0568130 | MtrunA17_Chr5g0407821 | 53.691 | 149 | 64 | 2 | 5 | 153 | 2 | 145 | 5.72e-51 | 159 |
| Msa0568130 | MtrunA17_Chr3g0145621 | 50.323 | 155 | 71 | 3 | 5 | 153 | 2 | 156 | 1.60e-50 | 159 |
| Msa0568130 | MtrunA17_Chr4g0036931 | 49.677 | 155 | 72 | 3 | 5 | 153 | 2 | 156 | 5.05e-50 | 157 |
| Msa0568130 | MtrunA17_Chr7g0251491 | 55.639 | 133 | 55 | 2 | 22 | 153 | 41 | 170 | 1.07e-47 | 152 |
| Msa0568130 | MtrunA17_Chr5g0422891 | 44.295 | 149 | 80 | 2 | 5 | 153 | 2 | 147 | 5.76e-41 | 134 |
| Msa0568130 | MtrunA17_Chr2g0325601 | 35.333 | 150 | 65 | 6 | 28 | 153 | 1 | 142 | 5.17e-22 | 85.9 |
| Msa0568130 | MtrunA17_Chr1g0189221 | 55.882 | 68 | 30 | 0 | 28 | 95 | 52 | 119 | 1.72e-21 | 85.5 |
| Msa0568130 | MtrunA17_Chr6g0471231 | 36.496 | 137 | 72 | 5 | 31 | 153 | 5 | 140 | 1.57e-16 | 71.6 |
| Msa0568130 | MtrunA17_Chr1g0191671 | 52.778 | 72 | 34 | 0 | 22 | 93 | 3 | 74 | 1.84e-16 | 75.1 |
| Msa0568130 | MtrunA17_Chr6g0460361 | 40.367 | 109 | 55 | 4 | 54 | 153 | 3 | 110 | 5.57e-16 | 69.3 |
| Msa0568130 | MtrunA17_Chr1g0208301 | 50.746 | 67 | 33 | 0 | 27 | 93 | 11 | 77 | 4.92e-15 | 70.9 |
| Msa0568130 | MtrunA17_Chr2g0287751 | 47.761 | 67 | 35 | 0 | 27 | 93 | 8 | 74 | 3.88e-14 | 68.6 |
| Msa0568130 | MtrunA17_Chr1g0198341 | 50.769 | 65 | 32 | 0 | 29 | 93 | 4 | 68 | 6.49e-14 | 63.2 |
| Msa0568130 | MtrunA17_Chr7g0269081 | 47.692 | 65 | 34 | 0 | 29 | 93 | 22 | 86 | 9.37e-14 | 67.0 |
| Msa0568130 | MtrunA17_Chr7g0218981 | 47.692 | 65 | 34 | 0 | 29 | 93 | 4 | 68 | 1.15e-13 | 63.9 |
| Msa0568130 | MtrunA17_Chr4g0065651 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 1.63e-13 | 66.6 |
| Msa0568130 | MtrunA17_Chr7g0272571 | 50.000 | 62 | 31 | 0 | 33 | 94 | 37 | 98 | 1.90e-13 | 66.2 |
| Msa0568130 | MtrunA17_Chr0c22g0493881 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 3.32e-13 | 65.9 |
| Msa0568130 | MtrunA17_Chr1g0192131 | 47.761 | 67 | 34 | 1 | 29 | 94 | 15 | 81 | 4.32e-13 | 65.5 |
| Msa0568130 | MtrunA17_Chr3g0111541 | 46.875 | 64 | 34 | 0 | 29 | 92 | 12 | 75 | 4.89e-13 | 63.9 |
| Msa0568130 | MtrunA17_Chr4g0065621 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 5.19e-13 | 65.1 |
| Msa0568130 | MtrunA17_Chr4g0050451 | 37.647 | 85 | 50 | 2 | 28 | 112 | 1 | 82 | 9.31e-13 | 60.5 |
| Msa0568130 | MtrunA17_Chr3g0094841 | 37.500 | 128 | 73 | 5 | 28 | 153 | 115 | 237 | 2.98e-12 | 62.0 |
| Msa0568130 | MtrunA17_Chr4g0067291 | 46.970 | 66 | 35 | 0 | 29 | 94 | 74 | 139 | 3.82e-11 | 59.7 |
| Msa0568130 | MtrunA17_Chr5g0429121 | 44.776 | 67 | 37 | 0 | 27 | 93 | 15 | 81 | 9.96e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568130 | AT4G39700.1 | 69.620 | 158 | 43 | 3 | 1 | 153 | 1 | 158 | 4.76e-70 | 208 |
| Msa0568130 | AT1G22990.1 | 55.195 | 154 | 61 | 4 | 5 | 153 | 2 | 152 | 4.47e-56 | 173 |
| Msa0568130 | AT4G08570.1 | 56.494 | 154 | 62 | 3 | 1 | 153 | 1 | 150 | 2.83e-54 | 168 |
| Msa0568130 | AT1G71050.1 | 54.305 | 151 | 67 | 1 | 5 | 153 | 2 | 152 | 1.49e-53 | 166 |
| Msa0568130 | AT1G22990.2 | 53.333 | 150 | 65 | 4 | 5 | 153 | 2 | 147 | 1.66e-52 | 164 |
| Msa0568130 | AT4G38580.1 | 51.634 | 153 | 69 | 3 | 5 | 153 | 2 | 153 | 1.68e-52 | 164 |
| Msa0568130 | AT4G38580.2 | 51.634 | 153 | 69 | 3 | 5 | 153 | 2 | 153 | 1.68e-52 | 164 |
| Msa0568130 | AT5G17450.1 | 50.000 | 150 | 72 | 2 | 5 | 153 | 2 | 149 | 7.41e-48 | 152 |
| Msa0568130 | AT5G66110.3 | 49.324 | 148 | 68 | 3 | 10 | 153 | 3 | 147 | 3.79e-47 | 150 |
| Msa0568130 | AT5G66110.1 | 49.324 | 148 | 68 | 3 | 10 | 153 | 3 | 147 | 3.79e-47 | 150 |
| Msa0568130 | AT4G35060.1 | 44.444 | 153 | 80 | 3 | 5 | 153 | 2 | 153 | 1.01e-41 | 136 |
| Msa0568130 | AT5G66110.2 | 50.413 | 121 | 56 | 2 | 37 | 153 | 1 | 121 | 7.08e-40 | 130 |
| Msa0568130 | AT5G17450.2 | 53.465 | 101 | 44 | 2 | 54 | 153 | 7 | 105 | 2.72e-31 | 108 |
| Msa0568130 | AT1G06330.1 | 37.908 | 153 | 65 | 5 | 28 | 153 | 1 | 150 | 6.80e-25 | 94.0 |
| Msa0568130 | AT2G18196.1 | 38.806 | 134 | 74 | 4 | 28 | 153 | 45 | 178 | 3.59e-24 | 92.8 |
| Msa0568130 | AT4G10465.1 | 40.714 | 140 | 75 | 4 | 22 | 153 | 44 | 183 | 8.14e-23 | 89.4 |
| Msa0568130 | AT3G56891.1 | 36.601 | 153 | 69 | 4 | 28 | 153 | 15 | 166 | 3.23e-22 | 87.4 |
| Msa0568130 | AT3G56891.2 | 35.417 | 144 | 65 | 4 | 37 | 153 | 1 | 143 | 1.30e-19 | 80.1 |
| Msa0568130 | AT2G18196.2 | 36.000 | 125 | 72 | 4 | 37 | 153 | 1 | 125 | 4.90e-19 | 78.2 |
| Msa0568130 | AT1G29100.2 | 35.135 | 148 | 66 | 5 | 31 | 153 | 5 | 147 | 7.72e-18 | 75.5 |
| Msa0568130 | AT1G29100.1 | 34.247 | 146 | 66 | 5 | 33 | 153 | 1 | 141 | 1.55e-16 | 72.0 |
| Msa0568130 | AT3G06130.1 | 49.254 | 67 | 34 | 0 | 27 | 93 | 8 | 74 | 4.11e-14 | 68.9 |
| Msa0568130 | AT5G37860.1 | 40.000 | 90 | 51 | 1 | 28 | 114 | 9 | 98 | 7.67e-14 | 67.0 |
| Msa0568130 | AT3G06130.2 | 49.254 | 67 | 34 | 0 | 27 | 93 | 8 | 74 | 8.73e-14 | 67.8 |
| Msa0568130 | AT3G48970.1 | 38.686 | 137 | 71 | 5 | 30 | 153 | 4 | 140 | 9.20e-14 | 64.7 |
| Msa0568130 | AT3G48970.2 | 38.686 | 137 | 71 | 5 | 30 | 153 | 2 | 138 | 9.80e-14 | 64.7 |
| Msa0568130 | AT3G48970.3 | 38.686 | 137 | 71 | 5 | 30 | 153 | 2 | 138 | 9.80e-14 | 64.7 |
| Msa0568130 | AT1G56210.1 | 46.667 | 75 | 40 | 0 | 33 | 107 | 44 | 118 | 2.17e-13 | 66.6 |
| Msa0568130 | AT5G27690.1 | 46.774 | 62 | 33 | 0 | 33 | 94 | 34 | 95 | 2.22e-13 | 66.6 |
| Msa0568130 | AT1G66240.1 | 47.692 | 65 | 34 | 0 | 29 | 93 | 33 | 97 | 2.43e-13 | 62.8 |
| Msa0568130 | AT3G56240.3 | 48.485 | 66 | 34 | 0 | 29 | 94 | 3 | 68 | 5.50e-13 | 62.4 |
| Msa0568130 | AT3G56240.1 | 48.485 | 66 | 34 | 0 | 29 | 94 | 3 | 68 | 5.50e-13 | 62.4 |
| Msa0568130 | AT5G19090.5 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 6.86e-13 | 65.5 |
| Msa0568130 | AT5G19090.4 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 6.86e-13 | 65.5 |
| Msa0568130 | AT5G19090.1 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 6.86e-13 | 65.5 |
| Msa0568130 | AT1G23000.1 | 45.070 | 71 | 39 | 0 | 27 | 97 | 11 | 81 | 7.39e-13 | 65.1 |
| Msa0568130 | AT5G19090.2 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 7.90e-13 | 65.1 |
| Msa0568130 | AT5G19090.3 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 7.90e-13 | 65.1 |
| Msa0568130 | AT1G23000.2 | 45.070 | 71 | 39 | 0 | 27 | 97 | 71 | 141 | 8.38e-13 | 65.1 |
| Msa0568130 | AT3G05220.1 | 47.761 | 67 | 35 | 0 | 27 | 93 | 8 | 74 | 1.62e-11 | 61.6 |
Find 44 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTATATTCAAAAGTAAAA+TGG | 0.226407 | 4_1:+69712486 | None:intergenic |
| TAACTCAAGTAGATTCAAAA+AGG | 0.268860 | 4_1:+69712611 | None:intergenic |
| TAAAGAAGTTCTATATAAAT+TGG | 0.304048 | 4_1:-69712553 | Msa0568130:five_prime_UTR |
| TACATGATAGAACATGCATT+TGG | 0.333354 | 4_1:+69711925 | None:intergenic |
| AAGTAAAATGGTTACTGAAA+TGG | 0.367936 | 4_1:+69712498 | None:intergenic |
| CAGGGAAGAAGGCTGAAATT+TGG | 0.369704 | 4_1:-69712107 | Msa0568130:CDS |
| CTGAAGAAGGCTAAGTCAAC+AGG | 0.388802 | 4_1:-69712126 | Msa0568130:CDS |
| CTTGTCATGGTTCCAGTGGC+TGG | 0.390737 | 4_1:+69711988 | None:intergenic |
| CTGTGATGGCTGTGAGCTTA+AGG | 0.395228 | 4_1:-69712348 | Msa0568130:CDS |
| AGTGACAGTAACTGGGTTTG+TGG | 0.423511 | 4_1:-69712163 | Msa0568130:CDS |
| ACATGATAGAACATGCATTT+GGG | 0.432872 | 4_1:+69711926 | None:intergenic |
| ACCAAGTTGTATGGCACATA+AGG | 0.433226 | 4_1:+69712084 | None:intergenic |
| TCACTGAACATGTTGACATA+AGG | 0.444110 | 4_1:+69711955 | None:intergenic |
| CACTGAACATGTTGACATAA+GGG | 0.445263 | 4_1:+69711956 | None:intergenic |
| TGTGGAGCTAAAGGTTAGAA+TGG | 0.454276 | 4_1:-69712372 | Msa0568130:CDS |
| TCTTCTTCTTCTTGAGGTGG+TGG | 0.456850 | 4_1:+69712408 | None:intergenic |
| GAATATACAGAAATGGGAGT+TGG | 0.487424 | 4_1:-69712473 | Msa0568130:exon |
| AAAACTCTTTCTTCACTAAG+TGG | 0.490262 | 4_1:-69712320 | Msa0568130:intron |
| GGTTGAGCCACCAAGTTGTA+TGG | 0.490787 | 4_1:+69712075 | None:intergenic |
| GGCTAAGTCAACAGGGAAGA+AGG | 0.492744 | 4_1:-69712118 | Msa0568130:CDS |
| AATGGGAGTTGGTGGCACTT+TGG | 0.493833 | 4_1:-69712462 | Msa0568130:CDS |
| GTGGAGAATGCTCCAGCCAC+TGG | 0.508052 | 4_1:-69712000 | Msa0568130:CDS |
| TCATAAGAAGAAACAGCATA+TGG | 0.511094 | 4_1:+69712054 | None:intergenic |
| GTTACAAACTGTGGAGCTAA+AGG | 0.513537 | 4_1:-69712381 | Msa0568130:CDS |
| GCCTTATGTGCCATACAACT+TGG | 0.527251 | 4_1:-69712085 | Msa0568130:CDS |
| TTAAGAAAAGTCCATAATGT+AGG | 0.527919 | 4_1:+69711781 | None:intergenic |
| TTCAAACAAGGTGCTGAAGA+AGG | 0.528858 | 4_1:-69712139 | Msa0568130:CDS |
| TTATGTGCCATACAACTTGG+TGG | 0.531787 | 4_1:-69712082 | Msa0568130:CDS |
| ATATCTTGTCATGGTTCCAG+TGG | 0.557252 | 4_1:+69711984 | None:intergenic |
| TCCACTCTCCTCACATAACC+AGG | 0.557368 | 4_1:+69712018 | None:intergenic |
| CTGTTTCTTCTTATGACAAG+AGG | 0.561769 | 4_1:-69712047 | Msa0568130:CDS |
| TATACAGAAATGGGAGTTGG+TGG | 0.562668 | 4_1:-69712470 | Msa0568130:exon |
| GAAGAAGCAGTTACAAACTG+TGG | 0.572842 | 4_1:-69712390 | Msa0568130:CDS |
| AGGGTCTTCATATCTTGTCA+TGG | 0.576931 | 4_1:+69711975 | None:intergenic |
| TGTTTCTTCTTATGACAAGA+GGG | 0.580345 | 4_1:-69712046 | Msa0568130:CDS |
| TATGACAAGAGGGCTCCTCC+TGG | 0.583575 | 4_1:-69712036 | Msa0568130:CDS |
| GATTGCAGGGGTACAATCAG+TGG | 0.611828 | 4_1:-69712208 | Msa0568130:intron |
| TCCTGGTTATGTGAGGAGAG+TGG | 0.613631 | 4_1:-69712019 | Msa0568130:CDS |
| TGGGTTTGTGGATTCAAACA+AGG | 0.634817 | 4_1:-69712151 | Msa0568130:CDS |
| TTGTCTGATCTAGTGAGCAG+TGG | 0.656529 | 4_1:-69712434 | Msa0568130:CDS |
| GGGCTCCTCCTGGTTATGTG+AGG | 0.665943 | 4_1:-69712026 | Msa0568130:CDS |
| AAGGTTAGAATGGACTGTGA+TGG | 0.679131 | 4_1:-69712362 | Msa0568130:CDS |
| TGAAGAAGGCTAAGTCAACA+GGG | 0.687731 | 4_1:-69712125 | Msa0568130:CDS |
| ACTCTCCTCACATAACCAGG+AGG | 0.754338 | 4_1:+69712021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGAAGTTCTATATAAAT+TGG | - | chr4_1:69711827-69711846 | Msa0568130:three_prime_UTR | 15.0% |
| !! | TAAAGAAGTTCTATATAAAT+TGG | - | chr4_1:69711827-69711846 | Msa0568130:three_prime_UTR | 15.0% |
| !! | CTGTATATTCAAAAGTAAAA+TGG | + | chr4_1:69711897-69711916 | None:intergenic | 20.0% |
| !!! | TACTTTTGAATATACAGAAA+TGG | - | chr4_1:69711900-69711919 | Msa0568130:three_prime_UTR | 20.0% |
| !!! | ACTTTTGAATATACAGAAAT+GGG | - | chr4_1:69711901-69711920 | Msa0568130:three_prime_UTR | 20.0% |
| !!! | TTTTTCTAGTTTACTTTTTC+TGG | - | chr4_1:69712554-69712573 | Msa0568130:five_prime_UTR | 20.0% |
| !! | CTGTATATTCAAAAGTAAAA+TGG | + | chr4_1:69711897-69711916 | None:intergenic | 20.0% |
| !!! | TACTTTTGAATATACAGAAA+TGG | - | chr4_1:69711900-69711919 | Msa0568130:three_prime_UTR | 20.0% |
| !!! | ACTTTTGAATATACAGAAAT+GGG | - | chr4_1:69711901-69711920 | Msa0568130:three_prime_UTR | 20.0% |
| !!! | TTTTTCTAGTTTACTTTTTC+TGG | - | chr4_1:69712554-69712573 | Msa0568130:five_prime_UTR | 20.0% |
| ! | AACTCAAGTAGATTCAAAAA+GGG | + | chr4_1:69711771-69711790 | None:intergenic | 25.0% |
| ! | TAACTCAAGTAGATTCAAAA+AGG | + | chr4_1:69711772-69711791 | None:intergenic | 25.0% |
| ! | TCAAACAAGACAAAAACTAT+AGG | + | chr4_1:69711802-69711821 | None:intergenic | 25.0% |
| ! | AAGTAAAATGGTTACTGAAA+TGG | + | chr4_1:69711885-69711904 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTCTTTCTAAGCT+TGG | - | chr4_1:69712490-69712509 | Msa0568130:five_prime_UTR | 25.0% |
| ! | TTAAGAAAAGTCCATAATGT+AGG | + | chr4_1:69712602-69712621 | None:intergenic | 25.0% |
| !! | GACTTTTCTTAACATGAAAA+AGG | - | chr4_1:69712610-69712629 | Msa0568130:five_prime_UTR | 25.0% |
| ! | AACTCAAGTAGATTCAAAAA+GGG | + | chr4_1:69711771-69711790 | None:intergenic | 25.0% |
| ! | TAACTCAAGTAGATTCAAAA+AGG | + | chr4_1:69711772-69711791 | None:intergenic | 25.0% |
| ! | TCAAACAAGACAAAAACTAT+AGG | + | chr4_1:69711802-69711821 | None:intergenic | 25.0% |
| ! | AAGTAAAATGGTTACTGAAA+TGG | + | chr4_1:69711885-69711904 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTCTTTCTAAGCT+TGG | - | chr4_1:69712490-69712509 | Msa0568130:five_prime_UTR | 25.0% |
| ! | TTAAGAAAAGTCCATAATGT+AGG | + | chr4_1:69712602-69712621 | None:intergenic | 25.0% |
| !! | GACTTTTCTTAACATGAAAA+AGG | - | chr4_1:69712610-69712629 | Msa0568130:five_prime_UTR | 25.0% |
| AAAACTCTTTCTTCACTAAG+TGG | - | chr4_1:69712060-69712079 | Msa0568130:CDS | 30.0% | |
| CTTCATGTTGAAAATGTTAC+AGG | + | chr4_1:69712134-69712153 | None:intergenic | 30.0% | |
| ATGAAGTTGCTGAAATGAAA+TGG | - | chr4_1:69712148-69712167 | Msa0568130:CDS | 30.0% | |
| TCATAAGAAGAAACAGCATA+TGG | + | chr4_1:69712329-69712348 | None:intergenic | 30.0% | |
| TGTTTCTTCTTATGACAAGA+GGG | - | chr4_1:69712334-69712353 | Msa0568130:CDS | 30.0% | |
| ACATGATAGAACATGCATTT+GGG | + | chr4_1:69712457-69712476 | None:intergenic | 30.0% | |
| TACATGATAGAACATGCATT+TGG | + | chr4_1:69712458-69712477 | None:intergenic | 30.0% | |
| AAAACTCTTTCTTCACTAAG+TGG | - | chr4_1:69712060-69712079 | Msa0568130:CDS | 30.0% | |
| CTTCATGTTGAAAATGTTAC+AGG | + | chr4_1:69712134-69712153 | None:intergenic | 30.0% | |
| ATGAAGTTGCTGAAATGAAA+TGG | - | chr4_1:69712148-69712167 | Msa0568130:CDS | 30.0% | |
| TCATAAGAAGAAACAGCATA+TGG | + | chr4_1:69712329-69712348 | None:intergenic | 30.0% | |
| TGTTTCTTCTTATGACAAGA+GGG | - | chr4_1:69712334-69712353 | Msa0568130:CDS | 30.0% | |
| ACATGATAGAACATGCATTT+GGG | + | chr4_1:69712457-69712476 | None:intergenic | 30.0% | |
| TACATGATAGAACATGCATT+TGG | + | chr4_1:69712458-69712477 | None:intergenic | 30.0% | |
| GAATATACAGAAATGGGAGT+TGG | - | chr4_1:69711907-69711926 | Msa0568130:exon | 35.0% | |
| TGAAATGAAATGGTGATTGC+AGG | - | chr4_1:69712158-69712177 | Msa0568130:CDS | 35.0% | |
| GAAATGAAATGGTGATTGCA+GGG | - | chr4_1:69712159-69712178 | Msa0568130:CDS | 35.0% | |
| AAATGAAATGGTGATTGCAG+GGG | - | chr4_1:69712160-69712179 | Msa0568130:CDS | 35.0% | |
| AGCAAAAAGTGACAGTAACT+GGG | - | chr4_1:69712210-69712229 | Msa0568130:intron | 35.0% | |
| ! | CTGTTTCTTCTTATGACAAG+AGG | - | chr4_1:69712333-69712352 | Msa0568130:CDS | 35.0% |
| CACTGAACATGTTGACATAA+GGG | + | chr4_1:69712427-69712446 | None:intergenic | 35.0% | |
| TCACTGAACATGTTGACATA+AGG | + | chr4_1:69712428-69712447 | None:intergenic | 35.0% | |
| !!! | GCTCTTGTTTTCCTACATTA+TGG | - | chr4_1:69712588-69712607 | Msa0568130:five_prime_UTR | 35.0% |
| GAATATACAGAAATGGGAGT+TGG | - | chr4_1:69711907-69711926 | Msa0568130:exon | 35.0% | |
| TGAAATGAAATGGTGATTGC+AGG | - | chr4_1:69712158-69712177 | Msa0568130:CDS | 35.0% | |
| GAAATGAAATGGTGATTGCA+GGG | - | chr4_1:69712159-69712178 | Msa0568130:CDS | 35.0% | |
| AAATGAAATGGTGATTGCAG+GGG | - | chr4_1:69712160-69712179 | Msa0568130:CDS | 35.0% | |
| AGCAAAAAGTGACAGTAACT+GGG | - | chr4_1:69712210-69712229 | Msa0568130:intron | 35.0% | |
| ! | CTGTTTCTTCTTATGACAAG+AGG | - | chr4_1:69712333-69712352 | Msa0568130:CDS | 35.0% |
| CACTGAACATGTTGACATAA+GGG | + | chr4_1:69712427-69712446 | None:intergenic | 35.0% | |
| TCACTGAACATGTTGACATA+AGG | + | chr4_1:69712428-69712447 | None:intergenic | 35.0% | |
| !!! | GCTCTTGTTTTCCTACATTA+TGG | - | chr4_1:69712588-69712607 | Msa0568130:five_prime_UTR | 35.0% |
| TATACAGAAATGGGAGTTGG+TGG | - | chr4_1:69711910-69711929 | Msa0568130:exon | 40.0% | |
| ACTGCTTCTTCTTCTTCTTG+AGG | + | chr4_1:69711981-69712000 | None:intergenic | 40.0% | |
| GAAGAAGCAGTTACAAACTG+TGG | - | chr4_1:69711990-69712009 | Msa0568130:CDS | 40.0% | |
| GTTACAAACTGTGGAGCTAA+AGG | - | chr4_1:69711999-69712018 | Msa0568130:CDS | 40.0% | |
| TGTGGAGCTAAAGGTTAGAA+TGG | - | chr4_1:69712008-69712027 | Msa0568130:CDS | 40.0% | |
| !! | AAGGTTAGAATGGACTGTGA+TGG | - | chr4_1:69712018-69712037 | Msa0568130:CDS | 40.0% |
| !!! | CTGTCACTTTTTGCTGTTTG+CGG | + | chr4_1:69712205-69712224 | None:intergenic | 40.0% |
| CAGCAAAAAGTGACAGTAAC+TGG | - | chr4_1:69712209-69712228 | Msa0568130:intron | 40.0% | |
| TGGGTTTGTGGATTCAAACA+AGG | - | chr4_1:69712229-69712248 | Msa0568130:intron | 40.0% | |
| !! | TTCAAACAAGGTGCTGAAGA+AGG | - | chr4_1:69712241-69712260 | Msa0568130:intron | 40.0% |
| TGAAGAAGGCTAAGTCAACA+GGG | - | chr4_1:69712255-69712274 | Msa0568130:intron | 40.0% | |
| ACCAAGTTGTATGGCACATA+AGG | + | chr4_1:69712299-69712318 | None:intergenic | 40.0% | |
| TTATGTGCCATACAACTTGG+TGG | - | chr4_1:69712298-69712317 | Msa0568130:intron | 40.0% | |
| ATATCTTGTCATGGTTCCAG+TGG | + | chr4_1:69712399-69712418 | None:intergenic | 40.0% | |
| AGGGTCTTCATATCTTGTCA+TGG | + | chr4_1:69712408-69712427 | None:intergenic | 40.0% | |
| TATACAGAAATGGGAGTTGG+TGG | - | chr4_1:69711910-69711929 | Msa0568130:exon | 40.0% | |
| ACTGCTTCTTCTTCTTCTTG+AGG | + | chr4_1:69711981-69712000 | None:intergenic | 40.0% | |
| GAAGAAGCAGTTACAAACTG+TGG | - | chr4_1:69711990-69712009 | Msa0568130:CDS | 40.0% | |
| GTTACAAACTGTGGAGCTAA+AGG | - | chr4_1:69711999-69712018 | Msa0568130:CDS | 40.0% | |
| TGTGGAGCTAAAGGTTAGAA+TGG | - | chr4_1:69712008-69712027 | Msa0568130:CDS | 40.0% | |
| !! | AAGGTTAGAATGGACTGTGA+TGG | - | chr4_1:69712018-69712037 | Msa0568130:CDS | 40.0% |
| !!! | CTGTCACTTTTTGCTGTTTG+CGG | + | chr4_1:69712205-69712224 | None:intergenic | 40.0% |
| CAGCAAAAAGTGACAGTAAC+TGG | - | chr4_1:69712209-69712228 | Msa0568130:intron | 40.0% | |
| TGGGTTTGTGGATTCAAACA+AGG | - | chr4_1:69712229-69712248 | Msa0568130:intron | 40.0% | |
| !! | TTCAAACAAGGTGCTGAAGA+AGG | - | chr4_1:69712241-69712260 | Msa0568130:intron | 40.0% |
| TGAAGAAGGCTAAGTCAACA+GGG | - | chr4_1:69712255-69712274 | Msa0568130:intron | 40.0% | |
| ACCAAGTTGTATGGCACATA+AGG | + | chr4_1:69712299-69712318 | None:intergenic | 40.0% | |
| TTATGTGCCATACAACTTGG+TGG | - | chr4_1:69712298-69712317 | Msa0568130:intron | 40.0% | |
| ATATCTTGTCATGGTTCCAG+TGG | + | chr4_1:69712399-69712418 | None:intergenic | 40.0% | |
| AGGGTCTTCATATCTTGTCA+TGG | + | chr4_1:69712408-69712427 | None:intergenic | 40.0% | |
| TTGTCTGATCTAGTGAGCAG+TGG | - | chr4_1:69711946-69711965 | Msa0568130:CDS | 45.0% | |
| TCTTCTTCTTCTTGAGGTGG+TGG | + | chr4_1:69711975-69711994 | None:intergenic | 45.0% | |
| GCTTCTTCTTCTTCTTGAGG+TGG | + | chr4_1:69711978-69711997 | None:intergenic | 45.0% | |
| AGTGACAGTAACTGGGTTTG+TGG | - | chr4_1:69712217-69712236 | Msa0568130:intron | 45.0% | |
| CTGAAGAAGGCTAAGTCAAC+AGG | - | chr4_1:69712254-69712273 | Msa0568130:intron | 45.0% | |
| CAGGGAAGAAGGCTGAAATT+TGG | - | chr4_1:69712273-69712292 | Msa0568130:intron | 45.0% | |
| GCCTTATGTGCCATACAACT+TGG | - | chr4_1:69712295-69712314 | Msa0568130:intron | 45.0% | |
| TTGTCTGATCTAGTGAGCAG+TGG | - | chr4_1:69711946-69711965 | Msa0568130:CDS | 45.0% | |
| TCTTCTTCTTCTTGAGGTGG+TGG | + | chr4_1:69711975-69711994 | None:intergenic | 45.0% | |
| GCTTCTTCTTCTTCTTGAGG+TGG | + | chr4_1:69711978-69711997 | None:intergenic | 45.0% | |
| AGTGACAGTAACTGGGTTTG+TGG | - | chr4_1:69712217-69712236 | Msa0568130:intron | 45.0% | |
| CTGAAGAAGGCTAAGTCAAC+AGG | - | chr4_1:69712254-69712273 | Msa0568130:intron | 45.0% | |
| CAGGGAAGAAGGCTGAAATT+TGG | - | chr4_1:69712273-69712292 | Msa0568130:intron | 45.0% | |
| GCCTTATGTGCCATACAACT+TGG | - | chr4_1:69712295-69712314 | Msa0568130:intron | 45.0% | |
| !! | AATGGGAGTTGGTGGCACTT+TGG | - | chr4_1:69711918-69711937 | Msa0568130:exon | 50.0% |
| CTGTGATGGCTGTGAGCTTA+AGG | - | chr4_1:69712032-69712051 | Msa0568130:CDS | 50.0% | |
| ! | GATTGCAGGGGTACAATCAG+TGG | - | chr4_1:69712172-69712191 | Msa0568130:CDS | 50.0% |
| GGCTAAGTCAACAGGGAAGA+AGG | - | chr4_1:69712262-69712281 | Msa0568130:intron | 50.0% | |
| GGTTGAGCCACCAAGTTGTA+TGG | + | chr4_1:69712308-69712327 | None:intergenic | 50.0% | |
| ACTCTCCTCACATAACCAGG+AGG | + | chr4_1:69712362-69712381 | None:intergenic | 50.0% | |
| TCCTGGTTATGTGAGGAGAG+TGG | - | chr4_1:69712361-69712380 | Msa0568130:CDS | 50.0% | |
| TCCACTCTCCTCACATAACC+AGG | + | chr4_1:69712365-69712384 | None:intergenic | 50.0% | |
| !! | AATGGGAGTTGGTGGCACTT+TGG | - | chr4_1:69711918-69711937 | Msa0568130:exon | 50.0% |
| CTGTGATGGCTGTGAGCTTA+AGG | - | chr4_1:69712032-69712051 | Msa0568130:CDS | 50.0% | |
| ! | GATTGCAGGGGTACAATCAG+TGG | - | chr4_1:69712172-69712191 | Msa0568130:CDS | 50.0% |
| GGCTAAGTCAACAGGGAAGA+AGG | - | chr4_1:69712262-69712281 | Msa0568130:intron | 50.0% | |
| GGTTGAGCCACCAAGTTGTA+TGG | + | chr4_1:69712308-69712327 | None:intergenic | 50.0% | |
| ACTCTCCTCACATAACCAGG+AGG | + | chr4_1:69712362-69712381 | None:intergenic | 50.0% | |
| TCCTGGTTATGTGAGGAGAG+TGG | - | chr4_1:69712361-69712380 | Msa0568130:CDS | 50.0% | |
| TCCACTCTCCTCACATAACC+AGG | + | chr4_1:69712365-69712384 | None:intergenic | 50.0% | |
| TATGACAAGAGGGCTCCTCC+TGG | - | chr4_1:69712344-69712363 | Msa0568130:CDS | 55.0% | |
| CTTGTCATGGTTCCAGTGGC+TGG | + | chr4_1:69712395-69712414 | None:intergenic | 55.0% | |
| TATGACAAGAGGGCTCCTCC+TGG | - | chr4_1:69712344-69712363 | Msa0568130:CDS | 55.0% | |
| CTTGTCATGGTTCCAGTGGC+TGG | + | chr4_1:69712395-69712414 | None:intergenic | 55.0% | |
| GGGCTCCTCCTGGTTATGTG+AGG | - | chr4_1:69712354-69712373 | Msa0568130:CDS | 60.0% | |
| GTGGAGAATGCTCCAGCCAC+TGG | - | chr4_1:69712380-69712399 | Msa0568130:CDS | 60.0% | |
| GGGCTCCTCCTGGTTATGTG+AGG | - | chr4_1:69712354-69712373 | Msa0568130:CDS | 60.0% | |
| GTGGAGAATGCTCCAGCCAC+TGG | - | chr4_1:69712380-69712399 | Msa0568130:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69711751 | 69712651 | 69711751 | ID=Msa0568130;Name=Msa0568130 |
| chr4_1 | mRNA | 69711751 | 69712651 | 69711751 | ID=Msa0568130-mRNA-1;Parent=Msa0568130;Name=Msa0568130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=168|1|1|1|1|1|2|173|153 |
| chr4_1 | exon | 69711751 | 69712222 | 69711751 | ID=Msa0568130-mRNA-1:exon:23339;Parent=Msa0568130-mRNA-1 |
| chr4_1 | exon | 69712321 | 69712651 | 69712321 | ID=Msa0568130-mRNA-1:exon:23338;Parent=Msa0568130-mRNA-1 |
| chr4_1 | five_prime_UTR | 69712484 | 69712651 | 69712484 | ID=Msa0568130-mRNA-1:five_prime_utr;Parent=Msa0568130-mRNA-1 |
| chr4_1 | CDS | 69712321 | 69712483 | 69712321 | ID=Msa0568130-mRNA-1:cds;Parent=Msa0568130-mRNA-1 |
| chr4_1 | CDS | 69711924 | 69712222 | 69711924 | ID=Msa0568130-mRNA-1:cds;Parent=Msa0568130-mRNA-1 |
| chr4_1 | three_prime_UTR | 69711751 | 69711923 | 69711751 | ID=Msa0568130-mRNA-1:three_prime_utr;Parent=Msa0568130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
