AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569540 MtrunA17_Chr8g0384511 92.179 179 14 0 1 179 1 179 4.31e-113 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569540 AT2G13440.1 88.350 103 12 0 77 179 73 175 7.41e-59 196

Find 227 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTCCAGGGCATTATTTC+TGG 0.116393 4_1:-71462194 Msa0569540:intron
ACTCAATGAAAGGTGAATTT+AGG 0.159488 4_1:-71462747 Msa0569540:three_prime_UTR
TTGAAAAGTGTCAAAATTTC+AGG 0.172651 4_1:-71461788 Msa0569540:intron
TTCTTCTCGGGTCAGATAAA+TGG 0.202098 4_1:-71462421 Msa0569540:three_prime_UTR
TCTCTTATCCATTGTAATTT+AGG 0.203640 4_1:-71462698 Msa0569540:intron
ACTCCTTTGGGTCGTGAAAT+TGG 0.211572 4_1:-71461881 Msa0569540:three_prime_UTR
TCCTTGAGCTTTCCTCCTTT+TGG 0.212482 4_1:+71459947 None:intergenic
TGCTCTTGCTTCTGCACGTT+TGG 0.233878 4_1:-71466914 Msa0569540:CDS
GTTGAATTGAAGCAAGTTAA+TGG 0.239536 4_1:-71462813 Msa0569540:three_prime_UTR
AGCCTCATCCGATGATAATT+AGG 0.268827 4_1:+71467421 None:intergenic
GAAACTGATCGGCTGAAAAC+TGG 0.282682 4_1:-71464626 Msa0569540:three_prime_UTR
GAAACACACCTTATCTTCTA+TGG 0.287758 4_1:+71463900 None:intergenic
TATCTCATTAGGAGGGGATT+TGG 0.309038 4_1:-71460930 Msa0569540:intron
TTTCCGTCTTATATGTCATT+TGG 0.312253 4_1:-71459607 Msa0569540:three_prime_UTR
ACATCTGTTCTCTTTCAATA+TGG 0.316185 4_1:+71464037 None:intergenic
TTGCATGAAACGCCCACTTA+TGG 0.316964 4_1:-71463961 Msa0569540:three_prime_UTR
CGACAGAAATGCAGAGTAAA+TGG 0.317901 4_1:+71467263 None:intergenic
TGACATGGTTGAGATGAAAT+TGG 0.322317 4_1:+71467292 None:intergenic
AATTATTAATAAGTTTCATT+TGG 0.324922 4_1:+71463192 None:intergenic
CATGGTCACTGATATCTTAC+TGG 0.330595 4_1:-71464837 Msa0569540:exon
GCTCTTGCTTCTGCACGTTT+GGG 0.340555 4_1:-71466913 Msa0569540:CDS
GATGGAACAAGGATGTAATT+TGG 0.341694 4_1:-71462835 Msa0569540:three_prime_UTR
TGAACGAGCTGGGACTTTGC+AGG 0.343602 4_1:+71466363 None:intergenic
TGATAGCCGTCTCACTCCTT+TGG 0.343963 4_1:-71461894 Msa0569540:three_prime_UTR
GCAAGTTATCTCTAATTATC+TGG 0.345394 4_1:+71463980 None:intergenic
AGAAATGTGTAATTTGATCT+TGG 0.347682 4_1:-71459675 Msa0569540:three_prime_UTR
GCATAGTAATCCAGGTCTTC+AGG 0.348133 4_1:+71460527 None:intergenic
CTCAATGAAAGGTGAATTTA+GGG 0.349551 4_1:-71462746 Msa0569540:three_prime_UTR
CATTGACAGGATTGCGTGGC+AGG 0.350822 4_1:-71466863 Msa0569540:intron
GCCTCATCCGATGATAATTA+GGG 0.354443 4_1:+71467422 None:intergenic
GATGAAATTGGGAGATGAAT+AGG 0.355107 4_1:+71467304 None:intergenic
TACGTGCTCAGACTGATAAA+AGG 0.360569 4_1:-71465449 Msa0569540:CDS
CTTCTTGATAAGCATGGTTT+TGG 0.360839 4_1:-71460818 Msa0569540:three_prime_UTR
AAGAAACCGCACATACAATA+TGG 0.372023 4_1:-71460842 Msa0569540:three_prime_UTR
TGACAAGAATTTATCAAGAA+TGG 0.376896 4_1:-71460795 Msa0569540:three_prime_UTR
CCTTTGCTGAGAACTTTGCC+TGG 0.379636 4_1:-71462550 Msa0569540:three_prime_UTR
ATTCGGACTGTAGATTTCTC+TGG 0.385158 4_1:-71464584 Msa0569540:three_prime_UTR
GATATAATATTTAAATACTA+TGG 0.385702 4_1:-71463136 Msa0569540:three_prime_UTR
CAGGTACATATATTTGTTGC+AGG 0.390247 4_1:+71463040 None:intergenic
GATAGCCGTCTCACTCCTTT+GGG 0.391537 4_1:-71461893 Msa0569540:three_prime_UTR
ATCTTATAGGGGTTCTCAAC+CGG 0.395502 4_1:-71462595 Msa0569540:intron
TTCTTACTCTCAACATTGAC+AGG 0.395986 4_1:-71466876 Msa0569540:CDS
AGGGCAGTATCTAGGTCCTT+TGG 0.399442 4_1:+71463924 None:intergenic
AAAAGCTACAAAATCATAGA+TGG 0.399707 4_1:-71459779 Msa0569540:three_prime_UTR
ATCATCGGATGAGGCTGCTT+TGG 0.400554 4_1:-71467414 Msa0569540:five_prime_UTR
AAACTTCAGGCTCCTCATCT+TGG 0.401204 4_1:+71459883 None:intergenic
TTCAACCCATCCTCCATAAG+TGG 0.414051 4_1:+71463948 None:intergenic
TTCATAATTGGCAGGTCAGC+TGG 0.417540 4_1:-71464080 Msa0569540:intron
TCTCTTTCAATATGGACATC+TGG 0.418435 4_1:+71464045 None:intergenic
GTTTCAGTCAAAGAAACTTC+AGG 0.419087 4_1:+71459870 None:intergenic
TCATCAAATATTTCTTGAAC+CGG 0.420952 4_1:-71463278 Msa0569540:three_prime_UTR
GGAGAAAGTGGAGGCGGAAA+AGG 0.426066 4_1:+71467139 None:intergenic
GACTCGCCAGCTCTCCCTGC+GGG 0.426682 4_1:+71464692 None:intergenic
AAGTTCTCATTGTCGTTCGC+TGG 0.428570 4_1:+71467336 None:intergenic
GAGTTGTTCGTCGGAAATTG+AGG 0.428770 4_1:+71467174 None:intergenic
AATGAGTAGTGCAGTGATAT+CGG 0.429661 4_1:+71459980 None:intergenic
TTGACTGAAACAGCTAGATC+TGG 0.429758 4_1:-71459858 Msa0569540:three_prime_UTR
AGGACCTGCGAGAGCCTTAC+CGG 0.431505 4_1:-71462076 Msa0569540:three_prime_UTR
AATCAACAAAATAATAGTTA+AGG 0.435965 4_1:-71463097 Msa0569540:three_prime_UTR
TAGCACTAGTAGTACGAGTT+AGG 0.437053 4_1:+71464007 None:intergenic
GCCTCTCGAATAGAAAGGTT+TGG 0.437247 4_1:+71464860 None:intergenic
GTATGTGCGGTTTCTTAAGA+AGG 0.439711 4_1:+71460849 None:intergenic
GCACAGATAAATATCAAAAT+CGG 0.441890 4_1:+71459813 None:intergenic
CGTGTACTCAATTCTTCAAA+AGG 0.443291 4_1:-71465489 Msa0569540:CDS
TCAGCAAAGCCAACTTCAAC+AGG 0.445803 4_1:-71460723 Msa0569540:intron
GTAAGGCTCTCGCAGGTCCT+TGG 0.446878 4_1:+71462079 None:intergenic
GACCTAGAGCATTGATGAGC+AGG 0.447046 4_1:+71462472 None:intergenic
CTGCCCTTCCATAGAAGATA+AGG 0.448701 4_1:-71463908 Msa0569540:intron
CTCCAGCCCGAGTGGACATT+CGG 0.448948 4_1:-71464601 Msa0569540:three_prime_UTR
CTCGCCTGACCAATGGTTTG+AGG 0.449157 4_1:+71460026 None:intergenic
AACTTCAGGCTCCTCATCTT+GGG 0.449927 4_1:+71459884 None:intergenic
ATACAAGGATTGTTCTTCTC+GGG 0.451776 4_1:-71462433 Msa0569540:three_prime_UTR
TCTATGCCCGCAGGGAGAGC+TGG 0.453999 4_1:-71464698 Msa0569540:three_prime_UTR
TGATAAAAGGGAATATGCTT+TGG 0.457766 4_1:-71465436 Msa0569540:intron
AATACAAGGATTGTTCTTCT+CGG 0.458517 4_1:-71462434 Msa0569540:three_prime_UTR
TTTGATGAGACTCTTTGTCT+TGG 0.460619 4_1:+71463293 None:intergenic
TTTGCAGGCGCACCAACTGC+TGG 0.468066 4_1:+71466378 None:intergenic
GCATCACCGTGTCTTAAAAC+AGG 0.472066 4_1:+71463021 None:intergenic
CTGTAGTCTCTCAGGCAAAC+CGG 0.472181 4_1:+71462576 None:intergenic
AAAGGCAACTGTAGTCTCTC+AGG 0.474416 4_1:+71462568 None:intergenic
ACATAGGGAAAATTGCTGAT+AGG 0.475287 4_1:-71466317 Msa0569540:intron
CTATGAAGAAGCTGCAGCAC+AGG 0.479361 4_1:-71462389 Msa0569540:intron
CGTACCTCGGGAGGAGGAAG+CGG 0.480416 4_1:+71467094 None:intergenic
ATAGATTGACAGAGAGGAAA+AGG 0.480473 4_1:-71459756 Msa0569540:three_prime_UTR
AAATATGATGTGATTGTAGT+TGG 0.484063 4_1:-71466961 Msa0569540:CDS
GAGAGAGAGAGCAGTTACAT+AGG 0.486318 4_1:-71462125 Msa0569540:three_prime_UTR
AAATTGGATTGATAGATGAT+AGG 0.488648 4_1:-71461865 Msa0569540:three_prime_UTR
TAATCCAGGTCTTCAGGAAG+TGG 0.489976 4_1:+71460533 None:intergenic
AATTACATCCTTGTTCCATC+AGG 0.490352 4_1:+71462838 None:intergenic
TAGGTTAGGCCTCAAACCAT+TGG 0.494962 4_1:-71460035 Msa0569540:three_prime_UTR
ACTGAGAACTTACAGCAACT+TGG 0.495886 4_1:-71464653 Msa0569540:three_prime_UTR
GCTGAAATTACTGTTATGTC+TGG 0.496108 4_1:-71460905 Msa0569540:three_prime_UTR
GGAAGAACCTCTTCATCTCC+AGG 0.497914 4_1:+71464548 None:intergenic
AAATCCGAGCCTGCTTCTCC+TGG 0.498604 4_1:+71461828 None:intergenic
GTCCGAATGTCCACTCGGGC+TGG 0.501377 4_1:+71464599 None:intergenic
AGCTCTCCCTGCGGGCATAG+AGG 0.501442 4_1:+71464700 None:intergenic
AGTAGTGCAGTGATATCGGC+AGG 0.501461 4_1:+71459984 None:intergenic
TCTATGGAAGGGCAGTATCT+AGG 0.501684 4_1:+71463916 None:intergenic
CTACAGTCCGAATGTCCACT+CGG 0.501786 4_1:+71464594 None:intergenic
CCTTTCTATTCGAGAGGCCA+TGG 0.501995 4_1:-71464855 Msa0569540:CDS
TTATCATTGCATAGTAATCC+AGG 0.502501 4_1:+71460519 None:intergenic
GAAATTGTACCAGGAGAAGC+AGG 0.506810 4_1:-71461837 Msa0569540:three_prime_UTR
TAGGCCTCAAACCATTGGTC+AGG 0.506876 4_1:-71460030 Msa0569540:three_prime_UTR
GGAGAAGCGACGGGAGAAAG+TGG 0.510743 4_1:+71467127 None:intergenic
AGAAGAGTGATAGATGAAGT+AGG 0.515825 4_1:+71467209 None:intergenic
GACATGGTTGAGATGAAATT+GGG 0.516065 4_1:+71467293 None:intergenic
ACGTGCTCAGACTGATAAAA+GGG 0.516334 4_1:-71465448 Msa0569540:CDS
ATAGTCATCAATCGCAAAAG+TGG 0.518762 4_1:-71463068 Msa0569540:three_prime_UTR
TAGCGTACCTTGTTAACATC+CGG 0.521224 4_1:+71462057 None:intergenic
GATTGATAGATGATAGGCGT+TGG 0.521496 4_1:-71461859 Msa0569540:three_prime_UTR
GCACCAACTGCTGGATTACA+AGG 0.522131 4_1:+71466387 None:intergenic
GTCCCAGCTCGTTCATGAAG+TGG 0.523005 4_1:-71466355 Msa0569540:CDS
TCAGGCACATCTCGACCCTC+CGG 0.523287 4_1:+71463259 None:intergenic
AACTATCGTACCTCGGGAGG+AGG 0.524540 4_1:+71467088 None:intergenic
TACTCTGCTCGCCTGACCAA+TGG 0.524690 4_1:+71460019 None:intergenic
AAACGCCCACTTATGGAGGA+TGG 0.525613 4_1:-71463954 Msa0569540:three_prime_UTR
AATGTGTAATTTGATCTTGG+AGG 0.529183 4_1:-71459672 Msa0569540:three_prime_UTR
GTCCACTTCATGAACGAGCT+GGG 0.531202 4_1:+71466353 None:intergenic
ATGGTCACTGATATCTTACT+GGG 0.533339 4_1:-71464836 Msa0569540:exon
GGTCAGATAAATGGAACTAC+AGG 0.534465 4_1:-71462412 Msa0569540:three_prime_UTR
TTGAAAACTGTTCAATGTTG+AGG 0.535553 4_1:-71462525 Msa0569540:three_prime_UTR
TTCAAATATATATTTCGACT+TGG 0.536512 4_1:+71462770 None:intergenic
TCATATTCCACAGCATATGC+AGG 0.537782 4_1:+71462502 None:intergenic
TGCTTTGGTTAACAAAGCAA+CGG 0.539307 4_1:-71467399 Msa0569540:five_prime_UTR
GACGCGCTTGGTGGTGACAT+AGG 0.540560 4_1:-71466333 Msa0569540:CDS
CGTCCACTTCATGAACGAGC+TGG 0.540963 4_1:+71466352 None:intergenic
GCACGTAAAGCACGAACTGC+AGG 0.542126 4_1:+71465465 None:intergenic
GGAAAAGGAACTGTTTGTAG+TGG 0.542332 4_1:-71459741 Msa0569540:three_prime_UTR
GTTCATGAAGTGGACGCGCT+TGG 0.542645 4_1:-71466345 Msa0569540:CDS
ACGGACATACCTGTTGAAGT+TGG 0.544160 4_1:+71460714 None:intergenic
CATGAAGTGGACGCGCTTGG+TGG 0.544294 4_1:-71466342 Msa0569540:CDS
TCAAATATTTCTTGAACCGG+AGG 0.549373 4_1:-71463275 Msa0569540:three_prime_UTR
ACGCGCTTGGTGGTGACATA+GGG 0.550505 4_1:-71466332 Msa0569540:CDS
GGAGGAAGCGGATGCGACGG+TGG 0.552040 4_1:+71467106 None:intergenic
TCATTGAGCTCGAAGCCAAA+AGG 0.552850 4_1:-71459962 Msa0569540:three_prime_UTR
ATGAGTGGTAAAATATGGGT+TGG 0.553295 4_1:-71464728 Msa0569540:three_prime_UTR
CCCCTAATTATCATCGGATG+AGG 0.555084 4_1:-71467423 Msa0569540:five_prime_UTR
ATTGCTCATACCTCAGATGT+AGG 0.558894 4_1:+71462974 None:intergenic
CGTCGGAAATTGAGGGAAGG+AGG 0.560938 4_1:+71467182 None:intergenic
TATGGACTTCTTGATAAGCA+TGG 0.561182 4_1:-71460824 Msa0569540:three_prime_UTR
GGTAGAACCTCTATGCCCGC+AGG 0.561240 4_1:-71464707 Msa0569540:three_prime_UTR
TAGCCTTGTAATCCAGCAGT+TGG 0.562033 4_1:-71466390 Msa0569540:CDS
ATTGGTCAGGCGAGCAGAGT+AGG 0.562350 4_1:-71460017 Msa0569540:three_prime_UTR
TACCTTGTTAACATCCGGTA+AGG 0.563074 4_1:+71462062 None:intergenic
CTTATGACTAAGAAAATACA+AGG 0.563517 4_1:-71462448 Msa0569540:three_prime_UTR
AGTAAATGGCACCGTTGACA+TGG 0.564413 4_1:+71467277 None:intergenic
GAAATTGATATTAAGTACGA+AGG 0.565120 4_1:-71460758 Msa0569540:three_prime_UTR
AGGCGGAAAAGGAGATTCTC+CGG 0.565257 4_1:+71467150 None:intergenic
TATATTTGAAACTCAATGAA+AGG 0.565670 4_1:-71462757 Msa0569540:three_prime_UTR
TAAACCACTTCCTGAAGACC+TGG 0.566712 4_1:-71460537 Msa0569540:three_prime_UTR
GGAGGAGGAAGCGGATGCGA+CGG 0.568114 4_1:+71467103 None:intergenic
ATCTCAACCTGGAGATGAAG+AGG 0.569238 4_1:-71464555 Msa0569540:intron
CACACCTTATCTTCTATGGA+AGG 0.572859 4_1:+71463904 None:intergenic
CCATGGCCTCTCGAATAGAA+AGG 0.572941 4_1:+71464855 None:intergenic
ATGCGACGGTGGAGAAGCGA+CGG 0.574027 4_1:+71467117 None:intergenic
GCGACGGGAGAAAGTGGAGG+CGG 0.574342 4_1:+71467133 None:intergenic
CCCGTGGTGAGAATGACTGA+TGG 0.577256 4_1:+71464758 None:intergenic
TTCTCATTGTCGTTCGCTGG+AGG 0.577869 4_1:+71467339 None:intergenic
TGTACCAGGAGAAGCAGGCT+CGG 0.581258 4_1:-71461832 Msa0569540:three_prime_UTR
GTCAGGCGAGCAGAGTAGGT+GGG 0.582607 4_1:-71460013 Msa0569540:three_prime_UTR
TAGGCGTTGGAAATTGTACC+AGG 0.582824 4_1:-71461846 Msa0569540:three_prime_UTR
AGTTGTTCGTCGGAAATTGA+GGG 0.582943 4_1:+71467175 None:intergenic
TATTTAGCCGCTCAGAGCAT+CGG 0.583046 4_1:-71461940 Msa0569540:intron
CATGAAACGCCCACTTATGG+AGG 0.583933 4_1:-71463958 Msa0569540:three_prime_UTR
CTTACTTGCACATAGAGCTC+AGG 0.584501 4_1:+71463241 None:intergenic
CGCTGGAGGCAAATGTGAAG+CGG 0.585688 4_1:+71467353 None:intergenic
TTTCCAAATGACATATAAGA+CGG 0.585842 4_1:+71459604 None:intergenic
CCATCAGTCATTCTCACCAC+GGG 0.588790 4_1:-71464758 Msa0569540:three_prime_UTR
TCCAAACCTTTCTATTCGAG+AGG 0.588800 4_1:-71464861 Msa0569540:CDS
CTAACGCCCCTAATTATCAT+CGG 0.591068 4_1:-71467429 Msa0569540:five_prime_UTR
TTCTCCGGTGAGTTGTTCGT+CGG 0.592354 4_1:+71467165 None:intergenic
CCAGGCAAAGTTCTCAGCAA+AGG 0.594246 4_1:+71462550 None:intergenic
TGCGACGGTGGAGAAGCGAC+GGG 0.595054 4_1:+71467118 None:intergenic
TACCTGCTCATCAATGCTCT+AGG 0.597099 4_1:-71462474 Msa0569540:three_prime_UTR
TCAGGCGAGCAGAGTAGGTG+GGG 0.598429 4_1:-71460012 Msa0569540:three_prime_UTR
AAATATCAAAATCGGTAGAG+TGG 0.599923 4_1:+71459821 None:intergenic
TCTGGATTAGAATCTCAACC+TGG 0.600730 4_1:-71464566 Msa0569540:three_prime_UTR
ATTTCCGACGAACAACTCAC+CGG 0.601864 4_1:-71467169 Msa0569540:CDS
GGTCAGGCGAGCAGAGTAGG+TGG 0.602163 4_1:-71460014 Msa0569540:three_prime_UTR
AACTGGAACTCCAGCCCGAG+TGG 0.606428 4_1:-71464609 Msa0569540:three_prime_UTR
CTGACTCAACCCACCCCGAA+GGG 0.607621 4_1:+71463158 None:intergenic
ACATCCGGTAAGGCTCTCGC+AGG 0.608313 4_1:+71462072 None:intergenic
AACGCCCACTTATGGAGGAT+GGG 0.608525 4_1:-71463953 Msa0569540:three_prime_UTR
GCTGGCGAGTCTGCTTCACA+TGG 0.608935 4_1:-71464680 Msa0569540:three_prime_UTR
AGAAGTCCATATTGTATGTG+CGG 0.613059 4_1:+71460836 None:intergenic
GTCGGAAATTGAGGGAAGGA+GGG 0.614136 4_1:+71467183 None:intergenic
CAAATATTTCTTGAACCGGA+GGG 0.614402 4_1:-71463274 Msa0569540:three_prime_UTR
TTTCATCTCAACCATGTCAA+CGG 0.616822 4_1:-71467288 Msa0569540:exon
TCAACCCATCCTCCATAAGT+GGG 0.617248 4_1:+71463949 None:intergenic
GATGTGATTGTAGTTGGAGG+AGG 0.617335 4_1:-71466955 Msa0569540:CDS
AGCCTTACCGGATGTTAACA+AGG 0.617788 4_1:-71462064 Msa0569540:intron
GCCAAAAGGAGGAAAGCTCA+AGG 0.618296 4_1:-71459948 Msa0569540:three_prime_UTR
ACCACTCATAAAAGTTCCCG+TGG 0.623171 4_1:+71464742 None:intergenic
CAGTAAGATATCAGTGACCA+TGG 0.625171 4_1:+71464838 None:intergenic
AGAAACTATCGTACCTCGGG+AGG 0.628169 4_1:+71467085 None:intergenic
TATGATGTGATTGTAGTTGG+AGG 0.629455 4_1:-71466958 Msa0569540:CDS
ACACCTTATCTTCTATGGAA+GGG 0.630410 4_1:+71463905 None:intergenic
AATCCAATTTCACGACCCAA+AGG 0.632364 4_1:+71461878 None:intergenic
TTGAGCTCGAAGCCAAAAGG+AGG 0.634708 4_1:-71459959 Msa0569540:three_prime_UTR
GGAGGATGGGTTGAAGCCAA+AGG 0.635736 4_1:-71463940 Msa0569540:three_prime_UTR
TCAAGCTAATACCCAAGATG+AGG 0.637475 4_1:-71459895 Msa0569540:three_prime_UTR
GAAGCAGGCTCGGATTTCTG+AGG 0.639153 4_1:-71461822 Msa0569540:three_prime_UTR
TAAATTACAATGGATAAGAG+AGG 0.639246 4_1:+71462700 None:intergenic
AGACTCGCCAGCTCTCCCTG+CGG 0.641108 4_1:+71464691 None:intergenic
GTTCGTCGGAAATTGAGGGA+AGG 0.642788 4_1:+71467179 None:intergenic
TACAGTCCGAATGTCCACTC+GGG 0.642947 4_1:+71464595 None:intergenic
TCTGACTCAACCCACCCCGA+AGG 0.643636 4_1:+71463157 None:intergenic
GTAGAAGCATCCTACATCTG+AGG 0.646474 4_1:-71462984 Msa0569540:intron
GTAGTTGGAGGAGGACACGC+TGG 0.648135 4_1:-71466946 Msa0569540:CDS
GGAAAGCTCAAGGACAGAGG+AGG 0.648717 4_1:-71459938 Msa0569540:three_prime_UTR
CACGACCCAAAGGAGTGAGA+CGG 0.651338 4_1:+71461888 None:intergenic
GGAGGAAAGCTCAAGGACAG+AGG 0.651565 4_1:-71459941 Msa0569540:three_prime_UTR
AACGCTGCTAGACATGCAGA+TGG 0.655157 4_1:-71462167 Msa0569540:three_prime_UTR
GAAGCGACGGGAGAAAGTGG+AGG 0.656002 4_1:+71467130 None:intergenic
TCCATCAGTCATTCTCACCA+CGG 0.656267 4_1:-71464759 Msa0569540:three_prime_UTR
AGATGGATAGATTGACAGAG+AGG 0.657489 4_1:-71459762 Msa0569540:three_prime_UTR
GTAGAACCTCTATGCCCGCA+GGG 0.666626 4_1:-71464706 Msa0569540:three_prime_UTR
GCATCCGCTTCCTCCTCCCG+AGG 0.682837 4_1:-71467098 Msa0569540:intron
AATTGATGATCTAGTCACCA+AGG 0.684915 4_1:-71462096 Msa0569540:three_prime_UTR
GTTGAGGCCTGCATATGCTG+TGG 0.690407 4_1:-71462509 Msa0569540:three_prime_UTR
CCTCATCCGATGATAATTAG+GGG 0.692149 4_1:+71467423 None:intergenic
TCAACATTGACAGGATTGCG+TGG 0.693150 4_1:-71466867 Msa0569540:CDS
GGGAAGAATGACAATGTGGA+AGG 0.698671 4_1:-71464815 Msa0569540:three_prime_UTR
GTAGTGCAGTGATATCGGCA+GGG 0.712492 4_1:+71459985 None:intergenic
AAAGTAACCGATGCTCTGAG+CGG 0.714631 4_1:+71461933 None:intergenic
ACTGGGGAAGAATGACAATG+TGG 0.726022 4_1:-71464819 Msa0569540:three_prime_UTR
TGGTCACTGATATCTTACTG+GGG 0.750479 4_1:-71464835 Msa0569540:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTAATCATATTTTTA+TGG + chr4_1:71461814-71461833 None:intergenic 10.0%
!! TAATATGTATACTAATAATT+AGG - chr4_1:71461867-71461886 Msa0569540:three_prime_UTR 10.0%
!!! ATAAAAAGAAAATTGATAAT+GGG + chr4_1:71462639-71462658 None:intergenic 10.0%
!! AATTATTAATAAGTTTCATT+TGG + chr4_1:71463858-71463877 None:intergenic 10.0%
!! GATATAATATTTAAATACTA+TGG - chr4_1:71463911-71463930 Msa0569540:three_prime_UTR 10.0%
!!! AAATCAAATAAATTTTCTTT+TGG + chr4_1:71466069-71466088 None:intergenic 10.0%
!!! CGTTTTAATTAAATTGAATT+AGG - chr4_1:71460329-71460348 Msa0569540:intron 15.0%
!! ATAAAATACTTTATTCTGAT+TGG + chr4_1:71460402-71460421 None:intergenic 15.0%
!! TTAAAATACAGTTACAAAAT+TGG - chr4_1:71460434-71460453 Msa0569540:intron 15.0%
!!! CAATAATTTTATGAGTTTAA+TGG + chr4_1:71460528-71460547 None:intergenic 15.0%
!! CATTAAACTCATAAAATTAT+TGG - chr4_1:71460526-71460545 Msa0569540:three_prime_UTR 15.0%
!!! ATAGAAATGATTTAAAGTTA+AGG - chr4_1:71461189-71461208 Msa0569540:intron 15.0%
!!! TAGAAATGATTTAAAGTTAA+GGG - chr4_1:71461190-71461209 Msa0569540:intron 15.0%
!! AAAAAAAAAGTGAAATATCT+CGG - chr4_1:71461321-71461340 Msa0569540:intron 15.0%
!! TATTCGAATTAAAAACAAAT+TGG + chr4_1:71461372-71461391 None:intergenic 15.0%
!!! ATATAATATATTTTGAAGTG+TGG - chr4_1:71461472-71461491 Msa0569540:intron 15.0%
!! CATAAAAAGAAAATTGATAA+TGG + chr4_1:71462640-71462659 None:intergenic 15.0%
!!! CATATTTTAAAAAGTTAACT+TGG - chr4_1:71463187-71463206 Msa0569540:three_prime_UTR 15.0%
!!! TTAACTTGGTTTAATATTTA+GGG - chr4_1:71463201-71463220 Msa0569540:three_prime_UTR 15.0%
!! TTTAAAAACTTACTGAAATA+AGG + chr4_1:71463325-71463344 None:intergenic 15.0%
!!! AGTATTCTTAATTTTATAAG+GGG + chr4_1:71463621-71463640 None:intergenic 15.0%
!!! GAGTATTCTTAATTTTATAA+GGG + chr4_1:71463622-71463641 None:intergenic 15.0%
!!! TGAGTATTCTTAATTTTATA+AGG + chr4_1:71463623-71463642 None:intergenic 15.0%
!! AATCAACAAAATAATAGTTA+AGG - chr4_1:71463950-71463969 Msa0569540:three_prime_UTR 15.0%
!! TTACTACATTATTCTATAAT+AGG + chr4_1:71465479-71465498 None:intergenic 15.0%
!!! ATATGTTTTTTTTATCTAGT+AGG - chr4_1:71466042-71466061 Msa0569540:intron 15.0%
!!! TATTTTTTTTGTTGCAGATT+TGG - chr4_1:71460043-71460062 Msa0569540:intron 20.0%
!! TAAAATAAGATGCATAGATT+TGG + chr4_1:71460239-71460258 None:intergenic 20.0%
!! ACATTTCAAATTACAAAAAC+TGG + chr4_1:71460265-71460284 None:intergenic 20.0%
!! GTTTAATGGAAATAAATACA+CGG + chr4_1:71460514-71460533 None:intergenic 20.0%
!!! TTTTGTTTTTCTTTTCTGTT+AGG - chr4_1:71460963-71460982 Msa0569540:intron 20.0%
!!! TTTGTTTTTCTTTTCTGTTA+GGG - chr4_1:71460964-71460983 Msa0569540:intron 20.0%
!! AAGATGTTATAATACTTCAA+GGG + chr4_1:71460994-71461013 None:intergenic 20.0%
!! AAAGATGTTATAATACTTCA+AGG + chr4_1:71460995-71461014 None:intergenic 20.0%
!!! TTATAACATCTTTTAGACAA+AGG - chr4_1:71461002-71461021 Msa0569540:intron 20.0%
!!! AAGCATAATTTTGAGTTATT+GGG + chr4_1:71461110-71461129 None:intergenic 20.0%
!!! AAAGCATAATTTTGAGTTAT+TGG + chr4_1:71461111-71461130 None:intergenic 20.0%
!!! TTTCAAGTAAGTTATTCTTA+AGG - chr4_1:71461128-71461147 Msa0569540:intron 20.0%
!!! AGAAATGATTTAAAGTTAAG+GGG - chr4_1:71461191-71461210 Msa0569540:intron 20.0%
!!! TTTTCATCTTCAAACATAAA+AGG + chr4_1:71461305-71461324 None:intergenic 20.0%
!!! TAAAAACAAATTGGTTAGTT+TGG + chr4_1:71461363-71461382 None:intergenic 20.0%
!! TAATGAAAAATGTAGTAGAA+AGG - chr4_1:71461634-71461653 Msa0569540:intron 20.0%
!!! TTTTATGAGTGGTAAAATAT+GGG - chr4_1:71462315-71462334 Msa0569540:intron 20.0%
!! TTCCATTTAATCTTATATGT+AGG - chr4_1:71462518-71462537 Msa0569540:three_prime_UTR 20.0%
!! AACCTACATATAAGATTAAA+TGG + chr4_1:71462523-71462542 None:intergenic 20.0%
!! TATCATAAACACTATTTGAA+CGG + chr4_1:71462560-71462579 None:intergenic 20.0%
!! CAAATAGTGTTTATGATATT+TGG - chr4_1:71462562-71462581 Msa0569540:three_prime_UTR 20.0%
!!! TTATGATATTTGGCTTTAAA+TGG - chr4_1:71462572-71462591 Msa0569540:three_prime_UTR 20.0%
!! TTAGTTGTATCAAAATTACT+AGG + chr4_1:71462670-71462689 None:intergenic 20.0%
!!! GTAATTTTGATACAACTAAA+AGG - chr4_1:71462671-71462690 Msa0569540:intron 20.0%
!!! GTTAACTTGGTTTAATATTT+AGG - chr4_1:71463200-71463219 Msa0569540:three_prime_UTR 20.0%
!! TAACTTGGTTTAATATTTAG+GGG - chr4_1:71463202-71463221 Msa0569540:three_prime_UTR 20.0%
!! TTACAGTAAAGATAGAATTT+GGG + chr4_1:71463412-71463431 None:intergenic 20.0%
!!! GTATTCTTAATTTTATAAGG+GGG + chr4_1:71463620-71463639 None:intergenic 20.0%
!!! AATTTTTCATTTTTTCCCTT+CGG - chr4_1:71463874-71463893 Msa0569540:intron 20.0%
!! AAAAAGGATATAACAAGATT+TGG + chr4_1:71464101-71464120 None:intergenic 20.0%
!! AAAATTTCTATCAGTTTATC+AGG + chr4_1:71464127-71464146 None:intergenic 20.0%
!! TTCAAATATATATTTCGACT+TGG + chr4_1:71464280-71464299 None:intergenic 20.0%
!!! TATATTTGAAACTCAATGAA+AGG - chr4_1:71464290-71464309 Msa0569540:intron 20.0%
!! TTATTCTTCTTCTATCTTAT+AGG - chr4_1:71464439-71464458 Msa0569540:intron 20.0%
!! TATTCTTCTTCTATCTTATA+GGG - chr4_1:71464440-71464459 Msa0569540:intron 20.0%
!! AAAACTTACACATAATTAGT+TGG + chr4_1:71465310-71465329 None:intergenic 20.0%
!!! GTGTAAGTTTTTTCTTTAAA+AGG - chr4_1:71465319-71465338 Msa0569540:intron 20.0%
!! AATGAAAAAAGTTTATCCTT+TGG - chr4_1:71465343-71465362 Msa0569540:intron 20.0%
!! ATGAAAAAAGTTTATCCTTT+GGG - chr4_1:71465344-71465363 Msa0569540:intron 20.0%
!! AATATATGATCTATGTCTTA+AGG + chr4_1:71465870-71465889 None:intergenic 20.0%
!! CATATAACAATAATCTGTAT+TGG + chr4_1:71465894-71465913 None:intergenic 20.0%
!! ATTTATCAACATAGACAATT+TGG - chr4_1:71466597-71466616 Msa0569540:intron 20.0%
!! ACAATTTCATAACATAGATT+AGG + chr4_1:71466862-71466881 None:intergenic 20.0%
!!! TTGATTTCAACTTATTTTCA+AGG - chr4_1:71466964-71466983 Msa0569540:CDS 20.0%
!!! TTGTAGCTTTTATATTTCAT+AGG + chr4_1:71467259-71467278 None:intergenic 20.0%
! AAATATGATGTGATTGTAGT+TGG - chr4_1:71460086-71460105 Msa0569540:intron 25.0%
!! AGTTACAAAATTGGCTTATT+TGG - chr4_1:71460443-71460462 Msa0569540:intron 25.0%
!! GGCAATATGATAAATTTTAC+TGG - chr4_1:71460464-71460483 Msa0569540:intron 25.0%
!!! TCAGAAACTTCTCATTTTTT+AGG + chr4_1:71460619-71460638 None:intergenic 25.0%
!!! TTGTTTTTCTTTTCTGTTAG+GGG - chr4_1:71460965-71460984 Msa0569540:intron 25.0%
!!! TTTTGAGTTATTGGGAAATT+GGG + chr4_1:71461102-71461121 None:intergenic 25.0%
!!! ATTTTGAGTTATTGGGAAAT+TGG + chr4_1:71461103-71461122 None:intergenic 25.0%
!! ATTTAAAGTTAAGGGGAAAA+TGG - chr4_1:71461198-71461217 Msa0569540:intron 25.0%
!! ATATTATGAGTGTTAGTCTA+GGG + chr4_1:71461853-71461872 None:intergenic 25.0%
!!! TTACAGAGTTAGTCTTATAA+CGG + chr4_1:71461931-71461950 None:intergenic 25.0%
! TATAAGACTAACTCTGTAAT+AGG - chr4_1:71461932-71461951 Msa0569540:three_prime_UTR 25.0%
! TTGCTTTATAACTTGAAAGT+TGG - chr4_1:71461998-71462017 Msa0569540:intron 25.0%
! ATGTAGATTTGAAGATATCA+AGG + chr4_1:71462073-71462092 None:intergenic 25.0%
! TGATATCTTCAAATCTACAT+TGG - chr4_1:71462073-71462092 Msa0569540:three_prime_UTR 25.0%
! AAGTCAAAGCAAAATAAGAT+GGG + chr4_1:71462151-71462170 None:intergenic 25.0%
! AAAGTCAAAGCAAAATAAGA+TGG + chr4_1:71462152-71462171 None:intergenic 25.0%
!! CTTTTATGAGTGGTAAAATA+TGG - chr4_1:71462314-71462333 Msa0569540:intron 25.0%
!!! TTAACGCATCATAATTTGTT+GGG + chr4_1:71462832-71462851 None:intergenic 25.0%
!! TTTAACGCATCATAATTTGT+TGG + chr4_1:71462833-71462852 None:intergenic 25.0%
!!! TTTTTGATTTTGCTACAGTA+TGG - chr4_1:71462863-71462882 Msa0569540:three_prime_UTR 25.0%
!! AAAGCTTTTACTCTGTAAAA+CGG - chr4_1:71462921-71462940 Msa0569540:intron 25.0%
! AACTTGGTTTAATATTTAGG+GGG - chr4_1:71463203-71463222 Msa0569540:three_prime_UTR 25.0%
! GCATTTGGAAAAGTTTATTT+GGG - chr4_1:71463225-71463244 Msa0569540:three_prime_UTR 25.0%
! CTTACAGTAAAGATAGAATT+TGG + chr4_1:71463413-71463432 None:intergenic 25.0%
! TCATCAAATATTTCTTGAAC+CGG - chr4_1:71463769-71463788 Msa0569540:intron 25.0%
!!! ATTTTTCATTTTTTCCCTTC+GGG - chr4_1:71463875-71463894 Msa0569540:intron 25.0%
! TCAGTTTATCAGGTTAAAAA+AGG + chr4_1:71464117-71464136 None:intergenic 25.0%
! TAAATTACAATGGATAAGAG+AGG + chr4_1:71464350-71464369 None:intergenic 25.0%
! TCTCTTATCCATTGTAATTT+AGG - chr4_1:71464349-71464368 Msa0569540:intron 25.0%
! TTATCCATTGTAATTTAGGT+GGG - chr4_1:71464353-71464372 Msa0569540:intron 25.0%
! ATTCTTCTTCTATCTTATAG+GGG - chr4_1:71464441-71464460 Msa0569540:intron 25.0%
! CTTATGACTAAGAAAATACA+AGG - chr4_1:71464599-71464618 Msa0569540:three_prime_UTR 25.0%
! GAAAGAAAAAAAAAGCAATC+AGG + chr4_1:71464723-71464742 None:intergenic 25.0%
! TAAGCTCTTATTATTTATGC+TGG - chr4_1:71464783-71464802 Msa0569540:three_prime_UTR 25.0%
! AAAAGACTTACTATATTAGC+AGG + chr4_1:71464812-71464831 None:intergenic 25.0%
! TATTATCGAGAAATGAGAAA+TGG + chr4_1:71465063-71465082 None:intergenic 25.0%
! AAATTGGATTGATAGATGAT+AGG - chr4_1:71465182-71465201 Msa0569540:intron 25.0%
!!! TTGAAAAGTGTCAAAATTTC+AGG - chr4_1:71465259-71465278 Msa0569540:intron 25.0%
! TGAAAAAAGTTTATCCTTTG+GGG - chr4_1:71465345-71465364 Msa0569540:intron 25.0%
! GATTATTGTTATATGCACAA+TGG - chr4_1:71465899-71465918 Msa0569540:intron 25.0%
! TGACAAGAATTTATCAAGAA+TGG - chr4_1:71466252-71466271 Msa0569540:intron 25.0%
! GAAATTGATATTAAGTACGA+AGG - chr4_1:71466289-71466308 Msa0569540:intron 25.0%
! GATAAATATGTTACATACCT+TGG + chr4_1:71466584-71466603 None:intergenic 25.0%
! GTTTAGTAATGACGAAAAAA+AGG - chr4_1:71466669-71466688 Msa0569540:intron 25.0%
!! AGATACTTTGACATTTCTTT+TGG + chr4_1:71466800-71466819 None:intergenic 25.0%
! TATTGAATGTGTATTCTACA+AGG - chr4_1:71466832-71466851 Msa0569540:intron 25.0%
! GCACAGATAAATATCAAAAT+CGG + chr4_1:71467237-71467256 None:intergenic 25.0%
! AAAAGCTACAAAATCATAGA+TGG - chr4_1:71467268-71467287 Msa0569540:CDS 25.0%
! AGAAATGTGTAATTTGATCT+TGG - chr4_1:71467372-71467391 Msa0569540:five_prime_UTR 25.0%
! TTTCCAAATGACATATAAGA+CGG + chr4_1:71467446-71467465 None:intergenic 25.0%
! GATAGTTTCTTCATCTTTTC+CGG - chr4_1:71459975-71459994 Msa0569540:three_prime_UTR 30.0%
! GCAGATTTGGATTTTGAATT+CGG - chr4_1:71460056-71460075 Msa0569540:intron 30.0%
AAACAAGTAGAGGATGAATT+AGG + chr4_1:71460215-71460234 None:intergenic 30.0%
! TAGATTTGGTAAACAAGTAG+AGG + chr4_1:71460225-71460244 None:intergenic 30.0%
! GAAGTATTTGTGTTTGCAAT+TGG - chr4_1:71460561-71460580 Msa0569540:intron 30.0%
AAAATTGCTGATAGGTAACA+TGG - chr4_1:71460738-71460757 Msa0569540:three_prime_UTR 30.0%
ACTGCATCAATATAATCTCA+GGG + chr4_1:71460807-71460826 None:intergenic 30.0%
AACTGCATCAATATAATCTC+AGG + chr4_1:71460808-71460827 None:intergenic 30.0%
TATACATGTCTCTCTATCAT+TGG - chr4_1:71460915-71460934 Msa0569540:three_prime_UTR 30.0%
ATACATGTCTCTCTATCATT+GGG - chr4_1:71460916-71460935 Msa0569540:three_prime_UTR 30.0%
AATCTATCCTCATTCATTGT+AGG - chr4_1:71461151-71461170 Msa0569540:intron 30.0%
!!! ATATTTTGAAGTGTGGCTTT+TGG - chr4_1:71461479-71461498 Msa0569540:intron 30.0%
TGATAAAAGGGAATATGCTT+TGG - chr4_1:71461611-71461630 Msa0569540:intron 30.0%
! GTTTATCCTGGTCAAAATTT+TGG + chr4_1:71461780-71461799 None:intergenic 30.0%
! TTTTGACCAGGATAAACTAA+TGG - chr4_1:71461783-71461802 Msa0569540:intron 30.0%
! CATATTATGAGTGTTAGTCT+AGG + chr4_1:71461854-71461873 None:intergenic 30.0%
!! TACAGAGTTAGTCTTATAAC+GGG + chr4_1:71461930-71461949 None:intergenic 30.0%
!!! GAAGGTGTTTGTACATTTTT+TGG - chr4_1:71462250-71462269 Msa0569540:intron 30.0%
!!! AACTTGGTTTTGAAACTGAT+CGG - chr4_1:71462410-71462429 Msa0569540:three_prime_UTR 30.0%
!! TCATAATTTGTTGGGACTAT+CGG + chr4_1:71462824-71462843 None:intergenic 30.0%
CCAATTATGAAGATAAACTG+AGG + chr4_1:71462958-71462977 None:intergenic 30.0%
CCTCAGTTTATCTTCATAAT+TGG - chr4_1:71462955-71462974 Msa0569540:intron 30.0%
AGTTTATCTTCATAATTGGC+AGG - chr4_1:71462959-71462978 Msa0569540:intron 30.0%
ACATCTGTTCTCTTTCAATA+TGG + chr4_1:71463013-71463032 None:intergenic 30.0%
GCAAGTTATCTCTAATTATC+TGG + chr4_1:71463070-71463089 None:intergenic 30.0%
!! TTTAATATTTAGGGGGCATT+TGG - chr4_1:71463210-71463229 Msa0569540:three_prime_UTR 30.0%
GGCATTTGGAAAAGTTTATT+TGG - chr4_1:71463224-71463243 Msa0569540:three_prime_UTR 30.0%
TTATTGAAACTACTTGTGTG+AGG - chr4_1:71463351-71463370 Msa0569540:intron 30.0%
! GTAAAGATAGAATTTGGGAT+GGG + chr4_1:71463407-71463426 None:intergenic 30.0%
AGTAAAGATAGAATTTGGGA+TGG + chr4_1:71463408-71463427 None:intergenic 30.0%
TTCGTCATACAATTATGCAT+GGG + chr4_1:71463470-71463489 None:intergenic 30.0%
ATTCGTCATACAATTATGCA+TGG + chr4_1:71463471-71463490 None:intergenic 30.0%
! CAGATCATAACTTTTCTGAA+AGG + chr4_1:71463659-71463678 None:intergenic 30.0%
!!! TTTTTCATTTTTTCCCTTCG+GGG - chr4_1:71463876-71463895 Msa0569540:intron 30.0%
!!! TATGTACCTGTTTTAAGACA+CGG - chr4_1:71464020-71464039 Msa0569540:three_prime_UTR 30.0%
!!! AGTTTTATTTTCTTGCCTGA+TGG - chr4_1:71464194-71464213 Msa0569540:intron 30.0%
GTTGAATTGAAGCAAGTTAA+TGG - chr4_1:71464234-71464253 Msa0569540:intron 30.0%
ACTCAATGAAAGGTGAATTT+AGG - chr4_1:71464300-71464319 Msa0569540:intron 30.0%
CTCAATGAAAGGTGAATTTA+GGG - chr4_1:71464301-71464320 Msa0569540:intron 30.0%
CTTATCCATTGTAATTTAGG+TGG - chr4_1:71464352-71464371 Msa0569540:intron 30.0%
TATCCATTGTAATTTAGGTG+GGG - chr4_1:71464354-71464373 Msa0569540:intron 30.0%
TTGAAAACTGTTCAATGTTG+AGG - chr4_1:71464522-71464541 Msa0569540:intron 30.0%
AATACAAGGATTGTTCTTCT+CGG - chr4_1:71464613-71464632 Msa0569540:three_prime_UTR 30.0%
CTCTTTCTGATGTTGTATAA+TGG - chr4_1:71464751-71464770 Msa0569540:three_prime_UTR 30.0%
! TTTTAGTCACGTACAATTGT+TGG - chr4_1:71465387-71465406 Msa0569540:intron 30.0%
ATGACAACTGAATCTAATCT+AGG + chr4_1:71465618-71465637 None:intergenic 30.0%
AGATTAGATTCAGTTGTCAT+TGG - chr4_1:71465618-71465637 Msa0569540:intron 30.0%
GATTAGATTCAGTTGTCATT+GGG - chr4_1:71465619-71465638 Msa0569540:intron 30.0%
GCTTCTAGATTATCTACAAT+CGG - chr4_1:71465705-71465724 Msa0569540:intron 30.0%
TTATATGCACAATGGAAACA+TGG - chr4_1:71465907-71465926 Msa0569540:intron 30.0%
CTCACCTAAATTATCTCATT+AGG - chr4_1:71466106-71466125 Msa0569540:intron 30.0%
ACCTAAATTATCTCATTAGG+AGG - chr4_1:71466109-71466128 Msa0569540:intron 30.0%
CCTAAATTATCTCATTAGGA+GGG - chr4_1:71466110-71466129 Msa0569540:intron 30.0%
CTAAATTATCTCATTAGGAG+GGG - chr4_1:71466111-71466130 Msa0569540:intron 30.0%
! AATGTTGAAGAGTTTTTCAC+AGG + chr4_1:71466172-71466191 None:intergenic 30.0%
TGTGAAAAACTCTTCAACAT+TGG - chr4_1:71466171-71466190 Msa0569540:intron 30.0%
AACAATACAGGATAGTGATA+TGG + chr4_1:71466398-71466417 None:intergenic 30.0%
CGCAAAAATTAGAACAATAC+AGG + chr4_1:71466410-71466429 None:intergenic 30.0%
TTATCATTGCATAGTAATCC+AGG + chr4_1:71466531-71466550 None:intergenic 30.0%
ACAATTTGGTCATTAGAGTT+AGG - chr4_1:71466611-71466630 Msa0569540:intron 30.0%
TACTAAACTTGTGGATCTAA+AGG + chr4_1:71466657-71466676 None:intergenic 30.0%
TTTCGTCATTACTAAACTTG+TGG + chr4_1:71466666-71466685 None:intergenic 30.0%
! GATTGAAGGTTTGTTTAACT+CGG + chr4_1:71466756-71466775 None:intergenic 30.0%
! CAATATTGACTAGAGATTGA+AGG + chr4_1:71466770-71466789 None:intergenic 30.0%
! ACTTTGACATTTCTTTTGGA+GGG + chr4_1:71466796-71466815 None:intergenic 30.0%
! TACTTTGACATTTCTTTTGG+AGG + chr4_1:71466797-71466816 None:intergenic 30.0%
! CAAGTTCTGTCAATGATTTT+AGG - chr4_1:71466993-71467012 Msa0569540:intron 30.0%
!!! TCTGTCAATGATTTTAGGTT+AGG - chr4_1:71466998-71467017 Msa0569540:intron 30.0%
AAATATCAAAATCGGTAGAG+TGG + chr4_1:71467229-71467248 None:intergenic 30.0%
AATGTGTAATTTGATCTTGG+AGG - chr4_1:71467375-71467394 Msa0569540:five_prime_UTR 30.0%
! AGACGACTTTTACTATTATC+TGG - chr4_1:71467416-71467435 Msa0569540:five_prime_UTR 30.0%
TTTCCGTCTTATATGTCATT+TGG - chr4_1:71467440-71467459 Msa0569540:five_prime_UTR 30.0%
!!! TAATTAGGGGCGTTAGTTTT+AGG + chr4_1:71459614-71459633 None:intergenic 35.0%
TGCTTTGGTTAACAAAGCAA+CGG - chr4_1:71459648-71459667 Msa0569540:three_prime_UTR 35.0%
GATGAAATTGGGAGATGAAT+AGG + chr4_1:71459746-71459765 None:intergenic 35.0%
GACATGGTTGAGATGAAATT+GGG + chr4_1:71459757-71459776 None:intergenic 35.0%
TGACATGGTTGAGATGAAAT+TGG + chr4_1:71459758-71459777 None:intergenic 35.0%
TTTCATCTCAACCATGTCAA+CGG - chr4_1:71459759-71459778 Msa0569540:three_prime_UTR 35.0%
! GAGCGTTTTGCGAAAATATT+GGG + chr4_1:71459815-71459834 None:intergenic 35.0%
!! AGAGCGTTTTGCGAAAATAT+TGG + chr4_1:71459816-71459835 None:intergenic 35.0%
AGAAGAGTGATAGATGAAGT+AGG + chr4_1:71459841-71459860 None:intergenic 35.0%
ATGAAGAAACTATCGTACCT+CGG + chr4_1:71459969-71459988 None:intergenic 35.0%
TATGATGTGATTGTAGTTGG+AGG - chr4_1:71460089-71460108 Msa0569540:intron 35.0%
TTCTTACTCTCAACATTGAC+AGG - chr4_1:71460171-71460190 Msa0569540:intron 35.0%
AAACGCAAACACATTCAACT+TGG + chr4_1:71460314-71460333 None:intergenic 35.0%
TGCAATTGGTTAAACACATG+AGG - chr4_1:71460575-71460594 Msa0569540:intron 35.0%
!!! TTTCTGACTGAGACTAGTTT+TGG - chr4_1:71460632-71460651 Msa0569540:intron 35.0%
ACATAGGGAAAATTGCTGAT+AGG - chr4_1:71460730-71460749 Msa0569540:three_prime_UTR 35.0%
GACCATTAGATCACAATAAC+TGG - chr4_1:71460836-71460855 Msa0569540:three_prime_UTR 35.0%
TGCCAGTTATTGTGATCTAA+TGG + chr4_1:71460841-71460860 None:intergenic 35.0%
ATCACAATAACTGGCATGTT+TGG - chr4_1:71460845-71460864 Msa0569540:three_prime_UTR 35.0%
AAAATGGTCTAATGAGTTCC+TGG - chr4_1:71461214-71461233 Msa0569540:intron 35.0%
!! ATTGGTTAGTTTGGCTTGAA+CGG + chr4_1:71461354-71461373 None:intergenic 35.0%
TATCATTGCTATCGTCCATT+CGG - chr4_1:71461413-71461432 Msa0569540:intron 35.0%
TGAATCAAGATTGTACCGAA+TGG + chr4_1:71461431-71461450 None:intergenic 35.0%
CGTGTACTCAATTCTTCAAA+AGG - chr4_1:71461558-71461577 Msa0569540:intron 35.0%
TCTGAAAGTAACAAAGGGAA+GGG + chr4_1:71461683-71461702 None:intergenic 35.0%
TGGAGTCTGAAAGTAACAAA+GGG + chr4_1:71461688-71461707 None:intergenic 35.0%
GCACAGCAAAAAATAGATAC+TGG + chr4_1:71461708-71461727 None:intergenic 35.0%
GATCTATAATAGTCACTCAG+TGG - chr4_1:71461743-71461762 Msa0569540:intron 35.0%
!! GTTGAACCAAAATTTTGACC+AGG - chr4_1:71461771-71461790 Msa0569540:intron 35.0%
AAGCAATATCTCGTCATGTA+AGG + chr4_1:71461984-71462003 None:intergenic 35.0%
ATGGTCACTGATATCTTACT+GGG - chr4_1:71462211-71462230 Msa0569540:intron 35.0%
ATGAGTGGTAAAATATGGGT+TGG - chr4_1:71462319-71462338 Msa0569540:intron 35.0%
! AATCGGCTTAAGAAACATCT+TGG + chr4_1:71462758-71462777 None:intergenic 35.0%
AAACAAGGCAATCAGAGAAT+CGG + chr4_1:71462775-71462794 None:intergenic 35.0%
!! TTGCAGAGTATTGTCAAACA+AGG + chr4_1:71462790-71462809 None:intergenic 35.0%
TTTACTCTGTAAAACGGAGA+TGG - chr4_1:71462927-71462946 Msa0569540:intron 35.0%
TCTCTTTCAATATGGACATC+TGG + chr4_1:71463005-71463024 None:intergenic 35.0%
ACACCTTATCTTCTATGGAA+GGG + chr4_1:71463145-71463164 None:intergenic 35.0%
GAAACACACCTTATCTTCTA+TGG + chr4_1:71463150-71463169 None:intergenic 35.0%
TACAATTATGCATGGGGAAA+AGG + chr4_1:71463463-71463482 None:intergenic 35.0%
TCGTCATACAATTATGCATG+GGG + chr4_1:71463469-71463488 None:intergenic 35.0%
TTTGATGAGACTCTTTGTCT+TGG + chr4_1:71463757-71463776 None:intergenic 35.0%
TCAAATATTTCTTGAACCGG+AGG - chr4_1:71463772-71463791 Msa0569540:intron 35.0%
CAAATATTTCTTGAACCGGA+GGG - chr4_1:71463773-71463792 Msa0569540:intron 35.0%
ATAGTCATCAATCGCAAAAG+TGG - chr4_1:71463979-71463998 Msa0569540:three_prime_UTR 35.0%
! CAGGTACATATATTTGTTGC+AGG + chr4_1:71464010-71464029 None:intergenic 35.0%
AATTACATCCTTGTTCCATC+AGG + chr4_1:71464212-71464231 None:intergenic 35.0%
GATGGAACAAGGATGTAATT+TGG - chr4_1:71464212-71464231 Msa0569540:intron 35.0%
ATCCATTGTAATTTAGGTGG+GGG - chr4_1:71464355-71464374 Msa0569540:intron 35.0%
TCCTTCTCAAGATAAAAAGG+AGG + chr4_1:71464402-71464421 None:intergenic 35.0%
CTCTCCTTCTCAAGATAAAA+AGG + chr4_1:71464405-71464424 None:intergenic 35.0%
! CTTTTTATCTTGAGAAGGAG+AGG - chr4_1:71464403-71464422 Msa0569540:intron 35.0%
!!! ATTGAACAGTTTTCAAGTCC+AGG + chr4_1:71464518-71464537 None:intergenic 35.0%
ATACAAGGATTGTTCTTCTC+GGG - chr4_1:71464614-71464633 Msa0569540:three_prime_UTR 35.0%
!!! TCTACTCTTTTTTATCCTCC+AGG - chr4_1:71464840-71464859 Msa0569540:exon 35.0%
!!! CTACTCTTTTTTATCCTCCA+GGG - chr4_1:71464841-71464860 Msa0569540:exon 35.0%
! AATTGATGATCTAGTCACCA+AGG - chr4_1:71464951-71464970 Msa0569540:intron 35.0%
GAGAAATGAGAAATGGAATG+AGG + chr4_1:71465056-71465075 None:intergenic 35.0%
CAATTGTACGTGACTAAAAG+AGG + chr4_1:71465386-71465405 None:intergenic 35.0%
TATAGGAAAAACAGGACTTG+GGG + chr4_1:71465439-71465458 None:intergenic 35.0%
CTATAGGAAAAACAGGACTT+GGG + chr4_1:71465440-71465459 None:intergenic 35.0%
ACTATAGGAAAAACAGGACT+TGG + chr4_1:71465441-71465460 None:intergenic 35.0%
CTACAGACTATAGGAAAAAC+AGG + chr4_1:71465447-71465466 None:intergenic 35.0%
TACTGTTAGCTACAGACTAT+AGG + chr4_1:71465456-71465475 None:intergenic 35.0%
! AATTTTGTAGTGCGAGAATG+TGG - chr4_1:71465514-71465533 Msa0569540:intron 35.0%
! ATTTTGTAGTGCGAGAATGT+GGG - chr4_1:71465515-71465534 Msa0569540:intron 35.0%
TAGATTATCTACAATCGGCT+TGG - chr4_1:71465710-71465729 Msa0569540:intron 35.0%
TGCATTGTGAATACATACAC+AGG - chr4_1:71465792-71465811 Msa0569540:intron 35.0%
ACATGGTACTTAGATTACAG+TGG - chr4_1:71465924-71465943 Msa0569540:intron 35.0%
TAGATTACAGTGGAAACTAC+TGG - chr4_1:71465934-71465953 Msa0569540:intron 35.0%
CTACTGGTATATTTGTCTAG+TGG - chr4_1:71465950-71465969 Msa0569540:intron 35.0%
ATTTCTACTTCACACTAGCA+TGG + chr4_1:71465981-71466000 None:intergenic 35.0%
ATTACTGTTGTCCATTCTCT+TGG - chr4_1:71466015-71466034 Msa0569540:intron 35.0%
AACATATGTTGCCAAGAGAA+TGG + chr4_1:71466029-71466048 None:intergenic 35.0%
CCCTCCTAATGAGATAATTT+AGG + chr4_1:71466113-71466132 None:intergenic 35.0%
GCTGAAATTACTGTTATGTC+TGG - chr4_1:71466142-71466161 Msa0569540:intron 35.0%
AAGAAACCGCACATACAATA+TGG - chr4_1:71466205-71466224 Msa0569540:intron 35.0%
AGAAGTCCATATTGTATGTG+CGG + chr4_1:71466214-71466233 None:intergenic 35.0%
TATGGACTTCTTGATAAGCA+TGG - chr4_1:71466223-71466242 Msa0569540:intron 35.0%
! CTTCTTGATAAGCATGGTTT+TGG - chr4_1:71466229-71466248 Msa0569540:intron 35.0%
TGTCCGTTATACATGTTAAC+TGG - chr4_1:71466349-71466368 Msa0569540:CDS 35.0%
GCTCCAGTTAACATGTATAA+CGG + chr4_1:71466355-71466374 None:intergenic 35.0%
TGCGCATTATAGAATTTCAG+AGG - chr4_1:71466426-71466445 Msa0569540:intron 35.0%
GTCAAATCTCATTGTTGTGT+TGG - chr4_1:71466459-71466478 Msa0569540:intron 35.0%
TTGTTGAGTAACCATCTACA+TGG + chr4_1:71466488-71466507 None:intergenic 35.0%
TTTGGTCATTAGAGTTAGGT+TGG - chr4_1:71466615-71466634 Msa0569540:intron 35.0%
TTGGTCATTAGAGTTAGGTT+GGG - chr4_1:71466616-71466635 Msa0569540:intron 35.0%
!! TATTTGCTGTACACAACGAT+GGG + chr4_1:71466926-71466945 None:intergenic 35.0%
AATGAGTAGTGCAGTGATAT+CGG + chr4_1:71467070-71467089 None:intergenic 35.0%
GTTTCAGTCAAAGAAACTTC+AGG + chr4_1:71467180-71467199 None:intergenic 35.0%
ATAGATTGACAGAGAGGAAA+AGG - chr4_1:71467291-71467310 Msa0569540:exon 35.0%
CTAACGCCCCTAATTATCAT+CGG - chr4_1:71459618-71459637 Msa0569540:three_prime_UTR 40.0%
CCTCATCCGATGATAATTAG+GGG + chr4_1:71459627-71459646 None:intergenic 40.0%
GCCTCATCCGATGATAATTA+GGG + chr4_1:71459628-71459647 None:intergenic 40.0%
AGCCTCATCCGATGATAATT+AGG + chr4_1:71459629-71459648 None:intergenic 40.0%
CGACAGAAATGCAGAGTAAA+TGG + chr4_1:71459787-71459806 None:intergenic 40.0%
AGTTGTTCGTCGGAAATTGA+GGG + chr4_1:71459875-71459894 None:intergenic 40.0%
TGAAGAAACTATCGTACCTC+GGG + chr4_1:71459968-71459987 None:intergenic 40.0%
TCTCTCTATCATTGGGAGAT+GGG - chr4_1:71460923-71460942 Msa0569540:intron 40.0%
TCCTCATTCATTGTAGGTTG+TGG - chr4_1:71461157-71461176 Msa0569540:intron 40.0%
ACCACAACCTACAATGAATG+AGG + chr4_1:71461161-71461180 None:intergenic 40.0%
!! TTGGTTAGTTTGGCTTGAAC+GGG + chr4_1:71461353-71461372 None:intergenic 40.0%
!!! TTTTGAAGTGTGGCTTTTGG+TGG - chr4_1:71461482-71461501 Msa0569540:intron 40.0%
TACGTGCTCAGACTGATAAA+AGG - chr4_1:71461598-71461617 Msa0569540:intron 40.0%
ACGTGCTCAGACTGATAAAA+GGG - chr4_1:71461599-71461618 Msa0569540:intron 40.0%
CTGAAAGTAACAAAGGGAAG+GGG + chr4_1:71461682-71461701 None:intergenic 40.0%
GTCTGAAAGTAACAAAGGGA+AGG + chr4_1:71461684-71461703 None:intergenic 40.0%
CTGGAGTCTGAAAGTAACAA+AGG + chr4_1:71461689-71461708 None:intergenic 40.0%
CTATAATAGTCACTCAGTGG+TGG - chr4_1:71461746-71461765 Msa0569540:intron 40.0%
! GTTCTGCCATTAGTTTATCC+TGG + chr4_1:71461792-71461811 None:intergenic 40.0%
!! AGTTAGTCTTATAACGGGTG+AGG + chr4_1:71461925-71461944 None:intergenic 40.0%
!! AAAGTTGGTAAGAAGCACCA+AGG - chr4_1:71462013-71462032 Msa0569540:intron 40.0%
TCCAAACCTTTCTATTCGAG+AGG - chr4_1:71462186-71462205 Msa0569540:three_prime_UTR 40.0%
CAGTAAGATATCAGTGACCA+TGG + chr4_1:71462212-71462231 None:intergenic 40.0%
CATGGTCACTGATATCTTAC+TGG - chr4_1:71462210-71462229 Msa0569540:intron 40.0%
TGGTCACTGATATCTTACTG+GGG - chr4_1:71462212-71462231 Msa0569540:intron 40.0%
ACTGAGAACTTACAGCAACT+TGG - chr4_1:71462394-71462413 Msa0569540:three_prime_UTR 40.0%
ATTCGGACTGTAGATTTCTC+TGG - chr4_1:71462463-71462482 Msa0569540:three_prime_UTR 40.0%
! TCTGGATTAGAATCTCAACC+TGG - chr4_1:71462481-71462500 Msa0569540:three_prime_UTR 40.0%
GTCCAGGTGGTAAATTACTA+AGG + chr4_1:71462697-71462716 None:intergenic 40.0%
TAGTAATTTACCACCTGGAC+TGG - chr4_1:71462697-71462716 Msa0569540:intron 40.0%
TAGCACTAGTAGTACGAGTT+AGG + chr4_1:71463043-71463062 None:intergenic 40.0%
CACACCTTATCTTCTATGGA+AGG + chr4_1:71463146-71463165 None:intergenic 40.0%
GAAATTCAAGAGGGGATAGA+GGG + chr4_1:71463382-71463401 None:intergenic 40.0%
! AAGATAGAATTTGGGATGGG+TGG + chr4_1:71463404-71463423 None:intergenic 40.0%
ATTGCTCATACCTCAGATGT+AGG + chr4_1:71464076-71464095 None:intergenic 40.0%
! CCTGCGTTGTTTCATAAAGT+TGG + chr4_1:71464158-71464177 None:intergenic 40.0%
CCAACTTTATGAAACAACGC+AGG - chr4_1:71464155-71464174 Msa0569540:intron 40.0%
TTATGAAACAACGCAGGAAG+AGG - chr4_1:71464161-71464180 Msa0569540:intron 40.0%
! TTTTCTTGCCTGATGGAACA+AGG - chr4_1:71464201-71464220 Msa0569540:intron 40.0%
! GCCTCCTTTTTATCTTGAGA+AGG - chr4_1:71464398-71464417 Msa0569540:intron 40.0%
ATCTTATAGGGGTTCTCAAC+CGG - chr4_1:71464452-71464471 Msa0569540:intron 40.0%
TCATATTCCACAGCATATGC+AGG + chr4_1:71464548-71464567 None:intergenic 40.0%
TTCTTCTCGGGTCAGATAAA+TGG - chr4_1:71464626-71464645 Msa0569540:three_prime_UTR 40.0%
GGTCAGATAAATGGAACTAC+AGG - chr4_1:71464635-71464654 Msa0569540:three_prime_UTR 40.0%
TGATACCAGAAATAATGCCC+TGG + chr4_1:71464861-71464880 None:intergenic 40.0%
TACCTTGTTAACATCCGGTA+AGG + chr4_1:71464988-71465007 None:intergenic 40.0%
TAGCGTACCTTGTTAACATC+CGG + chr4_1:71464993-71465012 None:intergenic 40.0%
AATCCAATTTCACGACCCAA+AGG + chr4_1:71465172-71465191 None:intergenic 40.0%
GATTGATAGATGATAGGCGT+TGG - chr4_1:71465188-71465207 Msa0569540:intron 40.0%
AATTAGTTGGCACACATGCA+TGG + chr4_1:71465297-71465316 None:intergenic 40.0%
TATCTCATTAGGAGGGGATT+TGG - chr4_1:71466117-71466136 Msa0569540:intron 40.0%
GTATGTGCGGTTTCTTAAGA+AGG + chr4_1:71466201-71466220 None:intergenic 40.0%
TGTGTTGGATTCCATGTAGA+TGG - chr4_1:71466474-71466493 Msa0569540:intron 40.0%
AGCTCGTGAAAAACTTTCCA+AGG - chr4_1:71466564-71466583 Msa0569540:intron 40.0%
!! CTATTTGCTGTACACAACGA+TGG + chr4_1:71466927-71466946 None:intergenic 40.0%
CATCGTTGTGTACAGCAAAT+AGG - chr4_1:71466925-71466944 Msa0569540:CDS 40.0%
TCAAGCTAATACCCAAGATG+AGG - chr4_1:71467152-71467171 Msa0569540:CDS 40.0%
TTGACTGAAACAGCTAGATC+TGG - chr4_1:71467189-71467208 Msa0569540:CDS 40.0%
AGATGGATAGATTGACAGAG+AGG - chr4_1:71467285-71467304 Msa0569540:exon 40.0%
GGAAAAGGAACTGTTTGTAG+TGG - chr4_1:71467306-71467325 Msa0569540:five_prime_UTR 40.0%
CCCCTAATTATCATCGGATG+AGG - chr4_1:71459624-71459643 Msa0569540:three_prime_UTR 45.0%
AAGTTCTCATTGTCGTTCGC+TGG + chr4_1:71459714-71459733 None:intergenic 45.0%
AGTAAATGGCACCGTTGACA+TGG + chr4_1:71459773-71459792 None:intergenic 45.0%
GAGTTGTTCGTCGGAAATTG+AGG + chr4_1:71459876-71459895 None:intergenic 45.0%
ATTTCCGACGAACAACTCAC+CGG - chr4_1:71459878-71459897 Msa0569540:three_prime_UTR 45.0%
! TCTTCATCTTTTCCGGTGTC+AGG - chr4_1:71459982-71460001 Msa0569540:three_prime_UTR 45.0%
!! CTTCATCTTTTCCGGTGTCA+GGG - chr4_1:71459983-71460002 Msa0569540:three_prime_UTR 45.0%
GATGTGATTGTAGTTGGAGG+AGG - chr4_1:71460092-71460111 Msa0569540:intron 45.0%
TCAACATTGACAGGATTGCG+TGG - chr4_1:71460180-71460199 Msa0569540:intron 45.0%
!! TAGCCTTGTAATCCAGCAGT+TGG - chr4_1:71460657-71460676 Msa0569540:intron 45.0%
GTCTCTCTATCATTGGGAGA+TGG - chr4_1:71460922-71460941 Msa0569540:three_prime_UTR 45.0%
! CGATCATTTTGCAACTGTCC+AGG + chr4_1:71461235-71461254 None:intergenic 45.0%
CGCACATTCAAAGCTATACG+AGG - chr4_1:71461253-71461272 Msa0569540:intron 45.0%
!! AGTCTTATAACGGGTGAGGT+TGG + chr4_1:71461921-71461940 None:intergenic 45.0%
!! TAAGAAGCACCAAGGTGAGT+GGG - chr4_1:71462021-71462040 Msa0569540:intron 45.0%
TATATTCTCCCCACTCACCT+TGG + chr4_1:71462033-71462052 None:intergenic 45.0%
GCCTCTCGAATAGAAAGGTT+TGG + chr4_1:71462190-71462209 None:intergenic 45.0%
ACTGGGGAAGAATGACAATG+TGG - chr4_1:71462228-71462247 Msa0569540:intron 45.0%
GGGAAGAATGACAATGTGGA+AGG - chr4_1:71462232-71462251 Msa0569540:intron 45.0%
TCCATCAGTCATTCTCACCA+CGG - chr4_1:71462288-71462307 Msa0569540:intron 45.0%
! ACCACGGGAACTTTTATGAG+TGG - chr4_1:71462304-71462323 Msa0569540:intron 45.0%
ACCACTCATAAAAGTTCCCG+TGG + chr4_1:71462308-71462327 None:intergenic 45.0%
GAAACTGATCGGCTGAAAAC+TGG - chr4_1:71462421-71462440 Msa0569540:three_prime_UTR 45.0%
ATCTCAACCTGGAGATGAAG+AGG - chr4_1:71462492-71462511 Msa0569540:three_prime_UTR 45.0%
GGCCTTAGTAATTTACCACC+TGG - chr4_1:71462692-71462711 Msa0569540:intron 45.0%
TTCATAATTGGCAGGTCAGC+TGG - chr4_1:71462967-71462986 Msa0569540:intron 45.0%
TTGCATGAAACGCCCACTTA+TGG - chr4_1:71463086-71463105 Msa0569540:three_prime_UTR 45.0%
TCAACCCATCCTCCATAAGT+GGG + chr4_1:71463101-71463120 None:intergenic 45.0%
TTCAACCCATCCTCCATAAG+TGG + chr4_1:71463102-71463121 None:intergenic 45.0%
TCTATGGAAGGGCAGTATCT+AGG + chr4_1:71463134-71463153 None:intergenic 45.0%
CTGCCCTTCCATAGAAGATA+AGG - chr4_1:71463139-71463158 Msa0569540:three_prime_UTR 45.0%
GGAAATTCAAGAGGGGATAG+AGG + chr4_1:71463383-71463402 None:intergenic 45.0%
GATGGGTGGAAATTCAAGAG+GGG + chr4_1:71463390-71463409 None:intergenic 45.0%
GGATGGGTGGAAATTCAAGA+GGG + chr4_1:71463391-71463410 None:intergenic 45.0%
CTTACTTGCACATAGAGCTC+AGG + chr4_1:71463809-71463828 None:intergenic 45.0%
!!! TTCATTTTTTCCCTTCGGGG+TGG - chr4_1:71463879-71463898 Msa0569540:intron 45.0%
!!! TCATTTTTTCCCTTCGGGGT+GGG - chr4_1:71463880-71463899 Msa0569540:intron 45.0%
GCATCACCGTGTCTTAAAAC+AGG + chr4_1:71464029-71464048 None:intergenic 45.0%
!! GTAGAAGCATCCTACATCTG+AGG - chr4_1:71464063-71464082 Msa0569540:three_prime_UTR 45.0%
AGCCCCCACCTAAATTACAA+TGG + chr4_1:71464360-71464379 None:intergenic 45.0%
GTAATTTAGGTGGGGGCTTA+TGG - chr4_1:71464362-71464381 Msa0569540:intron 45.0%
AAAGGCAACTGTAGTCTCTC+AGG + chr4_1:71464482-71464501 None:intergenic 45.0%
TACCTGCTCATCAATGCTCT+AGG - chr4_1:71464573-71464592 Msa0569540:three_prime_UTR 45.0%
! ATCCTCCAGGGCATTATTTC+TGG - chr4_1:71464853-71464872 Msa0569540:CDS 45.0%
TACCAGAAATAATGCCCTGG+AGG + chr4_1:71464858-71464877 None:intergenic 45.0%
GAGAGAGAGAGCAGTTACAT+AGG - chr4_1:71464922-71464941 Msa0569540:intron 45.0%
AGCCTTACCGGATGTTAACA+AGG - chr4_1:71464983-71465002 Msa0569540:intron 45.0%
TATTTAGCCGCTCAGAGCAT+CGG - chr4_1:71465107-71465126 Msa0569540:intron 45.0%
! AAAGTAACCGATGCTCTGAG+CGG + chr4_1:71465117-71465136 None:intergenic 45.0%
ACTCCTTTGGGTCGTGAAAT+TGG - chr4_1:71465166-71465185 Msa0569540:intron 45.0%
!! TAGGCGTTGGAAATTGTACC+AGG - chr4_1:71465201-71465220 Msa0569540:intron 45.0%
GAAATTGTACCAGGAGAAGC+AGG - chr4_1:71465210-71465229 Msa0569540:intron 45.0%
! ATCCTTTGGGGAAAGCAAGT+TGG - chr4_1:71465357-71465376 Msa0569540:intron 45.0%
! AACCAACTTGCTTTCCCCAA+AGG + chr4_1:71465362-71465381 None:intergenic 45.0%
!! TTGGCCTTGATTGAGACAAC+AGG - chr4_1:71465406-71465425 Msa0569540:intron 45.0%
TCAGCAAAGCCAACTTCAAC+AGG - chr4_1:71466324-71466343 Msa0569540:CDS 45.0%
ACGGACATACCTGTTGAAGT+TGG + chr4_1:71466336-71466355 None:intergenic 45.0%
TAAACCACTTCCTGAAGACC+TGG - chr4_1:71466510-71466529 Msa0569540:intron 45.0%
TAATCCAGGTCTTCAGGAAG+TGG + chr4_1:71466517-71466536 None:intergenic 45.0%
GCATAGTAATCCAGGTCTTC+AGG + chr4_1:71466523-71466542 None:intergenic 45.0%
TAGGTTAGGCCTCAAACCAT+TGG - chr4_1:71467012-71467031 Msa0569540:intron 45.0%
TCATTGAGCTCGAAGCCAAA+AGG - chr4_1:71467085-71467104 Msa0569540:intron 45.0%
! TCCTTGAGCTTTCCTCCTTT+TGG + chr4_1:71467103-71467122 None:intergenic 45.0%
AACTTCAGGCTCCTCATCTT+GGG + chr4_1:71467166-71467185 None:intergenic 45.0%
AAACTTCAGGCTCCTCATCT+TGG + chr4_1:71467167-71467186 None:intergenic 45.0%
ATCATCGGATGAGGCTGCTT+TGG - chr4_1:71459633-71459652 Msa0569540:three_prime_UTR 50.0%
TTCTCATTGTCGTTCGCTGG+AGG + chr4_1:71459711-71459730 None:intergenic 50.0%
GTCGGAAATTGAGGGAAGGA+GGG + chr4_1:71459867-71459886 None:intergenic 50.0%
GTTCGTCGGAAATTGAGGGA+AGG + chr4_1:71459871-71459890 None:intergenic 50.0%
TTCTCCGGTGAGTTGTTCGT+CGG + chr4_1:71459885-71459904 None:intergenic 50.0%
AGGCGGAAAAGGAGATTCTC+CGG + chr4_1:71459900-71459919 None:intergenic 50.0%
AGAAACTATCGTACCTCGGG+AGG + chr4_1:71459965-71459984 None:intergenic 50.0%
TGCTCTTGCTTCTGCACGTT+TGG - chr4_1:71460133-71460152 Msa0569540:intron 50.0%
GCTCTTGCTTCTGCACGTTT+GGG - chr4_1:71460134-71460153 Msa0569540:intron 50.0%
AACACATGAGGCATGATGCG+TGG - chr4_1:71460587-71460606 Msa0569540:intron 50.0%
GCACCAACTGCTGGATTACA+AGG + chr4_1:71460663-71460682 None:intergenic 50.0%
GTCCACTTCATGAACGAGCT+GGG + chr4_1:71460697-71460716 None:intergenic 50.0%
!! GTAAGAAGCACCAAGGTGAG+TGG - chr4_1:71462020-71462039 Msa0569540:intron 50.0%
!! AAGAAGCACCAAGGTGAGTG+GGG - chr4_1:71462022-71462041 Msa0569540:intron 50.0%
CCATGGCCTCTCGAATAGAA+AGG + chr4_1:71462195-71462214 None:intergenic 50.0%
CCTTTCTATTCGAGAGGCCA+TGG - chr4_1:71462192-71462211 Msa0569540:intron 50.0%
CCATCAGTCATTCTCACCAC+GGG - chr4_1:71462289-71462308 Msa0569540:intron 50.0%
TACAGTCCGAATGTCCACTC+GGG + chr4_1:71462455-71462474 None:intergenic 50.0%
CTACAGTCCGAATGTCCACT+CGG + chr4_1:71462456-71462475 None:intergenic 50.0%
GGAAGAACCTCTTCATCTCC+AGG + chr4_1:71462502-71462521 None:intergenic 50.0%
ACAGAATTCTCCAGTCCAGG+TGG + chr4_1:71462710-71462729 None:intergenic 50.0%
TGGACAGAATTCTCCAGTCC+AGG + chr4_1:71462713-71462732 None:intergenic 50.0%
GAACTTGCACAGCTGATGGA+TGG + chr4_1:71462736-71462755 None:intergenic 50.0%
CTTGGAACTTGCACAGCTGA+TGG + chr4_1:71462740-71462759 None:intergenic 50.0%
CATGAAACGCCCACTTATGG+AGG - chr4_1:71463089-71463108 Msa0569540:three_prime_UTR 50.0%
AAACGCCCACTTATGGAGGA+TGG - chr4_1:71463093-71463112 Msa0569540:three_prime_UTR 50.0%
AACGCCCACTTATGGAGGAT+GGG - chr4_1:71463094-71463113 Msa0569540:three_prime_UTR 50.0%
AGGGCAGTATCTAGGTCCTT+TGG + chr4_1:71463126-71463145 None:intergenic 50.0%
GGGATGGGTGGAAATTCAAG+AGG + chr4_1:71463392-71463411 None:intergenic 50.0%
CTGTAGTCTCTCAGGCAAAC+CGG + chr4_1:71464474-71464493 None:intergenic 50.0%
CCAGGCAAAGTTCTCAGCAA+AGG + chr4_1:71464500-71464519 None:intergenic 50.0%
CCTTTGCTGAGAACTTTGCC+TGG - chr4_1:71464497-71464516 Msa0569540:intron 50.0%
!! GACCTAGAGCATTGATGAGC+AGG + chr4_1:71464578-71464597 None:intergenic 50.0%
CTATGAAGAAGCTGCAGCAC+AGG - chr4_1:71464658-71464677 Msa0569540:three_prime_UTR 50.0%
AACGCTGCTAGACATGCAGA+TGG - chr4_1:71464880-71464899 Msa0569540:intron 50.0%
! GCTCTGAGCGGCTAAATATC+AGG + chr4_1:71465105-71465124 None:intergenic 50.0%
TGATAGCCGTCTCACTCCTT+TGG - chr4_1:71465153-71465172 Msa0569540:intron 50.0%
GATAGCCGTCTCACTCCTTT+GGG - chr4_1:71465154-71465173 Msa0569540:intron 50.0%
AAAAACAGGACTTGGGGAGG+GGG + chr4_1:71465433-71465452 None:intergenic 50.0%
GAAAAACAGGACTTGGGGAG+GGG + chr4_1:71465434-71465453 None:intergenic 50.0%
GGAAAAACAGGACTTGGGGA+GGG + chr4_1:71465435-71465454 None:intergenic 50.0%
AGGAAAAACAGGACTTGGGG+AGG + chr4_1:71465436-71465455 None:intergenic 50.0%
GAGAATGTGGGAGCAAGTGA+TGG - chr4_1:71465527-71465546 Msa0569540:intron 50.0%
!! TCGGCTTGGCTTATGTCATG+TGG - chr4_1:71465724-71465743 Msa0569540:intron 50.0%
TGACGTCTCTCTGTCATGGT+CGG + chr4_1:71466901-71466920 None:intergenic 50.0%
GGATTGACGTCTCTCTGTCA+TGG + chr4_1:71466905-71466924 None:intergenic 50.0%
TAGGCCTCAAACCATTGGTC+AGG - chr4_1:71467017-71467036 Msa0569540:intron 50.0%
GTAGTGCAGTGATATCGGCA+GGG + chr4_1:71467065-71467084 None:intergenic 50.0%
AGTAGTGCAGTGATATCGGC+AGG + chr4_1:71467066-71467085 None:intergenic 50.0%
TTGAGCTCGAAGCCAAAAGG+AGG - chr4_1:71467088-71467107 Msa0569540:intron 50.0%
GCCAAAAGGAGGAAAGCTCA+AGG - chr4_1:71467099-71467118 Msa0569540:CDS 50.0%
CGCTGGAGGCAAATGTGAAG+CGG + chr4_1:71459697-71459716 None:intergenic 55.0%
CGTCGGAAATTGAGGGAAGG+AGG + chr4_1:71459868-71459887 None:intergenic 55.0%
GGAGAAAGTGGAGGCGGAAA+AGG + chr4_1:71459911-71459930 None:intergenic 55.0%
AACTATCGTACCTCGGGAGG+AGG + chr4_1:71459962-71459981 None:intergenic 55.0%
CCGAATTGACACCCTGACAC+CGG + chr4_1:71459997-71460016 None:intergenic 55.0%
! CCGGTGTCAGGGTGTCAATT+CGG - chr4_1:71459994-71460013 Msa0569540:three_prime_UTR 55.0%
CATTGACAGGATTGCGTGGC+AGG - chr4_1:71460184-71460203 Msa0569540:intron 55.0%
TGAACGAGCTGGGACTTTGC+AGG + chr4_1:71460687-71460706 None:intergenic 55.0%
GTCCCAGCTCGTTCATGAAG+TGG - chr4_1:71460692-71460711 Msa0569540:intron 55.0%
CGTCCACTTCATGAACGAGC+TGG + chr4_1:71460698-71460717 None:intergenic 55.0%
GTTCATGAAGTGGACGCGCT+TGG - chr4_1:71460702-71460721 Msa0569540:intron 55.0%
!! ACGCGCTTGGTGGTGACATA+GGG - chr4_1:71460715-71460734 Msa0569540:intron 55.0%
GCACGTAAAGCACGAACTGC+AGG + chr4_1:71461585-71461604 None:intergenic 55.0%
CCCGTGGTGAGAATGACTGA+TGG + chr4_1:71462292-71462311 None:intergenic 55.0%
GTAGAACCTCTATGCCCGCA+GGG - chr4_1:71462341-71462360 Msa0569540:intron 55.0%
! CTTGCACAGCTGATGGATGG+TGG + chr4_1:71462733-71462752 None:intergenic 55.0%
!! GGAGGATGGGTTGAAGCCAA+AGG - chr4_1:71463107-71463126 Msa0569540:three_prime_UTR 55.0%
GTTGAGGCCTGCATATGCTG+TGG - chr4_1:71464538-71464557 Msa0569540:intron 55.0%
CACGACCCAAAGGAGTGAGA+CGG + chr4_1:71465162-71465181 None:intergenic 55.0%
TGTACCAGGAGAAGCAGGCT+CGG - chr4_1:71465215-71465234 Msa0569540:intron 55.0%
AAATCCGAGCCTGCTTCTCC+TGG + chr4_1:71465222-71465241 None:intergenic 55.0%
GAAGCAGGCTCGGATTTCTG+AGG - chr4_1:71465225-71465244 Msa0569540:intron 55.0%
GGGGCCTGTTGTCTCAATCA+AGG + chr4_1:71465413-71465432 None:intergenic 55.0%
AAAACAGGACTTGGGGAGGG+GGG + chr4_1:71465432-71465451 None:intergenic 55.0%
GTCTCTCTGTCATGGTCGGT+CGG + chr4_1:71466897-71466916 None:intergenic 55.0%
CTCGCCTGACCAATGGTTTG+AGG + chr4_1:71467024-71467043 None:intergenic 55.0%
TACTCTGCTCGCCTGACCAA+TGG + chr4_1:71467031-71467050 None:intergenic 55.0%
ATTGGTCAGGCGAGCAGAGT+AGG - chr4_1:71467030-71467049 Msa0569540:intron 55.0%
GGAGGAAAGCTCAAGGACAG+AGG - chr4_1:71467106-71467125 Msa0569540:CDS 55.0%
GGAAAGCTCAAGGACAGAGG+AGG - chr4_1:71467109-71467128 Msa0569540:CDS 55.0%
GAAGCGACGGGAGAAAGTGG+AGG + chr4_1:71459920-71459939 None:intergenic 60.0%
GGAGAAGCGACGGGAGAAAG+TGG + chr4_1:71459923-71459942 None:intergenic 60.0%
ATGCGACGGTGGAGAAGCGA+CGG + chr4_1:71459933-71459952 None:intergenic 60.0%
GTAGTTGGAGGAGGACACGC+TGG - chr4_1:71460101-71460120 Msa0569540:intron 60.0%
TTTGCAGGCGCACCAACTGC+TGG + chr4_1:71460672-71460691 None:intergenic 60.0%
CATGAAGTGGACGCGCTTGG+TGG - chr4_1:71460705-71460724 Msa0569540:intron 60.0%
!! GACGCGCTTGGTGGTGACAT+AGG - chr4_1:71460714-71460733 Msa0569540:intron 60.0%
GGTAGAACCTCTATGCCCGC+AGG - chr4_1:71462340-71462359 Msa0569540:intron 60.0%
GCTGGCGAGTCTGCTTCACA+TGG - chr4_1:71462367-71462386 Msa0569540:intron 60.0%
AACTGGAACTCCAGCCCGAG+TGG - chr4_1:71462438-71462457 Msa0569540:three_prime_UTR 60.0%
CTCCAGCCCGAGTGGACATT+CGG - chr4_1:71462446-71462465 Msa0569540:three_prime_UTR 60.0%
TCAGGCACATCTCGACCCTC+CGG + chr4_1:71463791-71463810 None:intergenic 60.0%
CTGACTCAACCCACCCCGAA+GGG + chr4_1:71463892-71463911 None:intergenic 60.0%
TCTGACTCAACCCACCCCGA+AGG + chr4_1:71463893-71463912 None:intergenic 60.0%
GTAAGGCTCTCGCAGGTCCT+TGG + chr4_1:71464971-71464990 None:intergenic 60.0%
AGGACCTGCGAGAGCCTTAC+CGG - chr4_1:71464971-71464990 Msa0569540:intron 60.0%
ACATCCGGTAAGGCTCTCGC+AGG + chr4_1:71464978-71464997 None:intergenic 60.0%
GTCAGGCGAGCAGAGTAGGT+GGG - chr4_1:71467034-71467053 Msa0569540:intron 60.0%
TCAGGCGAGCAGAGTAGGTG+GGG - chr4_1:71467035-71467054 Msa0569540:intron 60.0%
GCGACGGGAGAAAGTGGAGG+CGG + chr4_1:71459917-71459936 None:intergenic 65.0%
TGCGACGGTGGAGAAGCGAC+GGG + chr4_1:71459932-71459951 None:intergenic 65.0%
GGAGGAGGAAGCGGATGCGA+CGG + chr4_1:71459947-71459966 None:intergenic 65.0%
CGTACCTCGGGAGGAGGAAG+CGG + chr4_1:71459956-71459975 None:intergenic 65.0%
AGCTCTCCCTGCGGGCATAG+AGG + chr4_1:71462350-71462369 None:intergenic 65.0%
TCTATGCCCGCAGGGAGAGC+TGG - chr4_1:71462349-71462368 Msa0569540:intron 65.0%
AGACTCGCCAGCTCTCCCTG+CGG + chr4_1:71462359-71462378 None:intergenic 65.0%
GTCCGAATGTCCACTCGGGC+TGG + chr4_1:71462451-71462470 None:intergenic 65.0%
GGTCAGGCGAGCAGAGTAGG+TGG - chr4_1:71467033-71467052 Msa0569540:intron 65.0%
GGAGGAAGCGGATGCGACGG+TGG + chr4_1:71459944-71459963 None:intergenic 70.0%
GCATCCGCTTCCTCCTCCCG+AGG - chr4_1:71459949-71459968 Msa0569540:three_prime_UTR 70.0%
GACTCGCCAGCTCTCCCTGC+GGG + chr4_1:71462358-71462377 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71459598 71467471 71459598 ID=Msa0569540;Name=Msa0569540
chr4_1 mRNA 71459598 71467471 71459598 ID=Msa0569540-mRNA-1;Parent=Msa0569540;Name=Msa0569540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|0.92|0.92|1|0.76|0.85|14|2305|188
chr4_1 exon 71459598 71460054 71459598 ID=Msa0569540-mRNA-1:exon:24234;Parent=Msa0569540-mRNA-1
chr4_1 exon 71460484 71460576 71460484 ID=Msa0569540-mRNA-1:exon:24233;Parent=Msa0569540-mRNA-1
chr4_1 exon 71460724 71460941 71460724 ID=Msa0569540-mRNA-1:exon:24232;Parent=Msa0569540-mRNA-1
chr4_1 exon 71461789 71461955 71461789 ID=Msa0569540-mRNA-1:exon:24231;Parent=Msa0569540-mRNA-1
chr4_1 exon 71462065 71462207 71462065 ID=Msa0569540-mRNA-1:exon:24230;Parent=Msa0569540-mRNA-1
chr4_1 exon 71462390 71462608 71462390 ID=Msa0569540-mRNA-1:exon:24229;Parent=Msa0569540-mRNA-1
chr4_1 exon 71462699 71462892 71462699 ID=Msa0569540-mRNA-1:exon:24228;Parent=Msa0569540-mRNA-1
chr4_1 exon 71462985 71463326 71462985 ID=Msa0569540-mRNA-1:exon:24227;Parent=Msa0569540-mRNA-1
chr4_1 exon 71463909 71464088 71463909 ID=Msa0569540-mRNA-1:exon:24226;Parent=Msa0569540-mRNA-1
chr4_1 exon 71464556 71464886 71464556 ID=Msa0569540-mRNA-1:exon:24225;Parent=Msa0569540-mRNA-1
chr4_1 exon 71465437 71465527 71465437 ID=Msa0569540-mRNA-1:exon:24224;Parent=Msa0569540-mRNA-1
chr4_1 exon 71466318 71466409 71466318 ID=Msa0569540-mRNA-1:exon:24223;Parent=Msa0569540-mRNA-1
chr4_1 exon 71466864 71467009 71466864 ID=Msa0569540-mRNA-1:exon:24222;Parent=Msa0569540-mRNA-1
chr4_1 exon 71467099 71467471 71467099 ID=Msa0569540-mRNA-1:exon:24221;Parent=Msa0569540-mRNA-1
chr4_1 five_prime_UTR 71467298 71467471 71467298 ID=Msa0569540-mRNA-1:five_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 CDS 71467099 71467297 71467099 ID=Msa0569540-mRNA-1:cds;Parent=Msa0569540-mRNA-1
chr4_1 CDS 71466864 71467009 71466864 ID=Msa0569540-mRNA-1:cds;Parent=Msa0569540-mRNA-1
chr4_1 CDS 71466318 71466409 71466318 ID=Msa0569540-mRNA-1:cds;Parent=Msa0569540-mRNA-1
chr4_1 CDS 71465437 71465527 71465437 ID=Msa0569540-mRNA-1:cds;Parent=Msa0569540-mRNA-1
chr4_1 CDS 71464848 71464886 71464848 ID=Msa0569540-mRNA-1:cds;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71464556 71464847 71464556 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71463909 71464088 71463909 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71462985 71463326 71462985 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71462699 71462892 71462699 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71462390 71462608 71462390 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71462065 71462207 71462065 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71461789 71461955 71461789 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71460724 71460941 71460724 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71460484 71460576 71460484 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
chr4_1 three_prime_UTR 71459598 71460054 71459598 ID=Msa0569540-mRNA-1:three_prime_utr;Parent=Msa0569540-mRNA-1
Gene Sequence

>Msa0569540

ATGTCAACGGTGCCATTTACTCTGCATTTCTGTCGCTTTACCCAATATTTTCGCAAAACGCTCTTTCCTACTTCATCTATCACTCTTCTCAACCCTCCTTCCCTCAATTTCCGACGAACAACTCACCGGAGAATCTCCTTTTCCGCCTCCACTTTCTCCCGTCGCTTCTCCACCGTCGCATCCGCTTCCTCCTCCCGAGATTTGGATTTTGAATTCGGAACAGAAAAATATGATGTGATTGTAGTTGGAGGAGGACACGCTGGTTGCGAAGCTGCTCTTGCTTCTGCACGTTTGGGTGCAAGAACTCTTCTTCTTACTCTCAACATTGACAGGATTGCGTGGCAGCCTTGTAATCCAGCAGTTGGTGCGCCTGCAAAGTCCCAGCTCGTTCATGAAGTGGACGCGCTTGGTGGTGACATAGGGAAAATTGCTGATAGATGCTACTTACAAAAGCGTGTACTCAATTCTTCAAAAGGTCCTGCAGTTCGTGCTTTACGTGCTCAGACTGATAAAAGGGAATATGCTTTGTACTCCAAACCTTTCTATTCGAGAGGCCATGGTCACTGA
Protein sequence

>Msa0569540

MSTVPFTLHFCRFTQYFRKTLFPTSSITLLNPPSLNFRRTTHRRISFSASTFSRRFSTVASASSSRDLDFEFGTEKYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGAPAKSQLVHEVDALGGDIGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYALYSKPFYSRGHGH*