AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563140 MtrunA17_Chr8g0376971 95.303 660 30 1 1 659 1 660 0.0 1307
Msa0563140 MtrunA17_Chr3g0122941 58.430 688 235 18 1 659 1 666 0.0 732
Msa0563140 MtrunA17_Chr6g0458951 48.726 667 299 17 1 635 1 656 0.0 540
Msa0563140 MtrunA17_Chr7g0276681 29.167 288 168 7 99 382 40 295 3.53e-19 91.7
Msa0563140 MtrunA17_Chr7g0263421 30.366 191 115 3 106 295 53 226 1.15e-15 80.5
Msa0563140 MtrunA17_Chr2g0327711 31.282 195 118 3 102 296 66 244 1.31e-15 80.1
Msa0563140 MtrunA17_Chr2g0327711 26.241 282 171 8 106 382 31 280 1.58e-15 80.1
Msa0563140 MtrunA17_Chr2g0327711 27.568 185 118 3 221 405 101 269 1.76e-13 73.6
Msa0563140 MtrunA17_Chr4g0030551 30.818 159 91 3 188 345 108 248 3.15e-15 79.0
Msa0563140 MtrunA17_Chr7g0263471 29.798 198 121 5 189 386 162 341 4.43e-14 75.5
Msa0563140 MtrunA17_Chr2g0331191 27.717 184 109 4 220 382 139 319 8.45e-14 74.7
Msa0563140 MtrunA17_Chr1g0212971 29.091 220 128 5 102 320 131 323 2.88e-13 73.2
Msa0563140 MtrunA17_Chr1g0212971 26.316 285 178 8 105 389 100 352 1.16e-11 67.8
Msa0563140 MtrunA17_Chr1g0161231 27.962 211 133 5 188 398 94 285 8.45e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563140 AT3G01750.2 49.655 580 263 8 1 559 1 572 0.0 539
Msa0563140 AT3G01750.1 49.655 580 263 8 1 559 1 572 0.0 539
Msa0563140 AT3G04140.1 44.048 672 321 17 1 650 1 639 9.71e-163 482
Msa0563140 AT2G31820.1 28.472 288 170 7 99 382 148 403 3.21e-18 89.4
Msa0563140 AT1G07710.2 26.950 282 171 9 105 382 30 280 1.77e-15 80.5
Msa0563140 AT1G07710.2 30.698 215 128 7 98 311 99 293 5.59e-14 75.5
Msa0563140 AT1G07710.2 32.487 197 113 5 102 296 66 244 1.27e-13 74.3
Msa0563140 AT1G07710.2 26.147 218 144 4 188 405 69 269 3.99e-13 72.8
Msa0563140 AT1G07710.1 26.950 282 171 9 105 382 30 280 1.77e-15 80.5
Msa0563140 AT1G07710.1 30.698 215 128 7 98 311 99 293 5.59e-14 75.5
Msa0563140 AT1G07710.1 32.487 197 113 5 102 296 66 244 1.27e-13 74.3
Msa0563140 AT1G07710.1 26.147 218 144 4 188 405 69 269 3.99e-13 72.8
Msa0563140 AT5G02620.4 28.571 196 120 5 188 382 94 270 2.58e-13 73.6
Msa0563140 AT5G02620.4 29.949 197 120 5 102 297 56 235 2.96e-11 67.0
Msa0563140 AT5G02620.1 28.571 196 120 5 188 382 94 270 2.58e-13 73.6
Msa0563140 AT5G02620.1 29.949 197 120 5 102 297 56 235 2.96e-11 67.0
Msa0563140 AT5G02620.3 28.571 196 120 5 188 382 94 270 2.58e-13 73.6
Msa0563140 AT5G02620.3 29.949 197 120 5 102 297 56 235 2.96e-11 67.0
Msa0563140 AT5G54610.1 26.190 210 143 5 184 391 36 235 9.03e-13 71.2
Msa0563140 AT5G02620.5 31.875 160 90 4 188 346 94 235 1.71e-12 70.9
Msa0563140 AT5G02620.5 29.949 197 120 5 102 297 56 235 4.12e-11 66.6
Msa0563140 AT5G02620.2 31.875 160 90 4 188 346 94 235 1.71e-12 70.9
Msa0563140 AT5G02620.2 29.949 197 120 5 102 297 56 235 4.12e-11 66.6
Msa0563140 AT5G60070.1 28.378 222 130 6 190 404 113 312 6.76e-12 68.9
Msa0563140 AT5G60070.1 29.744 195 122 3 102 296 73 252 7.98e-12 68.6
Msa0563140 AT1G03670.1 36.364 132 74 4 183 306 35 164 1.14e-11 68.6
Msa0563140 AT5G51160.1 27.941 204 122 5 208 399 29 219 1.34e-11 67.8
Msa0563140 AT3G09550.1 27.225 191 121 4 188 378 181 353 1.59e-11 67.8
Msa0563140 AT3G09550.3 27.225 191 121 4 188 378 181 353 1.59e-11 67.8
Msa0563140 AT3G09550.2 27.225 191 121 4 188 378 188 360 1.69e-11 67.8
Msa0563140 AT2G01680.1 27.411 197 127 4 197 393 70 250 2.40e-11 67.0
Msa0563140 AT1G05640.1 27.374 179 114 4 215 393 182 344 9.35e-11 65.5

Find 119 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATTTCTTATTA+TGG 0.192328 4_1:-63449380 None:intergenic
GCAAGACTAGTGGTGTTAAT+TGG 0.207448 4_1:+63448947 Msa0563140:CDS
AAGAATTTCCAATCTCATTA+AGG 0.265370 4_1:+63449091 Msa0563140:CDS
TGCTGCTTCTGCTGGTGATT+TGG 0.292656 4_1:+63447251 Msa0563140:CDS
ATCATCGTCTTCAAATTCTA+AGG 0.293118 4_1:-63449028 None:intergenic
TCTCTCATTCGTGGTGGATA+TGG 0.311166 4_1:+63447210 Msa0563140:CDS
TATCTTTGCCTTAATGAGAT+TGG 0.319231 4_1:-63449099 None:intergenic
GGACTGCCCTCTTGCTCTAA+TGG 0.319309 4_1:+63449309 Msa0563140:CDS
CTGGCTGGTTGCAGGCTAAA+TGG 0.321880 4_1:-63446648 None:intergenic
TCTAATGCAAGGTGTAATTA+AGG 0.322519 4_1:+63449215 Msa0563140:CDS
TCAGTAGAGTTTACAATATC+AGG 0.332328 4_1:-63448256 None:intergenic
ACAAATTGCTGGCTGGTTGC+AGG 0.333847 4_1:-63446656 None:intergenic
AACCAGCCAGCAATTTGTTT+TGG 0.335313 4_1:+63446661 Msa0563140:five_prime_UTR
TGATATTCTAAATGAAGTTC+CGG 0.337345 4_1:-63448806 None:intergenic
ACAAAAGAACACTATCTATA+AGG 0.350958 4_1:+63449148 Msa0563140:CDS
CTCCTTATAGTTCAACTGTT+GGG 0.368527 4_1:-63449352 None:intergenic
AGATTGTGGTATTGTTGAAT+TGG 0.372361 4_1:+63447419 Msa0563140:CDS
TTGTATACTGCTGCTTCTGC+TGG 0.379152 4_1:+63447243 Msa0563140:CDS
TTAATAATTCTGTAAGTTCA+AGG 0.385745 4_1:+63449055 Msa0563140:CDS
TTTCTTCATATGGCAGTGTA+TGG 0.393239 4_1:+63448397 Msa0563140:CDS
CTGCTGCTAGAGGAGGGAAT+TGG 0.395808 4_1:+63447499 Msa0563140:CDS
CTTGTACTTCACTGTTTACA+AGG 0.398911 4_1:+63446700 Msa0563140:five_prime_UTR
TGCTGCTAGAGGAGGGAATT+GGG 0.409718 4_1:+63447500 Msa0563140:CDS
AATTCAGAAGATCTTGATCT+TGG 0.413086 4_1:-63448673 None:intergenic
TTCTTACTTTCCTCTACGTT+GGG 0.414168 4_1:+63446936 Msa0563140:CDS
TGGAGCACAAGGGCAGGCTT+TGG 0.420864 4_1:+63449416 Msa0563140:CDS
CAAGACTAGTGGTGTTAATT+GGG 0.421578 4_1:+63448948 Msa0563140:CDS
CTTCAACACAGTGATTTGAA+TGG 0.421897 4_1:+63446909 Msa0563140:intron
GTTGAGAAGAGATTCTTTGT+TGG 0.423804 4_1:+63447290 Msa0563140:CDS
TTTGCAGCTGCTAAATCAAT+AGG 0.426019 4_1:-63446991 None:intergenic
TTGGATGAAGGTGGTGGTGG+TGG 0.428570 4_1:+63447438 Msa0563140:CDS
ATCAATGTCAAGAACAATGT+TGG 0.432252 4_1:+63448514 Msa0563140:CDS
TCAAGAGGGAGATAATGAAT+AGG 0.434364 4_1:+63447466 Msa0563140:CDS
AAAAGTGTCTCCATTGTGAT+TGG 0.439400 4_1:-63448377 None:intergenic
TGCTCTAATGGACCAATAGA+TGG 0.441410 4_1:+63449321 Msa0563140:CDS
TAGTAGCCAAAACAAATTGC+TGG 0.441988 4_1:-63446667 None:intergenic
TACCCAACAGTTGAACTATA+AGG 0.443698 4_1:+63449350 Msa0563140:CDS
AATGTTACTACGTGCATGTA+TGG 0.444537 4_1:+63449503 Msa0563140:exon
GATATTCTAAATGAAGTTCC+GGG 0.452704 4_1:-63448805 None:intergenic
GTGTATGGTTTCACAAATCC+TGG 0.452734 4_1:+63448412 Msa0563140:CDS
CAAGAGGGAGATAATGAATA+GGG 0.454391 4_1:+63447467 Msa0563140:CDS
GAATTGGATGAAGGTGGTGG+TGG 0.455900 4_1:+63447435 Msa0563140:CDS
CGAAAAGGTTGTGAACATAA+AGG 0.467371 4_1:+63448486 Msa0563140:CDS
AACAAAACTACAACTGTTTG+TGG 0.468281 4_1:-63446603 None:intergenic
TGAGAAGATTTGTATCATGA+TGG 0.469922 4_1:-63447044 None:intergenic
GGTATTGTTGAATTGGATGA+AGG 0.476941 4_1:+63447426 Msa0563140:CDS
TGAGTTATTACTAACCGAAA+AGG 0.479208 4_1:+63448471 Msa0563140:CDS
ACTGTCTTGCATTCAGCAGC+TGG 0.480625 4_1:+63447594 Msa0563140:CDS
TTGTCTTATAGAGATGTTCA+AGG 0.483573 4_1:+63447567 Msa0563140:CDS
TGGTGGATTGAACAAATTCA+TGG 0.485050 4_1:+63449531 Msa0563140:three_prime_UTR
CTTAACATTCGCGACGCAGA+TGG 0.490419 4_1:+63448619 Msa0563140:CDS
TCTCCTTATAGTTCAACTGT+TGG 0.494101 4_1:-63449353 None:intergenic
ATTGATTTAGCAGCTGCAAA+TGG 0.494631 4_1:+63446994 Msa0563140:CDS
AGTGCTTTGAATTGTAGCCT+TGG 0.497150 4_1:-63449677 None:intergenic
TCAATGTCAAGAACAATGTT+GGG 0.501046 4_1:+63448515 Msa0563140:CDS
TTCTTCTACGCCACTTGAGA+AGG 0.501910 4_1:-63448990 None:intergenic
CTTCTTACTTTCCTCTACGT+TGG 0.504888 4_1:+63446935 Msa0563140:CDS
TTGCATTCAGCAGCTGGAAG+AGG 0.512797 4_1:+63447600 Msa0563140:CDS
AGCTGGAAGAGGCCAGGTTG+AGG 0.513559 4_1:+63447611 Msa0563140:CDS
GAGTGTGAAGAAACAGCAAC+AGG 0.514596 4_1:+63447180 Msa0563140:CDS
TGGTGACTAGGAGATAGTTA+AGG 0.518448 4_1:-63446628 None:intergenic
CACAAACATGTTGATACACT+GGG 0.530524 4_1:+63449288 Msa0563140:CDS
CTCATTCGTGGTGGATATGG+TGG 0.531172 4_1:+63447213 Msa0563140:CDS
TTCAGCAGCTGGAAGAGGCC+AGG 0.531435 4_1:+63447605 Msa0563140:CDS
AAAACTCGTCATGGTATTCG+AGG 0.533755 4_1:+63448778 Msa0563140:CDS
GCACAAACATGTTGATACAC+TGG 0.536271 4_1:+63449287 Msa0563140:CDS
ATTGGTTAACTTTGTTAGTG+AGG 0.537838 4_1:-63448359 None:intergenic
CATGGTATTCGAGGTAGTCC+CGG 0.537898 4_1:+63448787 Msa0563140:CDS
CTAATGGACCAATAGATGGT+GGG 0.538891 4_1:+63449325 Msa0563140:CDS
TTGGTTAACTTTGTTAGTGA+GGG 0.539818 4_1:-63448358 None:intergenic
TACGTGCATGTATGGTATCA+TGG 0.544869 4_1:+63449511 Msa0563140:three_prime_UTR
GTGTTAATTGGGCCGCGAGA+CGG 0.548204 4_1:+63448959 Msa0563140:CDS
AGCCAAAACAAATTGCTGGC+TGG 0.555309 4_1:-63446663 None:intergenic
ATCCATGCTGCTGCTAGAGG+AGG 0.556428 4_1:+63447492 Msa0563140:CDS
CCTCTACGTTGGGAGAGCAC+AGG 0.559069 4_1:+63446946 Msa0563140:CDS
TAGGTGTTGCATACCACCAT+TGG 0.559115 4_1:-63446972 None:intergenic
TAATGGACCAATAGATGGTG+GGG 0.560343 4_1:+63449326 Msa0563140:CDS
GGAACAAACTCTCTCATTCG+TGG 0.569551 4_1:+63447201 Msa0563140:CDS
TTGTCTAGTCTGCAGAAACC+AGG 0.572724 4_1:-63448430 None:intergenic
CAACGTAGAGGAAAGTAAGA+AGG 0.582105 4_1:-63446934 None:intergenic
CTTGTAAACAGTGAAGTACA+AGG 0.582338 4_1:-63446699 None:intergenic
GCTATCCATGCTGCTGCTAG+AGG 0.583266 4_1:+63447489 Msa0563140:CDS
TCCCTCCTCTAGCAGCAGCA+TGG 0.591302 4_1:-63447494 None:intergenic
TATTGGTCCATTAGAGCAAG+AGG 0.591608 4_1:-63449316 None:intergenic
TTGCAGGCTAAATGGTGACT+AGG 0.591767 4_1:-63446640 None:intergenic
GCTCTCTTAGGAAAAGATTG+TGG 0.593730 4_1:+63447405 Msa0563140:CDS
TTCACTGCAGGTCTAATGCA+AGG 0.598503 4_1:+63449204 Msa0563140:CDS
TTGAAGATGTTGCAAAGTGT+AGG 0.602447 4_1:+63447130 Msa0563140:CDS
TTACAGAGGTTACCTTCATG+TGG 0.604215 4_1:+63448312 Msa0563140:CDS
TTACATGTGGCTTCTTACAG+AGG 0.607361 4_1:+63448298 Msa0563140:CDS
GTTGAATTGGATGAAGGTGG+TGG 0.611508 4_1:+63447432 Msa0563140:CDS
TCCATGCTGCTGCTAGAGGA+GGG 0.615437 4_1:+63447493 Msa0563140:CDS
TCTAATGGACCAATAGATGG+TGG 0.621270 4_1:+63449324 Msa0563140:CDS
ACTCATTTGAAAACTCGTCA+TGG 0.623099 4_1:+63448769 Msa0563140:CDS
TTCGTGGTGGATATGGTGGA+TGG 0.624766 4_1:+63447217 Msa0563140:CDS
TGTGAATACTTACCTCAACC+TGG 0.624850 4_1:-63447623 None:intergenic
TTAGAATCTCTACCACATGA+AGG 0.626407 4_1:-63448324 None:intergenic
ATATAGAAACTAATAAGCCA+AGG 0.626561 4_1:+63449660 Msa0563140:three_prime_UTR
ATAATGTTTGCTTAGTATCG+CGG 0.626770 4_1:-63449605 None:intergenic
ATTGTTGAATTGGATGAAGG+TGG 0.627731 4_1:+63447429 Msa0563140:CDS
GGGAGAGCACAGGAGACCAA+TGG 0.629721 4_1:+63446956 Msa0563140:CDS
AATGGACCAATAGATGGTGG+GGG 0.631397 4_1:+63449327 Msa0563140:CDS
AGCTAGGAGTAAGAATTCTG+AGG 0.643118 4_1:+63447359 Msa0563140:CDS
GTGGTGGTGGAGATTTCAAG+AGG 0.643581 4_1:+63447451 Msa0563140:CDS
ACTAGTCTTGCTGTTACATG+AGG 0.645032 4_1:-63448935 None:intergenic
TCATGTAACAGCAAGACTAG+TGG 0.650511 4_1:+63448937 Msa0563140:CDS
GGTTAATGAACCTTCTCAAG+TGG 0.653219 4_1:+63448980 Msa0563140:CDS
TCGTCGACTAGAAACTGTGT+GGG 0.654713 4_1:+63447092 Msa0563140:CDS
CCTGTGCTCTCCCAACGTAG+AGG 0.659563 4_1:-63446946 None:intergenic
ACAAAGTTAACCAATCACAA+TGG 0.661701 4_1:+63448367 Msa0563140:CDS
TGGTGGTGGAGATTTCAAGA+GGG 0.666190 4_1:+63447452 Msa0563140:CDS
AGAGCACAGGAGACCAATGG+TGG 0.668331 4_1:+63446959 Msa0563140:CDS
ACAAACTCTCTCATTCGTGG+TGG 0.676010 4_1:+63447204 Msa0563140:CDS
TTCGTCGACTAGAAACTGTG+TGG 0.676029 4_1:+63447091 Msa0563140:CDS
GTAAACTCTACTGATGCACA+AGG 0.676230 4_1:+63448265 Msa0563140:CDS
ATTGGTCCATTAGAGCAAGA+GGG 0.695277 4_1:-63449315 None:intergenic
AAGGTTCATTAACCGTCTCG+CGG 0.699125 4_1:-63448971 None:intergenic
AGGTAATACAGCATTACATG+TGG 0.700354 4_1:+63448285 Msa0563140:CDS
GTGCATGTATGGTATCATGG+TGG 0.771950 4_1:+63449514 Msa0563140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATCATTCAATTATT+AGG - chr4_1:63446838-63446857 None:intergenic 15.0%
!!! ATTTTAGAGACAAAATTATA+TGG - chr4_1:63447891-63447910 None:intergenic 15.0%
!!! TATAATTTTGTTAATTTCAG+TGG + chr4_1:63448029-63448048 Msa0563140:intron 15.0%
!! TATGAAAAAGTGAAAGTTAT+TGG - chr4_1:63446768-63446787 None:intergenic 20.0%
!! ACAAAATTATATGGTTTCTA+GGG - chr4_1:63447882-63447901 None:intergenic 20.0%
!!! ATAGGGAATTTTCATTTTTA+GGG + chr4_1:63447999-63448018 Msa0563140:intron 20.0%
!!! CTTTTTTTCAAATAATCAAG+AGG - chr4_1:63448652-63448671 None:intergenic 20.0%
!! TTAATAATTCTGTAAGTTCA+AGG + chr4_1:63449055-63449074 Msa0563140:CDS 20.0%
!! TGTTCATCAATTTCTTATTA+TGG - chr4_1:63449383-63449402 None:intergenic 20.0%
!!! ATGAACAAGTATTTTTCTTT+TGG + chr4_1:63449396-63449415 Msa0563140:CDS 20.0%
! AATAACGAGATGAAAATTCT+AGG - chr4_1:63446738-63446757 None:intergenic 25.0%
! CTTTATGTTTATTCTTCTCT+TGG - chr4_1:63446792-63446811 None:intergenic 25.0%
! GACAAAATTATATGGTTTCT+AGG - chr4_1:63447883-63447902 None:intergenic 25.0%
!! GATCGAAAATTTTCAATTTC+AGG - chr4_1:63447936-63447955 None:intergenic 25.0%
! ACCAACTTTATAATGTGATA+GGG + chr4_1:63447982-63448001 Msa0563140:intron 25.0%
!!! GATAGGGAATTTTCATTTTT+AGG + chr4_1:63447998-63448017 Msa0563140:intron 25.0%
! ACAGTTAATACTACATAATC+TGG + chr4_1:63448124-63448143 Msa0563140:intron 25.0%
! CAGTTAATACTACATAATCT+GGG + chr4_1:63448125-63448144 Msa0563140:intron 25.0%
! AATGAAATAATTAATGACGC+AGG + chr4_1:63448207-63448226 Msa0563140:intron 25.0%
! TGATATTCTAAATGAAGTTC+CGG - chr4_1:63448809-63448828 None:intergenic 25.0%
! AAGAATTTCCAATCTCATTA+AGG + chr4_1:63449091-63449110 Msa0563140:CDS 25.0%
! ACAAAAGAACACTATCTATA+AGG + chr4_1:63449148-63449167 Msa0563140:CDS 25.0%
!!! GTGAAATATTTTTTTGCAGA+TGG - chr4_1:63449189-63449208 None:intergenic 25.0%
!! TGATTTTGTTGAAACTACAA+AGG + chr4_1:63449562-63449581 Msa0563140:three_prime_UTR 25.0%
!! GATTTTGTTGAAACTACAAA+GGG + chr4_1:63449563-63449582 Msa0563140:three_prime_UTR 25.0%
! ATATAGAAACTAATAAGCCA+AGG + chr4_1:63449660-63449679 Msa0563140:three_prime_UTR 25.0%
AACAAAACTACAACTGTTTG+TGG - chr4_1:63446606-63446625 None:intergenic 30.0%
GTTGAAGAAACAAAGTAAAG+TGG - chr4_1:63446896-63446915 None:intergenic 30.0%
TGAGAAGATTTGTATCATGA+TGG - chr4_1:63447047-63447066 None:intergenic 30.0%
!!! AGAGATTCTTTGTTGGTTTT+TGG + chr4_1:63447297-63447316 Msa0563140:CDS 30.0%
! ATTCTTGATTTTGCTCTCTT+AGG + chr4_1:63447393-63447412 Msa0563140:CDS 30.0%
AGATTGTGGTATTGTTGAAT+TGG + chr4_1:63447419-63447438 Msa0563140:CDS 30.0%
TTGTCTTATAGAGATGTTCA+AGG + chr4_1:63447567-63447586 Msa0563140:CDS 30.0%
ACTCAGATTAAAAACGTATC+CGG - chr4_1:63447829-63447848 None:intergenic 30.0%
!! GTCTCTAAAATTGTAGAAGT+AGG + chr4_1:63447900-63447919 Msa0563140:intron 30.0%
GACCAACTTTATAATGTGAT+AGG + chr4_1:63447981-63448000 Msa0563140:intron 30.0%
TCCCTATCACATTATAAAGT+TGG - chr4_1:63447986-63448005 None:intergenic 30.0%
!! ATTTTAGTCCCTCAATACTT+GGG - chr4_1:63448068-63448087 None:intergenic 30.0%
!!! TATTTTAGTCCCTCAATACT+TGG - chr4_1:63448069-63448088 None:intergenic 30.0%
CTACATAATCTGGGAATAAA+AGG + chr4_1:63448134-63448153 Msa0563140:intron 30.0%
TCAGTAGAGTTTACAATATC+AGG - chr4_1:63448259-63448278 None:intergenic 30.0%
TTGGTTAACTTTGTTAGTGA+GGG - chr4_1:63448361-63448380 None:intergenic 30.0%
ATTGGTTAACTTTGTTAGTG+AGG - chr4_1:63448362-63448381 None:intergenic 30.0%
ACAAAGTTAACCAATCACAA+TGG + chr4_1:63448367-63448386 Msa0563140:CDS 30.0%
TGAGTTATTACTAACCGAAA+AGG + chr4_1:63448471-63448490 Msa0563140:CDS 30.0%
! CTTTATGTTCACAACCTTTT+CGG - chr4_1:63448488-63448507 None:intergenic 30.0%
ATCAATGTCAAGAACAATGT+TGG + chr4_1:63448514-63448533 Msa0563140:CDS 30.0%
TCAATGTCAAGAACAATGTT+GGG + chr4_1:63448515-63448534 Msa0563140:CDS 30.0%
AATTCAGAAGATCTTGATCT+TGG - chr4_1:63448676-63448695 None:intergenic 30.0%
GATATTCTAAATGAAGTTCC+GGG - chr4_1:63448808-63448827 None:intergenic 30.0%
ATCATCGTCTTCAAATTCTA+AGG - chr4_1:63449031-63449050 None:intergenic 30.0%
TATCTTTGCCTTAATGAGAT+TGG - chr4_1:63449102-63449121 None:intergenic 30.0%
!!! GATAGTGTTCTTTTGTTGTT+CGG - chr4_1:63449144-63449163 None:intergenic 30.0%
!!! TATTTTTTTGCAGATGGAGT+TGG - chr4_1:63449183-63449202 None:intergenic 30.0%
GCAAAAAAATATTTCACTGC+AGG + chr4_1:63449192-63449211 Msa0563140:CDS 30.0%
TCTAATGCAAGGTGTAATTA+AGG + chr4_1:63449215-63449234 Msa0563140:CDS 30.0%
AAGGTAAAGACACAAAAAGA+AGG + chr4_1:63449234-63449253 Msa0563140:CDS 30.0%
AGGTAAAGACACAAAAAGAA+GGG + chr4_1:63449235-63449254 Msa0563140:CDS 30.0%
!!! TATTTTTCTTTTGGAGCACA+AGG + chr4_1:63449405-63449424 Msa0563140:CDS 30.0%
!!! ATTTTTCTTTTGGAGCACAA+GGG + chr4_1:63449406-63449425 Msa0563140:CDS 30.0%
ATAATGTTTGCTTAGTATCG+CGG - chr4_1:63449608-63449627 None:intergenic 30.0%
TAGTAGCCAAAACAAATTGC+TGG - chr4_1:63446670-63446689 None:intergenic 35.0%
CTTGTAAACAGTGAAGTACA+AGG - chr4_1:63446702-63446721 None:intergenic 35.0%
CTTGTACTTCACTGTTTACA+AGG + chr4_1:63446700-63446719 Msa0563140:five_prime_UTR 35.0%
! ACGAGATGAAAATTCTAGGA+AGG - chr4_1:63446734-63446753 None:intergenic 35.0%
CTTCAACACAGTGATTTGAA+TGG + chr4_1:63446909-63446928 Msa0563140:intron 35.0%
TTCTTACTTTCCTCTACGTT+GGG + chr4_1:63446936-63446955 Msa0563140:CDS 35.0%
TTTGCAGCTGCTAAATCAAT+AGG - chr4_1:63446994-63447013 None:intergenic 35.0%
! ATTGATTTAGCAGCTGCAAA+TGG + chr4_1:63446994-63447013 Msa0563140:CDS 35.0%
TTGAAGATGTTGCAAAGTGT+AGG + chr4_1:63447130-63447149 Msa0563140:CDS 35.0%
GTTGAGAAGAGATTCTTTGT+TGG + chr4_1:63447290-63447309 Msa0563140:CDS 35.0%
!!! TCTTTGTTGGTTTTTGGTGA+AGG + chr4_1:63447303-63447322 Msa0563140:CDS 35.0%
! ATATGTTTTATGCTGCAGCT+AGG + chr4_1:63447343-63447362 Msa0563140:CDS 35.0%
GGTATTGTTGAATTGGATGA+AGG + chr4_1:63447426-63447445 Msa0563140:CDS 35.0%
ATTGTTGAATTGGATGAAGG+TGG + chr4_1:63447429-63447448 Msa0563140:CDS 35.0%
TCAAGAGGGAGATAATGAAT+AGG + chr4_1:63447466-63447485 Msa0563140:CDS 35.0%
CAAGAGGGAGATAATGAATA+GGG + chr4_1:63447467-63447486 Msa0563140:CDS 35.0%
CTATGTCACATTCTAAACAC+CGG + chr4_1:63447807-63447826 Msa0563140:intron 35.0%
AATACTTGGGTAGAGCAATT+CGG - chr4_1:63448055-63448074 None:intergenic 35.0%
CATAATCTGGGAATAAAAGG+AGG + chr4_1:63448137-63448156 Msa0563140:intron 35.0%
GAAATAATTAATGACGCAGG+TGG + chr4_1:63448210-63448229 Msa0563140:intron 35.0%
AGGTAATACAGCATTACATG+TGG + chr4_1:63448285-63448304 Msa0563140:CDS 35.0%
TTAGAATCTCTACCACATGA+AGG - chr4_1:63448327-63448346 None:intergenic 35.0%
!! AAAAGTGTCTCCATTGTGAT+TGG - chr4_1:63448380-63448399 None:intergenic 35.0%
! TGGAGACACTTTTCTTCATA+TGG + chr4_1:63448387-63448406 Msa0563140:CDS 35.0%
TTTCTTCATATGGCAGTGTA+TGG + chr4_1:63448397-63448416 Msa0563140:CDS 35.0%
CGAAAAGGTTGTGAACATAA+AGG + chr4_1:63448486-63448505 Msa0563140:CDS 35.0%
ACTCATTTGAAAACTCGTCA+TGG + chr4_1:63448769-63448788 Msa0563140:CDS 35.0%
! CAAGACTAGTGGTGTTAATT+GGG + chr4_1:63448948-63448967 Msa0563140:CDS 35.0%
CACAAACATGTTGATACACT+GGG + chr4_1:63449288-63449307 Msa0563140:CDS 35.0%
TACCCAACAGTTGAACTATA+AGG + chr4_1:63449350-63449369 Msa0563140:CDS 35.0%
CTCCTTATAGTTCAACTGTT+GGG - chr4_1:63449355-63449374 None:intergenic 35.0%
TCTCCTTATAGTTCAACTGT+TGG - chr4_1:63449356-63449375 None:intergenic 35.0%
AATGTTACTACGTGCATGTA+TGG + chr4_1:63449503-63449522 Msa0563140:exon 35.0%
!! TGGTGGATTGAACAAATTCA+TGG + chr4_1:63449531-63449550 Msa0563140:three_prime_UTR 35.0%
TGGTGACTAGGAGATAGTTA+AGG - chr4_1:63446631-63446650 None:intergenic 40.0%
!! AACCAGCCAGCAATTTGTTT+TGG + chr4_1:63446661-63446680 Msa0563140:five_prime_UTR 40.0%
CAACGTAGAGGAAAGTAAGA+AGG - chr4_1:63446937-63446956 None:intergenic 40.0%
CTTCTTACTTTCCTCTACGT+TGG + chr4_1:63446935-63446954 Msa0563140:CDS 40.0%
!!! GTTTTTGGTGAAGGAGAGTA+TGG + chr4_1:63447312-63447331 Msa0563140:CDS 40.0%
AGCTAGGAGTAAGAATTCTG+AGG + chr4_1:63447359-63447378 Msa0563140:CDS 40.0%
GCTCTCTTAGGAAAAGATTG+TGG + chr4_1:63447405-63447424 Msa0563140:CDS 40.0%
TGTGAATACTTACCTCAACC+TGG - chr4_1:63447626-63447645 None:intergenic 40.0%
GGTTGAGGTAAGTATTCACA+TGG + chr4_1:63447626-63447645 Msa0563140:intron 40.0%
! TTTCTAGGGATCATACAAGC+AGG - chr4_1:63447868-63447887 None:intergenic 40.0%
! ATTGCTCTACCCAAGTATTG+AGG + chr4_1:63448056-63448075 Msa0563140:intron 40.0%
!! TTGCTCTACCCAAGTATTGA+GGG + chr4_1:63448057-63448076 Msa0563140:intron 40.0%
GTAAACTCTACTGATGCACA+AGG + chr4_1:63448265-63448284 Msa0563140:CDS 40.0%
TTACATGTGGCTTCTTACAG+AGG + chr4_1:63448298-63448317 Msa0563140:CDS 40.0%
TTACAGAGGTTACCTTCATG+TGG + chr4_1:63448312-63448331 Msa0563140:CDS 40.0%
GTGTATGGTTTCACAAATCC+TGG + chr4_1:63448412-63448431 Msa0563140:CDS 40.0%
AAAACTCGTCATGGTATTCG+AGG + chr4_1:63448778-63448797 Msa0563140:CDS 40.0%
!! ACTAGTCTTGCTGTTACATG+AGG - chr4_1:63448938-63448957 None:intergenic 40.0%
TCATGTAACAGCAAGACTAG+TGG + chr4_1:63448937-63448956 Msa0563140:CDS 40.0%
! GCAAGACTAGTGGTGTTAAT+TGG + chr4_1:63448947-63448966 Msa0563140:CDS 40.0%
GGTTAATGAACCTTCTCAAG+TGG + chr4_1:63448980-63448999 Msa0563140:CDS 40.0%
GCACAAACATGTTGATACAC+TGG + chr4_1:63449287-63449306 Msa0563140:CDS 40.0%
ATTGGTCCATTAGAGCAAGA+GGG - chr4_1:63449318-63449337 None:intergenic 40.0%
TATTGGTCCATTAGAGCAAG+AGG - chr4_1:63449319-63449338 None:intergenic 40.0%
! TGCTCTAATGGACCAATAGA+TGG + chr4_1:63449321-63449340 Msa0563140:CDS 40.0%
! TCTAATGGACCAATAGATGG+TGG + chr4_1:63449324-63449343 Msa0563140:CDS 40.0%
! CTAATGGACCAATAGATGGT+GGG + chr4_1:63449325-63449344 Msa0563140:CDS 40.0%
! TAATGGACCAATAGATGGTG+GGG + chr4_1:63449326-63449345 Msa0563140:CDS 40.0%
TACGTGCATGTATGGTATCA+TGG + chr4_1:63449511-63449530 Msa0563140:three_prime_UTR 40.0%
! AGTGCTTTGAATTGTAGCCT+TGG - chr4_1:63449680-63449699 None:intergenic 40.0%
TTGCAGGCTAAATGGTGACT+AGG - chr4_1:63446643-63446662 None:intergenic 45.0%
AGCCAAAACAAATTGCTGGC+TGG - chr4_1:63446666-63446685 None:intergenic 45.0%
! TAGGTGTTGCATACCACCAT+TGG - chr4_1:63446975-63446994 None:intergenic 45.0%
! TTCGTCGACTAGAAACTGTG+TGG + chr4_1:63447091-63447110 Msa0563140:CDS 45.0%
! TCGTCGACTAGAAACTGTGT+GGG + chr4_1:63447092-63447111 Msa0563140:CDS 45.0%
GAGTGTGAAGAAACAGCAAC+AGG + chr4_1:63447180-63447199 Msa0563140:CDS 45.0%
GGAACAAACTCTCTCATTCG+TGG + chr4_1:63447201-63447220 Msa0563140:CDS 45.0%
ACAAACTCTCTCATTCGTGG+TGG + chr4_1:63447204-63447223 Msa0563140:CDS 45.0%
!! TCTCTCATTCGTGGTGGATA+TGG + chr4_1:63447210-63447229 Msa0563140:CDS 45.0%
! TTGTATACTGCTGCTTCTGC+TGG + chr4_1:63447243-63447262 Msa0563140:CDS 45.0%
GTTGAATTGGATGAAGGTGG+TGG + chr4_1:63447432-63447451 Msa0563140:CDS 45.0%
!! TGGTGGTGGAGATTTCAAGA+GGG + chr4_1:63447452-63447471 Msa0563140:CDS 45.0%
!! CTTGCTATGAAGTGCTGACA+TGG + chr4_1:63447743-63447762 Msa0563140:intron 45.0%
TTGTCTAGTCTGCAGAAACC+AGG - chr4_1:63448433-63448452 None:intergenic 45.0%
AAGGTTCATTAACCGTCTCG+CGG - chr4_1:63448974-63448993 None:intergenic 45.0%
TTCTTCTACGCCACTTGAGA+AGG - chr4_1:63448993-63449012 None:intergenic 45.0%
TTCACTGCAGGTCTAATGCA+AGG + chr4_1:63449204-63449223 Msa0563140:CDS 45.0%
! AATGGACCAATAGATGGTGG+GGG + chr4_1:63449327-63449346 Msa0563140:CDS 45.0%
GTGCATGTATGGTATCATGG+TGG + chr4_1:63449514-63449533 Msa0563140:three_prime_UTR 45.0%
! ACAAATTGCTGGCTGGTTGC+AGG - chr4_1:63446659-63446678 None:intergenic 50.0%
!! CTCATTCGTGGTGGATATGG+TGG + chr4_1:63447213-63447232 Msa0563140:CDS 50.0%
!! TTCGTGGTGGATATGGTGGA+TGG + chr4_1:63447217-63447236 Msa0563140:CDS 50.0%
! TGCTGCTTCTGCTGGTGATT+TGG + chr4_1:63447251-63447270 Msa0563140:CDS 50.0%
! GAATTGGATGAAGGTGGTGG+TGG + chr4_1:63447435-63447454 Msa0563140:CDS 50.0%
!! GTGGTGGTGGAGATTTCAAG+AGG + chr4_1:63447451-63447470 Msa0563140:CDS 50.0%
TGCTGCTAGAGGAGGGAATT+GGG + chr4_1:63447500-63447519 Msa0563140:CDS 50.0%
ACTGTCTTGCATTCAGCAGC+TGG + chr4_1:63447594-63447613 Msa0563140:CDS 50.0%
TTGCATTCAGCAGCTGGAAG+AGG + chr4_1:63447600-63447619 Msa0563140:CDS 50.0%
GTCAGCACTTCATAGCAAGC+AGG - chr4_1:63447742-63447761 None:intergenic 50.0%
CTTAACATTCGCGACGCAGA+TGG + chr4_1:63448619-63448638 Msa0563140:CDS 50.0%
CATGGTATTCGAGGTAGTCC+CGG + chr4_1:63448787-63448806 Msa0563140:CDS 50.0%
!!! TTCTTTTGGAGCACAAGGGC+AGG + chr4_1:63449410-63449429 Msa0563140:CDS 50.0%
! CTGGCTGGTTGCAGGCTAAA+TGG - chr4_1:63446651-63446670 None:intergenic 55.0%
AGAGCACAGGAGACCAATGG+TGG + chr4_1:63446959-63446978 Msa0563140:CDS 55.0%
!! TTGGATGAAGGTGGTGGTGG+TGG + chr4_1:63447438-63447457 Msa0563140:CDS 55.0%
GCTATCCATGCTGCTGCTAG+AGG + chr4_1:63447489-63447508 Msa0563140:CDS 55.0%
ATCCATGCTGCTGCTAGAGG+AGG + chr4_1:63447492-63447511 Msa0563140:CDS 55.0%
TCCATGCTGCTGCTAGAGGA+GGG + chr4_1:63447493-63447512 Msa0563140:CDS 55.0%
CTGCTGCTAGAGGAGGGAAT+TGG + chr4_1:63447499-63447518 Msa0563140:CDS 55.0%
GTGTTAATTGGGCCGCGAGA+CGG + chr4_1:63448959-63448978 Msa0563140:CDS 55.0%
GGACTGCCCTCTTGCTCTAA+TGG + chr4_1:63449309-63449328 Msa0563140:CDS 55.0%
TGGGTACCCCCACCATCTAT+TGG - chr4_1:63449336-63449355 None:intergenic 55.0%
CCTGTGCTCTCCCAACGTAG+AGG - chr4_1:63446949-63446968 None:intergenic 60.0%
! CCTCTACGTTGGGAGAGCAC+AGG + chr4_1:63446946-63446965 Msa0563140:CDS 60.0%
! GGGAGAGCACAGGAGACCAA+TGG + chr4_1:63446956-63446975 Msa0563140:CDS 60.0%
TCCCTCCTCTAGCAGCAGCA+TGG - chr4_1:63447497-63447516 None:intergenic 60.0%
TTCAGCAGCTGGAAGAGGCC+AGG + chr4_1:63447605-63447624 Msa0563140:CDS 60.0%
AGCTGGAAGAGGCCAGGTTG+AGG + chr4_1:63447611-63447630 Msa0563140:CDS 60.0%
TGGAGCACAAGGGCAGGCTT+TGG + chr4_1:63449416-63449435 Msa0563140:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63446600 63449739 63446600 ID=Msa0563140;Name=Msa0563140
chr4_1 mRNA 63446600 63449739 63446600 ID=Msa0563140-mRNA-1;Parent=Msa0563140;Name=Msa0563140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|0.5|0.33|3|236|659
chr4_1 exon 63446600 63446721 63446600 ID=Msa0563140-mRNA-1:exon:20104;Parent=Msa0563140-mRNA-1
chr4_1 exon 63446920 63447632 63446920 ID=Msa0563140-mRNA-1:exon:20105;Parent=Msa0563140-mRNA-1
chr4_1 exon 63448229 63449739 63448229 ID=Msa0563140-mRNA-1:exon:20106;Parent=Msa0563140-mRNA-1
chr4_1 five_prime_UTR 63446600 63446721 63446600 ID=Msa0563140-mRNA-1:five_prime_utr;Parent=Msa0563140-mRNA-1
chr4_1 five_prime_UTR 63446920 63446927 63446920 ID=Msa0563140-mRNA-1:five_prime_utr;Parent=Msa0563140-mRNA-1
chr4_1 CDS 63446928 63447632 63446928 ID=Msa0563140-mRNA-1:cds;Parent=Msa0563140-mRNA-1
chr4_1 CDS 63448229 63449503 63448229 ID=Msa0563140-mRNA-1:cds;Parent=Msa0563140-mRNA-1
chr4_1 three_prime_UTR 63449504 63449739 63449504 ID=Msa0563140-mRNA-1:three_prime_utr;Parent=Msa0563140-mRNA-1
Gene Sequence

>Msa0563140

ATGGCACCTTCTTACTTTCCTCTACGTTGGGAGAGCACAGGAGACCAATGGTGGTATGCAACACCTATTGATTTAGCAGCTGCAAATGGTCTCTATGATTTAGTAGCTGAGCTTCTCCATCATGATACAAATCTTCTCATTAAGCTCACTTCTCTTTGTCGAATTCGTCGACTAGAAACTGTGTGGGATGATGAAGCTCAGTTTGAAGATGTTGCAAAGTGTAGGTCTCATGTTGCAAAGAAACTTCTGCTTGAGTGTGAAGAAACAGCAACAGGAACAAACTCTCTCATTCGTGGTGGATATGGTGGATGGCTTTTGTATACTGCTGCTTCTGCTGGTGATTTGGAGTTTGTTTATGAATTGTTGAGAAGAGATTCTTTGTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGTTTTATGCTGCAGCTAGGAGTAAGAATTCTGAGGTATTCAACATGATTCTTGATTTTGCTCTCTTAGGAAAAGATTGTGGTATTGTTGAATTGGATGAAGGTGGTGGTGGTGGAGATTTCAAGAGGGAGATAATGAATAGGGCTATCCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTTAAGAAGCAGCTTCTTTTAGTAAGTGCTTCTCAGATTTTGTCTTATAGAGATGTTCAAGGATGTACTGTCTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTTAGAAATCTAATTGCATCATCACCTGATATTGTAAACTCTACTGATGCACAAGGTAATACAGCATTACATGTGGCTTCTTACAGAGGTTACCTTCATGTGGTAGAGATTCTAATTCAAGCATCTCCCTCACTAACAAAGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAGTGTATGGTTTCACAAATCCTGGTTTCTGCAGACTAGACAAGCACACTGAGCTCATGAATGAGTTATTACTAACCGAAAAGGTTGTGAACATAAAGGACATAATCAATGTCAAGAACAATGTTGGGAGAACAGCAATTCATGTAGCTGTGATTCATGATGTCAAGCGTGATGTACTTGAATCAATGATGTCTGTTGCATCAATCGATCTTAACATTCGCGACGCAGATGGAATGACACCTCTTGATTATTTGAAAAAAAGACCAAGATCAAGATCTTCTGAATTATTAATCAAGAAATTGATTTCATCTGTAAGTTTCTATAATCGTGAAGATTATATGACAAGAAACACAATTGTGACTCATTTGAAAACTCGTCATGGTATTCGAGGTAGTCCCGGAACTTCATTTAGAATATCAGATTCTAAGATACTCTTACACACATGCAATGAGAATGATCAAGCAAGTGTAGAATCAAATTCATGCTCAATTGAAGTAGACAGTAATTATGAGTCAGCTGAAAATTCCTCATGTAACAGCAAGACTAGTGGTGTTAATTGGGCCGCGAGACGGTTAATGAACCTTCTCAAGTGGCGTAGAAGAAGAGAGACAAAAGAAACCTTAGAATTTGAAGACGATGATTCTGTTAATAATTCTGTAAGTTCAAGGAAAAATGATTTCGAAGAATTTCCAATCTCATTAAGGCAAAGATACTCAAAACAGTGCTCTCTTCCGAACAACAAAAGAACACTATCTATAAGGACTTTACTTCCAACTCCATCTGCAAAAAAATATTTCACTGCAGGTCTAATGCAAGGTGTAATTAAGGTAAAGACACAAAAAGAAGGGTCTAATTTGTCTCATTCTTCAAACAATAAGCACAAACATGTTGATACACTGGGACTGCCCTCTTGCTCTAATGGACCAATAGATGGTGGGGGTACCCAACAGTTGAACTATAAGGAGAGAAACCATAATAAGAAATTGATGAACAAGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACACTTGCTCAATGTCAAATCACAGTTCTAAGTGTTTCAGTTATTTAGTTGCATAA

Protein sequence

>Msa0563140

MAPSYFPLRWESTGDQWWYATPIDLAAANGLYDLVAELLHHDTNLLIKLTSLCRIRRLETVWDDEAQFEDVAKCRSHVAKKLLLECEETATGTNSLIRGGYGGWLLYTAASAGDLEFVYELLRRDSLLVFGEGEYGVTDMFYAAARSKNSEVFNMILDFALLGKDCGIVELDEGGGGGDFKREIMNRAIHAAARGGNWEILKKQLLLVSASQILSYRDVQGCTVLHSAAGRGQVEVVRNLIASSPDIVNSTDAQGNTALHVASYRGYLHVVEILIQASPSLTKLTNHNGDTFLHMAVYGFTNPGFCRLDKHTELMNELLLTEKVVNIKDIINVKNNVGRTAIHVAVIHDVKRDVLESMMSVASIDLNIRDADGMTPLDYLKKRPRSRSSELLIKKLISSVSFYNREDYMTRNTIVTHLKTRHGIRGSPGTSFRISDSKILLHTCNENDQASVESNSCSIEVDSNYESAENSSCNSKTSGVNWAARRLMNLLKWRRRRETKETLEFEDDDSVNNSVSSRKNDFEEFPISLRQRYSKQCSLPNNKRTLSIRTLLPTPSAKKYFTAGLMQGVIKVKTQKEGSNLSHSSNNKHKHVDTLGLPSCSNGPIDGGGTQQLNYKERNHNKKLMNKYFSFGAQGQALEDANTCSMSNHSSKCFSYLVA*