AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570500 MtrunA17_Chr8g0382721 96.078 153 6 0 1 153 1 153 7.71e-110 308
Msa0570500 MtrunA17_Chr3g0124411 78.065 155 29 3 1 153 1 152 2.46e-79 231
Msa0570500 MtrunA17_Chr3g0115421 60.784 153 56 2 1 153 1 149 9.40e-56 171
Msa0570500 MtrunA17_Chr5g0405811 53.205 156 66 4 5 153 2 157 2.95e-54 168
Msa0570500 MtrunA17_Chr1g0160201 53.020 149 67 2 5 153 2 147 7.12e-53 164
Msa0570500 MtrunA17_Chr6g0448861 53.247 154 67 3 5 153 2 155 8.11e-53 164
Msa0570500 MtrunA17_Chr5g0407821 53.020 149 65 2 5 153 2 145 1.22e-50 158
Msa0570500 MtrunA17_Chr3g0145621 49.677 155 72 3 5 153 2 156 3.41e-50 157
Msa0570500 MtrunA17_Chr4g0036931 49.032 155 73 3 5 153 2 156 1.24e-49 156
Msa0570500 MtrunA17_Chr7g0251491 54.887 133 56 2 22 153 41 170 2.24e-47 151
Msa0570500 MtrunA17_Chr5g0422891 44.295 149 80 2 5 153 2 147 5.64e-41 134
Msa0570500 MtrunA17_Chr2g0325601 35.333 150 65 6 28 153 1 142 4.35e-22 85.9
Msa0570500 MtrunA17_Chr1g0189221 55.882 68 30 0 28 95 52 119 1.48e-21 85.5
Msa0570500 MtrunA17_Chr1g0191671 52.778 72 34 0 22 93 3 74 1.25e-16 75.9
Msa0570500 MtrunA17_Chr6g0471231 36.496 137 72 5 31 153 5 140 1.41e-16 71.6
Msa0570500 MtrunA17_Chr6g0460361 40.367 109 55 4 54 153 3 110 5.40e-16 69.3
Msa0570500 MtrunA17_Chr1g0208301 50.746 67 33 0 27 93 11 77 4.28e-15 71.2
Msa0570500 MtrunA17_Chr2g0287751 45.833 72 39 0 22 93 3 74 2.64e-14 68.9
Msa0570500 MtrunA17_Chr1g0198341 50.769 65 32 0 29 93 4 68 5.65e-14 63.2
Msa0570500 MtrunA17_Chr7g0269081 47.692 65 34 0 29 93 22 86 9.37e-14 67.0
Msa0570500 MtrunA17_Chr7g0218981 47.692 65 34 0 29 93 4 68 9.77e-14 63.9
Msa0570500 MtrunA17_Chr4g0065651 46.269 67 36 0 27 93 8 74 1.45e-13 67.0
Msa0570500 MtrunA17_Chr7g0272571 50.000 62 31 0 33 94 37 98 1.69e-13 66.6
Msa0570500 MtrunA17_Chr0c22g0493881 46.269 67 36 0 27 93 8 74 2.96e-13 65.9
Msa0570500 MtrunA17_Chr1g0192131 47.761 67 34 1 29 94 15 81 3.96e-13 65.5
Msa0570500 MtrunA17_Chr3g0111541 46.875 64 34 0 29 92 12 75 4.37e-13 63.9
Msa0570500 MtrunA17_Chr4g0065621 46.269 67 36 0 27 93 8 74 4.66e-13 65.5
Msa0570500 MtrunA17_Chr4g0050451 37.647 85 50 2 28 112 1 82 8.73e-13 60.5
Msa0570500 MtrunA17_Chr3g0094841 37.500 128 73 5 28 153 115 237 2.64e-12 62.4
Msa0570500 MtrunA17_Chr4g0067291 46.970 66 35 0 29 94 74 139 3.53e-11 60.1
Msa0570500 MtrunA17_Chr5g0429121 44.776 67 37 0 27 93 15 81 9.36e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570500 AT4G39700.1 68.354 158 45 3 1 153 1 158 5.54e-69 206
Msa0570500 AT1G22990.1 54.545 154 62 4 5 153 2 152 8.44e-56 172
Msa0570500 AT4G08570.1 55.844 154 63 3 1 153 1 150 1.67e-54 169
Msa0570500 AT1G71050.1 53.642 151 68 1 5 153 2 152 1.36e-53 166
Msa0570500 AT1G22990.2 54.000 150 64 4 5 153 2 147 3.36e-53 165
Msa0570500 AT4G38580.1 50.980 153 70 3 5 153 2 153 3.00e-52 163
Msa0570500 AT4G38580.2 50.980 153 70 3 5 153 2 153 3.00e-52 163
Msa0570500 AT5G17450.1 49.333 150 73 2 5 153 2 149 1.52e-47 151
Msa0570500 AT5G66110.3 48.649 148 69 3 10 153 3 147 6.90e-47 149
Msa0570500 AT5G66110.1 48.649 148 69 3 10 153 3 147 6.90e-47 149
Msa0570500 AT4G35060.1 44.444 153 80 3 5 153 2 153 2.16e-41 135
Msa0570500 AT5G66110.2 50.413 121 56 2 37 153 1 121 5.57e-40 131
Msa0570500 AT5G17450.2 53.465 101 44 2 54 153 7 105 2.52e-31 108
Msa0570500 AT1G06330.1 37.908 153 65 5 28 153 1 150 6.80e-25 94.0
Msa0570500 AT2G18196.1 37.671 146 81 5 18 153 33 178 3.26e-24 92.8
Msa0570500 AT4G10465.1 40.714 140 75 4 22 153 44 183 9.76e-23 89.0
Msa0570500 AT3G56891.1 36.601 153 69 4 28 153 15 166 3.30e-22 87.4
Msa0570500 AT3G56891.2 35.417 144 65 4 37 153 1 143 1.30e-19 80.1
Msa0570500 AT2G18196.2 36.000 125 72 4 37 153 1 125 4.80e-19 78.2
Msa0570500 AT1G29100.2 35.135 148 66 5 31 153 5 147 7.56e-18 75.5
Msa0570500 AT1G29100.1 34.247 146 66 5 33 153 1 141 1.64e-16 72.0
Msa0570500 AT3G06130.1 47.222 72 38 0 22 93 3 74 3.23e-14 69.3
Msa0570500 AT5G37860.1 40.000 90 51 1 28 114 9 98 6.72e-14 67.4
Msa0570500 AT3G06130.2 49.254 67 34 0 27 93 8 74 7.69e-14 67.8
Msa0570500 AT3G48970.1 38.686 137 71 5 30 153 4 140 7.85e-14 65.1
Msa0570500 AT3G48970.2 38.686 137 71 5 30 153 2 138 8.91e-14 64.7
Msa0570500 AT3G48970.3 38.686 137 71 5 30 153 2 138 8.91e-14 64.7
Msa0570500 AT5G27690.1 46.774 62 33 0 33 94 34 95 1.84e-13 66.6
Msa0570500 AT1G56210.1 46.667 75 40 0 33 107 44 118 1.95e-13 66.6
Msa0570500 AT1G66240.1 47.692 65 34 0 29 93 33 97 2.03e-13 62.8
Msa0570500 AT3G56240.3 48.485 66 34 0 29 94 3 68 4.36e-13 62.4
Msa0570500 AT3G56240.1 48.485 66 34 0 29 94 3 68 4.36e-13 62.4
Msa0570500 AT5G19090.5 45.833 72 39 0 22 93 3 74 5.14e-13 65.9
Msa0570500 AT5G19090.4 45.833 72 39 0 22 93 3 74 5.14e-13 65.9
Msa0570500 AT5G19090.1 45.833 72 39 0 22 93 3 74 5.14e-13 65.9
Msa0570500 AT5G19090.2 45.833 72 39 0 22 93 3 74 5.69e-13 65.5
Msa0570500 AT5G19090.3 45.833 72 39 0 22 93 3 74 5.69e-13 65.5
Msa0570500 AT1G23000.1 45.070 71 39 0 27 97 11 81 6.63e-13 65.1
Msa0570500 AT1G23000.2 45.070 71 39 0 27 97 71 141 7.25e-13 65.1
Msa0570500 AT3G05220.1 47.761 67 35 0 27 93 8 74 1.50e-11 61.6

Find 46 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCTTACCTTGTAATTA+TGG 0.172033 4_1:+72629418 None:intergenic
TACATGATAGAACATGCATT+TGG 0.333354 4_1:+72625477 None:intergenic
CAGGGAAGAAAGCTGAAATT+TGG 0.367304 4_1:-72625659 Msa0570500:CDS
CTGAAGAAGGCTAAGTCAAC+AGG 0.388802 4_1:-72625678 Msa0570500:CDS
CTTGTCATGGTTCCAGTGGC+TGG 0.390737 4_1:+72625540 None:intergenic
CTGTGATGGCTGTGAGCTTA+AGG 0.395228 4_1:-72625900 Msa0570500:CDS
TGTAAAGAGCTTCTTTACTT+TGG 0.412353 4_1:+72629485 None:intergenic
AGTGACAGTAACTGGGTTTG+TGG 0.423511 4_1:-72625715 Msa0570500:CDS
ACATGATAGAACATGCATTT+GGG 0.432872 4_1:+72625478 None:intergenic
ACCAAGTTGTATGGCACATA+AGG 0.433226 4_1:+72625636 None:intergenic
TCACTGAACATGTTGACATA+AGG 0.444110 4_1:+72625507 None:intergenic
CACTGAACATGTTGACATAA+GGG 0.445263 4_1:+72625508 None:intergenic
TGTGGAGCTAAAGGTTAGAA+TGG 0.454276 4_1:-72625924 Msa0570500:CDS
TCTTCTTCTTCTTGAGGTGG+TGG 0.456850 4_1:+72625960 None:intergenic
GCCTCTTCTTCTTCTTGAGG+TGG 0.468481 4_1:+72625957 None:intergenic
TATACAGAAATGGGAGTTAG+TGG 0.487766 4_1:-72626022 Msa0570500:intron
AATGGGAGTTAGTGGCACTT+TGG 0.488650 4_1:-72626014 Msa0570500:CDS
AAAACTCTTTCTTCACTAAG+TGG 0.490262 4_1:-72625872 Msa0570500:intron
GGTTGAGCCACCAAGTTGTA+TGG 0.490787 4_1:+72625627 None:intergenic
ACTGCCTCTTCTTCTTCTTG+AGG 0.491895 4_1:+72625954 None:intergenic
TGGTTTGAGCTCGTATGCAC+AGG 0.505926 4_1:+72629505 None:intergenic
GTGGAGAATGCTCCAGCCAC+TGG 0.508052 4_1:-72625552 Msa0570500:CDS
TCATAAGAAGAAACAGCATA+TGG 0.511094 4_1:+72625606 None:intergenic
GTTACAAACTGTGGAGCTAA+AGG 0.521890 4_1:-72625933 Msa0570500:CDS
GCCTTATGTGCCATACAACT+TGG 0.527251 4_1:-72625637 Msa0570500:CDS
TTAAGAAAAGTCCATAATGT+AGG 0.527919 4_1:+72625330 None:intergenic
TTCAAACAAGGTGCTGAAGA+AGG 0.528858 4_1:-72625691 Msa0570500:CDS
TTATGTGCCATACAACTTGG+TGG 0.531787 4_1:-72625634 Msa0570500:CDS
ATTATTTATCCATAATTACA+AGG 0.540357 4_1:-72629427 Msa0570500:intron
ACCACCTCAAGAAGAAGAAG+AGG 0.548807 4_1:-72625958 Msa0570500:CDS
ATATCTTGTCATGGTTCCAG+TGG 0.557252 4_1:+72625536 None:intergenic
TCCACTCTCCTCACATAACC+AGG 0.557368 4_1:+72625570 None:intergenic
CTGTTTCTTCTTATGACAAG+AGG 0.561769 4_1:-72625599 Msa0570500:CDS
AGGGTCTTCATATCTTGTCA+TGG 0.576931 4_1:+72625527 None:intergenic
GAAGAGGCAGTTACAAACTG+TGG 0.579662 4_1:-72625942 Msa0570500:CDS
TGTTTCTTCTTATGACAAGA+GGG 0.580345 4_1:-72625598 Msa0570500:CDS
TATGACAAGAGGGCTCCTCC+TGG 0.583575 4_1:-72625588 Msa0570500:CDS
GATTGCAGGGGTACAATCAG+TGG 0.611828 4_1:-72625760 Msa0570500:intron
TCCTGGTTATGTGAGGAGAG+TGG 0.613631 4_1:-72625571 Msa0570500:CDS
GCCTCTATCTATAAGTAGGT+AGG 0.615066 4_1:-72629528 None:intergenic
TGGGTTTGTGGATTCAAACA+AGG 0.634817 4_1:-72625703 Msa0570500:CDS
TTGTCTGATCTAGTGAGCAG+TGG 0.656529 4_1:-72625986 Msa0570500:CDS
GGGCTCCTCCTGGTTATGTG+AGG 0.665943 4_1:-72625578 Msa0570500:CDS
AAGGTTAGAATGGACTGTGA+TGG 0.679131 4_1:-72625914 Msa0570500:CDS
TGAAGAAGGCTAAGTCAACA+GGG 0.687731 4_1:-72625677 Msa0570500:CDS
ACTCTCCTCACATAACCAGG+AGG 0.754338 4_1:+72625573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGATTTTTTTTTTTTTTTT+GGG + chr4_1:72626073-72626092 None:intergenic 10.0%
!!! TGTGATTTTTTTTTTTTTTT+TGG + chr4_1:72626074-72626093 None:intergenic 10.0%
!! ATTATTTATCCATAATTACA+AGG - chr4_1:72625386-72625405 Msa0570500:three_prime_UTR 15.0%
!!! ATTTTGTCTTAAATTTATAG+AGG + chr4_1:72625491-72625510 None:intergenic 15.0%
!! AAATACAAATGATAATTCTA+TGG + chr4_1:72625850-72625869 None:intergenic 15.0%
!! AAATACAAATGATAATTCTA+TGG + chr4_1:72625850-72625869 None:intergenic 15.0%
!! AAATACAAATGATAATTCTA+TGG + chr4_1:72625850-72625869 None:intergenic 15.0%
!! TAAAGAAGTTCTATATAAAT+TGG - chr4_1:72628708-72628727 Msa0570500:intron 15.0%
!!! AACTTTCTTTCTGAAAAAAA+TGG + chr4_1:72625424-72625443 None:intergenic 20.0%
!!! TAGAGGTGTATTTTTTTATT+GGG + chr4_1:72625474-72625493 None:intergenic 20.0%
!!! ATAGAGGTGTATTTTTTTAT+TGG + chr4_1:72625475-72625494 None:intergenic 20.0%
!! GAGATTATTGCATAATAATA+AGG + chr4_1:72625820-72625839 None:intergenic 20.0%
!! ATGATAATTCTATGGTATTT+GGG + chr4_1:72625842-72625861 None:intergenic 20.0%
!! AATGATAATTCTATGGTATT+TGG + chr4_1:72625843-72625862 None:intergenic 20.0%
!! GAGATTATTGCATAATAATA+AGG + chr4_1:72625820-72625839 None:intergenic 20.0%
!! ATGATAATTCTATGGTATTT+GGG + chr4_1:72625842-72625861 None:intergenic 20.0%
!! AATGATAATTCTATGGTATT+TGG + chr4_1:72625843-72625862 None:intergenic 20.0%
!! TACCAAACAAAAAATAACTT+GGG + chr4_1:72627080-72627099 None:intergenic 20.0%
!! ATACCAAACAAAAAATAACT+TGG + chr4_1:72627081-72627100 None:intergenic 20.0%
!!! AAGTTATTTTTTGTTTGGTA+TGG - chr4_1:72627080-72627099 Msa0570500:intron 20.0%
!!! TCTATGTTTTATGCTATTTT+TGG + chr4_1:72627350-72627369 None:intergenic 20.0%
!!! ATTTTTCAATTAGATCAAAC+AGG - chr4_1:72627511-72627530 Msa0570500:intron 20.0%
!! GAGATTATTGCATAATAATA+AGG + chr4_1:72625820-72625839 None:intergenic 20.0%
!! ATGATAATTCTATGGTATTT+GGG + chr4_1:72625842-72625861 None:intergenic 20.0%
!! AATGATAATTCTATGGTATT+TGG + chr4_1:72625843-72625862 None:intergenic 20.0%
!! CTGTATATTCAAAAGTAAAA+TGG + chr4_1:72628778-72628797 None:intergenic 20.0%
!!! TACTTTTGAATATACAGAAA+TGG - chr4_1:72628781-72628800 Msa0570500:intron 20.0%
!!! ACTTTTGAATATACAGAAAT+GGG - chr4_1:72628782-72628801 Msa0570500:intron 20.0%
!!! TTTTTCTAGTTTACTTTTTC+TGG - chr4_1:72629438-72629457 Msa0570500:five_prime_UTR 20.0%
! TTATCCATAATTACAAGGTA+AGG - chr4_1:72625391-72625410 Msa0570500:three_prime_UTR 25.0%
!! ATTTTATAACTTATGCCCTT+AGG + chr4_1:72625557-72625576 None:intergenic 25.0%
! GATTATAAATAAAGATGCAG+AGG - chr4_1:72625666-72625685 Msa0570500:CDS 25.0%
! ATAAGAAAGTAATTGCAGAA+AGG + chr4_1:72625770-72625789 None:intergenic 25.0%
! ATAAGAAAGTAATTGCAGAA+AGG + chr4_1:72625770-72625789 None:intergenic 25.0%
! TTTCTCTATGATCCAAATAT+TGG + chr4_1:72626210-72626229 None:intergenic 25.0%
!! TGGTATCTCTTTTAATCTAA+TGG - chr4_1:72627048-72627067 Msa0570500:intron 25.0%
!!! TATTTTTTGTTTGGTATGGA+AGG - chr4_1:72627084-72627103 Msa0570500:intron 25.0%
! TTCAATTTAATGATAGCCAT+TGG - chr4_1:72627146-72627165 Msa0570500:intron 25.0%
! TCAATTTAATGATAGCCATT+GGG - chr4_1:72627147-72627166 Msa0570500:intron 25.0%
! ACAAAACAATTCTAGTAAGT+GGG - chr4_1:72627282-72627301 Msa0570500:intron 25.0%
!!! TTTATGCTATTTTTGGAATC+TGG + chr4_1:72627343-72627362 None:intergenic 25.0%
!! AAACCTTTTCAAACAATCAT+TGG - chr4_1:72627405-72627424 Msa0570500:intron 25.0%
! ATAAAGATGCTATTGATGAA+GGG - chr4_1:72627445-72627464 Msa0570500:intron 25.0%
! ATCTCAATATTAAGAGTAGA+TGG + chr4_1:72627712-72627731 None:intergenic 25.0%
! TAATATTGAGATCTCTTCAA+TGG - chr4_1:72627720-72627739 Msa0570500:intron 25.0%
! ATTGTTCATGTTCAATTACT+TGG - chr4_1:72628032-72628051 Msa0570500:intron 25.0%
! TTGTTCATGTTCAATTACTT+GGG - chr4_1:72628033-72628052 Msa0570500:intron 25.0%
!! ATTTTATAACTTATGCCCTT+AGG + chr4_1:72625557-72625576 None:intergenic 25.0%
! GATTATAAATAAAGATGCAG+AGG - chr4_1:72625666-72625685 Msa0570500:CDS 25.0%
! ATAAGAAAGTAATTGCAGAA+AGG + chr4_1:72625770-72625789 None:intergenic 25.0%
! AACTCAAGTAGATTCAAAAA+GGG + chr4_1:72628653-72628672 None:intergenic 25.0%
! TAACTCAAGTAGATTCAAAA+AGG + chr4_1:72628654-72628673 None:intergenic 25.0%
! AAGTAAAATGGTTACTGAAA+TGG + chr4_1:72628766-72628785 None:intergenic 25.0%
!!! GTTTTTTTTCTTTCTAAGCT+TGG - chr4_1:72629371-72629390 Msa0570500:intron 25.0%
! TTAAGAAAAGTCCATAATGT+AGG + chr4_1:72629486-72629505 None:intergenic 25.0%
!! GACTTTTCTTAACATGAAAA+AGG - chr4_1:72629494-72629513 Msa0570500:five_prime_UTR 25.0%
TGTAAAGAGCTTCTTTACTT+TGG + chr4_1:72625331-72625350 None:intergenic 30.0%
AAATAAAGATGCAGAGGAAA+AGG - chr4_1:72625672-72625691 Msa0570500:CDS 30.0%
AATAAAGATGCAGAGGAAAA+GGG - chr4_1:72625673-72625692 Msa0570500:CDS 30.0%
!!! AGACTGATTCCTATTTTTGA+TGG - chr4_1:72626134-72626153 Msa0570500:intron 30.0%
!!! GATTCCTATTTTTGATGGAA+AGG - chr4_1:72626139-72626158 Msa0570500:intron 30.0%
TCTTCCTTTCCATCAAAAAT+AGG + chr4_1:72626146-72626165 None:intergenic 30.0%
TTGGATCATAGAGAAAATGA+AGG - chr4_1:72626214-72626233 Msa0570500:intron 30.0%
AGAAAACTATGAAGAGTCAA+AGG - chr4_1:72626436-72626455 Msa0570500:intron 30.0%
ATGTGCTGAGTATTAATTGT+TGG + chr4_1:72626860-72626879 None:intergenic 30.0%
!!! GACCCAAGTTATTTTTTGTT+TGG - chr4_1:72627075-72627094 Msa0570500:intron 30.0%
!! TATGGAAGGTATTAGAAATG+TGG - chr4_1:72627098-72627117 Msa0570500:intron 30.0%
GATCTAACAATAAACCTAGT+GGG - chr4_1:72627253-72627272 Msa0570500:intron 30.0%
CACAAAACAATTCTAGTAAG+TGG - chr4_1:72627281-72627300 Msa0570500:intron 30.0%
ATAAAACATAGACAACCCTA+TGG - chr4_1:72627358-72627377 Msa0570500:intron 30.0%
ACCTCTAAATTACAACCATA+GGG + chr4_1:72627376-72627395 None:intergenic 30.0%
AACCTCTAAATTACAACCAT+AGG + chr4_1:72627377-72627396 None:intergenic 30.0%
TCACCAATGATTGTTTGAAA+AGG + chr4_1:72627411-72627430 None:intergenic 30.0%
AATAGCATCTTTATGACTGA+AGG + chr4_1:72627439-72627458 None:intergenic 30.0%
CATAAAGATGCTATTGATGA+AGG - chr4_1:72627444-72627463 Msa0570500:intron 30.0%
TAAAGATGCTATTGATGAAG+GGG - chr4_1:72627446-72627465 Msa0570500:intron 30.0%
ACTTATCAGCAATCAGATAT+GGG + chr4_1:72627564-72627583 None:intergenic 30.0%
AACTTATCAGCAATCAGATA+TGG + chr4_1:72627565-72627584 None:intergenic 30.0%
GATAAGTTTATCCAAGTGAA+AGG - chr4_1:72627577-72627596 Msa0570500:intron 30.0%
AGTTACTAAGTACAACAAAG+TGG - chr4_1:72627606-72627625 Msa0570500:intron 30.0%
! TAATTCTTTTTATGAGCAGG+AGG - chr4_1:72627656-72627675 Msa0570500:intron 30.0%
!! GCTTTGATTGATGATGTATT+AGG - chr4_1:72627751-72627770 Msa0570500:intron 30.0%
TAATGTATTTCACATGCCAA+GGG + chr4_1:72627777-72627796 None:intergenic 30.0%
! TTTTGCCAACCAATTACAAT+GGG - chr4_1:72627803-72627822 Msa0570500:intron 30.0%
!! TTTTGGGGAATTCATTTATC+AGG - chr4_1:72627936-72627955 Msa0570500:intron 30.0%
TTATGTTATCATTCACCTTG+AGG - chr4_1:72628216-72628235 Msa0570500:intron 30.0%
AAATAAAGATGCAGAGGAAA+AGG - chr4_1:72625672-72625691 Msa0570500:CDS 30.0%
AATAAAGATGCAGAGGAAAA+GGG - chr4_1:72625673-72625692 Msa0570500:CDS 30.0%
! TTTTTATGAGAGTTGTACAG+GGG + chr4_1:72628630-72628649 None:intergenic 30.0%
! GTTTTTATGAGAGTTGTACA+GGG + chr4_1:72628631-72628650 None:intergenic 30.0%
CTCAAACAAGACAAAACTAT+AGG + chr4_1:72628684-72628703 None:intergenic 30.0%
AAAACTCTTTCTTCACTAAG+TGG - chr4_1:72628941-72628960 Msa0570500:intron 30.0%
CTTCATGTTGAAAATGTTAC+AGG + chr4_1:72629015-72629034 None:intergenic 30.0%
ATGAAGTTGCTGAAATGAAA+TGG - chr4_1:72629029-72629048 Msa0570500:intron 30.0%
TCATAAGAAGAAACAGCATA+TGG + chr4_1:72629210-72629229 None:intergenic 30.0%
TGTTTCTTCTTATGACAAGA+GGG - chr4_1:72629215-72629234 Msa0570500:intron 30.0%
ACATGATAGAACATGCATTT+GGG + chr4_1:72629338-72629357 None:intergenic 30.0%
TACATGATAGAACATGCATT+TGG + chr4_1:72629339-72629358 None:intergenic 30.0%
!!! TCTTGTGAAGAGCTGTTTTT+GGG + chr4_1:72625361-72625380 None:intergenic 35.0%
CCTTCCTTACCTTGTAATTA+TGG + chr4_1:72625398-72625417 None:intergenic 35.0%
CCATAATTACAAGGTAAGGA+AGG - chr4_1:72625395-72625414 Msa0570500:three_prime_UTR 35.0%
TAGGAGTCCTATATCTAACA+GGG + chr4_1:72625538-72625557 None:intergenic 35.0%
TTAGGAGTCCTATATCTAAC+AGG + chr4_1:72625539-72625558 None:intergenic 35.0%
TGTTAGATATAGGACTCCTA+AGG - chr4_1:72625538-72625557 Msa0570500:CDS 35.0%
GTTAGATATAGGACTCCTAA+GGG - chr4_1:72625539-72625558 Msa0570500:CDS 35.0%
TGTAACTGCTATAGTGAGTT+AGG - chr4_1:72625644-72625663 Msa0570500:CDS 35.0%
! GCATTGGGTATTTTGTATGT+GGG - chr4_1:72625699-72625718 Msa0570500:CDS 35.0%
!!! ATTTTGTATGTGGGTTGGTT+TGG - chr4_1:72625708-72625727 Msa0570500:CDS 35.0%
!!! TTTTGTATGTGGGTTGGTTT+GGG - chr4_1:72625709-72625728 Msa0570500:CDS 35.0%
TACATATCTGAACCAGTATC+TGG - chr4_1:72625871-72625890 Msa0570500:intron 35.0%
GGTGGATGATCTAGTTAAAA+CGG - chr4_1:72626174-72626193 Msa0570500:intron 35.0%
!! GGTACTTTGAAGCCAATATT+TGG - chr4_1:72626195-72626214 Msa0570500:intron 35.0%
TCTCATTCAGAATGTACTCA+TGG + chr4_1:72626412-72626431 None:intergenic 35.0%
AAACTATGAAGAGTCAAAGG+AGG - chr4_1:72626439-72626458 Msa0570500:intron 35.0%
GATAACAGGGTCAATTGTTA+AGG - chr4_1:72627024-72627043 Msa0570500:intron 35.0%
! AAGGTATTAGAAATGTGGAC+AGG - chr4_1:72627103-72627122 Msa0570500:intron 35.0%
AGGAATAGAGTTACTAGGTT+CGG - chr4_1:72627123-72627142 Msa0570500:intron 35.0%
TAGCCATTGGGTTATGATAA+AGG - chr4_1:72627159-72627178 Msa0570500:intron 35.0%
AGCCATTGGGTTATGATAAA+GGG - chr4_1:72627160-72627179 Msa0570500:intron 35.0%
AGTAGATGATACAAACCAGA+AGG - chr4_1:72627192-72627211 Msa0570500:intron 35.0%
GGATCTAACAATAAACCTAG+TGG - chr4_1:72627252-72627271 Msa0570500:intron 35.0%
AGTGGGTGAGAGAAATTAAA+AGG - chr4_1:72627299-72627318 Msa0570500:intron 35.0%
ACCCTATGGTTGTAATTTAG+AGG - chr4_1:72627372-72627391 Msa0570500:intron 35.0%
TTTATCCAAGTGAAAGGTGA+AGG - chr4_1:72627583-72627602 Msa0570500:intron 35.0%
! GCGTAATTCTTTTTATGAGC+AGG - chr4_1:72627653-72627672 Msa0570500:intron 35.0%
TATTGAGATCTCTTCAATGG+TGG - chr4_1:72627723-72627742 Msa0570500:intron 35.0%
CTAATGTATTTCACATGCCA+AGG + chr4_1:72627778-72627797 None:intergenic 35.0%
! CTTTTGCCAACCAATTACAA+TGG - chr4_1:72627802-72627821 Msa0570500:intron 35.0%
AATTCCACTCCCATTGTAAT+TGG + chr4_1:72627815-72627834 None:intergenic 35.0%
ATGACTCGATCACTTGAAAT+GGG - chr4_1:72627841-72627860 Msa0570500:intron 35.0%
! TACAGCACAATGAGAGTTTT+TGG - chr4_1:72627919-72627938 Msa0570500:intron 35.0%
! ACAGCACAATGAGAGTTTTT+GGG - chr4_1:72627920-72627939 Msa0570500:intron 35.0%
! TGTCACTCTACTTCAAGTTA+TGG - chr4_1:72628178-72628197 Msa0570500:intron 35.0%
! GTCACTCTACTTCAAGTTAT+GGG - chr4_1:72628179-72628198 Msa0570500:intron 35.0%
TGTTAGATATAGGACTCCTA+AGG - chr4_1:72625538-72625557 Msa0570500:CDS 35.0%
GTTAGATATAGGACTCCTAA+GGG - chr4_1:72625539-72625558 Msa0570500:CDS 35.0%
TGTAACTGCTATAGTGAGTT+AGG - chr4_1:72625644-72625663 Msa0570500:CDS 35.0%
! GCATTGGGTATTTTGTATGT+GGG - chr4_1:72625699-72625718 Msa0570500:CDS 35.0%
!!! ATTTTGTATGTGGGTTGGTT+TGG - chr4_1:72625708-72625727 Msa0570500:CDS 35.0%
!!! TTTTGTATGTGGGTTGGTTT+GGG - chr4_1:72625709-72625728 Msa0570500:CDS 35.0%
! GGTTTTTATGAGAGTTGTAC+AGG + chr4_1:72628632-72628651 None:intergenic 35.0%
TATACAGAAATGGGAGTTAG+TGG - chr4_1:72628791-72628810 Msa0570500:intron 35.0%
TGAAATGAAATGGTGATTGC+AGG - chr4_1:72629039-72629058 Msa0570500:intron 35.0%
GAAATGAAATGGTGATTGCA+GGG - chr4_1:72629040-72629059 Msa0570500:intron 35.0%
AAATGAAATGGTGATTGCAG+GGG - chr4_1:72629041-72629060 Msa0570500:intron 35.0%
AGCAAAAAGTGACAGTAACT+GGG - chr4_1:72629091-72629110 Msa0570500:intron 35.0%
! CTGTTTCTTCTTATGACAAG+AGG - chr4_1:72629214-72629233 Msa0570500:intron 35.0%
CACTGAACATGTTGACATAA+GGG + chr4_1:72629308-72629327 None:intergenic 35.0%
TCACTGAACATGTTGACATA+AGG + chr4_1:72629309-72629328 None:intergenic 35.0%
!!! GCTCTTGTTTTCCTACATTA+TGG - chr4_1:72629472-72629491 Msa0570500:five_prime_UTR 35.0%
!! CTCTTGTGAAGAGCTGTTTT+TGG + chr4_1:72625362-72625381 None:intergenic 40.0%
CTGAAACAGAACATGCTACA+AGG + chr4_1:72625447-72625466 None:intergenic 40.0%
ACATGCTCCCTGTTAGATAT+AGG - chr4_1:72625528-72625547 Msa0570500:CDS 40.0%
!! GGCATTGGGTATTTTGTATG+TGG - chr4_1:72625698-72625717 Msa0570500:CDS 40.0%
! TGGGTATTTTGTATGTGGGT+TGG - chr4_1:72625703-72625722 Msa0570500:CDS 40.0%
TCTGAACCAGTATCTAACAC+TGG - chr4_1:72626029-72626048 Msa0570500:intron 40.0%
CTGATACCAGTGTTAGATAC+TGG + chr4_1:72626038-72626057 None:intergenic 40.0%
TAACTAGATCATCCACCAGT+AGG + chr4_1:72626171-72626190 None:intergenic 40.0%
TAGAGAAAATGAAGGTCGAC+TGG - chr4_1:72626222-72626241 Msa0570500:intron 40.0%
AGAGAAAATGAAGGTCGACT+GGG - chr4_1:72626223-72626242 Msa0570500:intron 40.0%
GTTACTCTGTATGCTTTCAG+AGG - chr4_1:72626245-72626264 Msa0570500:intron 40.0%
!! CTTCCAATTGGTGGTCTTAT+TGG - chr4_1:72626273-72626292 Msa0570500:intron 40.0%
CTTCCAATAAGACCACCAAT+TGG + chr4_1:72626279-72626298 None:intergenic 40.0%
!! TTGGTGGTCTTATTGGAAGA+AGG - chr4_1:72626280-72626299 Msa0570500:intron 40.0%
!! TGGTGGTCTTATTGGAAGAA+GGG - chr4_1:72626281-72626300 Msa0570500:intron 40.0%
!! ACGTGGAAGGTATTTGAAAG+AGG - chr4_1:72626317-72626336 Msa0570500:intron 40.0%
AGAAATTCATCCCAGACCTA+TGG - chr4_1:72626348-72626367 Msa0570500:intron 40.0%
GAAATTCATCCCAGACCTAT+GGG - chr4_1:72626349-72626368 Msa0570500:intron 40.0%
TATGAAGAGTCAAAGGAGGT+TGG - chr4_1:72626443-72626462 Msa0570500:intron 40.0%
TGTACCATGCATTCTGTGAA+TGG + chr4_1:72626554-72626573 None:intergenic 40.0%
TGCATGGTACAAAAATCTGC+AGG - chr4_1:72626563-72626582 Msa0570500:intron 40.0%
TGAGACACAAAGATGTGAGA+AGG - chr4_1:72626634-72626653 Msa0570500:intron 40.0%
AAAGATGTGAGAAGGAGAGA+AGG - chr4_1:72626642-72626661 Msa0570500:intron 40.0%
TCTCTTGTTGCATCTGAAGA+CGG + chr4_1:72626806-72626825 None:intergenic 40.0%
TGTGAGGTCAAAAGGATAAC+AGG - chr4_1:72627010-72627029 Msa0570500:intron 40.0%
GTGAGGTCAAAAGGATAACA+GGG - chr4_1:72627011-72627030 Msa0570500:intron 40.0%
ACAGGGTCAATTGTTAAGGT+TGG - chr4_1:72627028-72627047 Msa0570500:intron 40.0%
TGGACAGGAATAGAGTTACT+AGG - chr4_1:72627118-72627137 Msa0570500:intron 40.0%
GCCATTGGGTTATGATAAAG+GGG - chr4_1:72627161-72627180 Msa0570500:intron 40.0%
CCATTGGGTTATGATAAAGG+GGG - chr4_1:72627162-72627181 Msa0570500:intron 40.0%
AGAAAAGCAGTGGAACAGAT+TGG - chr4_1:72627215-72627234 Msa0570500:intron 40.0%
! AGATTGGTCAGGTTGTATGT+TGG - chr4_1:72627231-72627250 Msa0570500:intron 40.0%
! AACAATAAACCTAGTGGGTC+AGG - chr4_1:72627258-72627277 Msa0570500:intron 40.0%
GGGTGAGAGAAATTAAAAGG+TGG - chr4_1:72627302-72627321 Msa0570500:intron 40.0%
ATTGATGAAGGGGCTCTTAA+AGG - chr4_1:72627456-72627475 Msa0570500:intron 40.0%
CAAACAGGAATTCCATCTCA+AGG - chr4_1:72627526-72627545 Msa0570500:intron 40.0%
GAATTCCATCTCAAGGTCAT+TGG - chr4_1:72627533-72627552 Msa0570500:intron 40.0%
TAACTCCTTCACCTTTCACT+TGG + chr4_1:72627591-72627610 None:intergenic 40.0%
! TTTTATGAGCAGGAGGAACA+TGG - chr4_1:72627663-72627682 Msa0570500:intron 40.0%
!! TTGATGATGTATTAGGCCCT+TGG - chr4_1:72627758-72627777 Msa0570500:intron 40.0%
GATGACTCGATCACTTGAAA+TGG - chr4_1:72627840-72627859 Msa0570500:intron 40.0%
! CAGCACAATGAGAGTTTTTG+GGG - chr4_1:72627921-72627940 Msa0570500:intron 40.0%
TGTTGCTACAGCACAAAGTA+AGG + chr4_1:72627998-72628017 None:intergenic 40.0%
TCAAGGCTACTCTAGTAGTT+AGG - chr4_1:72628076-72628095 Msa0570500:intron 40.0%
TATCATTCACCTTGAGGACA+AGG - chr4_1:72628222-72628241 Msa0570500:intron 40.0%
AAAGATTCACCTTGTCCTCA+AGG + chr4_1:72628234-72628253 None:intergenic 40.0%
TGAGGACAAGGTGAATCTTT+AGG - chr4_1:72628234-72628253 Msa0570500:intron 40.0%
GAGGACAAGGTGAATCTTTA+GGG - chr4_1:72628235-72628254 Msa0570500:intron 40.0%
AGGACAAGGTGAATCTTTAG+GGG - chr4_1:72628236-72628255 Msa0570500:intron 40.0%
!! GGGGGAGTATTGTTAGATAT+AGG - chr4_1:72628257-72628276 Msa0570500:intron 40.0%
!! GGCATTGGGTATTTTGTATG+TGG - chr4_1:72625698-72625717 Msa0570500:CDS 40.0%
! TGGGTATTTTGTATGTGGGT+TGG - chr4_1:72625703-72625722 Msa0570500:CDS 40.0%
GTTACAAACTGTGGAGCTAA+AGG - chr4_1:72628880-72628899 Msa0570500:intron 40.0%
TGTGGAGCTAAAGGTTAGAA+TGG - chr4_1:72628889-72628908 Msa0570500:intron 40.0%
!! AAGGTTAGAATGGACTGTGA+TGG - chr4_1:72628899-72628918 Msa0570500:intron 40.0%
!!! CTGTCACTTTTTGCTGTTTG+CGG + chr4_1:72629086-72629105 None:intergenic 40.0%
CAGCAAAAAGTGACAGTAAC+TGG - chr4_1:72629090-72629109 Msa0570500:intron 40.0%
TGGGTTTGTGGATTCAAACA+AGG - chr4_1:72629110-72629129 Msa0570500:intron 40.0%
!! TTCAAACAAGGTGCTGAAGA+AGG - chr4_1:72629122-72629141 Msa0570500:intron 40.0%
TGAAGAAGGCTAAGTCAACA+GGG - chr4_1:72629136-72629155 Msa0570500:intron 40.0%
CAGGGAAGAAAGCTGAAATT+TGG - chr4_1:72629154-72629173 Msa0570500:intron 40.0%
ACCAAGTTGTATGGCACATA+AGG + chr4_1:72629180-72629199 None:intergenic 40.0%
TTATGTGCCATACAACTTGG+TGG - chr4_1:72629179-72629198 Msa0570500:intron 40.0%
ATATCTTGTCATGGTTCCAG+TGG + chr4_1:72629280-72629299 None:intergenic 40.0%
AGGGTCTTCATATCTTGTCA+TGG + chr4_1:72629289-72629308 None:intergenic 40.0%
! GCATGTATGTGGTTTGTAGG+TGG + chr4_1:72625514-72625533 None:intergenic 45.0%
! GGAGCATGTATGTGGTTTGT+AGG + chr4_1:72625517-72625536 None:intergenic 45.0%
! TCTAACAGGGAGCATGTATG+TGG + chr4_1:72625525-72625544 None:intergenic 45.0%
AAAGATGCAGAGGAAAAGGG+AGG - chr4_1:72625676-72625695 Msa0570500:CDS 45.0%
AAGATGCAGAGGAAAAGGGA+GGG - chr4_1:72625677-72625696 Msa0570500:CDS 45.0%
CAGAAAGGTAACCAACCTCT+AGG + chr4_1:72625755-72625774 None:intergenic 45.0%
CAGAAAGGTAACCAACCTCT+AGG + chr4_1:72625755-72625774 None:intergenic 45.0%
ATCAGTCTCTCCAACATCAC+TGG + chr4_1:72626122-72626141 None:intergenic 45.0%
ATGGAAAGGAAGATGCCTAC+TGG - chr4_1:72626153-72626172 Msa0570500:intron 45.0%
TCAGAGGAGAAGCTTCCAAT+TGG - chr4_1:72626261-72626280 Msa0570500:intron 45.0%
CAAGCATATCCCATAGGTCT+GGG + chr4_1:72626361-72626380 None:intergenic 45.0%
TCAAGCATATCCCATAGGTC+TGG + chr4_1:72626362-72626381 None:intergenic 45.0%
CAGACTCAAGCATATCCCAT+AGG + chr4_1:72626367-72626386 None:intergenic 45.0%
GATATGCTTGAGTCTGCAGA+AGG - chr4_1:72626371-72626390 Msa0570500:intron 45.0%
!! AGAGTCAAAGGAGGTTGGTA+AGG - chr4_1:72626448-72626467 Msa0570500:intron 45.0%
! GTTGGTAAGGAGACAAACTC+TGG - chr4_1:72626461-72626480 Msa0570500:intron 45.0%
GACACCATTCACAGAATGCA+TGG - chr4_1:72626547-72626566 Msa0570500:intron 45.0%
TGCAGGTCACAATGAATCGA+TGG - chr4_1:72626580-72626599 Msa0570500:intron 45.0%
CTTCAGATGCAACAAGAGAC+AGG - chr4_1:72626807-72626826 Msa0570500:intron 45.0%
GCAACACACTTGCAACTGAA+CGG - chr4_1:72626954-72626973 Msa0570500:intron 45.0%
TGTTTCAACGTCGCTTCAGT+TGG - chr4_1:72626980-72626999 Msa0570500:intron 45.0%
GTTTCAACGTCGCTTCAGTT+GGG - chr4_1:72626981-72627000 Msa0570500:intron 45.0%
TTCAGTTGGGAAGGATTGTG+AGG - chr4_1:72626994-72627013 Msa0570500:intron 45.0%
GGAAGGATTGTGAGGTCAAA+AGG - chr4_1:72627002-72627021 Msa0570500:intron 45.0%
CCCCCTTTATCATAACCCAA+TGG + chr4_1:72627165-72627184 None:intergenic 45.0%
TTGGGTTATGATAAAGGGGG+TGG - chr4_1:72627165-72627184 Msa0570500:intron 45.0%
AACCAGAAGGAGAAAAGCAG+TGG - chr4_1:72627205-72627224 Msa0570500:intron 45.0%
!! TTCCACTGCTTTTCTCCTTC+TGG + chr4_1:72627210-72627229 None:intergenic 45.0%
GAGGAACATGGAAGTGGAAA+GGG - chr4_1:72627675-72627694 Msa0570500:intron 45.0%
! GATCTCTTCAATGGTGGTGA+TGG - chr4_1:72627729-72627748 Msa0570500:intron 45.0%
CCACTCCCATTGTAATTGGT+TGG + chr4_1:72627811-72627830 None:intergenic 45.0%
CCAACCAATTACAATGGGAG+TGG - chr4_1:72627808-72627827 Msa0570500:intron 45.0%
ACAATGGGAGTGGAATTGTG+TGG - chr4_1:72627818-72627837 Msa0570500:intron 45.0%
AAAACCGAGTCATTTCCTCC+AGG + chr4_1:72627892-72627911 None:intergenic 45.0%
TAAGGCGACAACTAGGACAA+TGG + chr4_1:72627980-72627999 None:intergenic 45.0%
CACAAAGTAAGGCGACAACT+AGG + chr4_1:72627987-72628006 None:intergenic 45.0%
CATGCAAGCTACTTGTGTCA+AGG - chr4_1:72628059-72628078 Msa0570500:intron 45.0%
CAAGGCTGAGATGAGAGAAT+TGG + chr4_1:72628122-72628141 None:intergenic 45.0%
ATTCTCTCATCTCAGCCTTG+AGG - chr4_1:72628122-72628141 Msa0570500:intron 45.0%
!!! ACGGCTGTTTTTCTACTGGT+CGG - chr4_1:72628147-72628166 Msa0570500:intron 45.0%
! TACTTCAAGTTATGGGACCC+TGG - chr4_1:72628186-72628205 Msa0570500:intron 45.0%
GATAACATAAGTGTCCGCCA+GGG + chr4_1:72628206-72628225 None:intergenic 45.0%
TGATAACATAAGTGTCCGCC+AGG + chr4_1:72628207-72628226 None:intergenic 45.0%
GGACAAGGTGAATCTTTAGG+GGG - chr4_1:72628237-72628256 Msa0570500:intron 45.0%
! GACAAGGTGAATCTTTAGGG+GGG - chr4_1:72628238-72628257 Msa0570500:intron 45.0%
! ACAAGGTGAATCTTTAGGGG+GGG - chr4_1:72628239-72628258 Msa0570500:intron 45.0%
AAAGATGCAGAGGAAAAGGG+AGG - chr4_1:72625676-72625695 Msa0570500:CDS 45.0%
AAGATGCAGAGGAAAAGGGA+GGG - chr4_1:72625677-72625696 Msa0570500:CDS 45.0%
CAGAAAGGTAACCAACCTCT+AGG + chr4_1:72625755-72625774 None:intergenic 45.0%
!! TACAGGGGAGTGTTAGATAC+TGG + chr4_1:72628615-72628634 None:intergenic 45.0%
AATGGGAGTTAGTGGCACTT+TGG - chr4_1:72628799-72628818 Msa0570500:intron 45.0%
TTGTCTGATCTAGTGAGCAG+TGG - chr4_1:72628827-72628846 Msa0570500:intron 45.0%
TCTTCTTCTTCTTGAGGTGG+TGG + chr4_1:72628856-72628875 None:intergenic 45.0%
ACCACCTCAAGAAGAAGAAG+AGG - chr4_1:72628855-72628874 Msa0570500:intron 45.0%
ACTGCCTCTTCTTCTTCTTG+AGG + chr4_1:72628862-72628881 None:intergenic 45.0%
GAAGAGGCAGTTACAAACTG+TGG - chr4_1:72628871-72628890 Msa0570500:intron 45.0%
AGTGACAGTAACTGGGTTTG+TGG - chr4_1:72629098-72629117 Msa0570500:intron 45.0%
CTGAAGAAGGCTAAGTCAAC+AGG - chr4_1:72629135-72629154 Msa0570500:intron 45.0%
GCCTTATGTGCCATACAACT+TGG - chr4_1:72629176-72629195 Msa0570500:intron 45.0%
TGGTTTGAGCTCGTATGCAC+AGG + chr4_1:72625311-72625330 None:intergenic 50.0%
!! AGAGGAAAAGGGAGGGCATT+GGG - chr4_1:72625684-72625703 Msa0570500:CDS 50.0%
CTAGGCTCTCTAACTCCTAG+AGG - chr4_1:72625737-72625756 Msa0570500:CDS 50.0%
GCTCTCTAACTCCTAGAGGT+TGG - chr4_1:72625741-72625760 Msa0570500:CDS 50.0%
GGAGTTAGAGAGCCAGATAC+TGG + chr4_1:72625886-72625905 None:intergenic 50.0%
!! TCTGGCTCTCTAACTCCTAG+AGG - chr4_1:72625889-72625908 Msa0570500:CDS 50.0%
GCTCTCTAACTCCTAGAGGT+TGG - chr4_1:72625741-72625760 Msa0570500:CDS 50.0%
AGAGTGAGAGCCAGTGATGT+TGG - chr4_1:72626109-72626128 Msa0570500:intron 50.0%
GAAAGGAAGATGCCTACTGG+TGG - chr4_1:72626156-72626175 Msa0570500:intron 50.0%
GAGGAGAAGCTTCCAATTGG+TGG - chr4_1:72626264-72626283 Msa0570500:intron 50.0%
CAATCAGAATGCGACGTGGA+AGG - chr4_1:72626304-72626323 Msa0570500:intron 50.0%
! GGATCGCTGCTTAGTTTGAG+CGG - chr4_1:72626482-72626501 Msa0570500:intron 50.0%
AATTCCTGATGTGACCGCTC+TGG + chr4_1:72626521-72626540 None:intergenic 50.0%
GATTGTGATGAAGGCGGATC+TGG + chr4_1:72626701-72626720 None:intergenic 50.0%
GGTGGTGATTGTGATGAAGG+CGG + chr4_1:72626707-72626726 None:intergenic 50.0%
! GGTGGTGGTGATTGTGATGA+AGG + chr4_1:72626710-72626729 None:intergenic 50.0%
TGACTAGAGTCTAGCGACTC+TGG + chr4_1:72626731-72626750 None:intergenic 50.0%
TTTCCCTTCCTCCTTGGATC+GGG + chr4_1:72626834-72626853 None:intergenic 50.0%
CTTTCCCTTCCTCCTTGGAT+CGG + chr4_1:72626835-72626854 None:intergenic 50.0%
!! GCAAGTTGGTTGATGCCAGT+CGG + chr4_1:72626908-72626927 None:intergenic 50.0%
TGGCATCAACCAACTTGCAG+TGG - chr4_1:72626910-72626929 Msa0570500:intron 50.0%
! AGCAGTGGAACAGATTGGTC+AGG - chr4_1:72627220-72627239 Msa0570500:intron 50.0%
! TGTTTTGTGCCTGACCCACT+AGG + chr4_1:72627270-72627289 None:intergenic 50.0%
CTGCTCCAATGACCTTGAGA+TGG + chr4_1:72627541-72627560 None:intergenic 50.0%
GGAGGAACATGGAAGTGGAA+AGG - chr4_1:72627674-72627693 Msa0570500:intron 50.0%
CTTGTCCAGCTCCCATCAAT+GGG - chr4_1:72627864-72627883 Msa0570500:intron 50.0%
TCCTCCAGGATCCCATTGAT+GGG + chr4_1:72627878-72627897 None:intergenic 50.0%
TTCCTCCAGGATCCCATTGA+TGG + chr4_1:72627879-72627898 None:intergenic 50.0%
GGATCCTGGAGGAAATGACT+CGG - chr4_1:72627885-72627904 Msa0570500:intron 50.0%
TCATCTCAGCCTTGAGGACA+CGG - chr4_1:72628128-72628147 Msa0570500:intron 50.0%
GAAAAACAGCCGTGTCCTCA+AGG + chr4_1:72628140-72628159 None:intergenic 50.0%
!!! GGACACGGCTGTTTTTCTAC+TGG - chr4_1:72628143-72628162 Msa0570500:intron 50.0%
! TTCAAGTTATGGGACCCTGG+CGG - chr4_1:72628189-72628208 Msa0570500:intron 50.0%
!! AGAGGAAAAGGGAGGGCATT+GGG - chr4_1:72625684-72625703 Msa0570500:CDS 50.0%
CTAGGCTCTCTAACTCCTAG+AGG - chr4_1:72625737-72625756 Msa0570500:CDS 50.0%
GCTCTCTAACTCCTAGAGGT+TGG - chr4_1:72625741-72625760 Msa0570500:CDS 50.0%
GCCTCTTCTTCTTCTTGAGG+TGG + chr4_1:72628859-72628878 None:intergenic 50.0%
CTGTGATGGCTGTGAGCTTA+AGG - chr4_1:72628913-72628932 Msa0570500:intron 50.0%
! GATTGCAGGGGTACAATCAG+TGG - chr4_1:72629053-72629072 Msa0570500:intron 50.0%
GGTTGAGCCACCAAGTTGTA+TGG + chr4_1:72629189-72629208 None:intergenic 50.0%
ACTCTCCTCACATAACCAGG+AGG + chr4_1:72629243-72629262 None:intergenic 50.0%
TCCTGGTTATGTGAGGAGAG+TGG - chr4_1:72629242-72629261 Msa0570500:intron 50.0%
TCCACTCTCCTCACATAACC+AGG + chr4_1:72629246-72629265 None:intergenic 50.0%
! CAGAGGAAAAGGGAGGGCAT+TGG - chr4_1:72625683-72625702 Msa0570500:CDS 55.0%
!! GGGTTGGTTTGGGAGAGACT+AGG - chr4_1:72625719-72625738 Msa0570500:CDS 55.0%
AGGGCAATCAGAATGCGACG+TGG - chr4_1:72626300-72626319 Msa0570500:intron 55.0%
CTAGAGTCTAGCGACTCTGG+TGG + chr4_1:72626728-72626747 None:intergenic 55.0%
AACCTGCGACCGATCTCCAA+CGG - chr4_1:72626750-72626769 Msa0570500:intron 55.0%
CGGTTCTCTCCGTTGGAGAT+CGG + chr4_1:72626762-72626781 None:intergenic 55.0%
GCATCTGAAGACGGCCAATC+CGG + chr4_1:72626797-72626816 None:intergenic 55.0%
TTCCCTTCCTCCTTGGATCG+GGG + chr4_1:72626833-72626852 None:intergenic 55.0%
TGGCTCTTTCCCTTCCTCCT+TGG + chr4_1:72626840-72626859 None:intergenic 55.0%
ACATACCACCGCCGCTGAAA+TGG - chr4_1:72626876-72626895 Msa0570500:intron 55.0%
! TGGTTGATGCCAGTCGGTTC+CGG + chr4_1:72626902-72626921 None:intergenic 55.0%
! GCAAGTGTGTTGCTCGTCGT+CGG + chr4_1:72626947-72626966 None:intergenic 55.0%
CAACGTCGCTTCAGTTGGGA+AGG - chr4_1:72626985-72627004 Msa0570500:intron 55.0%
GAGCAGGAGGAACATGGAAG+TGG - chr4_1:72627669-72627688 Msa0570500:intron 55.0%
GCTTGTCCAGCTCCCATCAA+TGG - chr4_1:72627863-72627882 Msa0570500:intron 55.0%
AGGATCCCATTGATGGGAGC+TGG + chr4_1:72627872-72627891 None:intergenic 55.0%
AGCTCCCATCAATGGGATCC+TGG - chr4_1:72627871-72627890 Msa0570500:intron 55.0%
TCCCATCAATGGGATCCTGG+AGG - chr4_1:72627874-72627893 Msa0570500:intron 55.0%
! CAGAGGAAAAGGGAGGGCAT+TGG - chr4_1:72625683-72625702 Msa0570500:CDS 55.0%
!! GGGTTGGTTTGGGAGAGACT+AGG - chr4_1:72625719-72625738 Msa0570500:CDS 55.0%
TATGACAAGAGGGCTCCTCC+TGG - chr4_1:72629225-72629244 Msa0570500:intron 55.0%
CTTGTCATGGTTCCAGTGGC+TGG + chr4_1:72629276-72629295 None:intergenic 55.0%
GCTTGAGTCTGCAGAAGGCG+AGG - chr4_1:72626376-72626395 Msa0570500:intron 60.0%
GCATCGAACCACCACCAGAG+CGG - chr4_1:72626504-72626523 Msa0570500:intron 60.0%
TGATGTGACCGCTCTGGTGG+TGG + chr4_1:72626515-72626534 None:intergenic 60.0%
ACCACCAGAGCGGTCACATC+AGG - chr4_1:72626514-72626533 Msa0570500:intron 60.0%
TCCTGATGTGACCGCTCTGG+TGG + chr4_1:72626518-72626537 None:intergenic 60.0%
GATCTGGTGTCTCCGGTGGA+GGG + chr4_1:72626685-72626704 None:intergenic 60.0%
GAAGGCGGATCTGGTGTCTC+CGG + chr4_1:72626692-72626711 None:intergenic 60.0%
GAGTCTAGCGACTCTGGTGG+TGG + chr4_1:72626725-72626744 None:intergenic 60.0%
AGAACCGCCACCCAAACCAC+CGG - chr4_1:72626775-72626794 Msa0570500:intron 60.0%
! CAATCCGGTGGTTTGGGTGG+CGG + chr4_1:72626782-72626801 None:intergenic 60.0%
GACGGCCAATCCGGTGGTTT+GGG + chr4_1:72626788-72626807 None:intergenic 60.0%
AGACGGCCAATCCGGTGGTT+TGG + chr4_1:72626789-72626808 None:intergenic 60.0%
TCTGAAGACGGCCAATCCGG+TGG + chr4_1:72626794-72626813 None:intergenic 60.0%
AAGAGACAGGCCCCGATCCA+AGG - chr4_1:72626820-72626839 Msa0570500:intron 60.0%
! GTCGGTTCCGGCCATTTCAG+CGG + chr4_1:72626890-72626909 None:intergenic 60.0%
CTGAAATGGCCGGAACCGAC+TGG - chr4_1:72626890-72626909 Msa0570500:intron 60.0%
GCGGTCGAACCACTGCAAGT+TGG + chr4_1:72626922-72626941 None:intergenic 60.0%
! GTGTTGCTCGTCGTCGGTAG+CGG + chr4_1:72626941-72626960 None:intergenic 60.0%
GGGCTCCTCCTGGTTATGTG+AGG - chr4_1:72629235-72629254 Msa0570500:intron 60.0%
GTGGAGAATGCTCCAGCCAC+TGG - chr4_1:72629261-72629280 Msa0570500:intron 60.0%
TCCCGATCTGCACCCTCCAC+CGG - chr4_1:72626670-72626689 Msa0570500:intron 65.0%
! TCCGGTGGAGGGTGCAGATC+GGG + chr4_1:72626674-72626693 None:intergenic 65.0%
! CTCCGGTGGAGGGTGCAGAT+CGG + chr4_1:72626675-72626694 None:intergenic 65.0%
GGATCTGGTGTCTCCGGTGG+AGG + chr4_1:72626686-72626705 None:intergenic 65.0%
CTCCGTTGGAGATCGGTCGC+AGG + chr4_1:72626755-72626774 None:intergenic 65.0%
! TGGGTGGCGGTTCTCTCCGT+TGG + chr4_1:72626769-72626788 None:intergenic 65.0%
CGCCACCCAAACCACCGGAT+TGG - chr4_1:72626780-72626799 Msa0570500:intron 65.0%
! GGCCAATCCGGTGGTTTGGG+TGG + chr4_1:72626785-72626804 None:intergenic 65.0%
AGACAGGCCCCGATCCAAGG+AGG - chr4_1:72626823-72626842 Msa0570500:intron 65.0%
AGGCCCCGATCCAAGGAGGA+AGG - chr4_1:72626827-72626846 Msa0570500:intron 65.0%
GGCCCCGATCCAAGGAGGAA+GGG - chr4_1:72626828-72626847 Msa0570500:intron 65.0%
ACCACCGCCGCTGAAATGGC+CGG - chr4_1:72626880-72626899 Msa0570500:intron 65.0%
GGTTCCGGCCATTTCAGCGG+CGG + chr4_1:72626887-72626906 None:intergenic 65.0%
GGCGGATCTGGTGTCTCCGG+TGG + chr4_1:72626689-72626708 None:intergenic 70.0%
TCCGGCCATTTCAGCGGCGG+TGG + chr4_1:72626884-72626903 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 72625300 72629535 72625300 ID=Msa0570500;Name=Msa0570500
chr4_1 mRNA 72625300 72629535 72625300 ID=Msa0570500-mRNA-1;Parent=Msa0570500;Name=Msa0570500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=110|1|1|1|0.5|0.33|3|176|153
chr4_1 exon 72625300 72625774 72625300 ID=Msa0570500-mRNA-1:exon:24872;Parent=Msa0570500-mRNA-1
chr4_1 exon 72625873 72626037 72625873 ID=Msa0570500-mRNA-1:exon:24871;Parent=Msa0570500-mRNA-1
chr4_1 exon 72629428 72629535 72629428 ID=Msa0570500-mRNA-1:exon:24870;Parent=Msa0570500-mRNA-1
chr4_1 five_prime_UTR 72629428 72629535 72629428 ID=Msa0570500-mRNA-1:five_prime_utr;Parent=Msa0570500-mRNA-1
chr4_1 five_prime_UTR 72626036 72626037 72626036 ID=Msa0570500-mRNA-1:five_prime_utr;Parent=Msa0570500-mRNA-1
chr4_1 CDS 72625873 72626035 72625873 ID=Msa0570500-mRNA-1:cds;Parent=Msa0570500-mRNA-1
chr4_1 CDS 72625476 72625774 72625476 ID=Msa0570500-mRNA-1:cds;Parent=Msa0570500-mRNA-1
chr4_1 three_prime_UTR 72625300 72625475 72625300 ID=Msa0570500-mRNA-1:three_prime_utr;Parent=Msa0570500-mRNA-1
Gene Sequence

>Msa0570500

ATGGGAGTTAGTGGCACTTTGGAATACTTGTCTGATCTAGTGAGCAGTGGTCACCACCACCTCAAGAAGAAGAAGAGGCAGTTACAAACTGTGGAGCTAAAGGTTAGAATGGACTGTGATGGCTGTGAGCTTAAGGTCAAGAAAACTCTTTCTTCACTAAGTGGGGTACAATCAGTGGATATAAACCGCAAACAGCAAAAAGTGACAGTAACTGGGTTTGTGGATTCAAACAAGGTGCTGAAGAAGGCTAAGTCAACAGGGAAGAAAGCTGAAATTTGGCCTTATGTGCCATACAACTTGGTGGCTCAACCATATGCTGTTTCTTCTTATGACAAGAGGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGAATGCTCCAGCCACTGGAACCATGACAAGATATGAAGACCCTTATGTCAACATGTTCAGTGATGAAAACCCAAATGCATGTTCTATCATGTAG

Protein sequence

>Msa0570500

MGVSGTLEYLSDLVSSGHHHLKKKKRQLQTVELKVRMDCDGCELKVKKTLSSLSGVQSVDINRKQQKVTVTGFVDSNKVLKKAKSTGKKAEIWPYVPYNLVAQPYAVSSYDKRAPPGYVRRVENAPATGTMTRYEDPYVNMFSDENPNACSIM*