Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569430 | XP_003630314.1 | 92.582 | 337 | 18 | 3 | 1 | 335 | 1 | 332 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569430 | G7LEY0 | 92.582 | 337 | 18 | 3 | 1 | 335 | 1 | 332 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0569430 | Msa0569540 | 0.806681 | 7.310020e-50 | -8.615850e-47 |
| Msa0569430 | Msa0925630 | 0.802903 | 4.499060e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569430 | MtrunA17_Chr8g0384691 | 92.582 | 337 | 18 | 3 | 1 | 335 | 1 | 332 | 0.0 | 575 |
| Msa0569430 | MtrunA17_Chr3g0130681 | 64.904 | 208 | 70 | 2 | 122 | 328 | 101 | 306 | 3.38e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569430 | AT4G33480.1 | 68.246 | 211 | 65 | 2 | 122 | 330 | 124 | 334 | 3.39e-99 | 296 |
Find 72 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGACCTGTAAAATTAT+AGG | 0.218189 | 4_1:-71283282 | Msa0569430:three_prime_UTR |
| GTTGTTACTGGTGTTGCTTC+TGG | 0.256857 | 4_1:-71288489 | Msa0569430:CDS |
| TGTTAGTAATTGTTGTAATC+TGG | 0.263737 | 4_1:-71283347 | Msa0569430:three_prime_UTR |
| AAGAATTGGAATGAGAATTA+AGG | 0.278335 | 4_1:+71288700 | None:intergenic |
| TAAGGACCTGTAAAATTATA+GGG | 0.308395 | 4_1:-71283281 | Msa0569430:three_prime_UTR |
| ACAGAAAATTGTAGAAGAAT+TGG | 0.315728 | 4_1:+71288686 | None:intergenic |
| GCAAACCCGGTGGGAGGTTC+CGG | 0.321014 | 4_1:+71288432 | None:intergenic |
| AGTTTCACATGTCATTGTTT+AGG | 0.321371 | 4_1:-71283116 | Msa0569430:three_prime_UTR |
| AGTTAGTATTCGTTGTTATC+TGG | 0.325587 | 4_1:-71283396 | Msa0569430:three_prime_UTR |
| TCCTGATGATATGCCGTTGC+CGG | 0.337706 | 4_1:-71288451 | Msa0569430:CDS |
| GATGTTCAAAATGTTGTTAC+TGG | 0.344264 | 4_1:-71288501 | Msa0569430:CDS |
| CTTCAGTTGAAACTGATGAT+TGG | 0.355516 | 4_1:-71288581 | Msa0569430:CDS |
| GCTCAGGTCAATGAGAAAAT+TGG | 0.364929 | 4_1:+71283224 | None:intergenic |
| AAATTCAGTCTCCTCGTCTA+TGG | 0.365085 | 4_1:+71283797 | None:intergenic |
| TTAATTACTTACGTGTCAAC+GGG | 0.394038 | 4_1:+71288182 | None:intergenic |
| AAATAGATTGACTGTGCTCT+TGG | 0.399674 | 4_1:-71283258 | Msa0569430:three_prime_UTR |
| CATTTGTGAACAGGACTTGC+TGG | 0.414686 | 4_1:-71283841 | Msa0569430:intron |
| TTCTGCTTACTTCAACAAAT+CGG | 0.416331 | 4_1:-71288389 | Msa0569430:CDS |
| CAATAATTCAAAATCAGTAT+TGG | 0.434374 | 4_1:+71288545 | None:intergenic |
| TTCCGTTGGAGTGTGTGGTT+CGG | 0.440368 | 4_1:-71288250 | Msa0569430:CDS |
| TTATTTGTGCAGGGTGAGAA+TGG | 0.443645 | 4_1:-71284223 | Msa0569430:intron |
| TTGGAGGAAGAAGAAGAAGA+AGG | 0.448446 | 4_1:+71288630 | None:intergenic |
| TTTAATTACTTACGTGTCAA+CGG | 0.461784 | 4_1:+71288181 | None:intergenic |
| TCCGGCAACGGCATATCATC+AGG | 0.470462 | 4_1:+71288450 | None:intergenic |
| GGAGACTGAATTTAATGCCT+TGG | 0.472300 | 4_1:-71283787 | Msa0569430:CDS |
| TCCAACGGAAGGTTATTCAT+AGG | 0.482809 | 4_1:+71288263 | None:intergenic |
| GGGTTTGCCATTGACGAAAA+CGG | 0.491547 | 4_1:-71288417 | Msa0569430:CDS |
| CCGTTGCCGGAACCTCCCAC+CGG | 0.491708 | 4_1:-71288438 | Msa0569430:CDS |
| CGGTAAAATCAACCGTGCTC+AGG | 0.495598 | 4_1:+71283208 | None:intergenic |
| AACAAGATGCATGTGTATCT+TGG | 0.502259 | 4_1:+71287126 | None:intergenic |
| GACTGAATTTAATGCCTTGG+TGG | 0.506705 | 4_1:-71283784 | Msa0569430:intron |
| GCGAGCGCATACGCTGCAGC+AGG | 0.519080 | 4_1:+71287148 | None:intergenic |
| TCCTATGAATAACCTTCCGT+TGG | 0.519345 | 4_1:-71288264 | Msa0569430:CDS |
| GTGCTCTTCAATATTTGCAC+AGG | 0.520741 | 4_1:+71288071 | None:intergenic |
| AAAATTGATCATATACATAG+AGG | 0.521725 | 4_1:+71283305 | None:intergenic |
| AAATTGATCATATACATAGA+GGG | 0.530400 | 4_1:+71283306 | None:intergenic |
| ACTTCAGTTTGTTGTTGTGA+AGG | 0.541807 | 4_1:-71285134 | Msa0569430:intron |
| ACATGCATCTTGTTTACAGC+GGG | 0.542894 | 4_1:-71287117 | Msa0569430:intron |
| CCGGTGGGAGGTTCCGGCAA+CGG | 0.543817 | 4_1:+71288438 | None:intergenic |
| TGCACTTATTGAAGCAATGA+TGG | 0.547958 | 4_1:-71283506 | Msa0569430:CDS |
| AATTGCAACTGCTGCTGCTG+AGG | 0.548569 | 4_1:+71288782 | None:intergenic |
| CGTTGCCGGAACCTCCCACC+GGG | 0.548585 | 4_1:-71288437 | Msa0569430:CDS |
| ATCATCAGGATAAAATAAAG+AGG | 0.555773 | 4_1:+71288464 | None:intergenic |
| TATTTGTGCAGGGTGAGAAT+GGG | 0.556129 | 4_1:-71284222 | Msa0569430:intron |
| CTTACAGCTGACCATCCATC+AGG | 0.563519 | 4_1:+71288047 | None:intergenic |
| TCTATGGCGTCAATGACAGC+AGG | 0.580809 | 4_1:+71283813 | None:intergenic |
| TAACCTTCCGTTGGAGTGTG+TGG | 0.581027 | 4_1:-71288255 | Msa0569430:CDS |
| TTCACAACAACAAACTGAAG+TGG | 0.585546 | 4_1:+71285136 | None:intergenic |
| TTCGTCAATGGCAAACCCGG+TGG | 0.591270 | 4_1:+71288422 | None:intergenic |
| AAAACAAAGATAGATGAGAT+CGG | 0.591300 | 4_1:+71283188 | None:intergenic |
| ATATTGAAGAGCACACCTGA+TGG | 0.594346 | 4_1:-71288062 | Msa0569430:CDS |
| TGCAGATGATGGTAATGAAG+TGG | 0.597707 | 4_1:-71285960 | Msa0569430:intron |
| TGAAGAGCACACCTGATGGA+TGG | 0.603729 | 4_1:-71288058 | Msa0569430:CDS |
| TGAGAATGGGATGTTTCAAA+TGG | 0.603878 | 4_1:-71284209 | Msa0569430:CDS |
| GTAATTTCTACACCATCACT+TGG | 0.605477 | 4_1:+71285929 | None:intergenic |
| GTGGATGGCTTGCCAAGTGA+TGG | 0.606609 | 4_1:-71285941 | Msa0569430:CDS |
| GATTACAACAATTACTAACA+AGG | 0.607104 | 4_1:+71283350 | None:intergenic |
| ACAAACTGAAGTGGTTCAGA+TGG | 0.608941 | 4_1:+71285145 | None:intergenic |
| CTCCGAACCACACACTCCAA+CGG | 0.614714 | 4_1:+71288248 | None:intergenic |
| TCGTCAATGGCAAACCCGGT+GGG | 0.620091 | 4_1:+71288423 | None:intergenic |
| ATTACAACAATTACTAACAA+GGG | 0.630057 | 4_1:+71283351 | None:intergenic |
| GAACCACACACTCCAACGGA+AGG | 0.636707 | 4_1:+71288252 | None:intergenic |
| CACATGCATCTTGTTTACAG+CGG | 0.646015 | 4_1:-71287118 | Msa0569430:CDS |
| TCAATGGCAAACCCGGTGGG+AGG | 0.656601 | 4_1:+71288426 | None:intergenic |
| TGTCATTGACGCCATAGACG+AGG | 0.663191 | 4_1:-71283808 | Msa0569430:CDS |
| TACTGTTACACAGCACGTGG+CGG | 0.668638 | 4_1:-71287006 | Msa0569430:CDS |
| AATTGATCATATACATAGAG+GGG | 0.671889 | 4_1:+71283307 | None:intergenic |
| GATATACTTGACTTCCACAC+AGG | 0.674786 | 4_1:-71286964 | Msa0569430:intron |
| GATGATGGTAATGAAGTGGA+TGG | 0.699911 | 4_1:-71285956 | Msa0569430:CDS |
| TAATTACTTACGTGTCAACG+GGG | 0.705064 | 4_1:+71288183 | None:intergenic |
| AGGTACTGTTACACAGCACG+TGG | 0.735751 | 4_1:-71287009 | Msa0569430:CDS |
| AATGAAGTCACATACCACCA+AGG | 0.747149 | 4_1:+71283770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAGTTGTTAAC+AGG | - | chr4_1:71283664-71283683 | Msa0569430:intron | 15.0% |
| !!! | TTTATTATTATTGATGACTA+TGG | - | chr4_1:71283838-71283857 | Msa0569430:intron | 15.0% |
| !! | AAAATTAAATAACACGATTT+AGG | + | chr4_1:71284187-71284206 | None:intergenic | 15.0% |
| !!! | TTATTTTAGTTTTTGTGATA+TGG | - | chr4_1:71284562-71284581 | Msa0569430:intron | 15.0% |
| !! | AATTAAAATCTATGTTTGTA+TGG | - | chr4_1:71284600-71284619 | Msa0569430:intron | 15.0% |
| !! | AAAATGAAAAGTTAATCTTT+AGG | - | chr4_1:71285841-71285860 | Msa0569430:intron | 15.0% |
| !!! | GGTAATTTTATTAACTTAAT+TGG | - | chr4_1:71286061-71286080 | Msa0569430:intron | 15.0% |
| !!! | GCTTCTAAATTTAAAATTAA+TGG | + | chr4_1:71286506-71286525 | None:intergenic | 15.0% |
| !! | ATGAAAATATGTTAATAAGT+CGG | - | chr4_1:71287113-71287132 | Msa0569430:intron | 15.0% |
| !!! | TCTTATAATCCAATTTTATA+AGG | - | chr4_1:71287147-71287166 | Msa0569430:CDS | 15.0% |
| !! | AGATATTATGATAATTAACT+TGG | - | chr4_1:71287706-71287725 | Msa0569430:intron | 15.0% |
| !! | TTTGTAGTTAATTAATGATT+TGG | + | chr4_1:71287796-71287815 | None:intergenic | 15.0% |
| !! | ATTAGATTACAGAGAAAAAA+AGG | - | chr4_1:71283123-71283142 | Msa0569430:three_prime_UTR | 20.0% |
| !! | TTAGATTACAGAGAAAAAAA+GGG | - | chr4_1:71283124-71283143 | Msa0569430:three_prime_UTR | 20.0% |
| !!! | TTTTGAAATGAAACTGAAAT+TGG | + | chr4_1:71283235-71283254 | None:intergenic | 20.0% |
| !! | CAATAATTCAAAATCAGTAT+TGG | + | chr4_1:71283413-71283432 | None:intergenic | 20.0% |
| !!! | ATATGGAATTTTATTAATGC+AGG | - | chr4_1:71283861-71283880 | Msa0569430:intron | 20.0% |
| !!! | AAATTGAGATTTAAAATGCA+GGG | + | chr4_1:71283940-71283959 | None:intergenic | 20.0% |
| !! | ATGCTTTAATAAGAGTTTAA+TGG | - | chr4_1:71284227-71284246 | Msa0569430:intron | 20.0% |
| !!! | TTGTATGAACATTTTGAAAT+TGG | + | chr4_1:71284325-71284344 | None:intergenic | 20.0% |
| !! | TCAAAATGTTCATACAAAAA+TGG | - | chr4_1:71284328-71284347 | Msa0569430:intron | 20.0% |
| !! | CAAAATGTTCATACAAAAAT+GGG | - | chr4_1:71284329-71284348 | Msa0569430:intron | 20.0% |
| !! | AAAATGTTCATACAAAAATG+GGG | - | chr4_1:71284330-71284349 | Msa0569430:intron | 20.0% |
| !!! | CTGTAGATCATAATTTTTAA+AGG | + | chr4_1:71284411-71284430 | None:intergenic | 20.0% |
| !! | ATACAAATACTTCATAGTTT+AGG | + | chr4_1:71284505-71284524 | None:intergenic | 20.0% |
| !! | ACGTAGAAAGAAAAAAAAAA+GGG | + | chr4_1:71284710-71284729 | None:intergenic | 20.0% |
| !! | AACGTAGAAAGAAAAAAAAA+AGG | + | chr4_1:71284711-71284730 | None:intergenic | 20.0% |
| !! | CTTATTCTTGTGATATTATA+AGG | - | chr4_1:71285340-71285359 | Msa0569430:intron | 20.0% |
| !! | GAAGTTGCTAAATTATAATA+CGG | + | chr4_1:71285494-71285513 | None:intergenic | 20.0% |
| !! | AGGAAGTTATTATCAATATA+TGG | - | chr4_1:71285861-71285880 | Msa0569430:intron | 20.0% |
| !!! | AGAAATTACATATTTTGATC+TGG | - | chr4_1:71286040-71286059 | Msa0569430:intron | 20.0% |
| !! | TGAAGTGAAAAATAAAAAAC+GGG | + | chr4_1:71286196-71286215 | None:intergenic | 20.0% |
| !! | GTGAAGTGAAAAATAAAAAA+CGG | + | chr4_1:71286197-71286216 | None:intergenic | 20.0% |
| !! | ATAAGTTCATTTCAATGAAT+TGG | + | chr4_1:71286240-71286259 | None:intergenic | 20.0% |
| !! | TTCATGATATAAACACAATA+TGG | + | chr4_1:71286442-71286461 | None:intergenic | 20.0% |
| !!! | AAATTTAAAATTAATGGACG+AGG | + | chr4_1:71286500-71286519 | None:intergenic | 20.0% |
| !! | ATTTAACTAATATTCAGAAG+AGG | - | chr4_1:71286934-71286953 | Msa0569430:intron | 20.0% |
| !! | TGAAAATATGTTAATAAGTC+GGG | - | chr4_1:71287114-71287133 | Msa0569430:intron | 20.0% |
| !! | AAGAAAATATATAGGAGAAT+TGG | + | chr4_1:71287452-71287471 | None:intergenic | 20.0% |
| !! | ATCTTAAACAAGTCTATAAA+AGG | + | chr4_1:71287557-71287576 | None:intergenic | 20.0% |
| !!! | TAGATCTGAATTTTTACAAT+TGG | - | chr4_1:71287672-71287691 | Msa0569430:intron | 20.0% |
| !!! | ATTGAATTTGAAACTAAGAA+AGG | + | chr4_1:71287834-71287853 | None:intergenic | 20.0% |
| !! | TTTAGTAAATTATGATACGA+TGG | - | chr4_1:71288211-71288230 | Msa0569430:CDS | 20.0% |
| !! | CATGGAATAAATAGTTAAAA+AGG | + | chr4_1:71288369-71288388 | None:intergenic | 20.0% |
| !! | ATTACAACAATTACTAACAA+GGG | + | chr4_1:71288607-71288626 | None:intergenic | 20.0% |
| !! | AAATTGATCATATACATAGA+GGG | + | chr4_1:71288652-71288671 | None:intergenic | 20.0% |
| !! | AAAATTGATCATATACATAG+AGG | + | chr4_1:71288653-71288672 | None:intergenic | 20.0% |
| !!! | TGTATATGATCAATTTTGTA+AGG | - | chr4_1:71288656-71288675 | Msa0569430:CDS | 20.0% |
| !!! | TTTTGATTGTTTTTCAGTTT+TGG | - | chr4_1:71288794-71288813 | Msa0569430:CDS | 20.0% |
| ! | AAGAATTGGAATGAGAATTA+AGG | + | chr4_1:71283258-71283277 | None:intergenic | 25.0% |
| ! | ACAGAAAATTGTAGAAGAAT+TGG | + | chr4_1:71283272-71283291 | None:intergenic | 25.0% |
| ! | ATCATCAGGATAAAATAAAG+AGG | + | chr4_1:71283494-71283513 | None:intergenic | 25.0% |
| ! | TTTAATTACTTACGTGTCAA+CGG | + | chr4_1:71283777-71283796 | None:intergenic | 25.0% |
| ! | TTGACACGTAAGTAATTAAA+AGG | - | chr4_1:71283777-71283796 | Msa0569430:intron | 25.0% |
| !! | ATTAAAAGGTTTTACAACGT+CGG | - | chr4_1:71283791-71283810 | Msa0569430:CDS | 25.0% |
| !! | ATTATTGATGACTATGGATA+TGG | - | chr4_1:71283844-71283863 | Msa0569430:intron | 25.0% |
| !! | CAAATTGAGATTTAAAATGC+AGG | + | chr4_1:71283941-71283960 | None:intergenic | 25.0% |
| ! | GTTCTTAATGTTATCTTGAA+TGG | - | chr4_1:71284007-71284026 | Msa0569430:intron | 25.0% |
| ! | TCTAATGTGAGTTTACTTTA+AGG | - | chr4_1:71284040-71284059 | Msa0569430:intron | 25.0% |
| ! | TCTCAATAATTGATGAGAAA+AGG | + | chr4_1:71284149-71284168 | None:intergenic | 25.0% |
| ! | TTAAATAACACGATTTAGGT+TGG | + | chr4_1:71284183-71284202 | None:intergenic | 25.0% |
| ! | AAGCATTATTCAAAGAGATT+TGG | + | chr4_1:71284213-71284232 | None:intergenic | 25.0% |
| !!! | TATGAACATTTTGAAATTGG+TGG | + | chr4_1:71284322-71284341 | None:intergenic | 25.0% |
| !!! | GAAAATTGATGGATTTTCAT+TGG | - | chr4_1:71284359-71284378 | Msa0569430:intron | 25.0% |
| ! | ATAAAAATGAGTGATATGCA+GGG | + | chr4_1:71284546-71284565 | None:intergenic | 25.0% |
| ! | AATAAAAATGAGTGATATGC+AGG | + | chr4_1:71284547-71284566 | None:intergenic | 25.0% |
| ! | AAAAAGAATGTCATTGTATG+TGG | + | chr4_1:71284658-71284677 | None:intergenic | 25.0% |
| !! | GAAATATGTATTTTCCCATA+AGG | + | chr4_1:71284683-71284702 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAAAAAAGGGAA+AGG | + | chr4_1:71284705-71284724 | None:intergenic | 25.0% |
| ! | TTAGCAAATACAACTCTAAA+CGG | + | chr4_1:71285184-71285203 | None:intergenic | 25.0% |
| !! | CTAAAAACTTGTCAAGTTTT+TGG | - | chr4_1:71285200-71285219 | Msa0569430:intron | 25.0% |
| ! | ACTACTATAAACTAAAAGAG+AGG | + | chr4_1:71285264-71285283 | None:intergenic | 25.0% |
| !! | TTTATAGTAGTGTTTTTCGT+GGG | - | chr4_1:71285273-71285292 | Msa0569430:intron | 25.0% |
| ! | TGATATTATAAGGAGATGTT+TGG | - | chr4_1:71285350-71285369 | Msa0569430:intron | 25.0% |
| ! | GATATTATAAGGAGATGTTT+GGG | - | chr4_1:71285351-71285370 | Msa0569430:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | - | chr4_1:71285426-71285445 | Msa0569430:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | - | chr4_1:71285426-71285445 | Msa0569430:intron | 25.0% |
| ! | TATAATTTCATGTGCAAGTT+AGG | - | chr4_1:71285612-71285631 | Msa0569430:intron | 25.0% |
| ! | TCTAATTATGCAACAATTCA+TGG | + | chr4_1:71285642-71285661 | None:intergenic | 25.0% |
| ! | CGAGTAACAATGAATATATA+TGG | + | chr4_1:71285706-71285725 | None:intergenic | 25.0% |
| ! | ATCAAGCATGAAAAAACTTA+GGG | + | chr4_1:71285766-71285785 | None:intergenic | 25.0% |
| ! | AATCAAGCATGAAAAAACTT+AGG | + | chr4_1:71285767-71285786 | None:intergenic | 25.0% |
| ! | CAGTTGGAAAAATGAAAATT+AGG | + | chr4_1:71285790-71285809 | None:intergenic | 25.0% |
| ! | TTATTATCAATATATGGCCA+GGG | - | chr4_1:71285867-71285886 | Msa0569430:intron | 25.0% |
| !!! | TTGATTTTTTTTCTCAATCG+AGG | - | chr4_1:71286105-71286124 | Msa0569430:intron | 25.0% |
| !! | TATTTTTCACTTCACTAGTA+TGG | - | chr4_1:71286202-71286221 | Msa0569430:intron | 25.0% |
| ! | AAGACTTGATAAAAACAGAT+GGG | + | chr4_1:71286337-71286356 | None:intergenic | 25.0% |
| ! | AAAGACTTGATAAAAACAGA+TGG | + | chr4_1:71286338-71286357 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTATCAAGTCTTT+TGG | - | chr4_1:71286338-71286357 | Msa0569430:intron | 25.0% |
| ! | ACAAGAATAATGTATAGATC+AGG | + | chr4_1:71286375-71286394 | None:intergenic | 25.0% |
| !! | AGAAAGTACAATCAATACTA+CGG | + | chr4_1:71286414-71286433 | None:intergenic | 25.0% |
| !!! | ACTTTTTCTTTCTAAATCGA+GGG | - | chr4_1:71286555-71286574 | Msa0569430:intron | 25.0% |
| !!! | AATAGTCCTTTTTTTTTTGC+AGG | - | chr4_1:71286761-71286780 | Msa0569430:intron | 25.0% |
| ! | TATCTTCCTGCAAAAAAAAA+AGG | + | chr4_1:71286770-71286789 | None:intergenic | 25.0% |
| !!! | AACGTTTTCCTTTTAATTTC+TGG | + | chr4_1:71286904-71286923 | None:intergenic | 25.0% |
| ! | AAAAGGAAAACGTTTGATAT+TGG | - | chr4_1:71286910-71286929 | Msa0569430:intron | 25.0% |
| !!! | TCTTATTTTCTATTTCTGCA+AGG | + | chr4_1:71287028-71287047 | None:intergenic | 25.0% |
| ! | GAAAATATGTTAATAAGTCG+GGG | - | chr4_1:71287115-71287134 | Msa0569430:intron | 25.0% |
| ! | AATCAATCGCCTTATAAAAT+TGG | + | chr4_1:71287159-71287178 | None:intergenic | 25.0% |
| !!! | TTTTATAAGGCGATTGATTT+AGG | - | chr4_1:71287160-71287179 | Msa0569430:CDS | 25.0% |
| ! | TTTATACGAACACAGAATTT+GGG | + | chr4_1:71287191-71287210 | None:intergenic | 25.0% |
| !! | TTTTATACGAACACAGAATT+TGG | + | chr4_1:71287192-71287211 | None:intergenic | 25.0% |
| ! | TAAACAAGTCTATAAAAGGA+GGG | + | chr4_1:71287553-71287572 | None:intergenic | 25.0% |
| ! | TTAAACAAGTCTATAAAAGG+AGG | + | chr4_1:71287554-71287573 | None:intergenic | 25.0% |
| !! | TTTGAAACTAAGAAAGGAAT+TGG | + | chr4_1:71287828-71287847 | None:intergenic | 25.0% |
| ! | TCTCGTATGCATTTATAATA+TGG | - | chr4_1:71287996-71288015 | Msa0569430:intron | 25.0% |
| !! | TACAGCTAAAAAAGTATATC+GGG | + | chr4_1:71288505-71288524 | None:intergenic | 25.0% |
| !! | CTACAGCTAAAAAAGTATAT+CGG | + | chr4_1:71288506-71288525 | None:intergenic | 25.0% |
| ! | GATTACAACAATTACTAACA+AGG | + | chr4_1:71288608-71288627 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTGTTGTAATC+TGG | - | chr4_1:71288608-71288627 | Msa0569430:CDS | 25.0% |
| ! | AATTGATCATATACATAGAG+GGG | + | chr4_1:71288651-71288670 | None:intergenic | 25.0% |
| ! | TAAGGACCTGTAAAATTATA+GGG | - | chr4_1:71288674-71288693 | Msa0569430:CDS | 25.0% |
| !! | CTATTTCCCTATAATTTTAC+AGG | + | chr4_1:71288683-71288702 | None:intergenic | 25.0% |
| ! | AAAACAAAGATAGATGAGAT+CGG | + | chr4_1:71288770-71288789 | None:intergenic | 25.0% |
| TACAGAGAAAAAAAGGGAAA+AGG | - | chr4_1:71283130-71283149 | Msa0569430:three_prime_UTR | 30.0% | |
| ACAGAGAAAAAAAGGGAAAA+GGG | - | chr4_1:71283131-71283150 | Msa0569430:three_prime_UTR | 30.0% | |
| ! | AGGAGAATTTTTCTGTGATT+TGG | + | chr4_1:71283302-71283321 | None:intergenic | 30.0% |
| ! | CTTTTTCTTCGTCTTCTTTT+TGG | + | chr4_1:71283347-71283366 | None:intergenic | 30.0% |
| ! | ATTATTGCGTGATTTTTCTG+CGG | - | chr4_1:71283426-71283445 | Msa0569430:three_prime_UTR | 30.0% |
| GATGTTCAAAATGTTGTTAC+TGG | - | chr4_1:71283454-71283473 | Msa0569430:three_prime_UTR | 30.0% | |
| TTCTGCTTACTTCAACAAAT+CGG | - | chr4_1:71283566-71283585 | Msa0569430:intron | 30.0% | |
| TTAATTACTTACGTGTCAAC+GGG | + | chr4_1:71283776-71283795 | None:intergenic | 30.0% | |
| GTTGCATCTAATCTTCATTT+AGG | - | chr4_1:71283977-71283996 | Msa0569430:intron | 30.0% | |
| GTAAAACTATTTCACAGTGA+CGG | + | chr4_1:71284260-71284279 | None:intergenic | 30.0% | |
| ATATGCAGGGAACAAATATT+GGG | + | chr4_1:71284533-71284552 | None:intergenic | 30.0% | |
| ! | TGACATTCTTTTTGACCTTA+TGG | - | chr4_1:71284665-71284684 | Msa0569430:intron | 30.0% |
| ! | GACATTCTTTTTGACCTTAT+GGG | - | chr4_1:71284666-71284685 | Msa0569430:intron | 30.0% |
| AAAATATCTCTGTCCATATC+AGG | - | chr4_1:71284926-71284945 | Msa0569430:intron | 30.0% | |
| TAAAAAAATACTTGCCTGTG+TGG | + | chr4_1:71285008-71285027 | None:intergenic | 30.0% | |
| ACATTAGTACTTCAGAGAAT+GGG | + | chr4_1:71285035-71285054 | None:intergenic | 30.0% | |
| TTAGAGTGTAAACAAAGCAA+AGG | - | chr4_1:71285070-71285089 | Msa0569430:intron | 30.0% | |
| TAGAGTGTAAACAAAGCAAA+GGG | - | chr4_1:71285071-71285090 | Msa0569430:intron | 30.0% | |
| ! | GTTTATAGTAGTGTTTTTCG+TGG | - | chr4_1:71285272-71285291 | Msa0569430:intron | 30.0% |
| TTCATTCTCCTTAGTAAGAA+GGG | + | chr4_1:71285308-71285327 | None:intergenic | 30.0% | |
| ATTCATTCTCCTTAGTAAGA+AGG | + | chr4_1:71285309-71285328 | None:intergenic | 30.0% | |
| TATCACAAGAATAAGTGACT+TGG | + | chr4_1:71285335-71285354 | None:intergenic | 30.0% | |
| GTTATTATCAATATATGGCC+AGG | - | chr4_1:71285866-71285885 | Msa0569430:intron | 30.0% | |
| ! | TAATACCATTTTGCAGATGA+TGG | - | chr4_1:71285984-71286003 | Msa0569430:intron | 30.0% |
| TAAGTGTTTCCAAGTTAGTA+AGG | - | chr4_1:71286136-71286155 | Msa0569430:intron | 30.0% | |
| ! | GCTTTGTATAGATGCATTTT+TGG | - | chr4_1:71286466-71286485 | Msa0569430:intron | 30.0% |
| ! | TAAATTTAGAAGCGTGACAA+AGG | - | chr4_1:71286513-71286532 | Msa0569430:intron | 30.0% |
| !! | GACTTTTTCTTTCTAAATCG+AGG | - | chr4_1:71286554-71286573 | Msa0569430:intron | 30.0% |
| GATAGTTGTAAAGTGACTAT+TGG | + | chr4_1:71286611-71286630 | None:intergenic | 30.0% | |
| CTTAACATTATTCCCATAGT+GGG | + | chr4_1:71287069-71287088 | None:intergenic | 30.0% | |
| TCTTAACATTATTCCCATAG+TGG | + | chr4_1:71287070-71287089 | None:intergenic | 30.0% | |
| !! | TAGGTTTTGTAGTGGAATAT+GGG | + | chr4_1:71287411-71287430 | None:intergenic | 30.0% |
| AGACGGAGAAGAAAATATAT+AGG | + | chr4_1:71287460-71287479 | None:intergenic | 30.0% | |
| GAAAAAGGGAAAGAAATAGA+GGG | + | chr4_1:71287529-71287548 | None:intergenic | 30.0% | |
| AAACAAGTCTATAAAAGGAG+GGG | + | chr4_1:71287552-71287571 | None:intergenic | 30.0% | |
| AGTAAAAGGGGAGAAAAAAT+AGG | + | chr4_1:71287881-71287900 | None:intergenic | 30.0% | |
| TCTCAGAAAAAGGAGTAAAA+GGG | + | chr4_1:71287894-71287913 | None:intergenic | 30.0% | |
| ATCTCAGAAAAAGGAGTAAA+AGG | + | chr4_1:71287895-71287914 | None:intergenic | 30.0% | |
| ATATTAAGGCAACCAAAATC+TGG | + | chr4_1:71287943-71287962 | None:intergenic | 30.0% | |
| ! | TTGGTTGCCTTAATATTTTC+CGG | - | chr4_1:71287947-71287966 | Msa0569430:intron | 30.0% |
| ACAGAAGACAAATTCACATA+TGG | - | chr4_1:71288306-71288325 | Msa0569430:intron | 30.0% | |
| TCGTCAAACTTAATGTAACA+TGG | + | chr4_1:71288387-71288406 | None:intergenic | 30.0% | |
| AGTTAGTATTCGTTGTTATC+TGG | - | chr4_1:71288559-71288578 | Msa0569430:CDS | 30.0% | |
| GTAAGGACCTGTAAAATTAT+AGG | - | chr4_1:71288673-71288692 | Msa0569430:CDS | 30.0% | |
| AGTTTCACATGTCATTGTTT+AGG | - | chr4_1:71288839-71288858 | Msa0569430:five_prime_UTR | 30.0% | |
| AAAAAAGGGAAAAGGGAGTA+TGG | - | chr4_1:71283138-71283157 | Msa0569430:three_prime_UTR | 35.0% | |
| ! | TTTCTTCGTCTTCTTTTTGG+AGG | + | chr4_1:71283344-71283363 | None:intergenic | 35.0% |
| CTTCAGTTGAAACTGATGAT+TGG | - | chr4_1:71283374-71283393 | Msa0569430:three_prime_UTR | 35.0% | |
| ! | AATTTCACCGTTTTCGTCAA+TGG | + | chr4_1:71283548-71283567 | None:intergenic | 35.0% |
| TAATTACTTACGTGTCAACG+GGG | + | chr4_1:71283775-71283794 | None:intergenic | 35.0% | |
| TCGACAAATGAGCTTCTTTA+CGG | + | chr4_1:71284067-71284086 | None:intergenic | 35.0% | |
| TAAAGAAGCTCATTTGTCGA+TGG | - | chr4_1:71284067-71284086 | Msa0569430:intron | 35.0% | |
| AAAGAAGCTCATTTGTCGAT+GGG | - | chr4_1:71284068-71284087 | Msa0569430:intron | 35.0% | |
| ! | TTGAAATTGGTGGTATGACA+TGG | + | chr4_1:71284312-71284331 | None:intergenic | 35.0% |
| !! | GATGGATTTTCATTGGATGT+CGG | - | chr4_1:71284366-71284385 | Msa0569430:intron | 35.0% |
| GATATGCAGGGAACAAATAT+TGG | + | chr4_1:71284534-71284553 | None:intergenic | 35.0% | |
| TTGTGATATGGACAGATAAC+TGG | - | chr4_1:71284574-71284593 | Msa0569430:intron | 35.0% | |
| CAGAAGGAAGACATGAATTT+GGG | + | chr4_1:71284749-71284768 | None:intergenic | 35.0% | |
| ACAGAAGGAAGACATGAATT+TGG | + | chr4_1:71284750-71284769 | None:intergenic | 35.0% | |
| AACAAGATGCATGTGTATCT+TGG | + | chr4_1:71284832-71284851 | None:intergenic | 35.0% | |
| GACATTAGTACTTCAGAGAA+TGG | + | chr4_1:71285036-71285055 | None:intergenic | 35.0% | |
| AGCAAAGGGTTTATTCAGTT+TGG | - | chr4_1:71285085-71285104 | Msa0569430:intron | 35.0% | |
| ATTTAGACCCCTTCTTACTA+AGG | - | chr4_1:71285297-71285316 | Msa0569430:intron | 35.0% | |
| TCATTCTCCTTAGTAAGAAG+GGG | + | chr4_1:71285307-71285326 | None:intergenic | 35.0% | |
| CAACTACTGGACTTAAAGTT+TGG | - | chr4_1:71285439-71285458 | Msa0569430:intron | 35.0% | |
| CAACTACTGGACTTAAAGTT+TGG | - | chr4_1:71285439-71285458 | Msa0569430:intron | 35.0% | |
| AATTTCATGTGCAAGTTAGG+TGG | - | chr4_1:71285615-71285634 | Msa0569430:intron | 35.0% | |
| CATTACCATCATCTGCAAAA+TGG | + | chr4_1:71285992-71286011 | None:intergenic | 35.0% | |
| GTAATTTCTACACCATCACT+TGG | + | chr4_1:71286029-71286048 | None:intergenic | 35.0% | |
| ! | AGTTTGCTTCCTTACTAACT+TGG | + | chr4_1:71286148-71286167 | None:intergenic | 35.0% |
| ! | AGTGTGTTATTGTTCTTCCT+TGG | - | chr4_1:71286279-71286298 | Msa0569430:intron | 35.0% |
| ! | TTTTCTTTCTAAATCGAGGG+AGG | - | chr4_1:71286558-71286577 | Msa0569430:intron | 35.0% |
| TTTCTTTCTAAATCGAGGGA+GGG | - | chr4_1:71286559-71286578 | Msa0569430:intron | 35.0% | |
| !! | GTTTGACCTTGTCACTTTAA+GGG | + | chr4_1:71286656-71286675 | None:intergenic | 35.0% |
| !! | AGTTTGACCTTGTCACTTTA+AGG | + | chr4_1:71286657-71286676 | None:intergenic | 35.0% |
| TACAAACTTGGGTAGAACTT+TGG | - | chr4_1:71286712-71286731 | Msa0569430:intron | 35.0% | |
| TTCACAACAACAAACTGAAG+TGG | + | chr4_1:71286822-71286841 | None:intergenic | 35.0% | |
| !! | ACTTCAGTTTGTTGTTGTGA+AGG | - | chr4_1:71286821-71286840 | Msa0569430:intron | 35.0% |
| AGATTGAAAGTAACCATTGC+AGG | - | chr4_1:71286872-71286891 | Msa0569430:intron | 35.0% | |
| GGATCACACCAGAAATTAAA+AGG | - | chr4_1:71286893-71286912 | Msa0569430:intron | 35.0% | |
| ATGAAATGATACTCCCACTA+TGG | - | chr4_1:71287053-71287072 | Msa0569430:intron | 35.0% | |
| TGAAATGATACTCCCACTAT+GGG | - | chr4_1:71287054-71287073 | Msa0569430:intron | 35.0% | |
| AAGCCTATCCAAGATTCATA+AGG | - | chr4_1:71287210-71287229 | Msa0569430:intron | 35.0% | |
| TGACCTTATGAATCTTGGAT+AGG | + | chr4_1:71287216-71287235 | None:intergenic | 35.0% | |
| GTCTCACATTGAATATGATC+TGG | - | chr4_1:71287325-71287344 | Msa0569430:intron | 35.0% | |
| GGAATTGAAAACATACTTCC+AGG | + | chr4_1:71287351-71287370 | None:intergenic | 35.0% | |
| !! | GTAGGTTTTGTAGTGGAATA+TGG | + | chr4_1:71287412-71287431 | None:intergenic | 35.0% |
| CAGAGAATGGTGAATAAAGA+CGG | + | chr4_1:71287477-71287496 | None:intergenic | 35.0% | |
| GGAAAAAGGGAAAGAAATAG+AGG | + | chr4_1:71287530-71287549 | None:intergenic | 35.0% | |
| TATAAAAGGAGGGGGAAAAA+GGG | + | chr4_1:71287543-71287562 | None:intergenic | 35.0% | |
| AACAAGTCTATAAAAGGAGG+GGG | + | chr4_1:71287551-71287570 | None:intergenic | 35.0% | |
| CTACTAGTATTCACAGAGTA+GGG | + | chr4_1:71287635-71287654 | None:intergenic | 35.0% | |
| ACTACTAGTATTCACAGAGT+AGG | + | chr4_1:71287636-71287655 | None:intergenic | 35.0% | |
| TGAGAATGGGATGTTTCAAA+TGG | - | chr4_1:71287746-71287765 | Msa0569430:intron | 35.0% | |
| ! | AAATGGCTGATGATGTAAGT+AGG | - | chr4_1:71287763-71287782 | Msa0569430:intron | 35.0% |
| CTCAGAAAAAGGAGTAAAAG+GGG | + | chr4_1:71287893-71287912 | None:intergenic | 35.0% | |
| ! | ACAAAAGGTTGTCCAGATTT+TGG | - | chr4_1:71287928-71287947 | Msa0569430:intron | 35.0% |
| TGCATACGAGAAACAAAAGT+TGG | + | chr4_1:71287987-71288006 | None:intergenic | 35.0% | |
| ! | TGACTTTTGCAACACACTTA+TGG | + | chr4_1:71288283-71288302 | None:intergenic | 35.0% |
| TAGGAAACACAACACAAACA+TGG | + | chr4_1:71288418-71288437 | None:intergenic | 35.0% | |
| TGCACTTATTGAAGCAATGA+TGG | - | chr4_1:71288449-71288468 | Msa0569430:CDS | 35.0% | |
| AAATAGATTGACTGTGCTCT+TGG | - | chr4_1:71288697-71288716 | Msa0569430:CDS | 35.0% | |
| TTGGAGGAAGAAGAAGAAGA+AGG | + | chr4_1:71283328-71283347 | None:intergenic | 40.0% | |
| ! | TCACCATAGTGAGTATTGCT+TGG | - | chr4_1:71283593-71283612 | Msa0569430:intron | 40.0% |
| GAACCAAGCAATACTCACTA+TGG | + | chr4_1:71283599-71283618 | None:intergenic | 40.0% | |
| TCCTATGAATAACCTTCCGT+TGG | - | chr4_1:71283691-71283710 | Msa0569430:intron | 40.0% | |
| TCCAACGGAAGGTTATTCAT+AGG | + | chr4_1:71283695-71283714 | None:intergenic | 40.0% | |
| GTGCTCTTCAATATTTGCAC+AGG | + | chr4_1:71283887-71283906 | None:intergenic | 40.0% | |
| ! | ATATTGAAGAGCACACCTGA+TGG | - | chr4_1:71283893-71283912 | Msa0569430:intron | 40.0% |
| !! | AAAAGGCGCTAAACAACAGT+TGG | + | chr4_1:71284132-71284151 | None:intergenic | 40.0% |
| TACTCATTCATCACAGTCAC+AGG | - | chr4_1:71284463-71284482 | Msa0569430:intron | 40.0% | |
| ACTCATTCATCACAGTCACA+GGG | - | chr4_1:71284464-71284483 | Msa0569430:intron | 40.0% | |
| ! | TCGCTGATCTAAAACACAGA+AGG | + | chr4_1:71284765-71284784 | None:intergenic | 40.0% |
| !! | TTCTGTGTTTTAGATCAGCG+AGG | - | chr4_1:71284764-71284783 | Msa0569430:intron | 40.0% |
| ! | CACATGCATCTTGTTTACAG+CGG | - | chr4_1:71284837-71284856 | Msa0569430:intron | 40.0% |
| ! | ACATGCATCTTGTTTACAGC+GGG | - | chr4_1:71284838-71284857 | Msa0569430:intron | 40.0% |
| CTGTGTAACAGTACCTGATA+TGG | + | chr4_1:71284942-71284961 | None:intergenic | 40.0% | |
| GATATACTTGACTTCCACAC+AGG | - | chr4_1:71284991-71285010 | Msa0569430:intron | 40.0% | |
| ! | ATAAGGAGATGTTTGGGACA+TGG | - | chr4_1:71285357-71285376 | Msa0569430:intron | 40.0% |
| ! | TAAGGAGATGTTTGGGACAT+GGG | - | chr4_1:71285358-71285377 | Msa0569430:intron | 40.0% |
| TCACAATCAGACATGACAGT+TGG | + | chr4_1:71285806-71285825 | None:intergenic | 40.0% | |
| ! | TGCAGATGATGGTAATGAAG+TGG | - | chr4_1:71285995-71286014 | Msa0569430:intron | 40.0% |
| ! | GATGATGGTAATGAAGTGGA+TGG | - | chr4_1:71285999-71286018 | Msa0569430:intron | 40.0% |
| AAACAAAAGCAACACTGGTG+CGG | + | chr4_1:71286314-71286333 | None:intergenic | 40.0% | |
| ATGGGAAACAAAAGCAACAC+TGG | + | chr4_1:71286319-71286338 | None:intergenic | 40.0% | |
| !! | TCAAGTCTTTTGGAAGATCG+TGG | - | chr4_1:71286348-71286367 | Msa0569430:intron | 40.0% |
| TTCTTTCTAAATCGAGGGAG+GGG | - | chr4_1:71286560-71286579 | Msa0569430:intron | 40.0% | |
| GTTCTACCCAAGTTTGTATC+AGG | + | chr4_1:71286710-71286729 | None:intergenic | 40.0% | |
| ACAAACTGAAGTGGTTCAGA+TGG | + | chr4_1:71286813-71286832 | None:intergenic | 40.0% | |
| CTTTCAGAAGCTTGTACAAG+TGG | + | chr4_1:71286854-71286873 | None:intergenic | 40.0% | |
| AAGAGGTTCTTCTCTCTTCT+AGG | - | chr4_1:71286951-71286970 | Msa0569430:intron | 40.0% | |
| ! | ACGAACACAGAATTTGGGTT+GGG | + | chr4_1:71287186-71287205 | None:intergenic | 40.0% |
| TACGAACACAGAATTTGGGT+TGG | + | chr4_1:71287187-71287206 | None:intergenic | 40.0% | |
| AGAGGTGACCTTATGAATCT+TGG | + | chr4_1:71287221-71287240 | None:intergenic | 40.0% | |
| ACGATAGCAGTAACTGATAG+AGG | + | chr4_1:71287239-71287258 | None:intergenic | 40.0% | |
| ACATTGAATATGATCTGGCC+TGG | - | chr4_1:71287330-71287349 | Msa0569430:intron | 40.0% | |
| TGAGAGTCGTTCTCATTTCT+AGG | + | chr4_1:71287372-71287391 | None:intergenic | 40.0% | |
| !!! | AAGGTTGGTAGGTTTTGTAG+TGG | + | chr4_1:71287419-71287438 | None:intergenic | 40.0% |
| ATATATAGGAGAATTGGCGC+AGG | + | chr4_1:71287446-71287465 | None:intergenic | 40.0% | |
| CTATAAAAGGAGGGGGAAAA+AGG | + | chr4_1:71287544-71287563 | None:intergenic | 40.0% | |
| ATAATGCCACTGTTCTCCAA+TGG | + | chr4_1:71287591-71287610 | None:intergenic | 40.0% | |
| ! | AACTTGGCCTTTATTTGTGC+AGG | - | chr4_1:71287722-71287741 | Msa0569430:intron | 40.0% |
| ! | ACTTGGCCTTTATTTGTGCA+GGG | - | chr4_1:71287723-71287742 | Msa0569430:intron | 40.0% |
| TTCTCACCCTGCACAAATAA+AGG | + | chr4_1:71287732-71287751 | None:intergenic | 40.0% | |
| TTATTTGTGCAGGGTGAGAA+TGG | - | chr4_1:71287732-71287751 | Msa0569430:intron | 40.0% | |
| TATTTGTGCAGGGTGAGAAT+GGG | - | chr4_1:71287733-71287752 | Msa0569430:intron | 40.0% | |
| !! | ATCAGAGTGCCACTTACAAA+AGG | - | chr4_1:71287913-71287932 | Msa0569430:intron | 40.0% |
| ! | TCTGGACAACCTTTTGTAAG+TGG | + | chr4_1:71287925-71287944 | None:intergenic | 40.0% |
| CGTGTGCTTGTGATTTAATC+TGG | - | chr4_1:71288083-71288102 | Msa0569430:intron | 40.0% | |
| AAATTCAGTCTCCTCGTCTA+TGG | + | chr4_1:71288161-71288180 | None:intergenic | 40.0% | |
| GGAGACTGAATTTAATGCCT+TGG | - | chr4_1:71288168-71288187 | Msa0569430:intron | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | - | chr4_1:71288171-71288190 | Msa0569430:intron | 40.0% | |
| AATGAAGTCACATACCACCA+AGG | + | chr4_1:71288188-71288207 | None:intergenic | 40.0% | |
| GTTTGTGTTGTGTTTCCTAC+AGG | - | chr4_1:71288419-71288438 | Msa0569430:CDS | 40.0% | |
| GCTCAGGTCAATGAGAAAAT+TGG | + | chr4_1:71288734-71288753 | None:intergenic | 40.0% | |
| ! | TTTTCTCATTGACCTGAGCA+CGG | - | chr4_1:71288735-71288754 | Msa0569430:CDS | 40.0% |
| GAAGAAGAAGAAGAAGGAGG+AGG | + | chr4_1:71283322-71283341 | None:intergenic | 45.0% | |
| GAGGAAGAAGAAGAAGAAGG+AGG | + | chr4_1:71283325-71283344 | None:intergenic | 45.0% | |
| !! | GTTGTTACTGGTGTTGCTTC+TGG | - | chr4_1:71283466-71283485 | Msa0569430:exon | 45.0% |
| ! | GTTTTCGTCAATGGCAAACC+CGG | + | chr4_1:71283539-71283558 | None:intergenic | 45.0% |
| GGGTTTGCCATTGACGAAAA+CGG | - | chr4_1:71283538-71283557 | Msa0569430:intron | 45.0% | |
| TGGGGTGATGCGAAAATTGA+TGG | - | chr4_1:71284348-71284367 | Msa0569430:intron | 45.0% | |
| !! | TGTGTTTTAGATCAGCGAGG+AGG | - | chr4_1:71284767-71284786 | Msa0569430:intron | 45.0% |
| GAATGCGTTTATCATCACCC+TGG | + | chr4_1:71285887-71285906 | None:intergenic | 45.0% | |
| TCTTTCTAAATCGAGGGAGG+GGG | - | chr4_1:71286561-71286580 | Msa0569430:intron | 45.0% | |
| AAGGACTTCAAATCTCGTCG+GGG | + | chr4_1:71286633-71286652 | None:intergenic | 45.0% | |
| GAAGGACTTCAAATCTCGTC+GGG | + | chr4_1:71286634-71286653 | None:intergenic | 45.0% | |
| GGAAGGACTTCAAATCTCGT+CGG | + | chr4_1:71286635-71286654 | None:intergenic | 45.0% | |
| GTCCTTCCCTTAAAGTGACA+AGG | - | chr4_1:71286647-71286666 | Msa0569430:intron | 45.0% | |
| !! | GACCTTGTCACTTTAAGGGA+AGG | + | chr4_1:71286652-71286671 | None:intergenic | 45.0% |
| AGACGGCCTGATACAAACTT+GGG | - | chr4_1:71286701-71286720 | Msa0569430:intron | 45.0% | |
| ! | TTTCTGGTGTGATCCTGCAA+TGG | + | chr4_1:71286888-71286907 | None:intergenic | 45.0% |
| CATTTGGAAGGTGACTTGAG+TGG | + | chr4_1:71287263-71287282 | None:intergenic | 45.0% | |
| ACCTTCCAAATGTTCAGTCC+TGG | - | chr4_1:71287271-71287290 | Msa0569430:intron | 45.0% | |
| TCCAGGACTGAACATTTGGA+AGG | + | chr4_1:71287275-71287294 | None:intergenic | 45.0% | |
| CATGTCCAGGACTGAACATT+TGG | + | chr4_1:71287279-71287298 | None:intergenic | 45.0% | |
| AATGTTCAGTCCTGGACATG+AGG | - | chr4_1:71287279-71287298 | Msa0569430:intron | 45.0% | |
| ATGTTCAGTCCTGGACATGA+GGG | - | chr4_1:71287280-71287299 | Msa0569430:intron | 45.0% | |
| ! | TGTAGTGGAATATGGGACTG+CGG | + | chr4_1:71287404-71287423 | None:intergenic | 45.0% |
| GAAAGAAATAGAGGGAGTCG+GGG | + | chr4_1:71287521-71287540 | None:intergenic | 45.0% | |
| GGAAAGAAATAGAGGGAGTC+GGG | + | chr4_1:71287522-71287541 | None:intergenic | 45.0% | |
| GGGAAAGAAATAGAGGGAGT+CGG | + | chr4_1:71287523-71287542 | None:intergenic | 45.0% | |
| AAGATGCCTGTCATTGCCAT+TGG | - | chr4_1:71287572-71287591 | Msa0569430:intron | 45.0% | |
| TGTTCTCCAATGGCAATGAC+AGG | + | chr4_1:71287581-71287600 | None:intergenic | 45.0% | |
| TCATTGCCATTGGAGAACAG+TGG | - | chr4_1:71287582-71287601 | Msa0569430:intron | 45.0% | |
| GGCACTCTGATCTCAGAAAA+AGG | + | chr4_1:71287904-71287923 | None:intergenic | 45.0% | |
| ! | GCCTTAATATTTTCCGGCTG+TGG | - | chr4_1:71287953-71287972 | Msa0569430:intron | 45.0% |
| GCCACAGCCGGAAAATATTA+AGG | + | chr4_1:71287957-71287976 | None:intergenic | 45.0% | |
| CATTTGTGAACAGGACTTGC+TGG | - | chr4_1:71288114-71288133 | Msa0569430:intron | 45.0% | |
| TAAGTGCAGCTTCTTCCTGT+AGG | + | chr4_1:71288437-71288456 | None:intergenic | 45.0% | |
| AATTGCAACTGCTGCTGCTG+AGG | + | chr4_1:71283176-71283195 | None:intergenic | 50.0% | |
| TCCTGATGATATGCCGTTGC+CGG | - | chr4_1:71283504-71283523 | Msa0569430:CDS | 50.0% | |
| TAACCTTCCGTTGGAGTGTG+TGG | - | chr4_1:71283700-71283719 | Msa0569430:intron | 50.0% | |
| TTCCGTTGGAGTGTGTGGTT+CGG | - | chr4_1:71283705-71283724 | Msa0569430:intron | 50.0% | |
| ! | TGAAGAGCACACCTGATGGA+TGG | - | chr4_1:71283897-71283916 | Msa0569430:intron | 50.0% |
| CTTACAGCTGACCATCCATC+AGG | + | chr4_1:71283911-71283930 | None:intergenic | 50.0% | |
| ! | AGGTACTGTTACACAGCACG+TGG | - | chr4_1:71284946-71284965 | Msa0569430:intron | 50.0% |
| TACTGTTACACAGCACGTGG+CGG | - | chr4_1:71284949-71284968 | Msa0569430:intron | 50.0% | |
| TGGTGCGGTAATACAGACCA+AGG | + | chr4_1:71286299-71286318 | None:intergenic | 50.0% | |
| GAAGCGTGACAAAGGAACCT+CGG | - | chr4_1:71286521-71286540 | Msa0569430:intron | 50.0% | |
| AAGCGTGACAAAGGAACCTC+GGG | - | chr4_1:71286522-71286541 | Msa0569430:intron | 50.0% | |
| AAAAGTCTGCATCAAGCCCG+AGG | + | chr4_1:71286541-71286560 | None:intergenic | 50.0% | |
| CAGACGGCCTGATACAAACT+TGG | - | chr4_1:71286700-71286719 | Msa0569430:intron | 50.0% | |
| ACACATTCTCCCTCATGTCC+AGG | + | chr4_1:71287292-71287311 | None:intergenic | 50.0% | |
| TATAGGAGAATTGGCGCAGG+AGG | + | chr4_1:71287443-71287462 | None:intergenic | 50.0% | |
| TCTATGGCGTCAATGACAGC+AGG | + | chr4_1:71288145-71288164 | None:intergenic | 50.0% | |
| TGTCATTGACGCCATAGACG+AGG | - | chr4_1:71288147-71288166 | Msa0569430:intron | 50.0% | |
| CGGTAAAATCAACCGTGCTC+AGG | + | chr4_1:71288750-71288769 | None:intergenic | 50.0% | |
| TCCGGCAACGGCATATCATC+AGG | + | chr4_1:71283508-71283527 | None:intergenic | 55.0% | |
| TCGTCAATGGCAAACCCGGT+GGG | + | chr4_1:71283535-71283554 | None:intergenic | 55.0% | |
| TTCGTCAATGGCAAACCCGG+TGG | + | chr4_1:71283536-71283555 | None:intergenic | 55.0% | |
| GAACCACACACTCCAACGGA+AGG | + | chr4_1:71283706-71283725 | None:intergenic | 55.0% | |
| CTCCGAACCACACACTCCAA+CGG | + | chr4_1:71283710-71283729 | None:intergenic | 55.0% | |
| ! | GTGGATGGCTTGCCAAGTGA+TGG | - | chr4_1:71286014-71286033 | Msa0569430:intron | 55.0% |
| ! | TCTGCGAGGTGTCAACTCAG+TGG | + | chr4_1:71286684-71286703 | None:intergenic | 55.0% |
| ! | CTGAGTTGACACCTCGCAGA+CGG | - | chr4_1:71286684-71286703 | Msa0569430:intron | 55.0% |
| TTTGTATCAGGCCGTCTGCG+AGG | + | chr4_1:71286698-71286717 | None:intergenic | 55.0% | |
| ATTGGCGCAGGAGGAAAGGT+TGG | + | chr4_1:71287434-71287453 | None:intergenic | 55.0% | |
| GAGAATTGGCGCAGGAGGAA+AGG | + | chr4_1:71287438-71287457 | None:intergenic | 55.0% | |
| GGACAGATGGGAGCAGAGAA+TGG | + | chr4_1:71287490-71287509 | None:intergenic | 55.0% | |
| GGGGTGCAATGAGGACAGAT+GGG | + | chr4_1:71287502-71287521 | None:intergenic | 55.0% | |
| TCAATGGCAAACCCGGTGGG+AGG | + | chr4_1:71283532-71283551 | None:intergenic | 60.0% | |
| ! | GCGCAGGAGGAAAGGTTGGT+AGG | + | chr4_1:71287430-71287449 | None:intergenic | 60.0% |
| CGGGGTGCAATGAGGACAGA+TGG | + | chr4_1:71287503-71287522 | None:intergenic | 60.0% | |
| GTTGGAACGCATGCCACAGC+CGG | + | chr4_1:71287969-71287988 | None:intergenic | 60.0% | |
| GCAAACCCGGTGGGAGGTTC+CGG | + | chr4_1:71283526-71283545 | None:intergenic | 65.0% | |
| GAGGGAGTCGGGGTGCAATG+AGG | + | chr4_1:71287511-71287530 | None:intergenic | 65.0% | |
| CCGGTGGGAGGTTCCGGCAA+CGG | + | chr4_1:71283520-71283539 | None:intergenic | 70.0% | |
| CCGTTGCCGGAACCTCCCAC+CGG | - | chr4_1:71283517-71283536 | Msa0569430:CDS | 70.0% | |
| CGTTGCCGGAACCTCCCACC+GGG | - | chr4_1:71283518-71283537 | Msa0569430:intron | 70.0% | |
| GCGAGCGCATACGCTGCAGC+AGG | + | chr4_1:71284810-71284829 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 71283109 | 71288868 | 71283109 | ID=Msa0569430;Name=Msa0569430 |
| chr4_1 | mRNA | 71283109 | 71288868 | 71283109 | ID=Msa0569430-mRNA-1;Parent=Msa0569430;Name=Msa0569430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=48|0.9|0.90|1|0.9|0.81|11|352|335 |
| chr4_1 | exon | 71283109 | 71283166 | 71283109 | ID=Msa0569430-mRNA-1:exon:24191;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71283189 | 71283536 | 71283189 | ID=Msa0569430-mRNA-1:exon:24190;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71283785 | 71283850 | 71283785 | ID=Msa0569430-mRNA-1:exon:24189;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71284201 | 71284233 | 71284201 | ID=Msa0569430-mRNA-1:exon:24188;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71285135 | 71285194 | 71285135 | ID=Msa0569430-mRNA-1:exon:24187;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71285916 | 71285977 | 71285916 | ID=Msa0569430-mRNA-1:exon:24186;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71286965 | 71287029 | 71286965 | ID=Msa0569430-mRNA-1:exon:24185;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71287118 | 71287200 | 71287118 | ID=Msa0569430-mRNA-1:exon:24184;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71288052 | 71288094 | 71288052 | ID=Msa0569430-mRNA-1:exon:24183;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71288194 | 71288291 | 71288194 | ID=Msa0569430-mRNA-1:exon:24182;Parent=Msa0569430-mRNA-1 |
| chr4_1 | exon | 71288377 | 71288868 | 71288377 | ID=Msa0569430-mRNA-1:exon:24181;Parent=Msa0569430-mRNA-1 |
| chr4_1 | five_prime_UTR | 71288821 | 71288868 | 71288821 | ID=Msa0569430-mRNA-1:five_prime_utr;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71288377 | 71288820 | 71288377 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71288194 | 71288291 | 71288194 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71288052 | 71288094 | 71288052 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71287118 | 71287200 | 71287118 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71286965 | 71287029 | 71286965 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71285916 | 71285977 | 71285916 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71285135 | 71285194 | 71285135 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71284201 | 71284233 | 71284201 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71283785 | 71283850 | 71283785 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | CDS | 71283483 | 71283536 | 71283483 | ID=Msa0569430-mRNA-1:cds;Parent=Msa0569430-mRNA-1 |
| chr4_1 | three_prime_UTR | 71283189 | 71283482 | 71283189 | ID=Msa0569430-mRNA-1:three_prime_utr;Parent=Msa0569430-mRNA-1 |
| chr4_1 | three_prime_UTR | 71283109 | 71283166 | 71283109 | ID=Msa0569430-mRNA-1:three_prime_utr;Parent=Msa0569430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
