Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572070 | XP_013447106.1 | 92.248 | 129 | 4 | 1 | 1 | 129 | 1 | 123 | 5.22e-77 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572070 | sp|O03982|HIP39_ARATH | 47.977 | 173 | 46 | 3 | 1 | 129 | 1 | 173 | 1.44e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572070 | A0A072TW71 | 92.248 | 129 | 4 | 1 | 1 | 129 | 1 | 123 | 2.49e-77 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0572070 | Msa1386660 | 0.802784 | 4.760380e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572070 | MtrunA17_Chr8g0387471 | 92.248 | 129 | 4 | 1 | 1 | 129 | 1 | 123 | 4.80e-81 | 234 |
| Msa0572070 | MtrunA17_Chr8g0348361 | 52.414 | 145 | 53 | 1 | 1 | 129 | 1 | 145 | 1.11e-32 | 112 |
| Msa0572070 | MtrunA17_Chr6g0469651 | 50.000 | 136 | 62 | 2 | 1 | 133 | 1 | 133 | 1.57e-29 | 103 |
| Msa0572070 | MtrunA17_Chr1g0202541 | 44.853 | 136 | 72 | 2 | 1 | 133 | 1 | 136 | 2.10e-29 | 103 |
| Msa0572070 | MtrunA17_Chr6g0469681 | 48.507 | 134 | 53 | 3 | 1 | 129 | 1 | 123 | 4.75e-29 | 102 |
| Msa0572070 | MtrunA17_Chr6g0469571 | 47.244 | 127 | 58 | 1 | 1 | 127 | 1 | 118 | 1.37e-28 | 101 |
| Msa0572070 | MtrunA17_Chr7g0248671 | 73.239 | 71 | 19 | 0 | 1 | 71 | 1 | 71 | 2.51e-28 | 102 |
| Msa0572070 | MtrunA17_Chr6g0469551 | 46.457 | 127 | 59 | 1 | 1 | 127 | 1 | 118 | 4.06e-28 | 100 |
| Msa0572070 | MtrunA17_Chr6g0469671 | 62.857 | 70 | 26 | 0 | 1 | 70 | 1 | 70 | 6.29e-28 | 99.4 |
| Msa0572070 | MtrunA17_Chr1g0202561 | 62.857 | 70 | 26 | 0 | 1 | 70 | 1 | 70 | 2.39e-27 | 98.6 |
| Msa0572070 | MtrunA17_Chr1g0202581 | 46.617 | 133 | 70 | 1 | 1 | 133 | 1 | 132 | 9.54e-27 | 97.1 |
| Msa0572070 | MtrunA17_Chr6g0469591 | 45.669 | 127 | 60 | 1 | 1 | 127 | 1 | 118 | 1.87e-26 | 95.9 |
| Msa0572070 | MtrunA17_Chr1g0204291 | 42.553 | 141 | 64 | 3 | 1 | 133 | 1 | 132 | 1.15e-25 | 94.4 |
| Msa0572070 | MtrunA17_Chr1g0202501 | 48.462 | 130 | 62 | 3 | 1 | 129 | 1 | 126 | 4.50e-25 | 92.8 |
| Msa0572070 | MtrunA17_Chr7g0233181 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 4.93e-25 | 91.7 |
| Msa0572070 | MtrunA17_Chr7g0233251 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 1.07e-24 | 91.3 |
| Msa0572070 | MtrunA17_Chr7g0233211 | 54.430 | 79 | 34 | 1 | 1 | 79 | 1 | 77 | 3.70e-24 | 89.7 |
| Msa0572070 | MtrunA17_Chr7g0233191 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 4.59e-24 | 89.4 |
| Msa0572070 | MtrunA17_Chr6g0469541 | 48.750 | 80 | 41 | 0 | 1 | 80 | 1 | 80 | 4.75e-24 | 89.4 |
| Msa0572070 | MtrunA17_Chr7g0233201 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 6.94e-24 | 89.0 |
| Msa0572070 | MtrunA17_Chr7g0233231 | 53.333 | 75 | 35 | 0 | 1 | 75 | 1 | 75 | 3.35e-23 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572070 | AT1G01490.1 | 47.977 | 173 | 46 | 3 | 1 | 129 | 1 | 173 | 1.46e-39 | 131 |
| Msa0572070 | AT1G01490.2 | 47.977 | 173 | 46 | 3 | 1 | 129 | 1 | 173 | 1.46e-39 | 131 |
| Msa0572070 | AT1G01490.4 | 47.368 | 171 | 46 | 3 | 3 | 129 | 30 | 200 | 1.70e-38 | 129 |
| Msa0572070 | AT5G52740.1 | 52.778 | 72 | 32 | 1 | 1 | 72 | 1 | 70 | 3.99e-18 | 74.7 |
| Msa0572070 | AT1G01490.3 | 38.571 | 140 | 42 | 3 | 34 | 129 | 1 | 140 | 4.23e-17 | 72.8 |
| Msa0572070 | AT5G52760.1 | 38.017 | 121 | 57 | 4 | 2 | 119 | 4 | 109 | 5.32e-16 | 69.7 |
| Msa0572070 | AT1G63950.2 | 44.776 | 67 | 37 | 0 | 1 | 67 | 1 | 67 | 2.43e-13 | 62.4 |
| Msa0572070 | AT1G63960.2 | 40.000 | 70 | 41 | 1 | 1 | 69 | 11 | 80 | 1.86e-12 | 60.8 |
| Msa0572070 | AT1G63950.1 | 42.188 | 64 | 37 | 0 | 4 | 67 | 1 | 64 | 1.96e-11 | 57.4 |
| Msa0572070 | AT5G52750.1 | 43.077 | 65 | 37 | 0 | 3 | 67 | 5 | 69 | 2.45e-11 | 57.8 |
Find 33 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCGGTTTCTAGCCTTTC+AGG | 0.141123 | 4_1:+74853540 | Msa0572070:CDS |
| GGCACTTGTTTGACTTGTTT+TGG | 0.244120 | 4_1:+74852732 | Msa0572070:five_prime_UTR |
| AGCTCAGCAATTTGTTCATT+TGG | 0.261412 | 4_1:-74854433 | None:intergenic |
| CAACAGATAACACAAGCATT+TGG | 0.350285 | 4_1:-74854526 | None:intergenic |
| TTGACTGATCTTCAAAACTT+TGG | 0.364724 | 4_1:+74852919 | Msa0572070:five_prime_UTR |
| AAGTGTTGATATTTAATTGT+AGG | 0.377594 | 4_1:-74852898 | None:intergenic |
| AATTTGCTCACAACATCAAC+AGG | 0.390553 | 4_1:-74854292 | None:intergenic |
| AAGGCTAGAAACCGATTTCA+TGG | 0.398452 | 4_1:-74853535 | None:intergenic |
| AACAGATAACACAAGCATTT+GGG | 0.403989 | 4_1:-74854525 | None:intergenic |
| GAGGATTGAATGTTTAGAAG+TGG | 0.450799 | 4_1:-74852838 | None:intergenic |
| ATGGAATGCAACTTCGTGTT+GGG | 0.465202 | 4_1:-74852798 | None:intergenic |
| TGAATGTTTAGAAGTGGAGA+AGG | 0.466461 | 4_1:-74852832 | None:intergenic |
| CTTCTTGTCCTTCATGTCCA+TGG | 0.471694 | 4_1:-74854245 | None:intergenic |
| GGAGAAGGAGCAAAGAAAGA+TGG | 0.474457 | 4_1:-74852817 | None:intergenic |
| TTTGTTCTTGTAGAAAATAG+TGG | 0.476254 | 4_1:+74853473 | Msa0572070:intron |
| TGATAGTATTGAGTCATGTA+TGG | 0.483480 | 4_1:-74854481 | None:intergenic |
| GTAGAAAATAGTGGTGAAGT+TGG | 0.484582 | 4_1:+74853482 | Msa0572070:intron |
| AAAGCAGAAAGCCATGAAAT+CGG | 0.493020 | 4_1:+74853524 | Msa0572070:CDS |
| GTTGATATTTAATTGTAGGA+AGG | 0.500952 | 4_1:-74852894 | None:intergenic |
| AAATTAAGAGAGGGAGTAGG+AGG | 0.510762 | 4_1:-74852857 | None:intergenic |
| GATATTTAATTGTAGGAAGG+AGG | 0.513201 | 4_1:-74852891 | None:intergenic |
| TTCTATCGCCATGGACATGA+AGG | 0.528603 | 4_1:+74854237 | Msa0572070:CDS |
| GGTTGGGCCGGCAAAAGAGC+CGG | 0.542911 | 4_1:+74854345 | Msa0572070:CDS |
| GGACAAGAAGCTGACAGTGG+TGG | 0.567439 | 4_1:+74854258 | Msa0572070:CDS |
| GATGGAATGCAACTTCGTGT+TGG | 0.579616 | 4_1:-74852799 | None:intergenic |
| GACAAGAAGCTGACAGTGGT+GGG | 0.581359 | 4_1:+74854259 | Msa0572070:CDS |
| TTGGACTCAAGTGAAAATGA+AGG | 0.600404 | 4_1:+74852938 | Msa0572070:exon |
| AGGCATTGATTCTATCGCCA+TGG | 0.631632 | 4_1:+74854228 | Msa0572070:intron |
| CTATCATGTTCAGAGTGTAG+AGG | 0.659008 | 4_1:+74854498 | Msa0572070:CDS |
| GTGACCAGTGAGTACCTGAA+AGG | 0.659865 | 4_1:-74853554 | None:intergenic |
| GAGCTTATTAAGCAATACAG+AGG | 0.663132 | 4_1:+74854451 | Msa0572070:CDS |
| GAAGGACAAGAAGCTGACAG+TGG | 0.724331 | 4_1:+74854255 | Msa0572070:CDS |
| ATTTGCTCACAACATCAACA+GGG | 0.737533 | 4_1:-74854291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTTATTAATTATT+TGG | + | chr4_1:74853852-74853871 | Msa0572070:intron | 0.0% |
| !! | ATTAATTAAACTATTATAGT+TGG | + | chr4_1:74853230-74853249 | Msa0572070:intron | 10.0% |
| !! | ATTTACTATTACTAAATTAA+TGG | - | chr4_1:74853605-74853624 | None:intergenic | 10.0% |
| !! | ATTTCATATCAATTCAAATA+AGG | + | chr4_1:74853075-74853094 | Msa0572070:intron | 15.0% |
| !! | TTTAATTAATGAAACAAGTA+AGG | - | chr4_1:74853220-74853239 | None:intergenic | 15.0% |
| !! | TAATAATGATTTCAATTCTT+AGG | + | chr4_1:74853443-74853462 | Msa0572070:intron | 15.0% |
| !! | TGAACCTTTATTAATTAAAA+TGG | + | chr4_1:74853818-74853837 | Msa0572070:intron | 15.0% |
| !! | ATTAATAAATAAATATCTGC+TGG | - | chr4_1:74853848-74853867 | None:intergenic | 15.0% |
| !!! | ATGTTTTGGTTTTTTATATT+TGG | - | chr4_1:74854152-74854171 | None:intergenic | 15.0% |
| !!! | ATTCAAATCATTAACTATTT+TGG | - | chr4_1:74854206-74854225 | None:intergenic | 15.0% |
| !! | AAAAAATTAAACAATAAGCT+TGG | + | chr4_1:74854703-74854722 | Msa0572070:intron | 15.0% |
| !!! | ATGATAACACAAATTTTAAA+TGG | - | chr4_1:74855028-74855047 | None:intergenic | 15.0% |
| !! | TGAATAGAAAAATTAAGAGA+GGG | - | chr4_1:74852869-74852888 | None:intergenic | 20.0% |
| !!! | AAGTGTTGATATTTAATTGT+AGG | - | chr4_1:74852901-74852920 | None:intergenic | 20.0% |
| !! | GAAATAAACAAGAAATTGAA+AGG | - | chr4_1:74853060-74853079 | None:intergenic | 20.0% |
| !! | AGAAATATTGAATACTTGAA+TGG | - | chr4_1:74853105-74853124 | None:intergenic | 20.0% |
| !! | ATTACTAAATTAATGGAGTA+AGG | - | chr4_1:74853598-74853617 | None:intergenic | 20.0% |
| !! | CCTTTATTAATTAAAATGGA+CGG | + | chr4_1:74853822-74853841 | Msa0572070:intron | 20.0% |
| ! | GTGAATAGAAAAATTAAGAG+AGG | - | chr4_1:74852870-74852889 | None:intergenic | 25.0% |
| ! | GTTGATATTTAATTGTAGGA+AGG | - | chr4_1:74852897-74852916 | None:intergenic | 25.0% |
| ! | GATTTCTTGCTCTAATTTAA+AGG | + | chr4_1:74852964-74852983 | Msa0572070:intron | 25.0% |
| ! | TCAAAGAAAAAAACAGAACA+TGG | - | chr4_1:74853016-74853035 | None:intergenic | 25.0% |
| ! | AGAAATTGAAAGGAAAAAAG+AGG | - | chr4_1:74853050-74853069 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACTGAGTAAGG+TGG | - | chr4_1:74853155-74853174 | None:intergenic | 25.0% |
| ! | CTGAAAAAAAAAACTGAGTA+AGG | - | chr4_1:74853158-74853177 | None:intergenic | 25.0% |
| ! | AATGAAACAAGTAAGGAAAT+GGG | - | chr4_1:74853213-74853232 | None:intergenic | 25.0% |
| ! | TAATGAAACAAGTAAGGAAA+TGG | - | chr4_1:74853214-74853233 | None:intergenic | 25.0% |
| ! | ATGTAATGAAAAAACAAAGC+AGG | - | chr4_1:74853398-74853417 | None:intergenic | 25.0% |
| ! | TTTGTTCTTGTAGAAAATAG+TGG | + | chr4_1:74853473-74853492 | Msa0572070:intron | 25.0% |
| ! | TTAGTGGAATTTGTACTAAA+AGG | - | chr4_1:74853636-74853655 | None:intergenic | 25.0% |
| !!! | TCGAGTTTTAAAATGTTTAG+TGG | - | chr4_1:74853652-74853671 | None:intergenic | 25.0% |
| ! | TAGGAAAATGAAATCATTGT+TGG | - | chr4_1:74853752-74853771 | None:intergenic | 25.0% |
| ! | TTCCTAAGTAAGTATACAAT+TGG | + | chr4_1:74853766-74853785 | Msa0572070:intron | 25.0% |
| !!! | CCGTCCATTTTAATTAATAA+AGG | - | chr4_1:74853825-74853844 | None:intergenic | 25.0% |
| ! | CACATAAATGTACACTAAAT+GGG | - | chr4_1:74854108-74854127 | None:intergenic | 25.0% |
| ! | ACACATAAATGTACACTAAA+TGG | - | chr4_1:74854109-74854128 | None:intergenic | 25.0% |
| ! | ATAGTTAATGATTTGAATGC+AGG | + | chr4_1:74854208-74854227 | Msa0572070:intron | 25.0% |
| ! | AAAGCATAGAATAGAAGATT+TGG | + | chr4_1:74854578-74854597 | Msa0572070:intron | 25.0% |
| ! | TAGAAGATTTGGATTTAATG+TGG | + | chr4_1:74854589-74854608 | Msa0572070:intron | 25.0% |
| ! | ATTCATGCATTCATGTTATT+AGG | + | chr4_1:74854618-74854637 | Msa0572070:intron | 25.0% |
| ! | AATGTGTAGATTGTTAATTG+CGG | + | chr4_1:74854779-74854798 | Msa0572070:intron | 25.0% |
| ! | ATCTAAATCCATAGTTGAAT+TGG | + | chr4_1:74854805-74854824 | Msa0572070:intron | 25.0% |
| ! | TTGCGTGTAAATTATGAATT+AGG | + | chr4_1:74854874-74854893 | Msa0572070:intron | 25.0% |
| ! | GGATTATGGTGTATTAAAAT+AGG | + | chr4_1:74854936-74854955 | Msa0572070:intron | 25.0% |
| ! | TGTATTAAAATAGGCTATGA+AGG | + | chr4_1:74854945-74854964 | Msa0572070:intron | 25.0% |
| ! | TAAGATTATTGCAAATGCTA+CGG | - | chr4_1:74855221-74855240 | None:intergenic | 25.0% |
| ! | AGCATTTGCAATAATCTTAT+TGG | + | chr4_1:74855222-74855241 | Msa0572070:intron | 25.0% |
| ! | GCATTTGCAATAATCTTATT+GGG | + | chr4_1:74855223-74855242 | Msa0572070:intron | 25.0% |
| GATATTTAATTGTAGGAAGG+AGG | - | chr4_1:74852894-74852913 | None:intergenic | 30.0% | |
| TTGACTGATCTTCAAAACTT+TGG | + | chr4_1:74852919-74852938 | Msa0572070:five_prime_UTR | 30.0% | |
| ATGAAACAAGTAAGGAAATG+GGG | - | chr4_1:74853212-74853231 | None:intergenic | 30.0% | |
| GCTAAACACGATTTAATAGA+AGG | + | chr4_1:74853318-74853337 | Msa0572070:intron | 30.0% | |
| GTCCAATTGTATACTTACTT+AGG | - | chr4_1:74853771-74853790 | None:intergenic | 30.0% | |
| ATTCAAATAACATCACTCCA+TGG | - | chr4_1:74853896-74853915 | None:intergenic | 30.0% | |
| AAACCAAAACATGTCTCAAT+CGG | + | chr4_1:74854160-74854179 | Msa0572070:intron | 30.0% | |
| TGAGCAAATTGAGAAAAACT+TGG | + | chr4_1:74854305-74854324 | Msa0572070:CDS | 30.0% | |
| ! | TGATAGTATTGAGTCATGTA+TGG | - | chr4_1:74854484-74854503 | None:intergenic | 30.0% |
| AACAGATAACACAAGCATTT+GGG | - | chr4_1:74854528-74854547 | None:intergenic | 30.0% | |
| ATTCTATGCTTTCTCAATCA+AGG | - | chr4_1:74854570-74854589 | None:intergenic | 30.0% | |
| TTGGACATGAACAAAAAGTA+AGG | + | chr4_1:74854846-74854865 | Msa0572070:intron | 30.0% | |
| TTTAATACACCATAATCCTC+AGG | - | chr4_1:74854934-74854953 | None:intergenic | 30.0% | |
| TGTTATCATACTTGTCAACT+TGG | + | chr4_1:74855039-74855058 | Msa0572070:intron | 30.0% | |
| TTGCAAATGCTATTACTTGT+AGG | + | chr4_1:74855109-74855128 | Msa0572070:intron | 30.0% | |
| TGCAAATGCTATTACTTGTA+GGG | + | chr4_1:74855110-74855129 | Msa0572070:intron | 30.0% | |
| GAGTAGTATAGTATATACTG+TGG | + | chr4_1:74855191-74855210 | Msa0572070:intron | 30.0% | |
| TGAATGTTTAGAAGTGGAGA+AGG | - | chr4_1:74852835-74852854 | None:intergenic | 35.0% | |
| GAGGATTGAATGTTTAGAAG+TGG | - | chr4_1:74852841-74852860 | None:intergenic | 35.0% | |
| GAAAAATTAAGAGAGGGAGT+AGG | - | chr4_1:74852863-74852882 | None:intergenic | 35.0% | |
| TTGGACTCAAGTGAAAATGA+AGG | + | chr4_1:74852938-74852957 | Msa0572070:exon | 35.0% | |
| GTAGAAAATAGTGGTGAAGT+TGG | + | chr4_1:74853482-74853501 | Msa0572070:intron | 35.0% | |
| AAAGCAGAAAGCCATGAAAT+CGG | + | chr4_1:74853524-74853543 | Msa0572070:CDS | 35.0% | |
| GGAATTTGTACTAAAAGGAC+AGG | - | chr4_1:74853631-74853650 | None:intergenic | 35.0% | |
| CATGTGCACTTATTTAACCA+TGG | + | chr4_1:74853876-74853895 | Msa0572070:intron | 35.0% | |
| ! | ATTTGAACAACCGTTCGTTT+TGG | + | chr4_1:74853966-74853985 | Msa0572070:intron | 35.0% |
| ! | TTTGAACAACCGTTCGTTTT+GGG | + | chr4_1:74853967-74853986 | Msa0572070:intron | 35.0% |
| ACACATTGTCATGTATGAGT+CGG | - | chr4_1:74854011-74854030 | None:intergenic | 35.0% | |
| ATACATGACAATGTGTGGAA+TGG | + | chr4_1:74854015-74854034 | Msa0572070:intron | 35.0% | |
| AAATGGGACAACTACAAGAT+AGG | - | chr4_1:74854092-74854111 | None:intergenic | 35.0% | |
| ATTTGCTCACAACATCAACA+GGG | - | chr4_1:74854294-74854313 | None:intergenic | 35.0% | |
| ! | AATTTGCTCACAACATCAAC+AGG | - | chr4_1:74854295-74854314 | None:intergenic | 35.0% |
| ATTGAGAAAAACTTGGCACA+CGG | + | chr4_1:74854312-74854331 | Msa0572070:CDS | 35.0% | |
| ! | TTGGCACACGGAAATTTTAA+CGG | + | chr4_1:74854324-74854343 | Msa0572070:CDS | 35.0% |
| !! | ACACGGAAATTTTAACGGTT+GGG | + | chr4_1:74854329-74854348 | Msa0572070:CDS | 35.0% |
| ! | AGCTCAGCAATTTGTTCATT+TGG | - | chr4_1:74854436-74854455 | None:intergenic | 35.0% |
| GAGCTTATTAAGCAATACAG+AGG | + | chr4_1:74854451-74854470 | Msa0572070:CDS | 35.0% | |
| CAACAGATAACACAAGCATT+TGG | - | chr4_1:74854529-74854548 | None:intergenic | 35.0% | |
| AGTGGTCATTGGATTGAAAT+TGG | + | chr4_1:74854647-74854666 | Msa0572070:intron | 35.0% | |
| GCAAATGCTATTACTTGTAG+GGG | + | chr4_1:74855111-74855130 | Msa0572070:intron | 35.0% | |
| ATACTACTCCAAGACAAGTA+AGG | - | chr4_1:74855180-74855199 | None:intergenic | 35.0% | |
| AGTTTGAATTGATGCAGACA+AGG | + | chr4_1:74855249-74855268 | Msa0572070:intron | 35.0% | |
| !!! | GGCACTTGTTTGACTTGTTT+TGG | + | chr4_1:74852732-74852751 | Msa0572070:five_prime_UTR | 40.0% |
| ATGGAATGCAACTTCGTGTT+GGG | - | chr4_1:74852801-74852820 | None:intergenic | 40.0% | |
| AAATTAAGAGAGGGAGTAGG+AGG | - | chr4_1:74852860-74852879 | None:intergenic | 40.0% | |
| ! | AAGGCTAGAAACCGATTTCA+TGG | - | chr4_1:74853538-74853557 | None:intergenic | 40.0% |
| !! | AAATCGGTTTCTAGCCTTTC+AGG | + | chr4_1:74853540-74853559 | Msa0572070:CDS | 40.0% |
| ! | TTGAACAACCGTTCGTTTTG+GGG | + | chr4_1:74853968-74853987 | Msa0572070:intron | 40.0% |
| GACTCATACATGACAATGTG+TGG | + | chr4_1:74854010-74854029 | Msa0572070:intron | 40.0% | |
| TGACAATGTGTGGAATGGTA+TGG | + | chr4_1:74854020-74854039 | Msa0572070:intron | 40.0% | |
| ! | TGTCCGATTGAGACATGTTT+TGG | - | chr4_1:74854166-74854185 | None:intergenic | 40.0% |
| !! | CACACGGAAATTTTAACGGT+TGG | + | chr4_1:74854328-74854347 | Msa0572070:CDS | 40.0% |
| !!! | CCTTCGTCTTTTTTCTTCTC+CGG | - | chr4_1:74854367-74854386 | None:intergenic | 40.0% |
| CTATCATGTTCAGAGTGTAG+AGG | + | chr4_1:74854498-74854517 | Msa0572070:CDS | 40.0% | |
| TCAGAGACGTCACTAATCAT+TGG | - | chr4_1:74854752-74854771 | None:intergenic | 40.0% | |
| TGAGCTCACCAATTCAACTA+TGG | - | chr4_1:74854816-74854835 | None:intergenic | 40.0% | |
| AGTTGAATTGGTGAGCTCAA+TGG | + | chr4_1:74854817-74854836 | Msa0572070:intron | 40.0% | |
| GTGAGCTCAATGGAATTGAT+TGG | + | chr4_1:74854827-74854846 | Msa0572070:intron | 40.0% | |
| TATTAGATTGAGACGTCCTG+AGG | + | chr4_1:74854915-74854934 | Msa0572070:intron | 40.0% | |
| TGCTAGATCCTTACTTGTCT+TGG | + | chr4_1:74855169-74855188 | Msa0572070:intron | 40.0% | |
| GATGGAATGCAACTTCGTGT+TGG | - | chr4_1:74852802-74852821 | None:intergenic | 45.0% | |
| GGAGAAGGAGCAAAGAAAGA+TGG | - | chr4_1:74852820-74852839 | None:intergenic | 45.0% | |
| ATGGTCGTGTACTCTTGCTT+AGG | - | chr4_1:74852997-74853016 | None:intergenic | 45.0% | |
| CACTGGTCACTACACTACTA+AGG | + | chr4_1:74853567-74853586 | Msa0572070:intron | 45.0% | |
| ACAGTTGTCCCCAAAACGAA+CGG | - | chr4_1:74853979-74853998 | None:intergenic | 45.0% | |
| !! | AGGCATTGATTCTATCGCCA+TGG | + | chr4_1:74854228-74854247 | Msa0572070:intron | 45.0% |
| TTCTATCGCCATGGACATGA+AGG | + | chr4_1:74854237-74854256 | Msa0572070:CDS | 45.0% | |
| CTTCTTGTCCTTCATGTCCA+TGG | - | chr4_1:74854248-74854267 | None:intergenic | 45.0% | |
| !! | GGAAATTTTAACGGTTGGGC+CGG | + | chr4_1:74854333-74854352 | Msa0572070:CDS | 45.0% |
| CCGGAGAAGAAAAAAGACGA+AGG | + | chr4_1:74854364-74854383 | Msa0572070:CDS | 45.0% | |
| !! | CATGTTATTAGGAGCGTCAG+TGG | + | chr4_1:74854629-74854648 | Msa0572070:intron | 45.0% |
| TTGAGACGTCCTGAGGATTA+TGG | + | chr4_1:74854922-74854941 | Msa0572070:intron | 45.0% | |
| GTGTTACAATGCACACATCC+AGG | + | chr4_1:74854988-74855007 | Msa0572070:intron | 45.0% | |
| ATGGCACAATGAACAAGTCC+TGG | - | chr4_1:74855009-74855028 | None:intergenic | 45.0% | |
| !! | ATATCAAAAATAAATAATAA+AGG | + | chr4_1:74854065-74854084 | Msa0572070:intron | 5.0% |
| ! | CTAGCCTTTCAGGTACTCAC+TGG | + | chr4_1:74853550-74853569 | Msa0572070:intron | 50.0% |
| GTGACCAGTGAGTACCTGAA+AGG | - | chr4_1:74853557-74853576 | None:intergenic | 50.0% | |
| GAAGGACAAGAAGCTGACAG+TGG | + | chr4_1:74854255-74854274 | Msa0572070:CDS | 50.0% | |
| GACAAGAAGCTGACAGTGGT+GGG | + | chr4_1:74854259-74854278 | Msa0572070:CDS | 50.0% | |
| ! | TTCTTCTCCGGCTCTTTTGC+CGG | - | chr4_1:74854355-74854374 | None:intergenic | 50.0% |
| !! | TTAGGAGCGTCAGTGGTCAT+TGG | + | chr4_1:74854636-74854655 | Msa0572070:intron | 50.0% |
| GGACAAGAAGCTGACAGTGG+TGG | + | chr4_1:74854258-74854277 | Msa0572070:CDS | 55.0% | |
| GGTTGGGCCGGCAAAAGAGC+CGG | + | chr4_1:74854345-74854364 | Msa0572070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74852728 | 74855285 | 74852728 | ID=Msa0572070;Name=Msa0572070 |
| chr4_1 | mRNA | 74852728 | 74855285 | 74852728 | ID=Msa0572070-mRNA-1;Parent=Msa0572070;Name=Msa0572070-mRNA-1;_AED=0.29;_eAED=0.29;_QI=226|0.66|0.5|0.75|1|1|4|0|135 |
| chr4_1 | exon | 74852728 | 74852959 | 74852728 | ID=Msa0572070-mRNA-1:exon:25868;Parent=Msa0572070-mRNA-1 |
| chr4_1 | exon | 74853486 | 74853561 | 74853486 | ID=Msa0572070-mRNA-1:exon:25869;Parent=Msa0572070-mRNA-1 |
| chr4_1 | exon | 74854230 | 74854535 | 74854230 | ID=Msa0572070-mRNA-1:exon:25870;Parent=Msa0572070-mRNA-1 |
| chr4_1 | exon | 74855266 | 74855285 | 74855266 | ID=Msa0572070-mRNA-1:exon:25871;Parent=Msa0572070-mRNA-1 |
| chr4_1 | five_prime_UTR | 74852728 | 74852953 | 74852728 | ID=Msa0572070-mRNA-1:five_prime_utr;Parent=Msa0572070-mRNA-1 |
| chr4_1 | CDS | 74852954 | 74852959 | 74852954 | ID=Msa0572070-mRNA-1:cds;Parent=Msa0572070-mRNA-1 |
| chr4_1 | CDS | 74853486 | 74853561 | 74853486 | ID=Msa0572070-mRNA-1:cds;Parent=Msa0572070-mRNA-1 |
| chr4_1 | CDS | 74854230 | 74854535 | 74854230 | ID=Msa0572070-mRNA-1:cds;Parent=Msa0572070-mRNA-1 |
| chr4_1 | CDS | 74855266 | 74855285 | 74855266 | ID=Msa0572070-mRNA-1:cds;Parent=Msa0572070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
