Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570940 | XP_013446956.1 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 4.12e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570940 | sp|Q9FGQ2|SWT13_ARATH | 57.676 | 241 | 100 | 2 | 1 | 240 | 1 | 240 | 3.63e-93 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570940 | A0A072TVU1 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 1.97e-178 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0457370 | Msa0570940 | 0.830552 | 2.753873e-55 | -8.615850e-47 |
| Msa0563140 | Msa0570940 | 0.814314 | 1.640692e-51 | -8.615850e-47 |
| Msa0568230 | Msa0570940 | 0.827396 | 1.601585e-54 | -8.615850e-47 |
| Msa0570340 | Msa0570940 | 0.838814 | 2.298782e-57 | -8.615850e-47 |
| Msa0570720 | Msa0570940 | 0.826357 | 2.835382e-54 | -8.615850e-47 |
| Msa0570940 | Msa0883660 | 0.804016 | 2.644906e-49 | -8.615850e-47 |
| Msa0570940 | Msa1008340 | 0.815643 | 8.324433e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570940 | MtrunA17_Chr8g0386011 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 0.0 | 499 |
| Msa0570940 | MtrunA17_Chr3g0131961 | 57.364 | 258 | 97 | 4 | 5 | 253 | 6 | 259 | 1.39e-104 | 304 |
| Msa0570940 | MtrunA17_Chr3g0131951 | 50.794 | 252 | 117 | 4 | 1 | 246 | 63 | 313 | 1.44e-86 | 262 |
| Msa0570940 | MtrunA17_Chr7g0214181 | 57.870 | 216 | 90 | 1 | 1 | 216 | 1 | 215 | 1.35e-83 | 251 |
| Msa0570940 | MtrunA17_Chr7g0215601 | 53.478 | 230 | 106 | 1 | 2 | 231 | 3 | 231 | 4.59e-82 | 246 |
| Msa0570940 | MtrunA17_Chr5g0428281 | 56.604 | 212 | 91 | 1 | 5 | 216 | 6 | 216 | 4.76e-82 | 247 |
| Msa0570940 | MtrunA17_Chr7g0214191 | 56.481 | 216 | 93 | 1 | 1 | 216 | 1 | 215 | 6.10e-81 | 244 |
| Msa0570940 | MtrunA17_Chr5g0444031 | 50.655 | 229 | 112 | 1 | 4 | 232 | 24 | 251 | 4.41e-78 | 237 |
| Msa0570940 | MtrunA17_Chr8g0386001 | 47.479 | 238 | 120 | 4 | 5 | 238 | 4 | 240 | 4.66e-71 | 219 |
| Msa0570940 | MtrunA17_Chr2g0295681 | 43.182 | 220 | 124 | 1 | 9 | 228 | 5 | 223 | 2.73e-52 | 170 |
| Msa0570940 | MtrunA17_Chr3g0119951 | 40.930 | 215 | 126 | 1 | 4 | 217 | 3 | 217 | 8.74e-46 | 154 |
| Msa0570940 | MtrunA17_Chr8g0388621 | 38.235 | 238 | 144 | 3 | 11 | 246 | 12 | 248 | 4.94e-45 | 151 |
| Msa0570940 | MtrunA17_Chr6g0450941 | 43.842 | 203 | 110 | 3 | 11 | 210 | 83 | 284 | 1.41e-44 | 152 |
| Msa0570940 | MtrunA17_Chr3g0125861 | 37.281 | 228 | 135 | 5 | 11 | 233 | 7 | 231 | 2.83e-44 | 149 |
| Msa0570940 | MtrunA17_Chr2g0278491 | 47.097 | 155 | 80 | 1 | 56 | 210 | 1 | 153 | 3.23e-44 | 149 |
| Msa0570940 | MtrunA17_Chr3g0119991 | 40.816 | 196 | 115 | 1 | 23 | 217 | 1 | 196 | 4.21e-41 | 141 |
| Msa0570940 | MtrunA17_Chr8g0359261 | 38.164 | 207 | 124 | 3 | 13 | 217 | 18 | 222 | 6.29e-41 | 140 |
| Msa0570940 | MtrunA17_Chr1g0159431 | 35.294 | 221 | 139 | 3 | 10 | 228 | 6 | 224 | 7.43e-40 | 138 |
| Msa0570940 | MtrunA17_Chr6g0450951 | 40.426 | 188 | 108 | 3 | 29 | 213 | 5 | 191 | 4.13e-37 | 130 |
| Msa0570940 | MtrunA17_Chr1g0158931 | 31.390 | 223 | 150 | 1 | 6 | 225 | 3 | 225 | 1.70e-36 | 129 |
| Msa0570940 | MtrunA17_Chr2g0314571 | 33.803 | 213 | 135 | 4 | 13 | 222 | 18 | 227 | 6.32e-36 | 127 |
| Msa0570940 | MtrunA17_Chr6g0450931 | 40.212 | 189 | 107 | 5 | 29 | 213 | 5 | 191 | 5.88e-35 | 124 |
| Msa0570940 | MtrunA17_Chr4g0059191 | 36.923 | 195 | 120 | 2 | 25 | 217 | 1 | 194 | 2.25e-34 | 122 |
| Msa0570940 | MtrunA17_Chr3g0126421 | 30.508 | 236 | 151 | 4 | 13 | 240 | 10 | 240 | 2.94e-33 | 121 |
| Msa0570940 | MtrunA17_Chr3g0126411 | 30.833 | 240 | 159 | 4 | 6 | 240 | 3 | 240 | 2.21e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570940 | AT5G50800.1 | 57.676 | 241 | 100 | 2 | 1 | 240 | 1 | 240 | 3.69e-94 | 279 |
| Msa0570940 | AT5G50790.1 | 53.689 | 244 | 109 | 4 | 1 | 242 | 1 | 242 | 2.43e-91 | 271 |
| Msa0570940 | AT3G48740.1 | 54.918 | 244 | 101 | 4 | 4 | 242 | 6 | 245 | 5.70e-88 | 263 |
| Msa0570940 | AT5G23660.1 | 54.545 | 242 | 105 | 3 | 4 | 242 | 6 | 245 | 1.32e-87 | 262 |
| Msa0570940 | AT5G13170.1 | 55.963 | 218 | 91 | 3 | 9 | 225 | 11 | 224 | 5.51e-85 | 255 |
| Msa0570940 | AT4G25010.1 | 52.245 | 245 | 116 | 1 | 1 | 244 | 1 | 245 | 8.03e-85 | 254 |
| Msa0570940 | AT2G39060.1 | 49.772 | 219 | 108 | 2 | 9 | 227 | 9 | 225 | 5.56e-75 | 229 |
| Msa0570940 | AT4G15920.1 | 42.925 | 212 | 119 | 2 | 9 | 219 | 5 | 215 | 1.30e-53 | 174 |
| Msa0570940 | AT3G16690.1 | 41.589 | 214 | 123 | 2 | 9 | 221 | 5 | 217 | 1.72e-53 | 173 |
| Msa0570940 | AT3G16690.3 | 41.589 | 214 | 123 | 2 | 9 | 221 | 40 | 252 | 2.49e-53 | 174 |
| Msa0570940 | AT5G40260.1 | 40.444 | 225 | 129 | 5 | 10 | 230 | 9 | 232 | 2.61e-46 | 155 |
| Msa0570940 | AT5G62850.1 | 39.524 | 210 | 122 | 4 | 11 | 217 | 10 | 217 | 2.75e-45 | 152 |
| Msa0570940 | AT1G21460.1 | 36.771 | 223 | 135 | 4 | 11 | 230 | 7 | 226 | 6.69e-42 | 144 |
| Msa0570940 | AT4G10850.1 | 37.273 | 220 | 134 | 4 | 11 | 227 | 12 | 230 | 1.17e-41 | 143 |
| Msa0570940 | AT5G53190.1 | 34.728 | 239 | 142 | 4 | 13 | 247 | 10 | 238 | 3.07e-41 | 142 |
| Msa0570940 | AT5G40260.2 | 42.781 | 187 | 103 | 4 | 10 | 192 | 9 | 195 | 9.89e-40 | 137 |
| Msa0570940 | AT3G14770.1 | 35.885 | 209 | 129 | 4 | 11 | 216 | 16 | 222 | 6.83e-38 | 133 |
| Msa0570940 | AT1G66770.1 | 34.928 | 209 | 134 | 2 | 11 | 217 | 12 | 220 | 1.41e-37 | 133 |
| Msa0570940 | AT5G62850.2 | 38.919 | 185 | 108 | 4 | 11 | 192 | 10 | 192 | 1.25e-36 | 129 |
| Msa0570940 | AT3G28007.1 | 36.538 | 208 | 129 | 3 | 13 | 218 | 12 | 218 | 4.11e-34 | 124 |
| Msa0570940 | AT1G21460.2 | 37.113 | 194 | 116 | 4 | 11 | 201 | 7 | 197 | 1.58e-33 | 120 |
| Msa0570940 | AT3G16690.2 | 37.671 | 146 | 89 | 2 | 9 | 153 | 5 | 149 | 3.54e-25 | 99.0 |
Find 83 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAACTATTTGTAAATTT+TGG | 0.086099 | 4_1:-73392173 | None:intergenic |
| TAGTAGTAGTAGTACAATTA+TGG | 0.184890 | 4_1:-73394343 | None:intergenic |
| ATGTATACCCTTTGTTTCTT+TGG | 0.191930 | 4_1:-73393080 | None:intergenic |
| CTTCTCTTGCTGAATGTGTT+TGG | 0.204848 | 4_1:+73393240 | Msa0570940:CDS |
| ATGAGGTAAAAGAGTGTAAT+AGG | 0.205348 | 4_1:+73391841 | None:intergenic |
| GTTTCTTTGGGGCATAAATT+AGG | 0.220003 | 4_1:-73393067 | None:intergenic |
| AACAATTCCAAAAGTGTTAA+TGG | 0.230115 | 4_1:-73393018 | None:intergenic |
| CTTATCACCATTAACACTTT+TGG | 0.238695 | 4_1:+73393011 | Msa0570940:CDS |
| TGTATACCCTTTGTTTCTTT+GGG | 0.245646 | 4_1:-73393079 | None:intergenic |
| GAAATCTGCTGAAGGATTTC+AGG | 0.269542 | 4_1:+73392908 | Msa0570940:CDS |
| TTCTCTTGCTGAATGTGTTT+GGG | 0.283443 | 4_1:+73393241 | Msa0570940:CDS |
| TCTTCTATGGCCTTCTCCTC+AGG | 0.284550 | 4_1:+73393597 | Msa0570940:CDS |
| TTGCTGAATGTGTTTGGGTT+TGG | 0.294795 | 4_1:+73393246 | Msa0570940:CDS |
| TGATTTAAATTCGGTGTAAT+TGG | 0.311398 | 4_1:+73394257 | Msa0570940:three_prime_UTR |
| GCTGTTATGTGGTTCTTCTA+TGG | 0.316301 | 4_1:+73393584 | Msa0570940:CDS |
| TTATATGAAATTGAAAGTTT+AGG | 0.337684 | 4_1:-73394162 | None:intergenic |
| ATAGCAACATTTCTAAGCTT+TGG | 0.346131 | 4_1:+73394306 | Msa0570940:three_prime_UTR |
| ATAATTGATGTTGTGAAGAT+TGG | 0.346357 | 4_1:+73394038 | Msa0570940:CDS |
| TTGGATAGTGAATGGCGTTT+GGG | 0.373677 | 4_1:+73391878 | Msa0570940:five_prime_UTR |
| AGTAGTAGTAGTACAATTAT+GGG | 0.378902 | 4_1:-73394342 | None:intergenic |
| TGGCCATGACTCGTGAATCT+TGG | 0.380436 | 4_1:+73392212 | Msa0570940:CDS |
| CTCAACTCTTGACCCTTCAT+TGG | 0.382813 | 4_1:-73394005 | None:intergenic |
| GGCACCTCCACCTGCACGAT+TGG | 0.385028 | 4_1:-73394069 | None:intergenic |
| GGCCATGACTCGTGAATCTT+GGG | 0.392828 | 4_1:+73392213 | Msa0570940:CDS |
| GCACCTCCACCTGCACGATT+GGG | 0.405651 | 4_1:-73394068 | None:intergenic |
| AACACACTTGGATTTGTGTT+CGG | 0.406416 | 4_1:+73393924 | Msa0570940:CDS |
| TTTGAGATAGCTTGAATTGA+GGG | 0.410396 | 4_1:+73392096 | Msa0570940:five_prime_UTR |
| GAACCACATAACAGCATTGA+TGG | 0.426987 | 4_1:-73393576 | None:intergenic |
| TTATTATATTCAAGAAGAAA+TGG | 0.427125 | 4_1:+73392192 | Msa0570940:exon |
| TTTGGATAGTGAATGGCGTT+TGG | 0.427726 | 4_1:+73391877 | Msa0570940:five_prime_UTR |
| AACACAAATCCAAGTGTGTT+TGG | 0.437116 | 4_1:-73393921 | None:intergenic |
| TGGCGTTTGGGATGAACAAC+TGG | 0.438566 | 4_1:+73391890 | Msa0570940:five_prime_UTR |
| CTTCTATGGCCTTCTCCTCA+GGG | 0.446491 | 4_1:+73393598 | Msa0570940:CDS |
| GCAAAACGTCTTGCTATCAT+AGG | 0.455733 | 4_1:+73393306 | Msa0570940:CDS |
| TTTAACAATCGAGTACATTC+GGG | 0.465861 | 4_1:+73394108 | Msa0570940:three_prime_UTR |
| AAAGGTGTGTGATTTAAATT+CGG | 0.469972 | 4_1:+73394248 | Msa0570940:three_prime_UTR |
| TAACCATCAATGCTGTTATG+TGG | 0.489473 | 4_1:+73393573 | Msa0570940:CDS |
| GGTGGTAGAGGCACCAATGA+AGG | 0.494736 | 4_1:+73393992 | Msa0570940:CDS |
| TCAGGCACTTCCTTATGTTG+TGG | 0.494964 | 4_1:+73392926 | Msa0570940:CDS |
| CATAGTAATCCCTGAGGAGA+AGG | 0.500559 | 4_1:-73393607 | None:intergenic |
| TGAGGTAAAAGAGTGTAATA+GGG | 0.504441 | 4_1:+73391842 | None:intergenic |
| AGGCAACATCATTTCCTTTG+CGG | 0.507976 | 4_1:+73392750 | Msa0570940:intron |
| TTCATTGGTGCCTCTACCAC+CGG | 0.508469 | 4_1:-73393990 | None:intergenic |
| AAATGCTACACCGGTGGTAG+AGG | 0.509728 | 4_1:+73393980 | Msa0570940:CDS |
| GTATACCCTTTGTTTCTTTG+GGG | 0.510779 | 4_1:-73393078 | None:intergenic |
| GACCCCAATCGTGCAGGTGG+AGG | 0.519554 | 4_1:+73394065 | Msa0570940:CDS |
| CCATGCAGAGCAAAGTCATA+AGG | 0.521017 | 4_1:+73393507 | Msa0570940:intron |
| AAGTGTATTTGGATAGTGAA+TGG | 0.521217 | 4_1:+73391870 | Msa0570940:five_prime_UTR |
| CAAGAAGGGTGCTTAGCCTC+TGG | 0.528977 | 4_1:+73394197 | Msa0570940:three_prime_UTR |
| AGCCCAAGATTCACGAGTCA+TGG | 0.538849 | 4_1:-73392215 | None:intergenic |
| TCAACTCTCTACCTCTCAAA+GGG | 0.539975 | 4_1:+73393282 | Msa0570940:CDS |
| TAATATTGTAAAATGCAAGA+AGG | 0.541132 | 4_1:+73394182 | Msa0570940:three_prime_UTR |
| TTAAAATCAGACTTTGCTAA+CGG | 0.544654 | 4_1:-73394090 | None:intergenic |
| TGTGTTCGGCATAATTCAGA+TGG | 0.552676 | 4_1:+73393938 | Msa0570940:CDS |
| ATCAACTCTCTACCTCTCAA+AGG | 0.553313 | 4_1:+73393281 | Msa0570940:CDS |
| GGAAACGACCCCAATCGTGC+AGG | 0.560744 | 4_1:+73394059 | Msa0570940:CDS |
| AATATTGTAAAATGCAAGAA+GGG | 0.562824 | 4_1:+73394183 | Msa0570940:three_prime_UTR |
| TTTATGCCCCAAAGAAACAA+AGG | 0.567569 | 4_1:+73393072 | Msa0570940:CDS |
| TTCAAGAAGAAATCTGCTGA+AGG | 0.570150 | 4_1:+73392900 | Msa0570940:CDS |
| AACGACCCCAATCGTGCAGG+TGG | 0.576027 | 4_1:+73394062 | Msa0570940:CDS |
| TTATGCCCCAAAGAAACAAA+GGG | 0.578048 | 4_1:+73393073 | Msa0570940:CDS |
| AACGTCTTGCTATCATAGGA+TGG | 0.590309 | 4_1:+73393310 | Msa0570940:CDS |
| GTGGTAGAGGCACCAATGAA+GGG | 0.591402 | 4_1:+73393993 | Msa0570940:CDS |
| ATGCAGCTACCAAACACACT+TGG | 0.593312 | 4_1:+73393912 | Msa0570940:intron |
| CACCTCCACCTGCACGATTG+GGG | 0.600426 | 4_1:-73394067 | None:intergenic |
| AGAGCAAAGTCATAAGGTCG+AGG | 0.607979 | 4_1:+73393513 | Msa0570940:intron |
| GAACATCGATTACGTATACA+AGG | 0.615675 | 4_1:-73394439 | None:intergenic |
| CAAACACATTCAGCAAGAGA+AGG | 0.625179 | 4_1:-73393239 | None:intergenic |
| AAACTAAATACTTATACCAG+AGG | 0.635792 | 4_1:-73394213 | None:intergenic |
| GATATATAGAAATGCTACAC+CGG | 0.637638 | 4_1:+73393971 | Msa0570940:CDS |
| GTAGAGAGTTGATAGAAGCA+TGG | 0.638407 | 4_1:-73393271 | None:intergenic |
| ATACTTACAATGACGAAGAG+AGG | 0.639522 | 4_1:-73393369 | None:intergenic |
| ATACACTTATGTTGAAAACA+AGG | 0.640633 | 4_1:-73393338 | None:intergenic |
| CAATTATGGGAGTGTTACGA+TGG | 0.655660 | 4_1:-73394329 | None:intergenic |
| TGGTGAGAGGAACACCGCAA+AGG | 0.662139 | 4_1:-73392764 | None:intergenic |
| GTTCGGCATAATTCAGATGG+TGG | 0.664212 | 4_1:+73393941 | Msa0570940:CDS |
| TGGTTACTTACAATGGTGAG+AGG | 0.666494 | 4_1:-73392777 | None:intergenic |
| CTTGAAATGAGTTTGACTGA+GGG | 0.667963 | 4_1:-73394407 | None:intergenic |
| AAGGGTCAAGAGTTGAGTGG+TGG | 0.679444 | 4_1:+73394011 | Msa0570940:CDS |
| ACTTGAAATGAGTTTGACTG+AGG | 0.693520 | 4_1:-73394408 | None:intergenic |
| ATATAGAAATGCTACACCGG+TGG | 0.693921 | 4_1:+73393974 | Msa0570940:CDS |
| ATGAAGGGTCAAGAGTTGAG+TGG | 0.696772 | 4_1:+73394008 | Msa0570940:CDS |
| CAGCAACATAGTAATCCCTG+AGG | 0.763737 | 4_1:-73393613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAACTATTTGTAAATTT+TGG | - | chr4_1:73392176-73392195 | None:intergenic | 10.0% |
| !! | AAAAAATCAAATATATATGT+AGG | + | chr4_1:73392673-73392692 | Msa0570940:intron | 10.0% |
| !!! | ATAGTAAAGTTTTTTTTATA+AGG | - | chr4_1:73393155-73393174 | None:intergenic | 10.0% |
| !!! | TAGTTTTATTATTAATGTAA+AGG | + | chr4_1:73394230-73394249 | Msa0570940:three_prime_UTR | 10.0% |
| !!! | AGTTTAGTGTTTTAAATTAA+AGG | + | chr4_1:73391918-73391937 | Msa0570940:intron | 15.0% |
| !! | TTATTATATTCAAGAAGAAA+TGG | + | chr4_1:73392192-73392211 | Msa0570940:exon | 15.0% |
| !!! | TTCTAGTTTATTTTTATAAG+CGG | + | chr4_1:73392425-73392444 | Msa0570940:intron | 15.0% |
| !!! | ATTTTAATTAGCATGTTAAT+TGG | + | chr4_1:73392548-73392567 | Msa0570940:intron | 15.0% |
| !! | TAATTTACAAGAAAACAAAA+TGG | - | chr4_1:73392800-73392819 | None:intergenic | 15.0% |
| !! | ATATATACATATATACGTTT+AGG | - | chr4_1:73392849-73392868 | None:intergenic | 15.0% |
| !! | AAATCAAATATGAAGTTAAA+GGG | - | chr4_1:73393688-73393707 | None:intergenic | 15.0% |
| !!! | AATTAGAAAACTTTTCATAT+AGG | + | chr4_1:73393846-73393865 | Msa0570940:intron | 15.0% |
| !! | TTATATGAAATTGAAAGTTT+AGG | - | chr4_1:73394165-73394184 | None:intergenic | 15.0% |
| !! | GAAAATGATGATATAAATGA+GGG | - | chr4_1:73392378-73392397 | None:intergenic | 20.0% |
| !! | AGAAAATGATGATATAAATG+AGG | - | chr4_1:73392379-73392398 | None:intergenic | 20.0% |
| !!! | AAAAGCTAACGTTAAATTTT+AGG | - | chr4_1:73392502-73392521 | None:intergenic | 20.0% |
| !!! | ATTTTACTCTAAAGAACATT+TGG | - | chr4_1:73392530-73392549 | None:intergenic | 20.0% |
| !! | ATGTATATATTTGTATATGC+AGG | + | chr4_1:73392859-73392878 | Msa0570940:intron | 20.0% |
| !! | TATCATTTGCTCATTTAATT+GGG | - | chr4_1:73393455-73393474 | None:intergenic | 20.0% |
| !! | TTATCATTTGCTCATTTAAT+TGG | - | chr4_1:73393456-73393475 | None:intergenic | 20.0% |
| !! | TATCTTCTATACAAACAAAT+GGG | - | chr4_1:73393664-73393683 | None:intergenic | 20.0% |
| !! | ATATCTTCTATACAAACAAA+TGG | - | chr4_1:73393665-73393684 | None:intergenic | 20.0% |
| !! | CAAATCAAATATGAAGTTAA+AGG | - | chr4_1:73393689-73393708 | None:intergenic | 20.0% |
| !! | TAATTAAGAAAATTGGTAGA+GGG | - | chr4_1:73393814-73393833 | None:intergenic | 20.0% |
| !! | GTTAACGTAATTAAGAAAAT+TGG | - | chr4_1:73393821-73393840 | None:intergenic | 20.0% |
| !!! | ATTGAATCTTTTCTTCTTTT+TGG | + | chr4_1:73393884-73393903 | Msa0570940:intron | 20.0% |
| !! | TAATATTGTAAAATGCAAGA+AGG | + | chr4_1:73394182-73394201 | Msa0570940:three_prime_UTR | 20.0% |
| !! | AATATTGTAAAATGCAAGAA+GGG | + | chr4_1:73394183-73394202 | Msa0570940:three_prime_UTR | 20.0% |
| !! | ATAGGGTAAAAAAGTGTATT+TGG | + | chr4_1:73391859-73391878 | Msa0570940:five_prime_UTR | 25.0% |
| ! | AATAATATATGCATGGCTTA+TGG | - | chr4_1:73392280-73392299 | None:intergenic | 25.0% |
| ! | GAAAAGCAATAATATATGCA+TGG | - | chr4_1:73392287-73392306 | None:intergenic | 25.0% |
| ! | GAAGATGATATTGATGAATA+AGG | - | chr4_1:73392408-73392427 | None:intergenic | 25.0% |
| ! | AATCTGTATGTATGTTAACA+CGG | - | chr4_1:73392576-73392595 | None:intergenic | 25.0% |
| !!! | CTTTTTGTCATTGTTTTTAC+AGG | + | chr4_1:73392730-73392749 | Msa0570940:intron | 25.0% |
| ! | AACAAAATGGTTACTTACAA+TGG | - | chr4_1:73392787-73392806 | None:intergenic | 25.0% |
| ! | TTGAAGATTACGTAAAAAGT+TGG | - | chr4_1:73392885-73392904 | None:intergenic | 25.0% |
| !!! | AACAATTCCAAAAGTGTTAA+TGG | - | chr4_1:73393021-73393040 | None:intergenic | 25.0% |
| ! | ATACACTTATGTTGAAAACA+AGG | - | chr4_1:73393341-73393360 | None:intergenic | 25.0% |
| ! | AAAAAGAAGGACAAGAAAAA+TGG | - | chr4_1:73393554-73393573 | None:intergenic | 25.0% |
| !! | TTTTATGTGCTTCATTAATG+TGG | + | chr4_1:73393750-73393769 | Msa0570940:intron | 25.0% |
| ! | AATTAAGAAAATTGGTAGAG+GGG | - | chr4_1:73393813-73393832 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAATTGGTAG+AGG | - | chr4_1:73393815-73393834 | None:intergenic | 25.0% |
| ! | ATAATTGATGTTGTGAAGAT+TGG | + | chr4_1:73394038-73394057 | Msa0570940:CDS | 25.0% |
| ! | TTAAAATCAGACTTTGCTAA+CGG | - | chr4_1:73394093-73394112 | None:intergenic | 25.0% |
| !! | TTTTAACAATCGAGTACATT+CGG | + | chr4_1:73394107-73394126 | Msa0570940:three_prime_UTR | 25.0% |
| ! | AAACTAAATACTTATACCAG+AGG | - | chr4_1:73394216-73394235 | None:intergenic | 25.0% |
| !! | AAAGGTGTGTGATTTAAATT+CGG | + | chr4_1:73394248-73394267 | Msa0570940:three_prime_UTR | 25.0% |
| !!! | TGATTTAAATTCGGTGTAAT+TGG | + | chr4_1:73394257-73394276 | Msa0570940:three_prime_UTR | 25.0% |
| ! | AGTAGTAGTAGTACAATTAT+GGG | - | chr4_1:73394345-73394364 | None:intergenic | 25.0% |
| ! | TAGTAGTAGTAGTACAATTA+TGG | - | chr4_1:73394346-73394365 | None:intergenic | 25.0% |
| !! | CAATTCGTTTTCATTAATAC+TGG | - | chr4_1:73394464-73394483 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAATTTTGTCGT+TGG | + | chr4_1:73394482-73394501 | Msa0570940:three_prime_UTR | 25.0% |
| AAGTGTATTTGGATAGTGAA+TGG | + | chr4_1:73391870-73391889 | Msa0570940:five_prime_UTR | 30.0% | |
| !!! | TTTTGAGATAGCTTGAATTG+AGG | + | chr4_1:73392095-73392114 | Msa0570940:five_prime_UTR | 30.0% |
| ! | TTTGAGATAGCTTGAATTGA+GGG | + | chr4_1:73392096-73392115 | Msa0570940:five_prime_UTR | 30.0% |
| ATGATATAAATGAGGGTTTG+GGG | - | chr4_1:73392371-73392390 | None:intergenic | 30.0% | |
| GATGATATAAATGAGGGTTT+GGG | - | chr4_1:73392372-73392391 | None:intergenic | 30.0% | |
| TGATGATATAAATGAGGGTT+TGG | - | chr4_1:73392373-73392392 | None:intergenic | 30.0% | |
| TGATATTGATGAATAAGGAG+AGG | - | chr4_1:73392403-73392422 | None:intergenic | 30.0% | |
| !! | ATCTAGTTTGTTATGCTTGT+TGG | + | chr4_1:73392457-73392476 | Msa0570940:intron | 30.0% |
| TAACATACATACAGATTGCA+TGG | + | chr4_1:73392579-73392598 | Msa0570940:intron | 30.0% | |
| ! | CTTATCACCATTAACACTTT+TGG | + | chr4_1:73393011-73393030 | Msa0570940:CDS | 30.0% |
| ! | TGTATACCCTTTGTTTCTTT+GGG | - | chr4_1:73393082-73393101 | None:intergenic | 30.0% |
| ! | ATGTATACCCTTTGTTTCTT+TGG | - | chr4_1:73393083-73393102 | None:intergenic | 30.0% |
| !! | AGCATTGATGGTTAAAAAGA+AGG | - | chr4_1:73393567-73393586 | None:intergenic | 30.0% |
| TATACAAACAAATGGGAAAG+TGG | - | chr4_1:73393657-73393676 | None:intergenic | 30.0% | |
| ! | CACTTAGATGTTTCTTTTCA+TGG | - | chr4_1:73393781-73393800 | None:intergenic | 30.0% |
| AGAAACATCTAAGTGCTATA+TGG | + | chr4_1:73393786-73393805 | Msa0570940:intron | 30.0% | |
| GATATATAGAAATGCTACAC+CGG | + | chr4_1:73393971-73393990 | Msa0570940:CDS | 30.0% | |
| TTTAACAATCGAGTACATTC+GGG | + | chr4_1:73394108-73394127 | Msa0570940:three_prime_UTR | 30.0% | |
| ATAGCAACATTTCTAAGCTT+TGG | + | chr4_1:73394306-73394325 | Msa0570940:three_prime_UTR | 30.0% | |
| !!! | GAATCTTGGGCTTTTGTTTT+CGG | + | chr4_1:73392226-73392245 | Msa0570940:CDS | 35.0% |
| !!! | GCTTTTGTTTTCGGCATTAT+AGG | + | chr4_1:73392235-73392254 | Msa0570940:CDS | 35.0% |
| TTCAAGAAGAAATCTGCTGA+AGG | + | chr4_1:73392900-73392919 | Msa0570940:CDS | 35.0% | |
| !! | CTAAAAAGTGCCACAACATA+AGG | - | chr4_1:73392939-73392958 | None:intergenic | 35.0% |
| !! | CACTTTTTAGTGCAATGCTT+TGG | + | chr4_1:73392949-73392968 | Msa0570940:CDS | 35.0% |
| !! | GTTTCTTTGGGGCATAAATT+AGG | - | chr4_1:73393070-73393089 | None:intergenic | 35.0% |
| TTTATGCCCCAAAGAAACAA+AGG | + | chr4_1:73393072-73393091 | Msa0570940:CDS | 35.0% | |
| TTATGCCCCAAAGAAACAAA+GGG | + | chr4_1:73393073-73393092 | Msa0570940:CDS | 35.0% | |
| ! | GTATACCCTTTGTTTCTTTG+GGG | - | chr4_1:73393081-73393100 | None:intergenic | 35.0% |
| TTCTCTTGCTGAATGTGTTT+GGG | + | chr4_1:73393241-73393260 | Msa0570940:CDS | 35.0% | |
| ATACTTACAATGACGAAGAG+AGG | - | chr4_1:73393372-73393391 | None:intergenic | 35.0% | |
| TAACCATCAATGCTGTTATG+TGG | + | chr4_1:73393573-73393592 | Msa0570940:CDS | 35.0% | |
| AACACAAATCCAAGTGTGTT+TGG | - | chr4_1:73393924-73393943 | None:intergenic | 35.0% | |
| AACACACTTGGATTTGTGTT+CGG | + | chr4_1:73393924-73393943 | Msa0570940:CDS | 35.0% | |
| ! | TTCGGTGTAATTGGCAAAAA+TGG | + | chr4_1:73394266-73394285 | Msa0570940:three_prime_UTR | 35.0% |
| CTTGAAATGAGTTTGACTGA+GGG | - | chr4_1:73394410-73394429 | None:intergenic | 35.0% | |
| ACTTGAAATGAGTTTGACTG+AGG | - | chr4_1:73394411-73394430 | None:intergenic | 35.0% | |
| ! | GAACATCGATTACGTATACA+AGG | - | chr4_1:73394442-73394461 | None:intergenic | 35.0% |
| TTTGGATAGTGAATGGCGTT+TGG | + | chr4_1:73391877-73391896 | Msa0570940:five_prime_UTR | 40.0% | |
| TTGGATAGTGAATGGCGTTT+GGG | + | chr4_1:73391878-73391897 | Msa0570940:five_prime_UTR | 40.0% | |
| AAGTACACACTAGTTGAGCA+TGG | - | chr4_1:73392002-73392021 | None:intergenic | 40.0% | |
| !! | ATTCTATGCATATCGACTCG+TGG | + | chr4_1:73392046-73392065 | Msa0570940:intron | 40.0% |
| ATACAGATTGCATGGCGATA+TGG | + | chr4_1:73392587-73392606 | Msa0570940:intron | 40.0% | |
| AGGCAACATCATTTCCTTTG+CGG | + | chr4_1:73392750-73392769 | Msa0570940:intron | 40.0% | |
| TGGTTACTTACAATGGTGAG+AGG | - | chr4_1:73392780-73392799 | None:intergenic | 40.0% | |
| GAAATCTGCTGAAGGATTTC+AGG | + | chr4_1:73392908-73392927 | Msa0570940:CDS | 40.0% | |
| ! | CAGCAAGAGAAGGAGTTTTA+TGG | - | chr4_1:73393232-73393251 | None:intergenic | 40.0% |
| CAAACACATTCAGCAAGAGA+AGG | - | chr4_1:73393242-73393261 | None:intergenic | 40.0% | |
| CTTCTCTTGCTGAATGTGTT+TGG | + | chr4_1:73393240-73393259 | Msa0570940:CDS | 40.0% | |
| ! | TTGCTGAATGTGTTTGGGTT+TGG | + | chr4_1:73393246-73393265 | Msa0570940:CDS | 40.0% |
| !! | GTAGAGAGTTGATAGAAGCA+TGG | - | chr4_1:73393274-73393293 | None:intergenic | 40.0% |
| ATCAACTCTCTACCTCTCAA+AGG | + | chr4_1:73393281-73393300 | Msa0570940:CDS | 40.0% | |
| TCAACTCTCTACCTCTCAAA+GGG | + | chr4_1:73393282-73393301 | Msa0570940:CDS | 40.0% | |
| ! | GCAAAACGTCTTGCTATCAT+AGG | + | chr4_1:73393306-73393325 | Msa0570940:CDS | 40.0% |
| ! | AACGTCTTGCTATCATAGGA+TGG | + | chr4_1:73393310-73393329 | Msa0570940:CDS | 40.0% |
| ! | GAACCACATAACAGCATTGA+TGG | - | chr4_1:73393579-73393598 | None:intergenic | 40.0% |
| GCTGTTATGTGGTTCTTCTA+TGG | + | chr4_1:73393584-73393603 | Msa0570940:CDS | 40.0% | |
| TGTGTTCGGCATAATTCAGA+TGG | + | chr4_1:73393938-73393957 | Msa0570940:CDS | 40.0% | |
| ATATAGAAATGCTACACCGG+TGG | + | chr4_1:73393974-73393993 | Msa0570940:CDS | 40.0% | |
| !! | CAATTATGGGAGTGTTACGA+TGG | - | chr4_1:73394332-73394351 | None:intergenic | 40.0% |
| TGGGGTGATAGAGAAAGAAG+TGG | - | chr4_1:73392353-73392372 | None:intergenic | 45.0% | |
| TCAGGCACTTCCTTATGTTG+TGG | + | chr4_1:73392926-73392945 | Msa0570940:CDS | 45.0% | |
| ATGACTTTGCTCTGCATGGA+AGG | - | chr4_1:73393506-73393525 | None:intergenic | 45.0% | |
| CCTTATGACTTTGCTCTGCA+TGG | - | chr4_1:73393510-73393529 | None:intergenic | 45.0% | |
| CCATGCAGAGCAAAGTCATA+AGG | + | chr4_1:73393507-73393526 | Msa0570940:intron | 45.0% | |
| AGAGCAAAGTCATAAGGTCG+AGG | + | chr4_1:73393513-73393532 | Msa0570940:intron | 45.0% | |
| CATAGTAATCCCTGAGGAGA+AGG | - | chr4_1:73393610-73393629 | None:intergenic | 45.0% | |
| CAGCAACATAGTAATCCCTG+AGG | - | chr4_1:73393616-73393635 | None:intergenic | 45.0% | |
| ATGCAGCTACCAAACACACT+TGG | + | chr4_1:73393912-73393931 | Msa0570940:intron | 45.0% | |
| GTTCGGCATAATTCAGATGG+TGG | + | chr4_1:73393941-73393960 | Msa0570940:CDS | 45.0% | |
| CTCAACTCTTGACCCTTCAT+TGG | - | chr4_1:73394008-73394027 | None:intergenic | 45.0% | |
| ATGAAGGGTCAAGAGTTGAG+TGG | + | chr4_1:73394008-73394027 | Msa0570940:CDS | 45.0% | |
| !! | TTCAAAAAAATAAATATTAA+AGG | + | chr4_1:73391941-73391960 | Msa0570940:intron | 5.0% |
| ! | TGGCGTTTGGGATGAACAAC+TGG | + | chr4_1:73391890-73391909 | Msa0570940:five_prime_UTR | 50.0% |
| TGGCCATGACTCGTGAATCT+TGG | + | chr4_1:73392212-73392231 | Msa0570940:CDS | 50.0% | |
| GGCCATGACTCGTGAATCTT+GGG | + | chr4_1:73392213-73392232 | Msa0570940:CDS | 50.0% | |
| AGCCCAAGATTCACGAGTCA+TGG | - | chr4_1:73392218-73392237 | None:intergenic | 50.0% | |
| ! | GACGTTTTGCTCCCTTTGAG+AGG | - | chr4_1:73393296-73393315 | None:intergenic | 50.0% |
| TCTTCTATGGCCTTCTCCTC+AGG | + | chr4_1:73393597-73393616 | Msa0570940:CDS | 50.0% | |
| CTTCTATGGCCTTCTCCTCA+GGG | + | chr4_1:73393598-73393617 | Msa0570940:CDS | 50.0% | |
| AAATGCTACACCGGTGGTAG+AGG | + | chr4_1:73393980-73393999 | Msa0570940:CDS | 50.0% | |
| ! | TTCATTGGTGCCTCTACCAC+CGG | - | chr4_1:73393993-73394012 | None:intergenic | 50.0% |
| !! | GTGGTAGAGGCACCAATGAA+GGG | + | chr4_1:73393993-73394012 | Msa0570940:CDS | 50.0% |
| AAGGGTCAAGAGTTGAGTGG+TGG | + | chr4_1:73394011-73394030 | Msa0570940:CDS | 50.0% | |
| TGGTGAGAGGAACACCGCAA+AGG | - | chr4_1:73392767-73392786 | None:intergenic | 55.0% | |
| !! | GGTGGTAGAGGCACCAATGA+AGG | + | chr4_1:73393992-73394011 | Msa0570940:CDS | 55.0% |
| !! | CAAGAAGGGTGCTTAGCCTC+TGG | + | chr4_1:73394197-73394216 | Msa0570940:three_prime_UTR | 55.0% |
| GGAAACGACCCCAATCGTGC+AGG | + | chr4_1:73394059-73394078 | Msa0570940:CDS | 60.0% | |
| AACGACCCCAATCGTGCAGG+TGG | + | chr4_1:73394062-73394081 | Msa0570940:CDS | 60.0% | |
| CACCTCCACCTGCACGATTG+GGG | - | chr4_1:73394070-73394089 | None:intergenic | 60.0% | |
| GCACCTCCACCTGCACGATT+GGG | - | chr4_1:73394071-73394090 | None:intergenic | 60.0% | |
| GACCCCAATCGTGCAGGTGG+AGG | + | chr4_1:73394065-73394084 | Msa0570940:CDS | 65.0% | |
| GGCACCTCCACCTGCACGAT+TGG | - | chr4_1:73394072-73394091 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73391848 | 73394530 | 73391848 | ID=Msa0570940;Name=Msa0570940 |
| chr4_1 | mRNA | 73391848 | 73394530 | 73391848 | ID=Msa0570940-mRNA-1;Parent=Msa0570940;Name=Msa0570940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=234|1|1|1|0.83|0.71|7|424|255 |
| chr4_1 | exon | 73391848 | 73391933 | 73391848 | ID=Msa0570940-mRNA-1:exon:25176;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73392063 | 73392256 | 73392063 | ID=Msa0570940-mRNA-1:exon:25177;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73392752 | 73392788 | 73392752 | ID=Msa0570940-mRNA-1:exon:25178;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73392881 | 73393094 | 73392881 | ID=Msa0570940-mRNA-1:exon:25179;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73393222 | 73393383 | 73393222 | ID=Msa0570940-mRNA-1:exon:25180;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73393515 | 73393634 | 73393515 | ID=Msa0570940-mRNA-1:exon:25181;Parent=Msa0570940-mRNA-1 |
| chr4_1 | exon | 73393918 | 73394530 | 73393918 | ID=Msa0570940-mRNA-1:exon:25182;Parent=Msa0570940-mRNA-1 |
| chr4_1 | five_prime_UTR | 73391848 | 73391933 | 73391848 | ID=Msa0570940-mRNA-1:five_prime_utr;Parent=Msa0570940-mRNA-1 |
| chr4_1 | five_prime_UTR | 73392063 | 73392210 | 73392063 | ID=Msa0570940-mRNA-1:five_prime_utr;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73392211 | 73392256 | 73392211 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73392752 | 73392788 | 73392752 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73392881 | 73393094 | 73392881 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73393222 | 73393383 | 73393222 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73393515 | 73393634 | 73393515 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | CDS | 73393918 | 73394106 | 73393918 | ID=Msa0570940-mRNA-1:cds;Parent=Msa0570940-mRNA-1 |
| chr4_1 | three_prime_UTR | 73394107 | 73394530 | 73394107 | ID=Msa0570940-mRNA-1:three_prime_utr;Parent=Msa0570940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
