Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570500 | XP_039684465.1 | 96.078 | 153 | 6 | 0 | 1 | 153 | 19 | 171 | 8.10e-106 | 309 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570500 | sp|O65657|HIP23_ARATH | 68.354 | 158 | 45 | 3 | 1 | 153 | 1 | 158 | 5.45e-68 | 206 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570500 | G7LAE8 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 4.01e-106 | 308 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0568130 | Msa0570500 | 0.808102 | 3.651747e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570500 | MtrunA17_Chr8g0382721 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 7.71e-110 | 308 |
Msa0570500 | MtrunA17_Chr3g0124411 | 78.065 | 155 | 29 | 3 | 1 | 153 | 1 | 152 | 2.46e-79 | 231 |
Msa0570500 | MtrunA17_Chr3g0115421 | 60.784 | 153 | 56 | 2 | 1 | 153 | 1 | 149 | 9.40e-56 | 171 |
Msa0570500 | MtrunA17_Chr5g0405811 | 53.205 | 156 | 66 | 4 | 5 | 153 | 2 | 157 | 2.95e-54 | 168 |
Msa0570500 | MtrunA17_Chr1g0160201 | 53.020 | 149 | 67 | 2 | 5 | 153 | 2 | 147 | 7.12e-53 | 164 |
Msa0570500 | MtrunA17_Chr6g0448861 | 53.247 | 154 | 67 | 3 | 5 | 153 | 2 | 155 | 8.11e-53 | 164 |
Msa0570500 | MtrunA17_Chr5g0407821 | 53.020 | 149 | 65 | 2 | 5 | 153 | 2 | 145 | 1.22e-50 | 158 |
Msa0570500 | MtrunA17_Chr3g0145621 | 49.677 | 155 | 72 | 3 | 5 | 153 | 2 | 156 | 3.41e-50 | 157 |
Msa0570500 | MtrunA17_Chr4g0036931 | 49.032 | 155 | 73 | 3 | 5 | 153 | 2 | 156 | 1.24e-49 | 156 |
Msa0570500 | MtrunA17_Chr7g0251491 | 54.887 | 133 | 56 | 2 | 22 | 153 | 41 | 170 | 2.24e-47 | 151 |
Msa0570500 | MtrunA17_Chr5g0422891 | 44.295 | 149 | 80 | 2 | 5 | 153 | 2 | 147 | 5.64e-41 | 134 |
Msa0570500 | MtrunA17_Chr2g0325601 | 35.333 | 150 | 65 | 6 | 28 | 153 | 1 | 142 | 4.35e-22 | 85.9 |
Msa0570500 | MtrunA17_Chr1g0189221 | 55.882 | 68 | 30 | 0 | 28 | 95 | 52 | 119 | 1.48e-21 | 85.5 |
Msa0570500 | MtrunA17_Chr1g0191671 | 52.778 | 72 | 34 | 0 | 22 | 93 | 3 | 74 | 1.25e-16 | 75.9 |
Msa0570500 | MtrunA17_Chr6g0471231 | 36.496 | 137 | 72 | 5 | 31 | 153 | 5 | 140 | 1.41e-16 | 71.6 |
Msa0570500 | MtrunA17_Chr6g0460361 | 40.367 | 109 | 55 | 4 | 54 | 153 | 3 | 110 | 5.40e-16 | 69.3 |
Msa0570500 | MtrunA17_Chr1g0208301 | 50.746 | 67 | 33 | 0 | 27 | 93 | 11 | 77 | 4.28e-15 | 71.2 |
Msa0570500 | MtrunA17_Chr2g0287751 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 2.64e-14 | 68.9 |
Msa0570500 | MtrunA17_Chr1g0198341 | 50.769 | 65 | 32 | 0 | 29 | 93 | 4 | 68 | 5.65e-14 | 63.2 |
Msa0570500 | MtrunA17_Chr7g0269081 | 47.692 | 65 | 34 | 0 | 29 | 93 | 22 | 86 | 9.37e-14 | 67.0 |
Msa0570500 | MtrunA17_Chr7g0218981 | 47.692 | 65 | 34 | 0 | 29 | 93 | 4 | 68 | 9.77e-14 | 63.9 |
Msa0570500 | MtrunA17_Chr4g0065651 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 1.45e-13 | 67.0 |
Msa0570500 | MtrunA17_Chr7g0272571 | 50.000 | 62 | 31 | 0 | 33 | 94 | 37 | 98 | 1.69e-13 | 66.6 |
Msa0570500 | MtrunA17_Chr0c22g0493881 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 2.96e-13 | 65.9 |
Msa0570500 | MtrunA17_Chr1g0192131 | 47.761 | 67 | 34 | 1 | 29 | 94 | 15 | 81 | 3.96e-13 | 65.5 |
Msa0570500 | MtrunA17_Chr3g0111541 | 46.875 | 64 | 34 | 0 | 29 | 92 | 12 | 75 | 4.37e-13 | 63.9 |
Msa0570500 | MtrunA17_Chr4g0065621 | 46.269 | 67 | 36 | 0 | 27 | 93 | 8 | 74 | 4.66e-13 | 65.5 |
Msa0570500 | MtrunA17_Chr4g0050451 | 37.647 | 85 | 50 | 2 | 28 | 112 | 1 | 82 | 8.73e-13 | 60.5 |
Msa0570500 | MtrunA17_Chr3g0094841 | 37.500 | 128 | 73 | 5 | 28 | 153 | 115 | 237 | 2.64e-12 | 62.4 |
Msa0570500 | MtrunA17_Chr4g0067291 | 46.970 | 66 | 35 | 0 | 29 | 94 | 74 | 139 | 3.53e-11 | 60.1 |
Msa0570500 | MtrunA17_Chr5g0429121 | 44.776 | 67 | 37 | 0 | 27 | 93 | 15 | 81 | 9.36e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570500 | AT4G39700.1 | 68.354 | 158 | 45 | 3 | 1 | 153 | 1 | 158 | 5.54e-69 | 206 |
Msa0570500 | AT1G22990.1 | 54.545 | 154 | 62 | 4 | 5 | 153 | 2 | 152 | 8.44e-56 | 172 |
Msa0570500 | AT4G08570.1 | 55.844 | 154 | 63 | 3 | 1 | 153 | 1 | 150 | 1.67e-54 | 169 |
Msa0570500 | AT1G71050.1 | 53.642 | 151 | 68 | 1 | 5 | 153 | 2 | 152 | 1.36e-53 | 166 |
Msa0570500 | AT1G22990.2 | 54.000 | 150 | 64 | 4 | 5 | 153 | 2 | 147 | 3.36e-53 | 165 |
Msa0570500 | AT4G38580.1 | 50.980 | 153 | 70 | 3 | 5 | 153 | 2 | 153 | 3.00e-52 | 163 |
Msa0570500 | AT4G38580.2 | 50.980 | 153 | 70 | 3 | 5 | 153 | 2 | 153 | 3.00e-52 | 163 |
Msa0570500 | AT5G17450.1 | 49.333 | 150 | 73 | 2 | 5 | 153 | 2 | 149 | 1.52e-47 | 151 |
Msa0570500 | AT5G66110.3 | 48.649 | 148 | 69 | 3 | 10 | 153 | 3 | 147 | 6.90e-47 | 149 |
Msa0570500 | AT5G66110.1 | 48.649 | 148 | 69 | 3 | 10 | 153 | 3 | 147 | 6.90e-47 | 149 |
Msa0570500 | AT4G35060.1 | 44.444 | 153 | 80 | 3 | 5 | 153 | 2 | 153 | 2.16e-41 | 135 |
Msa0570500 | AT5G66110.2 | 50.413 | 121 | 56 | 2 | 37 | 153 | 1 | 121 | 5.57e-40 | 131 |
Msa0570500 | AT5G17450.2 | 53.465 | 101 | 44 | 2 | 54 | 153 | 7 | 105 | 2.52e-31 | 108 |
Msa0570500 | AT1G06330.1 | 37.908 | 153 | 65 | 5 | 28 | 153 | 1 | 150 | 6.80e-25 | 94.0 |
Msa0570500 | AT2G18196.1 | 37.671 | 146 | 81 | 5 | 18 | 153 | 33 | 178 | 3.26e-24 | 92.8 |
Msa0570500 | AT4G10465.1 | 40.714 | 140 | 75 | 4 | 22 | 153 | 44 | 183 | 9.76e-23 | 89.0 |
Msa0570500 | AT3G56891.1 | 36.601 | 153 | 69 | 4 | 28 | 153 | 15 | 166 | 3.30e-22 | 87.4 |
Msa0570500 | AT3G56891.2 | 35.417 | 144 | 65 | 4 | 37 | 153 | 1 | 143 | 1.30e-19 | 80.1 |
Msa0570500 | AT2G18196.2 | 36.000 | 125 | 72 | 4 | 37 | 153 | 1 | 125 | 4.80e-19 | 78.2 |
Msa0570500 | AT1G29100.2 | 35.135 | 148 | 66 | 5 | 31 | 153 | 5 | 147 | 7.56e-18 | 75.5 |
Msa0570500 | AT1G29100.1 | 34.247 | 146 | 66 | 5 | 33 | 153 | 1 | 141 | 1.64e-16 | 72.0 |
Msa0570500 | AT3G06130.1 | 47.222 | 72 | 38 | 0 | 22 | 93 | 3 | 74 | 3.23e-14 | 69.3 |
Msa0570500 | AT5G37860.1 | 40.000 | 90 | 51 | 1 | 28 | 114 | 9 | 98 | 6.72e-14 | 67.4 |
Msa0570500 | AT3G06130.2 | 49.254 | 67 | 34 | 0 | 27 | 93 | 8 | 74 | 7.69e-14 | 67.8 |
Msa0570500 | AT3G48970.1 | 38.686 | 137 | 71 | 5 | 30 | 153 | 4 | 140 | 7.85e-14 | 65.1 |
Msa0570500 | AT3G48970.2 | 38.686 | 137 | 71 | 5 | 30 | 153 | 2 | 138 | 8.91e-14 | 64.7 |
Msa0570500 | AT3G48970.3 | 38.686 | 137 | 71 | 5 | 30 | 153 | 2 | 138 | 8.91e-14 | 64.7 |
Msa0570500 | AT5G27690.1 | 46.774 | 62 | 33 | 0 | 33 | 94 | 34 | 95 | 1.84e-13 | 66.6 |
Msa0570500 | AT1G56210.1 | 46.667 | 75 | 40 | 0 | 33 | 107 | 44 | 118 | 1.95e-13 | 66.6 |
Msa0570500 | AT1G66240.1 | 47.692 | 65 | 34 | 0 | 29 | 93 | 33 | 97 | 2.03e-13 | 62.8 |
Msa0570500 | AT3G56240.3 | 48.485 | 66 | 34 | 0 | 29 | 94 | 3 | 68 | 4.36e-13 | 62.4 |
Msa0570500 | AT3G56240.1 | 48.485 | 66 | 34 | 0 | 29 | 94 | 3 | 68 | 4.36e-13 | 62.4 |
Msa0570500 | AT5G19090.5 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 5.14e-13 | 65.9 |
Msa0570500 | AT5G19090.4 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 5.14e-13 | 65.9 |
Msa0570500 | AT5G19090.1 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 5.14e-13 | 65.9 |
Msa0570500 | AT5G19090.2 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 5.69e-13 | 65.5 |
Msa0570500 | AT5G19090.3 | 45.833 | 72 | 39 | 0 | 22 | 93 | 3 | 74 | 5.69e-13 | 65.5 |
Msa0570500 | AT1G23000.1 | 45.070 | 71 | 39 | 0 | 27 | 97 | 11 | 81 | 6.63e-13 | 65.1 |
Msa0570500 | AT1G23000.2 | 45.070 | 71 | 39 | 0 | 27 | 97 | 71 | 141 | 7.25e-13 | 65.1 |
Msa0570500 | AT3G05220.1 | 47.761 | 67 | 35 | 0 | 27 | 93 | 8 | 74 | 1.50e-11 | 61.6 |
Find 46 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCCTTACCTTGTAATTA+TGG | 0.172033 | 4_1:+72629418 | None:intergenic |
TACATGATAGAACATGCATT+TGG | 0.333354 | 4_1:+72625477 | None:intergenic |
CAGGGAAGAAAGCTGAAATT+TGG | 0.367304 | 4_1:-72625659 | Msa0570500:CDS |
CTGAAGAAGGCTAAGTCAAC+AGG | 0.388802 | 4_1:-72625678 | Msa0570500:CDS |
CTTGTCATGGTTCCAGTGGC+TGG | 0.390737 | 4_1:+72625540 | None:intergenic |
CTGTGATGGCTGTGAGCTTA+AGG | 0.395228 | 4_1:-72625900 | Msa0570500:CDS |
TGTAAAGAGCTTCTTTACTT+TGG | 0.412353 | 4_1:+72629485 | None:intergenic |
AGTGACAGTAACTGGGTTTG+TGG | 0.423511 | 4_1:-72625715 | Msa0570500:CDS |
ACATGATAGAACATGCATTT+GGG | 0.432872 | 4_1:+72625478 | None:intergenic |
ACCAAGTTGTATGGCACATA+AGG | 0.433226 | 4_1:+72625636 | None:intergenic |
TCACTGAACATGTTGACATA+AGG | 0.444110 | 4_1:+72625507 | None:intergenic |
CACTGAACATGTTGACATAA+GGG | 0.445263 | 4_1:+72625508 | None:intergenic |
TGTGGAGCTAAAGGTTAGAA+TGG | 0.454276 | 4_1:-72625924 | Msa0570500:CDS |
TCTTCTTCTTCTTGAGGTGG+TGG | 0.456850 | 4_1:+72625960 | None:intergenic |
GCCTCTTCTTCTTCTTGAGG+TGG | 0.468481 | 4_1:+72625957 | None:intergenic |
TATACAGAAATGGGAGTTAG+TGG | 0.487766 | 4_1:-72626022 | Msa0570500:intron |
AATGGGAGTTAGTGGCACTT+TGG | 0.488650 | 4_1:-72626014 | Msa0570500:CDS |
AAAACTCTTTCTTCACTAAG+TGG | 0.490262 | 4_1:-72625872 | Msa0570500:intron |
GGTTGAGCCACCAAGTTGTA+TGG | 0.490787 | 4_1:+72625627 | None:intergenic |
ACTGCCTCTTCTTCTTCTTG+AGG | 0.491895 | 4_1:+72625954 | None:intergenic |
TGGTTTGAGCTCGTATGCAC+AGG | 0.505926 | 4_1:+72629505 | None:intergenic |
GTGGAGAATGCTCCAGCCAC+TGG | 0.508052 | 4_1:-72625552 | Msa0570500:CDS |
TCATAAGAAGAAACAGCATA+TGG | 0.511094 | 4_1:+72625606 | None:intergenic |
GTTACAAACTGTGGAGCTAA+AGG | 0.521890 | 4_1:-72625933 | Msa0570500:CDS |
GCCTTATGTGCCATACAACT+TGG | 0.527251 | 4_1:-72625637 | Msa0570500:CDS |
TTAAGAAAAGTCCATAATGT+AGG | 0.527919 | 4_1:+72625330 | None:intergenic |
TTCAAACAAGGTGCTGAAGA+AGG | 0.528858 | 4_1:-72625691 | Msa0570500:CDS |
TTATGTGCCATACAACTTGG+TGG | 0.531787 | 4_1:-72625634 | Msa0570500:CDS |
ATTATTTATCCATAATTACA+AGG | 0.540357 | 4_1:-72629427 | Msa0570500:intron |
ACCACCTCAAGAAGAAGAAG+AGG | 0.548807 | 4_1:-72625958 | Msa0570500:CDS |
ATATCTTGTCATGGTTCCAG+TGG | 0.557252 | 4_1:+72625536 | None:intergenic |
TCCACTCTCCTCACATAACC+AGG | 0.557368 | 4_1:+72625570 | None:intergenic |
CTGTTTCTTCTTATGACAAG+AGG | 0.561769 | 4_1:-72625599 | Msa0570500:CDS |
AGGGTCTTCATATCTTGTCA+TGG | 0.576931 | 4_1:+72625527 | None:intergenic |
GAAGAGGCAGTTACAAACTG+TGG | 0.579662 | 4_1:-72625942 | Msa0570500:CDS |
TGTTTCTTCTTATGACAAGA+GGG | 0.580345 | 4_1:-72625598 | Msa0570500:CDS |
TATGACAAGAGGGCTCCTCC+TGG | 0.583575 | 4_1:-72625588 | Msa0570500:CDS |
GATTGCAGGGGTACAATCAG+TGG | 0.611828 | 4_1:-72625760 | Msa0570500:intron |
TCCTGGTTATGTGAGGAGAG+TGG | 0.613631 | 4_1:-72625571 | Msa0570500:CDS |
GCCTCTATCTATAAGTAGGT+AGG | 0.615066 | 4_1:-72629528 | None:intergenic |
TGGGTTTGTGGATTCAAACA+AGG | 0.634817 | 4_1:-72625703 | Msa0570500:CDS |
TTGTCTGATCTAGTGAGCAG+TGG | 0.656529 | 4_1:-72625986 | Msa0570500:CDS |
GGGCTCCTCCTGGTTATGTG+AGG | 0.665943 | 4_1:-72625578 | Msa0570500:CDS |
AAGGTTAGAATGGACTGTGA+TGG | 0.679131 | 4_1:-72625914 | Msa0570500:CDS |
TGAAGAAGGCTAAGTCAACA+GGG | 0.687731 | 4_1:-72625677 | Msa0570500:CDS |
ACTCTCCTCACATAACCAGG+AGG | 0.754338 | 4_1:+72625573 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTGATTTTTTTTTTTTTTTT+GGG | + | chr4_1:72626073-72626092 | None:intergenic | 10.0% |
!!! | TGTGATTTTTTTTTTTTTTT+TGG | + | chr4_1:72626074-72626093 | None:intergenic | 10.0% |
!! | ATTATTTATCCATAATTACA+AGG | - | chr4_1:72625386-72625405 | Msa0570500:three_prime_UTR | 15.0% |
!!! | ATTTTGTCTTAAATTTATAG+AGG | + | chr4_1:72625491-72625510 | None:intergenic | 15.0% |
!! | AAATACAAATGATAATTCTA+TGG | + | chr4_1:72625850-72625869 | None:intergenic | 15.0% |
!! | AAATACAAATGATAATTCTA+TGG | + | chr4_1:72625850-72625869 | None:intergenic | 15.0% |
!! | AAATACAAATGATAATTCTA+TGG | + | chr4_1:72625850-72625869 | None:intergenic | 15.0% |
!! | TAAAGAAGTTCTATATAAAT+TGG | - | chr4_1:72628708-72628727 | Msa0570500:intron | 15.0% |
!!! | AACTTTCTTTCTGAAAAAAA+TGG | + | chr4_1:72625424-72625443 | None:intergenic | 20.0% |
!!! | TAGAGGTGTATTTTTTTATT+GGG | + | chr4_1:72625474-72625493 | None:intergenic | 20.0% |
!!! | ATAGAGGTGTATTTTTTTAT+TGG | + | chr4_1:72625475-72625494 | None:intergenic | 20.0% |
!! | GAGATTATTGCATAATAATA+AGG | + | chr4_1:72625820-72625839 | None:intergenic | 20.0% |
!! | ATGATAATTCTATGGTATTT+GGG | + | chr4_1:72625842-72625861 | None:intergenic | 20.0% |
!! | AATGATAATTCTATGGTATT+TGG | + | chr4_1:72625843-72625862 | None:intergenic | 20.0% |
!! | GAGATTATTGCATAATAATA+AGG | + | chr4_1:72625820-72625839 | None:intergenic | 20.0% |
!! | ATGATAATTCTATGGTATTT+GGG | + | chr4_1:72625842-72625861 | None:intergenic | 20.0% |
!! | AATGATAATTCTATGGTATT+TGG | + | chr4_1:72625843-72625862 | None:intergenic | 20.0% |
!! | TACCAAACAAAAAATAACTT+GGG | + | chr4_1:72627080-72627099 | None:intergenic | 20.0% |
!! | ATACCAAACAAAAAATAACT+TGG | + | chr4_1:72627081-72627100 | None:intergenic | 20.0% |
!!! | AAGTTATTTTTTGTTTGGTA+TGG | - | chr4_1:72627080-72627099 | Msa0570500:intron | 20.0% |
!!! | TCTATGTTTTATGCTATTTT+TGG | + | chr4_1:72627350-72627369 | None:intergenic | 20.0% |
!!! | ATTTTTCAATTAGATCAAAC+AGG | - | chr4_1:72627511-72627530 | Msa0570500:intron | 20.0% |
!! | GAGATTATTGCATAATAATA+AGG | + | chr4_1:72625820-72625839 | None:intergenic | 20.0% |
!! | ATGATAATTCTATGGTATTT+GGG | + | chr4_1:72625842-72625861 | None:intergenic | 20.0% |
!! | AATGATAATTCTATGGTATT+TGG | + | chr4_1:72625843-72625862 | None:intergenic | 20.0% |
!! | CTGTATATTCAAAAGTAAAA+TGG | + | chr4_1:72628778-72628797 | None:intergenic | 20.0% |
!!! | TACTTTTGAATATACAGAAA+TGG | - | chr4_1:72628781-72628800 | Msa0570500:intron | 20.0% |
!!! | ACTTTTGAATATACAGAAAT+GGG | - | chr4_1:72628782-72628801 | Msa0570500:intron | 20.0% |
!!! | TTTTTCTAGTTTACTTTTTC+TGG | - | chr4_1:72629438-72629457 | Msa0570500:five_prime_UTR | 20.0% |
! | TTATCCATAATTACAAGGTA+AGG | - | chr4_1:72625391-72625410 | Msa0570500:three_prime_UTR | 25.0% |
!! | ATTTTATAACTTATGCCCTT+AGG | + | chr4_1:72625557-72625576 | None:intergenic | 25.0% |
! | GATTATAAATAAAGATGCAG+AGG | - | chr4_1:72625666-72625685 | Msa0570500:CDS | 25.0% |
! | ATAAGAAAGTAATTGCAGAA+AGG | + | chr4_1:72625770-72625789 | None:intergenic | 25.0% |
! | ATAAGAAAGTAATTGCAGAA+AGG | + | chr4_1:72625770-72625789 | None:intergenic | 25.0% |
! | TTTCTCTATGATCCAAATAT+TGG | + | chr4_1:72626210-72626229 | None:intergenic | 25.0% |
!! | TGGTATCTCTTTTAATCTAA+TGG | - | chr4_1:72627048-72627067 | Msa0570500:intron | 25.0% |
!!! | TATTTTTTGTTTGGTATGGA+AGG | - | chr4_1:72627084-72627103 | Msa0570500:intron | 25.0% |
! | TTCAATTTAATGATAGCCAT+TGG | - | chr4_1:72627146-72627165 | Msa0570500:intron | 25.0% |
! | TCAATTTAATGATAGCCATT+GGG | - | chr4_1:72627147-72627166 | Msa0570500:intron | 25.0% |
! | ACAAAACAATTCTAGTAAGT+GGG | - | chr4_1:72627282-72627301 | Msa0570500:intron | 25.0% |
!!! | TTTATGCTATTTTTGGAATC+TGG | + | chr4_1:72627343-72627362 | None:intergenic | 25.0% |
!! | AAACCTTTTCAAACAATCAT+TGG | - | chr4_1:72627405-72627424 | Msa0570500:intron | 25.0% |
! | ATAAAGATGCTATTGATGAA+GGG | - | chr4_1:72627445-72627464 | Msa0570500:intron | 25.0% |
! | ATCTCAATATTAAGAGTAGA+TGG | + | chr4_1:72627712-72627731 | None:intergenic | 25.0% |
! | TAATATTGAGATCTCTTCAA+TGG | - | chr4_1:72627720-72627739 | Msa0570500:intron | 25.0% |
! | ATTGTTCATGTTCAATTACT+TGG | - | chr4_1:72628032-72628051 | Msa0570500:intron | 25.0% |
! | TTGTTCATGTTCAATTACTT+GGG | - | chr4_1:72628033-72628052 | Msa0570500:intron | 25.0% |
!! | ATTTTATAACTTATGCCCTT+AGG | + | chr4_1:72625557-72625576 | None:intergenic | 25.0% |
! | GATTATAAATAAAGATGCAG+AGG | - | chr4_1:72625666-72625685 | Msa0570500:CDS | 25.0% |
! | ATAAGAAAGTAATTGCAGAA+AGG | + | chr4_1:72625770-72625789 | None:intergenic | 25.0% |
! | AACTCAAGTAGATTCAAAAA+GGG | + | chr4_1:72628653-72628672 | None:intergenic | 25.0% |
! | TAACTCAAGTAGATTCAAAA+AGG | + | chr4_1:72628654-72628673 | None:intergenic | 25.0% |
! | AAGTAAAATGGTTACTGAAA+TGG | + | chr4_1:72628766-72628785 | None:intergenic | 25.0% |
!!! | GTTTTTTTTCTTTCTAAGCT+TGG | - | chr4_1:72629371-72629390 | Msa0570500:intron | 25.0% |
! | TTAAGAAAAGTCCATAATGT+AGG | + | chr4_1:72629486-72629505 | None:intergenic | 25.0% |
!! | GACTTTTCTTAACATGAAAA+AGG | - | chr4_1:72629494-72629513 | Msa0570500:five_prime_UTR | 25.0% |
TGTAAAGAGCTTCTTTACTT+TGG | + | chr4_1:72625331-72625350 | None:intergenic | 30.0% | |
AAATAAAGATGCAGAGGAAA+AGG | - | chr4_1:72625672-72625691 | Msa0570500:CDS | 30.0% | |
AATAAAGATGCAGAGGAAAA+GGG | - | chr4_1:72625673-72625692 | Msa0570500:CDS | 30.0% | |
!!! | AGACTGATTCCTATTTTTGA+TGG | - | chr4_1:72626134-72626153 | Msa0570500:intron | 30.0% |
!!! | GATTCCTATTTTTGATGGAA+AGG | - | chr4_1:72626139-72626158 | Msa0570500:intron | 30.0% |
TCTTCCTTTCCATCAAAAAT+AGG | + | chr4_1:72626146-72626165 | None:intergenic | 30.0% | |
TTGGATCATAGAGAAAATGA+AGG | - | chr4_1:72626214-72626233 | Msa0570500:intron | 30.0% | |
AGAAAACTATGAAGAGTCAA+AGG | - | chr4_1:72626436-72626455 | Msa0570500:intron | 30.0% | |
ATGTGCTGAGTATTAATTGT+TGG | + | chr4_1:72626860-72626879 | None:intergenic | 30.0% | |
!!! | GACCCAAGTTATTTTTTGTT+TGG | - | chr4_1:72627075-72627094 | Msa0570500:intron | 30.0% |
!! | TATGGAAGGTATTAGAAATG+TGG | - | chr4_1:72627098-72627117 | Msa0570500:intron | 30.0% |
GATCTAACAATAAACCTAGT+GGG | - | chr4_1:72627253-72627272 | Msa0570500:intron | 30.0% | |
CACAAAACAATTCTAGTAAG+TGG | - | chr4_1:72627281-72627300 | Msa0570500:intron | 30.0% | |
ATAAAACATAGACAACCCTA+TGG | - | chr4_1:72627358-72627377 | Msa0570500:intron | 30.0% | |
ACCTCTAAATTACAACCATA+GGG | + | chr4_1:72627376-72627395 | None:intergenic | 30.0% | |
AACCTCTAAATTACAACCAT+AGG | + | chr4_1:72627377-72627396 | None:intergenic | 30.0% | |
TCACCAATGATTGTTTGAAA+AGG | + | chr4_1:72627411-72627430 | None:intergenic | 30.0% | |
AATAGCATCTTTATGACTGA+AGG | + | chr4_1:72627439-72627458 | None:intergenic | 30.0% | |
CATAAAGATGCTATTGATGA+AGG | - | chr4_1:72627444-72627463 | Msa0570500:intron | 30.0% | |
TAAAGATGCTATTGATGAAG+GGG | - | chr4_1:72627446-72627465 | Msa0570500:intron | 30.0% | |
ACTTATCAGCAATCAGATAT+GGG | + | chr4_1:72627564-72627583 | None:intergenic | 30.0% | |
AACTTATCAGCAATCAGATA+TGG | + | chr4_1:72627565-72627584 | None:intergenic | 30.0% | |
GATAAGTTTATCCAAGTGAA+AGG | - | chr4_1:72627577-72627596 | Msa0570500:intron | 30.0% | |
AGTTACTAAGTACAACAAAG+TGG | - | chr4_1:72627606-72627625 | Msa0570500:intron | 30.0% | |
! | TAATTCTTTTTATGAGCAGG+AGG | - | chr4_1:72627656-72627675 | Msa0570500:intron | 30.0% |
!! | GCTTTGATTGATGATGTATT+AGG | - | chr4_1:72627751-72627770 | Msa0570500:intron | 30.0% |
TAATGTATTTCACATGCCAA+GGG | + | chr4_1:72627777-72627796 | None:intergenic | 30.0% | |
! | TTTTGCCAACCAATTACAAT+GGG | - | chr4_1:72627803-72627822 | Msa0570500:intron | 30.0% |
!! | TTTTGGGGAATTCATTTATC+AGG | - | chr4_1:72627936-72627955 | Msa0570500:intron | 30.0% |
TTATGTTATCATTCACCTTG+AGG | - | chr4_1:72628216-72628235 | Msa0570500:intron | 30.0% | |
AAATAAAGATGCAGAGGAAA+AGG | - | chr4_1:72625672-72625691 | Msa0570500:CDS | 30.0% | |
AATAAAGATGCAGAGGAAAA+GGG | - | chr4_1:72625673-72625692 | Msa0570500:CDS | 30.0% | |
! | TTTTTATGAGAGTTGTACAG+GGG | + | chr4_1:72628630-72628649 | None:intergenic | 30.0% |
! | GTTTTTATGAGAGTTGTACA+GGG | + | chr4_1:72628631-72628650 | None:intergenic | 30.0% |
CTCAAACAAGACAAAACTAT+AGG | + | chr4_1:72628684-72628703 | None:intergenic | 30.0% | |
AAAACTCTTTCTTCACTAAG+TGG | - | chr4_1:72628941-72628960 | Msa0570500:intron | 30.0% | |
CTTCATGTTGAAAATGTTAC+AGG | + | chr4_1:72629015-72629034 | None:intergenic | 30.0% | |
ATGAAGTTGCTGAAATGAAA+TGG | - | chr4_1:72629029-72629048 | Msa0570500:intron | 30.0% | |
TCATAAGAAGAAACAGCATA+TGG | + | chr4_1:72629210-72629229 | None:intergenic | 30.0% | |
TGTTTCTTCTTATGACAAGA+GGG | - | chr4_1:72629215-72629234 | Msa0570500:intron | 30.0% | |
ACATGATAGAACATGCATTT+GGG | + | chr4_1:72629338-72629357 | None:intergenic | 30.0% | |
TACATGATAGAACATGCATT+TGG | + | chr4_1:72629339-72629358 | None:intergenic | 30.0% | |
!!! | TCTTGTGAAGAGCTGTTTTT+GGG | + | chr4_1:72625361-72625380 | None:intergenic | 35.0% |
CCTTCCTTACCTTGTAATTA+TGG | + | chr4_1:72625398-72625417 | None:intergenic | 35.0% | |
CCATAATTACAAGGTAAGGA+AGG | - | chr4_1:72625395-72625414 | Msa0570500:three_prime_UTR | 35.0% | |
TAGGAGTCCTATATCTAACA+GGG | + | chr4_1:72625538-72625557 | None:intergenic | 35.0% | |
TTAGGAGTCCTATATCTAAC+AGG | + | chr4_1:72625539-72625558 | None:intergenic | 35.0% | |
TGTTAGATATAGGACTCCTA+AGG | - | chr4_1:72625538-72625557 | Msa0570500:CDS | 35.0% | |
GTTAGATATAGGACTCCTAA+GGG | - | chr4_1:72625539-72625558 | Msa0570500:CDS | 35.0% | |
TGTAACTGCTATAGTGAGTT+AGG | - | chr4_1:72625644-72625663 | Msa0570500:CDS | 35.0% | |
! | GCATTGGGTATTTTGTATGT+GGG | - | chr4_1:72625699-72625718 | Msa0570500:CDS | 35.0% |
!!! | ATTTTGTATGTGGGTTGGTT+TGG | - | chr4_1:72625708-72625727 | Msa0570500:CDS | 35.0% |
!!! | TTTTGTATGTGGGTTGGTTT+GGG | - | chr4_1:72625709-72625728 | Msa0570500:CDS | 35.0% |
TACATATCTGAACCAGTATC+TGG | - | chr4_1:72625871-72625890 | Msa0570500:intron | 35.0% | |
GGTGGATGATCTAGTTAAAA+CGG | - | chr4_1:72626174-72626193 | Msa0570500:intron | 35.0% | |
!! | GGTACTTTGAAGCCAATATT+TGG | - | chr4_1:72626195-72626214 | Msa0570500:intron | 35.0% |
TCTCATTCAGAATGTACTCA+TGG | + | chr4_1:72626412-72626431 | None:intergenic | 35.0% | |
AAACTATGAAGAGTCAAAGG+AGG | - | chr4_1:72626439-72626458 | Msa0570500:intron | 35.0% | |
GATAACAGGGTCAATTGTTA+AGG | - | chr4_1:72627024-72627043 | Msa0570500:intron | 35.0% | |
! | AAGGTATTAGAAATGTGGAC+AGG | - | chr4_1:72627103-72627122 | Msa0570500:intron | 35.0% |
AGGAATAGAGTTACTAGGTT+CGG | - | chr4_1:72627123-72627142 | Msa0570500:intron | 35.0% | |
TAGCCATTGGGTTATGATAA+AGG | - | chr4_1:72627159-72627178 | Msa0570500:intron | 35.0% | |
AGCCATTGGGTTATGATAAA+GGG | - | chr4_1:72627160-72627179 | Msa0570500:intron | 35.0% | |
AGTAGATGATACAAACCAGA+AGG | - | chr4_1:72627192-72627211 | Msa0570500:intron | 35.0% | |
GGATCTAACAATAAACCTAG+TGG | - | chr4_1:72627252-72627271 | Msa0570500:intron | 35.0% | |
AGTGGGTGAGAGAAATTAAA+AGG | - | chr4_1:72627299-72627318 | Msa0570500:intron | 35.0% | |
ACCCTATGGTTGTAATTTAG+AGG | - | chr4_1:72627372-72627391 | Msa0570500:intron | 35.0% | |
TTTATCCAAGTGAAAGGTGA+AGG | - | chr4_1:72627583-72627602 | Msa0570500:intron | 35.0% | |
! | GCGTAATTCTTTTTATGAGC+AGG | - | chr4_1:72627653-72627672 | Msa0570500:intron | 35.0% |
TATTGAGATCTCTTCAATGG+TGG | - | chr4_1:72627723-72627742 | Msa0570500:intron | 35.0% | |
CTAATGTATTTCACATGCCA+AGG | + | chr4_1:72627778-72627797 | None:intergenic | 35.0% | |
! | CTTTTGCCAACCAATTACAA+TGG | - | chr4_1:72627802-72627821 | Msa0570500:intron | 35.0% |
AATTCCACTCCCATTGTAAT+TGG | + | chr4_1:72627815-72627834 | None:intergenic | 35.0% | |
ATGACTCGATCACTTGAAAT+GGG | - | chr4_1:72627841-72627860 | Msa0570500:intron | 35.0% | |
! | TACAGCACAATGAGAGTTTT+TGG | - | chr4_1:72627919-72627938 | Msa0570500:intron | 35.0% |
! | ACAGCACAATGAGAGTTTTT+GGG | - | chr4_1:72627920-72627939 | Msa0570500:intron | 35.0% |
! | TGTCACTCTACTTCAAGTTA+TGG | - | chr4_1:72628178-72628197 | Msa0570500:intron | 35.0% |
! | GTCACTCTACTTCAAGTTAT+GGG | - | chr4_1:72628179-72628198 | Msa0570500:intron | 35.0% |
TGTTAGATATAGGACTCCTA+AGG | - | chr4_1:72625538-72625557 | Msa0570500:CDS | 35.0% | |
GTTAGATATAGGACTCCTAA+GGG | - | chr4_1:72625539-72625558 | Msa0570500:CDS | 35.0% | |
TGTAACTGCTATAGTGAGTT+AGG | - | chr4_1:72625644-72625663 | Msa0570500:CDS | 35.0% | |
! | GCATTGGGTATTTTGTATGT+GGG | - | chr4_1:72625699-72625718 | Msa0570500:CDS | 35.0% |
!!! | ATTTTGTATGTGGGTTGGTT+TGG | - | chr4_1:72625708-72625727 | Msa0570500:CDS | 35.0% |
!!! | TTTTGTATGTGGGTTGGTTT+GGG | - | chr4_1:72625709-72625728 | Msa0570500:CDS | 35.0% |
! | GGTTTTTATGAGAGTTGTAC+AGG | + | chr4_1:72628632-72628651 | None:intergenic | 35.0% |
TATACAGAAATGGGAGTTAG+TGG | - | chr4_1:72628791-72628810 | Msa0570500:intron | 35.0% | |
TGAAATGAAATGGTGATTGC+AGG | - | chr4_1:72629039-72629058 | Msa0570500:intron | 35.0% | |
GAAATGAAATGGTGATTGCA+GGG | - | chr4_1:72629040-72629059 | Msa0570500:intron | 35.0% | |
AAATGAAATGGTGATTGCAG+GGG | - | chr4_1:72629041-72629060 | Msa0570500:intron | 35.0% | |
AGCAAAAAGTGACAGTAACT+GGG | - | chr4_1:72629091-72629110 | Msa0570500:intron | 35.0% | |
! | CTGTTTCTTCTTATGACAAG+AGG | - | chr4_1:72629214-72629233 | Msa0570500:intron | 35.0% |
CACTGAACATGTTGACATAA+GGG | + | chr4_1:72629308-72629327 | None:intergenic | 35.0% | |
TCACTGAACATGTTGACATA+AGG | + | chr4_1:72629309-72629328 | None:intergenic | 35.0% | |
!!! | GCTCTTGTTTTCCTACATTA+TGG | - | chr4_1:72629472-72629491 | Msa0570500:five_prime_UTR | 35.0% |
!! | CTCTTGTGAAGAGCTGTTTT+TGG | + | chr4_1:72625362-72625381 | None:intergenic | 40.0% |
CTGAAACAGAACATGCTACA+AGG | + | chr4_1:72625447-72625466 | None:intergenic | 40.0% | |
ACATGCTCCCTGTTAGATAT+AGG | - | chr4_1:72625528-72625547 | Msa0570500:CDS | 40.0% | |
!! | GGCATTGGGTATTTTGTATG+TGG | - | chr4_1:72625698-72625717 | Msa0570500:CDS | 40.0% |
! | TGGGTATTTTGTATGTGGGT+TGG | - | chr4_1:72625703-72625722 | Msa0570500:CDS | 40.0% |
TCTGAACCAGTATCTAACAC+TGG | - | chr4_1:72626029-72626048 | Msa0570500:intron | 40.0% | |
CTGATACCAGTGTTAGATAC+TGG | + | chr4_1:72626038-72626057 | None:intergenic | 40.0% | |
TAACTAGATCATCCACCAGT+AGG | + | chr4_1:72626171-72626190 | None:intergenic | 40.0% | |
TAGAGAAAATGAAGGTCGAC+TGG | - | chr4_1:72626222-72626241 | Msa0570500:intron | 40.0% | |
AGAGAAAATGAAGGTCGACT+GGG | - | chr4_1:72626223-72626242 | Msa0570500:intron | 40.0% | |
GTTACTCTGTATGCTTTCAG+AGG | - | chr4_1:72626245-72626264 | Msa0570500:intron | 40.0% | |
!! | CTTCCAATTGGTGGTCTTAT+TGG | - | chr4_1:72626273-72626292 | Msa0570500:intron | 40.0% |
CTTCCAATAAGACCACCAAT+TGG | + | chr4_1:72626279-72626298 | None:intergenic | 40.0% | |
!! | TTGGTGGTCTTATTGGAAGA+AGG | - | chr4_1:72626280-72626299 | Msa0570500:intron | 40.0% |
!! | TGGTGGTCTTATTGGAAGAA+GGG | - | chr4_1:72626281-72626300 | Msa0570500:intron | 40.0% |
!! | ACGTGGAAGGTATTTGAAAG+AGG | - | chr4_1:72626317-72626336 | Msa0570500:intron | 40.0% |
AGAAATTCATCCCAGACCTA+TGG | - | chr4_1:72626348-72626367 | Msa0570500:intron | 40.0% | |
GAAATTCATCCCAGACCTAT+GGG | - | chr4_1:72626349-72626368 | Msa0570500:intron | 40.0% | |
TATGAAGAGTCAAAGGAGGT+TGG | - | chr4_1:72626443-72626462 | Msa0570500:intron | 40.0% | |
TGTACCATGCATTCTGTGAA+TGG | + | chr4_1:72626554-72626573 | None:intergenic | 40.0% | |
TGCATGGTACAAAAATCTGC+AGG | - | chr4_1:72626563-72626582 | Msa0570500:intron | 40.0% | |
TGAGACACAAAGATGTGAGA+AGG | - | chr4_1:72626634-72626653 | Msa0570500:intron | 40.0% | |
AAAGATGTGAGAAGGAGAGA+AGG | - | chr4_1:72626642-72626661 | Msa0570500:intron | 40.0% | |
TCTCTTGTTGCATCTGAAGA+CGG | + | chr4_1:72626806-72626825 | None:intergenic | 40.0% | |
TGTGAGGTCAAAAGGATAAC+AGG | - | chr4_1:72627010-72627029 | Msa0570500:intron | 40.0% | |
GTGAGGTCAAAAGGATAACA+GGG | - | chr4_1:72627011-72627030 | Msa0570500:intron | 40.0% | |
ACAGGGTCAATTGTTAAGGT+TGG | - | chr4_1:72627028-72627047 | Msa0570500:intron | 40.0% | |
TGGACAGGAATAGAGTTACT+AGG | - | chr4_1:72627118-72627137 | Msa0570500:intron | 40.0% | |
GCCATTGGGTTATGATAAAG+GGG | - | chr4_1:72627161-72627180 | Msa0570500:intron | 40.0% | |
CCATTGGGTTATGATAAAGG+GGG | - | chr4_1:72627162-72627181 | Msa0570500:intron | 40.0% | |
AGAAAAGCAGTGGAACAGAT+TGG | - | chr4_1:72627215-72627234 | Msa0570500:intron | 40.0% | |
! | AGATTGGTCAGGTTGTATGT+TGG | - | chr4_1:72627231-72627250 | Msa0570500:intron | 40.0% |
! | AACAATAAACCTAGTGGGTC+AGG | - | chr4_1:72627258-72627277 | Msa0570500:intron | 40.0% |
GGGTGAGAGAAATTAAAAGG+TGG | - | chr4_1:72627302-72627321 | Msa0570500:intron | 40.0% | |
ATTGATGAAGGGGCTCTTAA+AGG | - | chr4_1:72627456-72627475 | Msa0570500:intron | 40.0% | |
CAAACAGGAATTCCATCTCA+AGG | - | chr4_1:72627526-72627545 | Msa0570500:intron | 40.0% | |
GAATTCCATCTCAAGGTCAT+TGG | - | chr4_1:72627533-72627552 | Msa0570500:intron | 40.0% | |
TAACTCCTTCACCTTTCACT+TGG | + | chr4_1:72627591-72627610 | None:intergenic | 40.0% | |
! | TTTTATGAGCAGGAGGAACA+TGG | - | chr4_1:72627663-72627682 | Msa0570500:intron | 40.0% |
!! | TTGATGATGTATTAGGCCCT+TGG | - | chr4_1:72627758-72627777 | Msa0570500:intron | 40.0% |
GATGACTCGATCACTTGAAA+TGG | - | chr4_1:72627840-72627859 | Msa0570500:intron | 40.0% | |
! | CAGCACAATGAGAGTTTTTG+GGG | - | chr4_1:72627921-72627940 | Msa0570500:intron | 40.0% |
TGTTGCTACAGCACAAAGTA+AGG | + | chr4_1:72627998-72628017 | None:intergenic | 40.0% | |
TCAAGGCTACTCTAGTAGTT+AGG | - | chr4_1:72628076-72628095 | Msa0570500:intron | 40.0% | |
TATCATTCACCTTGAGGACA+AGG | - | chr4_1:72628222-72628241 | Msa0570500:intron | 40.0% | |
AAAGATTCACCTTGTCCTCA+AGG | + | chr4_1:72628234-72628253 | None:intergenic | 40.0% | |
TGAGGACAAGGTGAATCTTT+AGG | - | chr4_1:72628234-72628253 | Msa0570500:intron | 40.0% | |
GAGGACAAGGTGAATCTTTA+GGG | - | chr4_1:72628235-72628254 | Msa0570500:intron | 40.0% | |
AGGACAAGGTGAATCTTTAG+GGG | - | chr4_1:72628236-72628255 | Msa0570500:intron | 40.0% | |
!! | GGGGGAGTATTGTTAGATAT+AGG | - | chr4_1:72628257-72628276 | Msa0570500:intron | 40.0% |
!! | GGCATTGGGTATTTTGTATG+TGG | - | chr4_1:72625698-72625717 | Msa0570500:CDS | 40.0% |
! | TGGGTATTTTGTATGTGGGT+TGG | - | chr4_1:72625703-72625722 | Msa0570500:CDS | 40.0% |
GTTACAAACTGTGGAGCTAA+AGG | - | chr4_1:72628880-72628899 | Msa0570500:intron | 40.0% | |
TGTGGAGCTAAAGGTTAGAA+TGG | - | chr4_1:72628889-72628908 | Msa0570500:intron | 40.0% | |
!! | AAGGTTAGAATGGACTGTGA+TGG | - | chr4_1:72628899-72628918 | Msa0570500:intron | 40.0% |
!!! | CTGTCACTTTTTGCTGTTTG+CGG | + | chr4_1:72629086-72629105 | None:intergenic | 40.0% |
CAGCAAAAAGTGACAGTAAC+TGG | - | chr4_1:72629090-72629109 | Msa0570500:intron | 40.0% | |
TGGGTTTGTGGATTCAAACA+AGG | - | chr4_1:72629110-72629129 | Msa0570500:intron | 40.0% | |
!! | TTCAAACAAGGTGCTGAAGA+AGG | - | chr4_1:72629122-72629141 | Msa0570500:intron | 40.0% |
TGAAGAAGGCTAAGTCAACA+GGG | - | chr4_1:72629136-72629155 | Msa0570500:intron | 40.0% | |
CAGGGAAGAAAGCTGAAATT+TGG | - | chr4_1:72629154-72629173 | Msa0570500:intron | 40.0% | |
ACCAAGTTGTATGGCACATA+AGG | + | chr4_1:72629180-72629199 | None:intergenic | 40.0% | |
TTATGTGCCATACAACTTGG+TGG | - | chr4_1:72629179-72629198 | Msa0570500:intron | 40.0% | |
ATATCTTGTCATGGTTCCAG+TGG | + | chr4_1:72629280-72629299 | None:intergenic | 40.0% | |
AGGGTCTTCATATCTTGTCA+TGG | + | chr4_1:72629289-72629308 | None:intergenic | 40.0% | |
! | GCATGTATGTGGTTTGTAGG+TGG | + | chr4_1:72625514-72625533 | None:intergenic | 45.0% |
! | GGAGCATGTATGTGGTTTGT+AGG | + | chr4_1:72625517-72625536 | None:intergenic | 45.0% |
! | TCTAACAGGGAGCATGTATG+TGG | + | chr4_1:72625525-72625544 | None:intergenic | 45.0% |
AAAGATGCAGAGGAAAAGGG+AGG | - | chr4_1:72625676-72625695 | Msa0570500:CDS | 45.0% | |
AAGATGCAGAGGAAAAGGGA+GGG | - | chr4_1:72625677-72625696 | Msa0570500:CDS | 45.0% | |
CAGAAAGGTAACCAACCTCT+AGG | + | chr4_1:72625755-72625774 | None:intergenic | 45.0% | |
CAGAAAGGTAACCAACCTCT+AGG | + | chr4_1:72625755-72625774 | None:intergenic | 45.0% | |
ATCAGTCTCTCCAACATCAC+TGG | + | chr4_1:72626122-72626141 | None:intergenic | 45.0% | |
ATGGAAAGGAAGATGCCTAC+TGG | - | chr4_1:72626153-72626172 | Msa0570500:intron | 45.0% | |
TCAGAGGAGAAGCTTCCAAT+TGG | - | chr4_1:72626261-72626280 | Msa0570500:intron | 45.0% | |
CAAGCATATCCCATAGGTCT+GGG | + | chr4_1:72626361-72626380 | None:intergenic | 45.0% | |
TCAAGCATATCCCATAGGTC+TGG | + | chr4_1:72626362-72626381 | None:intergenic | 45.0% | |
CAGACTCAAGCATATCCCAT+AGG | + | chr4_1:72626367-72626386 | None:intergenic | 45.0% | |
GATATGCTTGAGTCTGCAGA+AGG | - | chr4_1:72626371-72626390 | Msa0570500:intron | 45.0% | |
!! | AGAGTCAAAGGAGGTTGGTA+AGG | - | chr4_1:72626448-72626467 | Msa0570500:intron | 45.0% |
! | GTTGGTAAGGAGACAAACTC+TGG | - | chr4_1:72626461-72626480 | Msa0570500:intron | 45.0% |
GACACCATTCACAGAATGCA+TGG | - | chr4_1:72626547-72626566 | Msa0570500:intron | 45.0% | |
TGCAGGTCACAATGAATCGA+TGG | - | chr4_1:72626580-72626599 | Msa0570500:intron | 45.0% | |
CTTCAGATGCAACAAGAGAC+AGG | - | chr4_1:72626807-72626826 | Msa0570500:intron | 45.0% | |
GCAACACACTTGCAACTGAA+CGG | - | chr4_1:72626954-72626973 | Msa0570500:intron | 45.0% | |
TGTTTCAACGTCGCTTCAGT+TGG | - | chr4_1:72626980-72626999 | Msa0570500:intron | 45.0% | |
GTTTCAACGTCGCTTCAGTT+GGG | - | chr4_1:72626981-72627000 | Msa0570500:intron | 45.0% | |
TTCAGTTGGGAAGGATTGTG+AGG | - | chr4_1:72626994-72627013 | Msa0570500:intron | 45.0% | |
GGAAGGATTGTGAGGTCAAA+AGG | - | chr4_1:72627002-72627021 | Msa0570500:intron | 45.0% | |
CCCCCTTTATCATAACCCAA+TGG | + | chr4_1:72627165-72627184 | None:intergenic | 45.0% | |
TTGGGTTATGATAAAGGGGG+TGG | - | chr4_1:72627165-72627184 | Msa0570500:intron | 45.0% | |
AACCAGAAGGAGAAAAGCAG+TGG | - | chr4_1:72627205-72627224 | Msa0570500:intron | 45.0% | |
!! | TTCCACTGCTTTTCTCCTTC+TGG | + | chr4_1:72627210-72627229 | None:intergenic | 45.0% |
GAGGAACATGGAAGTGGAAA+GGG | - | chr4_1:72627675-72627694 | Msa0570500:intron | 45.0% | |
! | GATCTCTTCAATGGTGGTGA+TGG | - | chr4_1:72627729-72627748 | Msa0570500:intron | 45.0% |
CCACTCCCATTGTAATTGGT+TGG | + | chr4_1:72627811-72627830 | None:intergenic | 45.0% | |
CCAACCAATTACAATGGGAG+TGG | - | chr4_1:72627808-72627827 | Msa0570500:intron | 45.0% | |
ACAATGGGAGTGGAATTGTG+TGG | - | chr4_1:72627818-72627837 | Msa0570500:intron | 45.0% | |
AAAACCGAGTCATTTCCTCC+AGG | + | chr4_1:72627892-72627911 | None:intergenic | 45.0% | |
TAAGGCGACAACTAGGACAA+TGG | + | chr4_1:72627980-72627999 | None:intergenic | 45.0% | |
CACAAAGTAAGGCGACAACT+AGG | + | chr4_1:72627987-72628006 | None:intergenic | 45.0% | |
CATGCAAGCTACTTGTGTCA+AGG | - | chr4_1:72628059-72628078 | Msa0570500:intron | 45.0% | |
CAAGGCTGAGATGAGAGAAT+TGG | + | chr4_1:72628122-72628141 | None:intergenic | 45.0% | |
ATTCTCTCATCTCAGCCTTG+AGG | - | chr4_1:72628122-72628141 | Msa0570500:intron | 45.0% | |
!!! | ACGGCTGTTTTTCTACTGGT+CGG | - | chr4_1:72628147-72628166 | Msa0570500:intron | 45.0% |
! | TACTTCAAGTTATGGGACCC+TGG | - | chr4_1:72628186-72628205 | Msa0570500:intron | 45.0% |
GATAACATAAGTGTCCGCCA+GGG | + | chr4_1:72628206-72628225 | None:intergenic | 45.0% | |
TGATAACATAAGTGTCCGCC+AGG | + | chr4_1:72628207-72628226 | None:intergenic | 45.0% | |
GGACAAGGTGAATCTTTAGG+GGG | - | chr4_1:72628237-72628256 | Msa0570500:intron | 45.0% | |
! | GACAAGGTGAATCTTTAGGG+GGG | - | chr4_1:72628238-72628257 | Msa0570500:intron | 45.0% |
! | ACAAGGTGAATCTTTAGGGG+GGG | - | chr4_1:72628239-72628258 | Msa0570500:intron | 45.0% |
AAAGATGCAGAGGAAAAGGG+AGG | - | chr4_1:72625676-72625695 | Msa0570500:CDS | 45.0% | |
AAGATGCAGAGGAAAAGGGA+GGG | - | chr4_1:72625677-72625696 | Msa0570500:CDS | 45.0% | |
CAGAAAGGTAACCAACCTCT+AGG | + | chr4_1:72625755-72625774 | None:intergenic | 45.0% | |
!! | TACAGGGGAGTGTTAGATAC+TGG | + | chr4_1:72628615-72628634 | None:intergenic | 45.0% |
AATGGGAGTTAGTGGCACTT+TGG | - | chr4_1:72628799-72628818 | Msa0570500:intron | 45.0% | |
TTGTCTGATCTAGTGAGCAG+TGG | - | chr4_1:72628827-72628846 | Msa0570500:intron | 45.0% | |
TCTTCTTCTTCTTGAGGTGG+TGG | + | chr4_1:72628856-72628875 | None:intergenic | 45.0% | |
ACCACCTCAAGAAGAAGAAG+AGG | - | chr4_1:72628855-72628874 | Msa0570500:intron | 45.0% | |
ACTGCCTCTTCTTCTTCTTG+AGG | + | chr4_1:72628862-72628881 | None:intergenic | 45.0% | |
GAAGAGGCAGTTACAAACTG+TGG | - | chr4_1:72628871-72628890 | Msa0570500:intron | 45.0% | |
AGTGACAGTAACTGGGTTTG+TGG | - | chr4_1:72629098-72629117 | Msa0570500:intron | 45.0% | |
CTGAAGAAGGCTAAGTCAAC+AGG | - | chr4_1:72629135-72629154 | Msa0570500:intron | 45.0% | |
GCCTTATGTGCCATACAACT+TGG | - | chr4_1:72629176-72629195 | Msa0570500:intron | 45.0% | |
TGGTTTGAGCTCGTATGCAC+AGG | + | chr4_1:72625311-72625330 | None:intergenic | 50.0% | |
!! | AGAGGAAAAGGGAGGGCATT+GGG | - | chr4_1:72625684-72625703 | Msa0570500:CDS | 50.0% |
CTAGGCTCTCTAACTCCTAG+AGG | - | chr4_1:72625737-72625756 | Msa0570500:CDS | 50.0% | |
GCTCTCTAACTCCTAGAGGT+TGG | - | chr4_1:72625741-72625760 | Msa0570500:CDS | 50.0% | |
GGAGTTAGAGAGCCAGATAC+TGG | + | chr4_1:72625886-72625905 | None:intergenic | 50.0% | |
!! | TCTGGCTCTCTAACTCCTAG+AGG | - | chr4_1:72625889-72625908 | Msa0570500:CDS | 50.0% |
GCTCTCTAACTCCTAGAGGT+TGG | - | chr4_1:72625741-72625760 | Msa0570500:CDS | 50.0% | |
AGAGTGAGAGCCAGTGATGT+TGG | - | chr4_1:72626109-72626128 | Msa0570500:intron | 50.0% | |
GAAAGGAAGATGCCTACTGG+TGG | - | chr4_1:72626156-72626175 | Msa0570500:intron | 50.0% | |
GAGGAGAAGCTTCCAATTGG+TGG | - | chr4_1:72626264-72626283 | Msa0570500:intron | 50.0% | |
CAATCAGAATGCGACGTGGA+AGG | - | chr4_1:72626304-72626323 | Msa0570500:intron | 50.0% | |
! | GGATCGCTGCTTAGTTTGAG+CGG | - | chr4_1:72626482-72626501 | Msa0570500:intron | 50.0% |
AATTCCTGATGTGACCGCTC+TGG | + | chr4_1:72626521-72626540 | None:intergenic | 50.0% | |
GATTGTGATGAAGGCGGATC+TGG | + | chr4_1:72626701-72626720 | None:intergenic | 50.0% | |
GGTGGTGATTGTGATGAAGG+CGG | + | chr4_1:72626707-72626726 | None:intergenic | 50.0% | |
! | GGTGGTGGTGATTGTGATGA+AGG | + | chr4_1:72626710-72626729 | None:intergenic | 50.0% |
TGACTAGAGTCTAGCGACTC+TGG | + | chr4_1:72626731-72626750 | None:intergenic | 50.0% | |
TTTCCCTTCCTCCTTGGATC+GGG | + | chr4_1:72626834-72626853 | None:intergenic | 50.0% | |
CTTTCCCTTCCTCCTTGGAT+CGG | + | chr4_1:72626835-72626854 | None:intergenic | 50.0% | |
!! | GCAAGTTGGTTGATGCCAGT+CGG | + | chr4_1:72626908-72626927 | None:intergenic | 50.0% |
TGGCATCAACCAACTTGCAG+TGG | - | chr4_1:72626910-72626929 | Msa0570500:intron | 50.0% | |
! | AGCAGTGGAACAGATTGGTC+AGG | - | chr4_1:72627220-72627239 | Msa0570500:intron | 50.0% |
! | TGTTTTGTGCCTGACCCACT+AGG | + | chr4_1:72627270-72627289 | None:intergenic | 50.0% |
CTGCTCCAATGACCTTGAGA+TGG | + | chr4_1:72627541-72627560 | None:intergenic | 50.0% | |
GGAGGAACATGGAAGTGGAA+AGG | - | chr4_1:72627674-72627693 | Msa0570500:intron | 50.0% | |
CTTGTCCAGCTCCCATCAAT+GGG | - | chr4_1:72627864-72627883 | Msa0570500:intron | 50.0% | |
TCCTCCAGGATCCCATTGAT+GGG | + | chr4_1:72627878-72627897 | None:intergenic | 50.0% | |
TTCCTCCAGGATCCCATTGA+TGG | + | chr4_1:72627879-72627898 | None:intergenic | 50.0% | |
GGATCCTGGAGGAAATGACT+CGG | - | chr4_1:72627885-72627904 | Msa0570500:intron | 50.0% | |
TCATCTCAGCCTTGAGGACA+CGG | - | chr4_1:72628128-72628147 | Msa0570500:intron | 50.0% | |
GAAAAACAGCCGTGTCCTCA+AGG | + | chr4_1:72628140-72628159 | None:intergenic | 50.0% | |
!!! | GGACACGGCTGTTTTTCTAC+TGG | - | chr4_1:72628143-72628162 | Msa0570500:intron | 50.0% |
! | TTCAAGTTATGGGACCCTGG+CGG | - | chr4_1:72628189-72628208 | Msa0570500:intron | 50.0% |
!! | AGAGGAAAAGGGAGGGCATT+GGG | - | chr4_1:72625684-72625703 | Msa0570500:CDS | 50.0% |
CTAGGCTCTCTAACTCCTAG+AGG | - | chr4_1:72625737-72625756 | Msa0570500:CDS | 50.0% | |
GCTCTCTAACTCCTAGAGGT+TGG | - | chr4_1:72625741-72625760 | Msa0570500:CDS | 50.0% | |
GCCTCTTCTTCTTCTTGAGG+TGG | + | chr4_1:72628859-72628878 | None:intergenic | 50.0% | |
CTGTGATGGCTGTGAGCTTA+AGG | - | chr4_1:72628913-72628932 | Msa0570500:intron | 50.0% | |
! | GATTGCAGGGGTACAATCAG+TGG | - | chr4_1:72629053-72629072 | Msa0570500:intron | 50.0% |
GGTTGAGCCACCAAGTTGTA+TGG | + | chr4_1:72629189-72629208 | None:intergenic | 50.0% | |
ACTCTCCTCACATAACCAGG+AGG | + | chr4_1:72629243-72629262 | None:intergenic | 50.0% | |
TCCTGGTTATGTGAGGAGAG+TGG | - | chr4_1:72629242-72629261 | Msa0570500:intron | 50.0% | |
TCCACTCTCCTCACATAACC+AGG | + | chr4_1:72629246-72629265 | None:intergenic | 50.0% | |
! | CAGAGGAAAAGGGAGGGCAT+TGG | - | chr4_1:72625683-72625702 | Msa0570500:CDS | 55.0% |
!! | GGGTTGGTTTGGGAGAGACT+AGG | - | chr4_1:72625719-72625738 | Msa0570500:CDS | 55.0% |
AGGGCAATCAGAATGCGACG+TGG | - | chr4_1:72626300-72626319 | Msa0570500:intron | 55.0% | |
CTAGAGTCTAGCGACTCTGG+TGG | + | chr4_1:72626728-72626747 | None:intergenic | 55.0% | |
AACCTGCGACCGATCTCCAA+CGG | - | chr4_1:72626750-72626769 | Msa0570500:intron | 55.0% | |
CGGTTCTCTCCGTTGGAGAT+CGG | + | chr4_1:72626762-72626781 | None:intergenic | 55.0% | |
GCATCTGAAGACGGCCAATC+CGG | + | chr4_1:72626797-72626816 | None:intergenic | 55.0% | |
TTCCCTTCCTCCTTGGATCG+GGG | + | chr4_1:72626833-72626852 | None:intergenic | 55.0% | |
TGGCTCTTTCCCTTCCTCCT+TGG | + | chr4_1:72626840-72626859 | None:intergenic | 55.0% | |
ACATACCACCGCCGCTGAAA+TGG | - | chr4_1:72626876-72626895 | Msa0570500:intron | 55.0% | |
! | TGGTTGATGCCAGTCGGTTC+CGG | + | chr4_1:72626902-72626921 | None:intergenic | 55.0% |
! | GCAAGTGTGTTGCTCGTCGT+CGG | + | chr4_1:72626947-72626966 | None:intergenic | 55.0% |
CAACGTCGCTTCAGTTGGGA+AGG | - | chr4_1:72626985-72627004 | Msa0570500:intron | 55.0% | |
GAGCAGGAGGAACATGGAAG+TGG | - | chr4_1:72627669-72627688 | Msa0570500:intron | 55.0% | |
GCTTGTCCAGCTCCCATCAA+TGG | - | chr4_1:72627863-72627882 | Msa0570500:intron | 55.0% | |
AGGATCCCATTGATGGGAGC+TGG | + | chr4_1:72627872-72627891 | None:intergenic | 55.0% | |
AGCTCCCATCAATGGGATCC+TGG | - | chr4_1:72627871-72627890 | Msa0570500:intron | 55.0% | |
TCCCATCAATGGGATCCTGG+AGG | - | chr4_1:72627874-72627893 | Msa0570500:intron | 55.0% | |
! | CAGAGGAAAAGGGAGGGCAT+TGG | - | chr4_1:72625683-72625702 | Msa0570500:CDS | 55.0% |
!! | GGGTTGGTTTGGGAGAGACT+AGG | - | chr4_1:72625719-72625738 | Msa0570500:CDS | 55.0% |
TATGACAAGAGGGCTCCTCC+TGG | - | chr4_1:72629225-72629244 | Msa0570500:intron | 55.0% | |
CTTGTCATGGTTCCAGTGGC+TGG | + | chr4_1:72629276-72629295 | None:intergenic | 55.0% | |
GCTTGAGTCTGCAGAAGGCG+AGG | - | chr4_1:72626376-72626395 | Msa0570500:intron | 60.0% | |
GCATCGAACCACCACCAGAG+CGG | - | chr4_1:72626504-72626523 | Msa0570500:intron | 60.0% | |
TGATGTGACCGCTCTGGTGG+TGG | + | chr4_1:72626515-72626534 | None:intergenic | 60.0% | |
ACCACCAGAGCGGTCACATC+AGG | - | chr4_1:72626514-72626533 | Msa0570500:intron | 60.0% | |
TCCTGATGTGACCGCTCTGG+TGG | + | chr4_1:72626518-72626537 | None:intergenic | 60.0% | |
GATCTGGTGTCTCCGGTGGA+GGG | + | chr4_1:72626685-72626704 | None:intergenic | 60.0% | |
GAAGGCGGATCTGGTGTCTC+CGG | + | chr4_1:72626692-72626711 | None:intergenic | 60.0% | |
GAGTCTAGCGACTCTGGTGG+TGG | + | chr4_1:72626725-72626744 | None:intergenic | 60.0% | |
AGAACCGCCACCCAAACCAC+CGG | - | chr4_1:72626775-72626794 | Msa0570500:intron | 60.0% | |
! | CAATCCGGTGGTTTGGGTGG+CGG | + | chr4_1:72626782-72626801 | None:intergenic | 60.0% |
GACGGCCAATCCGGTGGTTT+GGG | + | chr4_1:72626788-72626807 | None:intergenic | 60.0% | |
AGACGGCCAATCCGGTGGTT+TGG | + | chr4_1:72626789-72626808 | None:intergenic | 60.0% | |
TCTGAAGACGGCCAATCCGG+TGG | + | chr4_1:72626794-72626813 | None:intergenic | 60.0% | |
AAGAGACAGGCCCCGATCCA+AGG | - | chr4_1:72626820-72626839 | Msa0570500:intron | 60.0% | |
! | GTCGGTTCCGGCCATTTCAG+CGG | + | chr4_1:72626890-72626909 | None:intergenic | 60.0% |
CTGAAATGGCCGGAACCGAC+TGG | - | chr4_1:72626890-72626909 | Msa0570500:intron | 60.0% | |
GCGGTCGAACCACTGCAAGT+TGG | + | chr4_1:72626922-72626941 | None:intergenic | 60.0% | |
! | GTGTTGCTCGTCGTCGGTAG+CGG | + | chr4_1:72626941-72626960 | None:intergenic | 60.0% |
GGGCTCCTCCTGGTTATGTG+AGG | - | chr4_1:72629235-72629254 | Msa0570500:intron | 60.0% | |
GTGGAGAATGCTCCAGCCAC+TGG | - | chr4_1:72629261-72629280 | Msa0570500:intron | 60.0% | |
TCCCGATCTGCACCCTCCAC+CGG | - | chr4_1:72626670-72626689 | Msa0570500:intron | 65.0% | |
! | TCCGGTGGAGGGTGCAGATC+GGG | + | chr4_1:72626674-72626693 | None:intergenic | 65.0% |
! | CTCCGGTGGAGGGTGCAGAT+CGG | + | chr4_1:72626675-72626694 | None:intergenic | 65.0% |
GGATCTGGTGTCTCCGGTGG+AGG | + | chr4_1:72626686-72626705 | None:intergenic | 65.0% | |
CTCCGTTGGAGATCGGTCGC+AGG | + | chr4_1:72626755-72626774 | None:intergenic | 65.0% | |
! | TGGGTGGCGGTTCTCTCCGT+TGG | + | chr4_1:72626769-72626788 | None:intergenic | 65.0% |
CGCCACCCAAACCACCGGAT+TGG | - | chr4_1:72626780-72626799 | Msa0570500:intron | 65.0% | |
! | GGCCAATCCGGTGGTTTGGG+TGG | + | chr4_1:72626785-72626804 | None:intergenic | 65.0% |
AGACAGGCCCCGATCCAAGG+AGG | - | chr4_1:72626823-72626842 | Msa0570500:intron | 65.0% | |
AGGCCCCGATCCAAGGAGGA+AGG | - | chr4_1:72626827-72626846 | Msa0570500:intron | 65.0% | |
GGCCCCGATCCAAGGAGGAA+GGG | - | chr4_1:72626828-72626847 | Msa0570500:intron | 65.0% | |
ACCACCGCCGCTGAAATGGC+CGG | - | chr4_1:72626880-72626899 | Msa0570500:intron | 65.0% | |
GGTTCCGGCCATTTCAGCGG+CGG | + | chr4_1:72626887-72626906 | None:intergenic | 65.0% | |
GGCGGATCTGGTGTCTCCGG+TGG | + | chr4_1:72626689-72626708 | None:intergenic | 70.0% | |
TCCGGCCATTTCAGCGGCGG+TGG | + | chr4_1:72626884-72626903 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 72625300 | 72629535 | 72625300 | ID=Msa0570500;Name=Msa0570500 |
chr4_1 | mRNA | 72625300 | 72629535 | 72625300 | ID=Msa0570500-mRNA-1;Parent=Msa0570500;Name=Msa0570500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=110|1|1|1|0.5|0.33|3|176|153 |
chr4_1 | exon | 72625300 | 72625774 | 72625300 | ID=Msa0570500-mRNA-1:exon:24872;Parent=Msa0570500-mRNA-1 |
chr4_1 | exon | 72625873 | 72626037 | 72625873 | ID=Msa0570500-mRNA-1:exon:24871;Parent=Msa0570500-mRNA-1 |
chr4_1 | exon | 72629428 | 72629535 | 72629428 | ID=Msa0570500-mRNA-1:exon:24870;Parent=Msa0570500-mRNA-1 |
chr4_1 | five_prime_UTR | 72629428 | 72629535 | 72629428 | ID=Msa0570500-mRNA-1:five_prime_utr;Parent=Msa0570500-mRNA-1 |
chr4_1 | five_prime_UTR | 72626036 | 72626037 | 72626036 | ID=Msa0570500-mRNA-1:five_prime_utr;Parent=Msa0570500-mRNA-1 |
chr4_1 | CDS | 72625873 | 72626035 | 72625873 | ID=Msa0570500-mRNA-1:cds;Parent=Msa0570500-mRNA-1 |
chr4_1 | CDS | 72625476 | 72625774 | 72625476 | ID=Msa0570500-mRNA-1:cds;Parent=Msa0570500-mRNA-1 |
chr4_1 | three_prime_UTR | 72625300 | 72625475 | 72625300 | ID=Msa0570500-mRNA-1:three_prime_utr;Parent=Msa0570500-mRNA-1 |
Gene Sequence |
Protein sequence |