Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386660 | XP_013447106.1 | 87.200 | 125 | 10 | 1 | 1 | 125 | 1 | 119 | 3.82e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386660 | sp|O03982|HIP39_ARATH | 46.386 | 166 | 45 | 3 | 1 | 122 | 1 | 166 | 1.85e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386660 | A0A072TW71 | 87.200 | 125 | 10 | 1 | 1 | 125 | 1 | 119 | 1.82e-59 | 189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1363390 | Msa1386660 | 0.967902 | 6.391268e-128 | -8.615850e-47 |
| Msa0306610 | Msa1386660 | 0.945114 | 5.592032e-104 | -8.615850e-47 |
| Msa0572070 | Msa1386660 | 0.802784 | 4.760380e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386660 | MtrunA17_Chr8g0387471 | 87.200 | 125 | 10 | 1 | 1 | 125 | 1 | 119 | 3.51e-63 | 189 |
| Msa1386660 | MtrunA17_Chr6g0469651 | 53.509 | 114 | 50 | 1 | 1 | 114 | 1 | 111 | 2.57e-28 | 101 |
| Msa1386660 | MtrunA17_Chr1g0202541 | 64.286 | 70 | 25 | 0 | 1 | 70 | 1 | 70 | 5.53e-28 | 100 |
| Msa1386660 | MtrunA17_Chr7g0248671 | 73.239 | 71 | 19 | 0 | 1 | 71 | 1 | 71 | 8.15e-28 | 100 |
| Msa1386660 | MtrunA17_Chr6g0469671 | 62.857 | 70 | 26 | 0 | 1 | 70 | 1 | 70 | 1.58e-27 | 98.2 |
| Msa1386660 | MtrunA17_Chr6g0469571 | 65.714 | 70 | 24 | 0 | 1 | 70 | 1 | 70 | 2.60e-27 | 98.2 |
| Msa1386660 | MtrunA17_Chr1g0202561 | 62.857 | 70 | 26 | 0 | 1 | 70 | 1 | 70 | 3.72e-27 | 98.2 |
| Msa1386660 | MtrunA17_Chr8g0348361 | 49.645 | 141 | 55 | 1 | 1 | 125 | 1 | 141 | 4.57e-27 | 98.6 |
| Msa1386660 | MtrunA17_Chr6g0469551 | 64.286 | 70 | 25 | 0 | 1 | 70 | 1 | 70 | 7.46e-27 | 97.1 |
| Msa1386660 | MtrunA17_Chr6g0469681 | 61.429 | 70 | 27 | 0 | 1 | 70 | 1 | 70 | 1.23e-26 | 96.7 |
| Msa1386660 | MtrunA17_Chr1g0202581 | 67.143 | 70 | 22 | 1 | 1 | 70 | 1 | 69 | 8.89e-26 | 94.7 |
| Msa1386660 | MtrunA17_Chr6g0469591 | 62.857 | 70 | 26 | 0 | 1 | 70 | 1 | 70 | 2.69e-25 | 93.2 |
| Msa1386660 | MtrunA17_Chr1g0204291 | 64.286 | 70 | 24 | 1 | 1 | 70 | 1 | 69 | 8.21e-25 | 92.0 |
| Msa1386660 | MtrunA17_Chr7g0233181 | 53.947 | 76 | 35 | 0 | 1 | 76 | 1 | 76 | 8.44e-25 | 91.3 |
| Msa1386660 | MtrunA17_Chr7g0233251 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 2.97e-24 | 90.1 |
| Msa1386660 | MtrunA17_Chr6g0469541 | 48.750 | 80 | 41 | 0 | 1 | 80 | 1 | 80 | 5.92e-24 | 89.4 |
| Msa1386660 | MtrunA17_Chr7g0233211 | 51.190 | 84 | 39 | 1 | 1 | 84 | 1 | 82 | 7.93e-24 | 89.0 |
| Msa1386660 | MtrunA17_Chr7g0233191 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 8.94e-24 | 89.0 |
| Msa1386660 | MtrunA17_Chr7g0233201 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 1.37e-23 | 88.6 |
| Msa1386660 | MtrunA17_Chr7g0233231 | 53.333 | 75 | 35 | 0 | 1 | 75 | 1 | 75 | 7.34e-23 | 86.7 |
| Msa1386660 | MtrunA17_Chr1g0202501 | 52.475 | 101 | 40 | 1 | 1 | 101 | 1 | 93 | 4.41e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386660 | AT1G01490.1 | 46.386 | 166 | 45 | 3 | 1 | 122 | 1 | 166 | 1.88e-33 | 115 |
| Msa1386660 | AT1G01490.2 | 46.386 | 166 | 45 | 3 | 1 | 122 | 1 | 166 | 1.88e-33 | 115 |
| Msa1386660 | AT1G01490.4 | 44.910 | 167 | 48 | 3 | 3 | 125 | 30 | 196 | 2.32e-32 | 114 |
| Msa1386660 | AT5G52740.1 | 52.778 | 72 | 32 | 1 | 1 | 72 | 1 | 70 | 6.25e-18 | 74.3 |
| Msa1386660 | AT5G52760.1 | 38.017 | 121 | 57 | 4 | 2 | 119 | 4 | 109 | 5.11e-16 | 69.7 |
| Msa1386660 | AT1G01490.3 | 35.294 | 136 | 44 | 3 | 34 | 125 | 1 | 136 | 2.19e-13 | 63.5 |
| Msa1386660 | AT1G63950.2 | 44.776 | 67 | 37 | 0 | 1 | 67 | 1 | 67 | 6.41e-13 | 61.6 |
| Msa1386660 | AT1G63960.2 | 40.000 | 70 | 41 | 1 | 1 | 69 | 11 | 80 | 2.17e-12 | 60.8 |
| Msa1386660 | AT5G52750.1 | 43.077 | 65 | 37 | 0 | 3 | 67 | 5 | 69 | 2.45e-11 | 57.8 |
| Msa1386660 | AT1G63950.1 | 42.188 | 64 | 37 | 0 | 4 | 67 | 1 | 64 | 4.44e-11 | 56.6 |
Find 33 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCGGTTTCTAGCCTTTC+AGG | 0.141123 | tig0020834:+92893 | Msa1386660:CDS |
| GGCACTTGTTTGACTTGTTT+TGG | 0.244120 | tig0020834:+92093 | Msa1386660:five_prime_UTR |
| AGCTCAGCAATTTGTTCATT+TGG | 0.261412 | tig0020834:-93765 | None:intergenic |
| TTGACTGATCTTCAAAACTT+TGG | 0.364724 | tig0020834:+92281 | Msa1386660:five_prime_UTR |
| AAGTGTTGATATTTAATTGT+AGG | 0.377594 | tig0020834:-92260 | None:intergenic |
| AATTTGCTCACAACATCAAC+AGG | 0.390553 | tig0020834:-93624 | None:intergenic |
| TGCTAGATCCTTACTTGTCT+TGG | 0.397950 | tig0020834:+94500 | Msa1386660:CDS |
| AAGGCTAGAAACCGATTTCA+TGG | 0.398452 | tig0020834:-92888 | None:intergenic |
| CTTCTTGTCTTTCATGTCCA+TGG | 0.402527 | tig0020834:-93577 | None:intergenic |
| ATGATAGTATTGAGTCATGT+AGG | 0.445771 | tig0020834:-93814 | None:intergenic |
| GGAGAAGGAGCAGAGAAAGA+TGG | 0.462159 | tig0020834:-92178 | None:intergenic |
| ATGGAATGCAACTTCGTGTT+GGG | 0.465202 | tig0020834:-92159 | None:intergenic |
| TGAATGTTTAGAAGTGGAGA+AGG | 0.466461 | tig0020834:-92193 | None:intergenic |
| TTTGTTCTTGTAGAAAATAG+TGG | 0.476254 | tig0020834:+92826 | Msa1386660:intron |
| GTAGAAAATAGTGGTGAAGT+TGG | 0.484582 | tig0020834:+92835 | Msa1386660:intron |
| AAGGATTGAATGTTTAGAAG+TGG | 0.485327 | tig0020834:-92199 | None:intergenic |
| AAAGCAGAAAGCCATGAAAT+CGG | 0.493020 | tig0020834:+92877 | Msa1386660:CDS |
| GTTGATATTTAATTGTAGGA+AGG | 0.500952 | tig0020834:-92256 | None:intergenic |
| GATATTTAATTGTAGGAAGG+AGG | 0.504732 | tig0020834:-92253 | None:intergenic |
| ATACTACTCCAAGACAAGTA+AGG | 0.531708 | tig0020834:-94508 | None:intergenic |
| AATTAAGAGAGGGAGTAGGA+AGG | 0.531811 | tig0020834:-92218 | None:intergenic |
| GGTTGGGCCGGCAAAAGAGC+CGG | 0.542911 | tig0020834:+93677 | Msa1386660:CDS |
| GACAAGAAGTTGACAGTGGT+GGG | 0.556215 | tig0020834:+93591 | Msa1386660:CDS |
| TGATAGTATTGAGTCATGTA+GGG | 0.568680 | tig0020834:-93813 | None:intergenic |
| GATGGAATGCAACTTCGTGT+TGG | 0.579616 | tig0020834:-92160 | None:intergenic |
| AGACAAGAAGTTGACAGTGG+TGG | 0.596259 | tig0020834:+93590 | Msa1386660:CDS |
| TTGGACTCAAGTGAAAATGA+AGG | 0.600404 | tig0020834:+92300 | Msa1386660:exon |
| AGGCATTGATTCTATCGCCA+TGG | 0.631632 | tig0020834:+93560 | Msa1386660:intron |
| GTGACCAGTGAGTACCTGAA+AGG | 0.659865 | tig0020834:-92907 | None:intergenic |
| GAGCTTATTAAGCAATACAG+AGG | 0.663132 | tig0020834:+93783 | Msa1386660:CDS |
| ATTTGCTCACAACATCAACA+GGG | 0.737533 | tig0020834:-93623 | None:intergenic |
| GAAAGACAAGAAGTTGACAG+TGG | 0.740845 | tig0020834:+93587 | Msa1386660:CDS |
| TCTTGGAGTAGTATATACTG+TGG | 0.754791 | tig0020834:+94517 | Msa1386660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTTATTAATTATT+TGG | + | tig0020834:93205-93224 | Msa1386660:intron | 0.0% |
| !! | ATTAATTAAACTATTATAGT+TGG | + | tig0020834:92574-92593 | Msa1386660:intron | 10.0% |
| !! | ATTTACTATTACTAAATTAA+TGG | - | tig0020834:92958-92977 | None:intergenic | 10.0% |
| !! | ATTTCATATCAATTCAAATA+AGG | + | tig0020834:92437-92456 | Msa1386660:intron | 15.0% |
| !! | TTTAATTAATGAAACAAGTA+AGG | - | tig0020834:92564-92583 | None:intergenic | 15.0% |
| !! | TAATAATGATTTCAATTCTT+AGG | + | tig0020834:92795-92814 | Msa1386660:intron | 15.0% |
| !! | ATTAATAAATAAATATCTGC+TGG | - | tig0020834:93201-93220 | None:intergenic | 15.0% |
| !!! | ATGTATTTTTACACATAAAT+GGG | - | tig0020834:93451-93470 | None:intergenic | 15.0% |
| !!! | ATGTTTTGGTTTTTTATATT+TGG | - | tig0020834:93484-93503 | None:intergenic | 15.0% |
| !!! | ATTCAAATCATTAACTATTT+TGG | - | tig0020834:93538-93557 | None:intergenic | 15.0% |
| !! | TATGATAACACAAATTTAAA+TGG | - | tig0020834:94359-94378 | None:intergenic | 15.0% |
| !! | TGAATAGAAAAATTAAGAGA+GGG | - | tig0020834:92231-92250 | None:intergenic | 20.0% |
| !!! | AAGTGTTGATATTTAATTGT+AGG | - | tig0020834:92263-92282 | None:intergenic | 20.0% |
| !! | GAAATAAACAAGAAATTGAA+AGG | - | tig0020834:92422-92441 | None:intergenic | 20.0% |
| !! | AGAAATATTGAATACTTGAA+TGG | - | tig0020834:92467-92486 | None:intergenic | 20.0% |
| !! | ATTACTAAATTAATGGAGTA+AGG | - | tig0020834:92951-92970 | None:intergenic | 20.0% |
| !! | TTAATGGAATTTGTACTAAA+AGG | - | tig0020834:92989-93008 | None:intergenic | 20.0% |
| !!! | TCGAGTTTTAAAATGTTTAA+TGG | - | tig0020834:93005-93024 | None:intergenic | 20.0% |
| !! | TGAACCTTTGTTAATTAAAA+TGG | + | tig0020834:93171-93190 | Msa1386660:intron | 20.0% |
| !!! | GATGTATTTTTACACATAAA+TGG | - | tig0020834:93452-93471 | None:intergenic | 20.0% |
| !! | GAAAAATTAAACAATAAGCT+TGG | + | tig0020834:94031-94050 | Msa1386660:intron | 20.0% |
| ! | GTGAATAGAAAAATTAAGAG+AGG | - | tig0020834:92232-92251 | None:intergenic | 25.0% |
| ! | GTTGATATTTAATTGTAGGA+AGG | - | tig0020834:92259-92278 | None:intergenic | 25.0% |
| ! | GATTTCTTGCTCTAATTTAA+AGG | + | tig0020834:92326-92345 | Msa1386660:intron | 25.0% |
| ! | TCAAAGAAAAAAACAGAACA+TGG | - | tig0020834:92378-92397 | None:intergenic | 25.0% |
| ! | AGAAATTGAAAGGAAAAAAG+AGG | - | tig0020834:92412-92431 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACTGAGTAAGG+TGG | - | tig0020834:92499-92518 | None:intergenic | 25.0% |
| ! | CTGAAAAAAAAAACTGAGTA+AGG | - | tig0020834:92502-92521 | None:intergenic | 25.0% |
| ! | AATGAAACAAGTAAGGAAAT+GGG | - | tig0020834:92557-92576 | None:intergenic | 25.0% |
| ! | TAATGAAACAAGTAAGGAAA+TGG | - | tig0020834:92558-92577 | None:intergenic | 25.0% |
| ! | ATGTAATGAAAAAACAAAGC+AGG | - | tig0020834:92750-92769 | None:intergenic | 25.0% |
| ! | TTTGTTCTTGTAGAAAATAG+TGG | + | tig0020834:92826-92845 | Msa1386660:intron | 25.0% |
| ! | CCTTTGTTAATTAAAATGGA+CGG | + | tig0020834:93175-93194 | Msa1386660:intron | 25.0% |
| !!! | ATATGATTTTTTGCTTGCTT+TGG | - | tig0020834:93392-93411 | None:intergenic | 25.0% |
| ! | ATAGTTAATGATTTGAATGC+AGG | + | tig0020834:93540-93559 | Msa1386660:intron | 25.0% |
| ! | AAAGCATAGAATAGAAGATT+TGG | + | tig0020834:93906-93925 | Msa1386660:intron | 25.0% |
| ! | TAGAAGATTTGGATTTAATG+CGG | + | tig0020834:93917-93936 | Msa1386660:intron | 25.0% |
| ! | ATCTAAATCCATAGTTGAAT+TGG | + | tig0020834:94133-94152 | Msa1386660:intron | 25.0% |
| ! | TTGCGTGTAAATTATGAATT+AGG | + | tig0020834:94202-94221 | Msa1386660:intron | 25.0% |
| ! | GGATTATGGTGTATTAAAAT+AGG | + | tig0020834:94267-94286 | Msa1386660:intron | 25.0% |
| ! | TGTATTAAAATAGGCTATGA+AGG | + | tig0020834:94276-94295 | Msa1386660:intron | 25.0% |
| AAGGATTGAATGTTTAGAAG+TGG | - | tig0020834:92202-92221 | None:intergenic | 30.0% | |
| GATATTTAATTGTAGGAAGG+AGG | - | tig0020834:92256-92275 | None:intergenic | 30.0% | |
| TTGACTGATCTTCAAAACTT+TGG | + | tig0020834:92281-92300 | Msa1386660:five_prime_UTR | 30.0% | |
| ATGAAACAAGTAAGGAAATG+GGG | - | tig0020834:92556-92575 | None:intergenic | 30.0% | |
| GCTAAACACGATTTAATAGA+AGG | + | tig0020834:92670-92689 | Msa1386660:intron | 30.0% | |
| CAGGAAAATGAAATCATTGT+TGG | - | tig0020834:93105-93124 | None:intergenic | 30.0% | |
| TTCCTGAGTAAGTATACAAT+TGG | + | tig0020834:93119-93138 | Msa1386660:intron | 30.0% | |
| !!! | CCGTCCATTTTAATTAACAA+AGG | - | tig0020834:93178-93197 | None:intergenic | 30.0% |
| ATTCAAAAAACATCACTCCA+TGG | - | tig0020834:93249-93268 | None:intergenic | 30.0% | |
| ATACATGACAATGTGTGAAA+TGG | + | tig0020834:93358-93377 | Msa1386660:intron | 30.0% | |
| AAACCAAAACATGTCTCAAT+CGG | + | tig0020834:93492-93511 | Msa1386660:intron | 30.0% | |
| TGAGCAAATTGAGAAAAACT+TGG | + | tig0020834:93637-93656 | Msa1386660:CDS | 30.0% | |
| ! | TTGGCACACAGAAATTTTAA+CGG | + | tig0020834:93656-93675 | Msa1386660:CDS | 30.0% |
| !! | ACACAGAAATTTTAACGGTT+GGG | + | tig0020834:93661-93680 | Msa1386660:CDS | 30.0% |
| ! | TGATAGTATTGAGTCATGTA+GGG | - | tig0020834:93816-93835 | None:intergenic | 30.0% |
| ! | ATGATAGTATTGAGTCATGT+AGG | - | tig0020834:93817-93836 | None:intergenic | 30.0% |
| AACAGATAACACAAGCATTT+GGG | - | tig0020834:93860-93879 | None:intergenic | 30.0% | |
| ATTCTATGCTTTCTCAATCA+AGG | - | tig0020834:93898-93917 | None:intergenic | 30.0% | |
| ! | AATGTGTGGATTGTTAATTG+CGG | + | tig0020834:94107-94126 | Msa1386660:intron | 30.0% |
| TTGGACATGAACAAAAAGTA+AGG | + | tig0020834:94174-94193 | Msa1386660:intron | 30.0% | |
| TGTTATCATACTTGTCAACT+TGG | + | tig0020834:94369-94388 | Msa1386660:intron | 30.0% | |
| TTGCAAATGCTATTACTTGT+AGG | + | tig0020834:94439-94458 | Msa1386660:intron | 30.0% | |
| TGCAAATGCTATTACTTGTA+GGG | + | tig0020834:94440-94459 | Msa1386660:intron | 30.0% | |
| TGAATGTTTAGAAGTGGAGA+AGG | - | tig0020834:92196-92215 | None:intergenic | 35.0% | |
| GAAAAATTAAGAGAGGGAGT+AGG | - | tig0020834:92225-92244 | None:intergenic | 35.0% | |
| TTGGACTCAAGTGAAAATGA+AGG | + | tig0020834:92300-92319 | Msa1386660:exon | 35.0% | |
| GTAGAAAATAGTGGTGAAGT+TGG | + | tig0020834:92835-92854 | Msa1386660:intron | 35.0% | |
| AAAGCAGAAAGCCATGAAAT+CGG | + | tig0020834:92877-92896 | Msa1386660:CDS | 35.0% | |
| GGAATTTGTACTAAAAGGAC+AGG | - | tig0020834:92984-93003 | None:intergenic | 35.0% | |
| GTCCAATTGTATACTTACTC+AGG | - | tig0020834:93124-93143 | None:intergenic | 35.0% | |
| CATGTGCACTTATTTAACCA+TGG | + | tig0020834:93229-93248 | Msa1386660:intron | 35.0% | |
| ! | ATTTGAACAACCGTTCGTTT+TGG | + | tig0020834:93309-93328 | Msa1386660:intron | 35.0% |
| ! | TTTGAACAACCGTTCGTTTT+GGG | + | tig0020834:93310-93329 | Msa1386660:intron | 35.0% |
| ACACATTGTCATGTATGAGT+CGG | - | tig0020834:93354-93373 | None:intergenic | 35.0% | |
| TGACAATGTGTGAAATGGTA+TGG | + | tig0020834:93363-93382 | Msa1386660:intron | 35.0% | |
| ATTTGCTCACAACATCAACA+GGG | - | tig0020834:93626-93645 | None:intergenic | 35.0% | |
| ! | AATTTGCTCACAACATCAAC+AGG | - | tig0020834:93627-93646 | None:intergenic | 35.0% |
| !! | CACACAGAAATTTTAACGGT+TGG | + | tig0020834:93660-93679 | Msa1386660:CDS | 35.0% |
| ! | AGCTCAGCAATTTGTTCATT+TGG | - | tig0020834:93768-93787 | None:intergenic | 35.0% |
| GAGCTTATTAAGCAATACAG+AGG | + | tig0020834:93783-93802 | Msa1386660:CDS | 35.0% | |
| CAACAGATAACACAAGCATT+TGG | - | tig0020834:93861-93880 | None:intergenic | 35.0% | |
| TTTCACACATTCACGCTATT+AGG | + | tig0020834:93946-93965 | Msa1386660:intron | 35.0% | |
| CAATTTCAATCCAATGACCA+CGG | - | tig0020834:93977-93996 | None:intergenic | 35.0% | |
| ATCATTGGATTGAGATCACA+CGG | - | tig0020834:94065-94084 | None:intergenic | 35.0% | |
| AATACACCATAATCCTCATC+AGG | - | tig0020834:94262-94281 | None:intergenic | 35.0% | |
| GCAAATGCTATTACTTGTAG+GGG | + | tig0020834:94441-94460 | Msa1386660:intron | 35.0% | |
| ATACTACTCCAAGACAAGTA+AGG | - | tig0020834:94511-94530 | None:intergenic | 35.0% | |
| TCTTGGAGTAGTATATACTG+TGG | + | tig0020834:94517-94536 | Msa1386660:CDS | 35.0% | |
| !!! | GGCACTTGTTTGACTTGTTT+TGG | + | tig0020834:92093-92112 | Msa1386660:five_prime_UTR | 40.0% |
| ATGGAATGCAACTTCGTGTT+GGG | - | tig0020834:92162-92181 | None:intergenic | 40.0% | |
| AATTAAGAGAGGGAGTAGGA+AGG | - | tig0020834:92221-92240 | None:intergenic | 40.0% | |
| ! | AAGGCTAGAAACCGATTTCA+TGG | - | tig0020834:92891-92910 | None:intergenic | 40.0% |
| !! | AAATCGGTTTCTAGCCTTTC+AGG | + | tig0020834:92893-92912 | Msa1386660:CDS | 40.0% |
| ! | TTGAACAACCGTTCGTTTTG+GGG | + | tig0020834:93311-93330 | Msa1386660:intron | 40.0% |
| ACATAAATGGGACAACTGCA+AGG | - | tig0020834:93439-93458 | None:intergenic | 40.0% | |
| ! | TGTCCGATTGAGACATGTTT+TGG | - | tig0020834:93498-93517 | None:intergenic | 40.0% |
| CTTCTTGTCTTTCATGTCCA+TGG | - | tig0020834:93580-93599 | None:intergenic | 40.0% | |
| GAAAGACAAGAAGTTGACAG+TGG | + | tig0020834:93587-93606 | Msa1386660:CDS | 40.0% | |
| !! | AGAAATTTTAACGGTTGGGC+CGG | + | tig0020834:93665-93684 | Msa1386660:CDS | 40.0% |
| !!! | CCTTCGTCTTTTTTCTTCTC+CGG | - | tig0020834:93699-93718 | None:intergenic | 40.0% |
| CGTGGTCATTGGATTGAAAT+TGG | + | tig0020834:93975-93994 | Msa1386660:intron | 40.0% | |
| TGAGCTCACCAATTCAACTA+TGG | - | tig0020834:94144-94163 | None:intergenic | 40.0% | |
| AGTTGAATTGGTGAGCTCAA+TGG | + | tig0020834:94145-94164 | Msa1386660:intron | 40.0% | |
| GTGAGCTCAATGGAATTGAT+TGG | + | tig0020834:94155-94174 | Msa1386660:intron | 40.0% | |
| GTGTTTCAATTCACACATCC+AGG | + | tig0020834:94319-94338 | Msa1386660:intron | 40.0% | |
| TGCTAGATCCTTACTTGTCT+TGG | + | tig0020834:94500-94519 | Msa1386660:CDS | 40.0% | |
| GATGGAATGCAACTTCGTGT+TGG | - | tig0020834:92163-92182 | None:intergenic | 45.0% | |
| ATGGTCGTGTACTCTTGCTT+AGG | - | tig0020834:92359-92378 | None:intergenic | 45.0% | |
| CACTGGTCACTACACTACTA+AGG | + | tig0020834:92920-92939 | Msa1386660:intron | 45.0% | |
| ACAGTTGTCCCCAAAACGAA+CGG | - | tig0020834:93322-93341 | None:intergenic | 45.0% | |
| !! | AGGCATTGATTCTATCGCCA+TGG | + | tig0020834:93560-93579 | Msa1386660:intron | 45.0% |
| AGACAAGAAGTTGACAGTGG+TGG | + | tig0020834:93590-93609 | Msa1386660:CDS | 45.0% | |
| GACAAGAAGTTGACAGTGGT+GGG | + | tig0020834:93591-93610 | Msa1386660:CDS | 45.0% | |
| CCGGAGAAGAAAAAAGACGA+AGG | + | tig0020834:93696-93715 | Msa1386660:CDS | 45.0% | |
| !! | TCAGAGGCGTCACTAATCAT+TGG | - | tig0020834:94080-94099 | None:intergenic | 45.0% |
| CCACACATTCATGTAGTCAG+AGG | - | tig0020834:94096-94115 | None:intergenic | 45.0% | |
| CCTCTGACTACATGAATGTG+TGG | + | tig0020834:94093-94112 | Msa1386660:intron | 45.0% | |
| TAGATTGAGACGTCCTGATG+AGG | + | tig0020834:94246-94265 | Msa1386660:intron | 45.0% | |
| AGACGTCCTGATGAGGATTA+TGG | + | tig0020834:94253-94272 | Msa1386660:intron | 45.0% | |
| ATGGCACAATGAACAAGTCC+TGG | - | tig0020834:94340-94359 | None:intergenic | 45.0% | |
| !! | ATATCAAAAATAAATAATAA+AGG | + | tig0020834:93408-93427 | Msa1386660:intron | 5.0% |
| GGAGAAGGAGCAGAGAAAGA+TGG | - | tig0020834:92181-92200 | None:intergenic | 50.0% | |
| ! | CTAGCCTTTCAGGTACTCAC+TGG | + | tig0020834:92903-92922 | Msa1386660:intron | 50.0% |
| GTGACCAGTGAGTACCTGAA+AGG | - | tig0020834:92910-92929 | None:intergenic | 50.0% | |
| AAATGGGACAACTGCAAGGC+TGG | - | tig0020834:93435-93454 | None:intergenic | 50.0% | |
| ! | TTCTTCTCCGGCTCTTTTGC+CGG | - | tig0020834:93687-93706 | None:intergenic | 50.0% |
| !! | TTAGGAGTGTCCGTGGTCAT+TGG | + | tig0020834:93964-93983 | Msa1386660:intron | 50.0% |
| !! | CACGCTATTAGGAGTGTCCG+TGG | + | tig0020834:93957-93976 | Msa1386660:intron | 55.0% |
| GGTTGGGCCGGCAAAAGAGC+CGG | + | tig0020834:93677-93696 | Msa1386660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020834 | gene | 92089 | 94543 | 92089 | ID=Msa1386660;Name=Msa1386660 |
| tig0020834 | mRNA | 92089 | 94543 | 92089 | ID=Msa1386660-mRNA-1;Parent=Msa1386660;Name=Msa1386660-mRNA-1;_AED=0.33;_eAED=0.33;_QI=227|0.66|0.5|0.75|0.66|0.75|4|0|139 |
| tig0020834 | exon | 92089 | 92321 | 92089 | ID=Msa1386660-mRNA-1:exon:10269;Parent=Msa1386660-mRNA-1 |
| tig0020834 | exon | 92839 | 92914 | 92839 | ID=Msa1386660-mRNA-1:exon:10270;Parent=Msa1386660-mRNA-1 |
| tig0020834 | exon | 93562 | 93845 | 93562 | ID=Msa1386660-mRNA-1:exon:10271;Parent=Msa1386660-mRNA-1 |
| tig0020834 | exon | 94490 | 94543 | 94490 | ID=Msa1386660-mRNA-1:exon:10272;Parent=Msa1386660-mRNA-1 |
| tig0020834 | five_prime_UTR | 92089 | 92315 | 92089 | ID=Msa1386660-mRNA-1:five_prime_utr;Parent=Msa1386660-mRNA-1 |
| tig0020834 | CDS | 92316 | 92321 | 92316 | ID=Msa1386660-mRNA-1:cds;Parent=Msa1386660-mRNA-1 |
| tig0020834 | CDS | 92839 | 92914 | 92839 | ID=Msa1386660-mRNA-1:cds;Parent=Msa1386660-mRNA-1 |
| tig0020834 | CDS | 93562 | 93845 | 93562 | ID=Msa1386660-mRNA-1:cds;Parent=Msa1386660-mRNA-1 |
| tig0020834 | CDS | 94490 | 94543 | 94490 | ID=Msa1386660-mRNA-1:cds;Parent=Msa1386660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
