AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572090 MtrunA17_Chr8g0387491 87.601 371 10 3 1 337 1 369 0.0 640
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572090 AT1G63980.2 46.803 391 146 7 1 336 1 384 4.43e-97 293
Msa0572090 AT1G63980.1 46.565 393 146 7 1 336 1 386 9.43e-97 292

Find 105 sgRNAs with CRISPR-Local

Find 580 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCTTCAGCTTCATTT+TGG 0.156069 4_1:-74896106 None:intergenic
CATTGATTGGAGTTAGTTAT+AGG 0.247702 4_1:+74896820 Msa0572090:three_prime_UTR
AAATGTTGTAATATGTTTAA+TGG 0.254115 4_1:+74896876 Msa0572090:three_prime_UTR
ACCGGATAGCCCATTAAAAT+TGG 0.272934 4_1:+74888992 Msa0572090:five_prime_UTR
ACGTAATTGAGAGGGGTTTC+AGG 0.280025 4_1:-74889222 None:intergenic
TAGTCTCTAATGTTACTGTT+AGG 0.295990 4_1:-74889115 None:intergenic
ACGGAAAGCGGCGGATTTCC+TGG 0.296784 4_1:-74889253 None:intergenic
ATAGCATCCAGCTACTTTCT+TGG 0.306181 4_1:-74895956 None:intergenic
GAGTGGTGGGGCAATAAGTT+TGG 0.332881 4_1:+74895547 Msa0572090:CDS
CCACCACTCTGGATGGATAT+CGG 0.335771 4_1:-74895533 None:intergenic
ATTGATTGGAGTTAGTTATA+GGG 0.356104 4_1:+74896821 Msa0572090:three_prime_UTR
AATAAGTTTGGGTTTGTCTC+TGG 0.369180 4_1:+74895559 Msa0572090:CDS
AGTCTCTAATGTTACTGTTA+GGG 0.380263 4_1:-74889114 None:intergenic
AATTCCTTCAAGATCCTTTG+AGG 0.394935 4_1:-74890488 None:intergenic
AGTGGTGGGGCAATAAGTTT+GGG 0.402996 4_1:+74895548 Msa0572090:CDS
ACCAGTAGTGTCTTGTTTGT+TGG 0.410229 4_1:-74889447 None:intergenic
TGACAATGCTGATGATGAAT+TGG 0.413502 4_1:+74891582 Msa0572090:CDS
TCTTCAAAATCTTGAAAGTC+AGG 0.415020 4_1:-74891619 None:intergenic
TCCTTGTGGTCTAGTAGCTC+TGG 0.416775 4_1:-74890304 None:intergenic
TAGACCTTGCTTTCCTGTTG+TGG 0.423482 4_1:-74895917 None:intergenic
TCAATTACGTCGGTGTCGCC+AGG 0.434618 4_1:+74889235 Msa0572090:CDS
GAAGTGTAGATTGCATTGAT+TGG 0.440651 4_1:+74896807 Msa0572090:three_prime_UTR
TACTTGGTTGCGGTTGAGTT+GGG 0.442347 4_1:-74889052 None:intergenic
GGTGGAAATGGTGGTGGAAA+AGG 0.445635 4_1:+74896065 Msa0572090:CDS
ACATCTGAAATTGCTAAAAG+TGG 0.450166 4_1:+74895622 Msa0572090:CDS
TCACTTTATGTACAGGTGCC+TGG 0.454342 4_1:+74896211 Msa0572090:intron
CTACTTGGTTGCGGTTGAGT+TGG 0.457661 4_1:-74889053 None:intergenic
TTCCAGGATAAATCCACAAC+AGG 0.459724 4_1:+74895904 Msa0572090:intron
GAGTTGGGTCGGATCGGATC+GGG 0.461605 4_1:-74889037 None:intergenic
GCAGCAACCTCAGGATCAAC+AGG 0.464792 4_1:-74890276 None:intergenic
TTCAGTTTCAATGATTCTCC+AGG 0.466767 4_1:-74896229 None:intergenic
TCAAAACATTTCCATTTCCA+TGG 0.468679 4_1:+74889084 Msa0572090:five_prime_UTR
GGAAATGGTGGTGGAAAAGG+TGG 0.470669 4_1:+74896068 Msa0572090:CDS
TGAGTTGGGTCGGATCGGAT+CGG 0.472582 4_1:-74889038 None:intergenic
AAGTTTGGGTTTGTCTCTGG+TGG 0.475356 4_1:+74895562 Msa0572090:CDS
TTTGTCTCTGGTGGATTGCT+CGG 0.476345 4_1:+74895571 Msa0572090:CDS
TATTCCTCAAAGGATCTTGA+AGG 0.479143 4_1:+74890484 Msa0572090:CDS
GGTTAAGGTTTGACAAGTAC+CGG 0.481081 4_1:+74888974 None:intergenic
AACTTATTGCCCCACCACTC+TGG 0.483516 4_1:-74895544 None:intergenic
AAGGGATGGGAGGAAGGAGA+AGG 0.484539 4_1:+74889380 Msa0572090:intron
TGGGAGGAAGGAGAAGGTCT+TGG 0.485044 4_1:+74889386 Msa0572090:CDS
AGGGGTTTCAGGCGCCGCCA+TGG 0.486435 4_1:-74889211 None:intergenic
TTTCCGTCTCATGAAGCAAA+TGG 0.492523 4_1:+74889269 Msa0572090:CDS
CACCACTCTGGATGGATATC+GGG 0.496187 4_1:-74895532 None:intergenic
GACAGGACCAAGAAAGTAGC+TGG 0.500619 4_1:+74895949 Msa0572090:CDS
ATGCAATCTACACTTCGAAC+AGG 0.501917 4_1:-74896800 None:intergenic
GGTCCTTGACTTCAGCTGAC+AGG 0.505993 4_1:+74896634 Msa0572090:intron
ACTTCCAAGTGTGTGTCCAC+TGG 0.510943 4_1:+74896960 Msa0572090:three_prime_UTR
AACAGATGATGAGGTGGAAA+TGG 0.511159 4_1:+74896053 Msa0572090:CDS
TGGTTGCGGTTGAGTTGGGT+CGG 0.513962 4_1:-74889048 None:intergenic
CTGGATACAGCAGCAACCTC+AGG 0.518193 4_1:-74890285 None:intergenic
CAATTCTGTCGGCGGAACCA+TGG 0.519230 4_1:+74889194 Msa0572090:exon
TGTTGCTTACTTGAAGCAAA+AGG 0.520825 4_1:+74896321 Msa0572090:CDS
CGAAGGGAAAACAGTGCGAT+TGG 0.521301 4_1:+74896675 Msa0572090:CDS
ACAACAGGAAAGCAAGGTCT+AGG 0.522374 4_1:+74895919 Msa0572090:CDS
AGATACAAGAAAAGAGAAAG+AGG 0.522803 4_1:+74890445 Msa0572090:intron
TTTAGCAATTTCAGATGTAG+AGG 0.526470 4_1:-74895617 None:intergenic
GCGGTTGAGTTGGGTCGGAT+CGG 0.527094 4_1:-74889043 None:intergenic
AGAGAGTAACACGGCTAAGG+TGG 0.532561 4_1:+74890233 Msa0572090:intron
AAAGCAAGGTCTAGGTATCA+AGG 0.534292 4_1:+74895927 Msa0572090:CDS
TGATGAGGTGGAAATGGTGG+TGG 0.535119 4_1:+74896059 Msa0572090:CDS
TTAAAGCGTGTATTGTCAGT+AGG 0.539659 4_1:+74897031 Msa0572090:three_prime_UTR
AAGGTCTAGGTATCAAGGAC+AGG 0.540732 4_1:+74895932 Msa0572090:CDS
CGATATCCATCCAGAGTGGT+GGG 0.545992 4_1:+74895534 Msa0572090:CDS
AAAGCGATGCTACTTGGTTG+CGG 0.546358 4_1:-74889062 None:intergenic
GAACCATTTGCTTCATGAGA+CGG 0.548721 4_1:-74889272 None:intergenic
TATTGCCCCACCACTCTGGA+TGG 0.549715 4_1:-74895540 None:intergenic
AATAGAGAGTAACACGGCTA+AGG 0.551263 4_1:+74890230 Msa0572090:intron
CCGATATCCATCCAGAGTGG+TGG 0.553138 4_1:+74895533 Msa0572090:CDS
CGTCTCTCATTATTCCTCAA+AGG 0.557661 4_1:+74890474 Msa0572090:CDS
CATCTGAAATTGCTAAAAGT+GGG 0.561005 4_1:+74895623 Msa0572090:CDS
ACCAACAAACAAGACACTAC+TGG 0.561392 4_1:+74889446 Msa0572090:CDS
AAAACCAGTGGACACACACT+TGG 0.567593 4_1:-74896964 None:intergenic
TCTTATTCATTTCATTCTGG+AGG 0.580852 4_1:+74896741 Msa0572090:three_prime_UTR
AAAGAGTGACATATCTGAGG+AGG 0.582378 4_1:+74891555 Msa0572090:CDS
TAAGGTGGAAACTGAGGTGG+TGG 0.583910 4_1:+74890248 Msa0572090:CDS
TTTCAATATCTTAAAACCAG+TGG 0.586531 4_1:-74896976 None:intergenic
AGATGATGAGGTGGAAATGG+TGG 0.587185 4_1:+74896056 Msa0572090:CDS
ATACTTGGACTAAATTGTAG+AGG 0.589919 4_1:-74895684 None:intergenic
CTTCATGAGACGGAAAGCGG+CGG 0.593596 4_1:-74889262 None:intergenic
GATACAAGAAAAGAGAAAGA+GGG 0.596354 4_1:+74890446 Msa0572090:intron
GGATGTTCCTGTTGATCCTG+AGG 0.604068 4_1:+74890269 Msa0572090:CDS
AAATCCACAACAGGAAAGCA+AGG 0.604142 4_1:+74895913 Msa0572090:CDS
GACTTCAGCTGACAGGTAGT+CGG 0.607201 4_1:+74896641 Msa0572090:intron
AAAATCAGCGTCAATTCTGT+CGG 0.608748 4_1:+74889183 Msa0572090:five_prime_UTR
AAACATTTCCATTTCCATGG+AGG 0.610420 4_1:+74889087 Msa0572090:five_prime_UTR
AAACGAAACAGATGATGAGG+TGG 0.610509 4_1:+74896047 Msa0572090:CDS
TGGGTCGGATCGGATCGGGT+CGG 0.612211 4_1:-74889033 None:intergenic
AGAAAACGAAACAGATGATG+AGG 0.613423 4_1:+74896044 Msa0572090:CDS
CGACACCGACGTAATTGAGA+GGG 0.615159 4_1:-74889230 None:intergenic
TTGCTTCATGAGACGGAAAG+CGG 0.618335 4_1:-74889265 None:intergenic
TGAAATTGCTAAAAGTGGGA+TGG 0.620584 4_1:+74895627 Msa0572090:CDS
CACGGCTAAGGTGGAAACTG+AGG 0.628134 4_1:+74890242 Msa0572090:CDS
AAGAGTGACATATCTGAGGA+GGG 0.635272 4_1:+74891556 Msa0572090:CDS
GCGACACCGACGTAATTGAG+AGG 0.647025 4_1:-74889231 None:intergenic
GAGCTACTAGACCACAAGGA+AGG 0.652543 4_1:+74890307 Msa0572090:CDS
ATCAGCGTCAATTCTGTCGG+CGG 0.655373 4_1:+74889186 Msa0572090:five_prime_UTR
TTCTGTCGGCGGAACCATGG+CGG 0.656186 4_1:+74889197 Msa0572090:exon
GATATCCATCCAGAGTGGTG+GGG 0.670751 4_1:+74895535 Msa0572090:CDS
TCCAGAGCTACTAGACCACA+AGG 0.671642 4_1:+74890303 Msa0572090:CDS
GGCTAAGGTGGAAACTGAGG+TGG 0.671818 4_1:+74890245 Msa0572090:CDS
GACACCGACGTAATTGAGAG+GGG 0.693005 4_1:-74889229 None:intergenic
AAACGTACAGACCTTCCTTG+TGG 0.713884 4_1:-74890318 None:intergenic
GAAACCCCTCTCAATTACGT+CGG 0.716826 4_1:+74889225 Msa0572090:CDS
GTCCCGATATCCATCCAGAG+TGG 0.734846 4_1:+74895530 Msa0572090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATTAATAAATATT+TGG + chr4_1:74892181-74892200 Msa0572090:intron 0.0%
!! TAATTGATTAATAACTATAT+TGG - chr4_1:74892166-74892185 None:intergenic 10.0%
!! AATAAATATTTGGTATAATA+TGG + chr4_1:74892191-74892210 Msa0572090:intron 10.0%
!!! TTAATAATTAATTGGTTTAA+TGG + chr4_1:74892294-74892313 Msa0572090:intron 10.0%
!! CAAAATAAAAGTAAAAAAAA+AGG + chr4_1:74893192-74893211 Msa0572090:intron 10.0%
!! TACAAAATAAGAAAAAATTT+GGG - chr4_1:74893607-74893626 None:intergenic 10.0%
!!! ATTCATTTGTTTTGTTTTAA+GGG + chr4_1:74889362-74889381 Msa0572090:intron 15.0%
!!! TTGTTTGTTCAATTTTAAAT+AGG + chr4_1:74889889-74889908 Msa0572090:intron 15.0%
!!! AGTTTTTTTTTTTTTTAGAG+AGG - chr4_1:74890385-74890404 None:intergenic 15.0%
!!! AGTTTTTATGTTATTTGTAT+TGG + chr4_1:74891669-74891688 Msa0572090:intron 15.0%
!!! GTTTTTATGTTATTTGTATT+GGG + chr4_1:74891670-74891689 Msa0572090:intron 15.0%
!!! TCTCTTATAGTTTTTTTTTT+AGG + chr4_1:74891842-74891861 Msa0572090:intron 15.0%
!!! ACAAAAAAAAAAGCATTTTT+TGG + chr4_1:74892249-74892268 Msa0572090:intron 15.0%
!!! CAAAAAAAAAAGCATTTTTT+GGG + chr4_1:74892250-74892269 Msa0572090:intron 15.0%
!! ACAAAATAAGAAAAAATTTG+GGG - chr4_1:74893606-74893625 None:intergenic 15.0%
!! CTACAAAATAAGAAAAAATT+TGG - chr4_1:74893608-74893627 None:intergenic 15.0%
!!! ATTTTTTGGTTTTTTTGTTT+TGG - chr4_1:74894450-74894469 None:intergenic 15.0%
!!! ATTTTACATTGAAAAAGAAA+AGG + chr4_1:74895285-74895304 Msa0572090:intron 15.0%
!!! TTTTACATTGAAAAAGAAAA+GGG + chr4_1:74895286-74895305 Msa0572090:intron 15.0%
!!! ATTCAAATTTAAAATAGAAC+AGG - chr4_1:74896414-74896433 None:intergenic 15.0%
!!! TTGAAATTTTGATACATTTT+TGG + chr4_1:74896711-74896730 Msa0572090:exon 15.0%
!! AAATGTTGTAATATGTTTAA+TGG + chr4_1:74896876-74896895 Msa0572090:three_prime_UTR 15.0%
!!! ATATTCGATCCAATTTTAAT+GGG - chr4_1:74889004-74889023 None:intergenic 20.0%
!!! AATATTCGATCCAATTTTAA+TGG - chr4_1:74889005-74889024 None:intergenic 20.0%
!!! GATTCATTTGTTTTGTTTTA+AGG + chr4_1:74889361-74889380 Msa0572090:intron 20.0%
!! GATTAATGAAAAAAGAAGAA+AGG - chr4_1:74889475-74889494 None:intergenic 20.0%
!!! GTTCAATTTTAAATAGGTAT+TGG + chr4_1:74889895-74889914 Msa0572090:intron 20.0%
!! GAGAATTAATTAAGATAACA+AGG - chr4_1:74890021-74890040 None:intergenic 20.0%
!! TACAAAAAGAAATATTTCAG+TGG - chr4_1:74890069-74890088 None:intergenic 20.0%
!!! TGTTGATGAATATATTATGA+CGG + chr4_1:74890181-74890200 Msa0572090:intron 20.0%
!! AATGAATAGAACTATAGAAT+CGG - chr4_1:74890780-74890799 None:intergenic 20.0%
!! ATTGTTTACTTCTATAATGT+TGG + chr4_1:74891521-74891540 Msa0572090:intron 20.0%
!! ATAAGAGAAACTATTAAGAA+AGG - chr4_1:74891830-74891849 None:intergenic 20.0%
!! TAAGCAGTATACTATAAATT+TGG - chr4_1:74892034-74892053 None:intergenic 20.0%
!!! TACTGACTAAAAAAACATAT+TGG + chr4_1:74892096-74892115 Msa0572090:intron 20.0%
!! ACTGACTAAAAAAACATATT+GGG + chr4_1:74892097-74892116 Msa0572090:intron 20.0%
!! TTACTTGGTTTAAATATCTT+GGG - chr4_1:74892929-74892948 None:intergenic 20.0%
!!! CACTTAAGTTTTTATTGAAT+TGG - chr4_1:74893385-74893404 None:intergenic 20.0%
!! CAAAATAAGAAAAAATTTGG+GGG - chr4_1:74893605-74893624 None:intergenic 20.0%
!!! TTTGAACATGTTTCATTTTT+TGG - chr4_1:74894464-74894483 None:intergenic 20.0%
!! ACATTGCATTAAATCTAAAT+GGG + chr4_1:74895037-74895056 Msa0572090:intron 20.0%
!! ATGACCTTACAATTATATAA+AGG + chr4_1:74895773-74895792 Msa0572090:intron 20.0%
!! AATTAATTATTACACCATTC+AGG - chr4_1:74895868-74895887 None:intergenic 20.0%
!! ATATTGAAATTTGAATAGCA+TGG + chr4_1:74896375-74896394 Msa0572090:intron 20.0%
!! ATTGCATGATAAATATATTG+TGG + chr4_1:74896503-74896522 Msa0572090:intron 20.0%
!!! AAATTTTGATACATTTTTGG+CGG + chr4_1:74896714-74896733 Msa0572090:exon 20.0%
!!! TTTTCTTATTCATTTCATTC+TGG + chr4_1:74896738-74896757 Msa0572090:three_prime_UTR 20.0%
!!! ATTTGTTTTGTTTTAAGGGA+TGG + chr4_1:74889366-74889385 Msa0572090:intron 25.0%
!!! TTTGTTTTGTTTTAAGGGAT+GGG + chr4_1:74889367-74889386 Msa0572090:intron 25.0%
! TATAATGCTATGTTATGCTT+AGG + chr4_1:74889579-74889598 Msa0572090:intron 25.0%
! ATAATGCTATGTTATGCTTA+GGG + chr4_1:74889580-74889599 Msa0572090:intron 25.0%
!!! GCTATTTTCATAAGCTATAT+TGG - chr4_1:74889744-74889763 None:intergenic 25.0%
!!! GTTTTAAATAGAGAGTAACA+CGG + chr4_1:74890224-74890243 Msa0572090:intron 25.0%
! TCATACATAACATCTTTACA+TGG - chr4_1:74890643-74890662 None:intergenic 25.0%
! TATCTTTGTAATCTGTTTCA+TGG + chr4_1:74890677-74890696 Msa0572090:intron 25.0%
! TTCGTTAAACTTAACTGAAA+TGG + chr4_1:74891053-74891072 Msa0572090:intron 25.0%
! AGTGTCAATAGAATATAGTA+CGG - chr4_1:74891288-74891307 None:intergenic 25.0%
!!! TTTCAAGATTTTGAAGATGA+AGG + chr4_1:74891625-74891644 Msa0572090:CDS 25.0%
! CAGTATACTATAAATTTGGT+AGG - chr4_1:74892030-74892049 None:intergenic 25.0%
! ACTAAAAAAACATATTGGGA+AGG + chr4_1:74892101-74892120 Msa0572090:intron 25.0%
! TTTCACAAATTATTGCTTAG+TGG + chr4_1:74892124-74892143 Msa0572090:intron 25.0%
!!! AAAAAAAGCATTTTTTGGGA+AGG + chr4_1:74892254-74892273 Msa0572090:intron 25.0%
!!! CTAAAAAAACGCGTTTTTTT+GGG + chr4_1:74892346-74892365 Msa0572090:intron 25.0%
!!! TTTATAACGTTTTTTGAAGC+CGG + chr4_1:74892380-74892399 Msa0572090:intron 25.0%
! AAAATCATTGAATACAAGCA+AGG - chr4_1:74892869-74892888 None:intergenic 25.0%
! GTTACTTGGTTTAAATATCT+TGG - chr4_1:74892930-74892949 None:intergenic 25.0%
! TATTTAAACCAAGTAACTTG+TGG + chr4_1:74892933-74892952 Msa0572090:intron 25.0%
!!! TGGAATGTAATTTTAGCAAA+AGG - chr4_1:74893004-74893023 None:intergenic 25.0%
! AAAGTAAAAAAAAAGGGCTT+AGG + chr4_1:74893199-74893218 Msa0572090:intron 25.0%
! AAGTAAAAAAAAAGGGCTTA+GGG + chr4_1:74893200-74893219 Msa0572090:intron 25.0%
!! AGTTTTTATTGAATTGGAGA+AGG - chr4_1:74893379-74893398 None:intergenic 25.0%
! AGGAATTTGTAATCCTTAAT+TGG + chr4_1:74893783-74893802 Msa0572090:intron 25.0%
!!! TTCAAGTTGAAGGAATATAA+TGG - chr4_1:74893828-74893847 None:intergenic 25.0%
! AAAGAATGAAAAAGGATTCA+TGG - chr4_1:74893909-74893928 None:intergenic 25.0%
!!! GAAGGATACAATTTTAGTTT+TGG - chr4_1:74894215-74894234 None:intergenic 25.0%
! AATTGAAACATGTTCAACAT+TGG - chr4_1:74894277-74894296 None:intergenic 25.0%
! TAAAAAAACAAGTCAAGTGA+GGG + chr4_1:74894310-74894329 Msa0572090:intron 25.0%
! AAAAGAAAAAAAAGTCTCGT+GGG - chr4_1:74894426-74894445 None:intergenic 25.0%
! AAAAAGAAAAAAAAGTCTCG+TGG - chr4_1:74894427-74894446 None:intergenic 25.0%
! ATATACATTGCAAATCTCTT+TGG - chr4_1:74894623-74894642 None:intergenic 25.0%
! ATTTGCAATGTATATCAATG+AGG + chr4_1:74894628-74894647 Msa0572090:intron 25.0%
!!! TTCAAGTTGAAGGATTATAA+TGG + chr4_1:74894878-74894897 Msa0572090:intron 25.0%
! CGAATACGAAAAAAAAATTC+AGG - chr4_1:74894943-74894962 None:intergenic 25.0%
! CATTTAGATTTAATGCAATG+TGG - chr4_1:74895038-74895057 None:intergenic 25.0%
! CACATTGCATTAAATCTAAA+TGG + chr4_1:74895036-74895055 Msa0572090:intron 25.0%
! CATTGCATTAAATCTAAATG+GGG + chr4_1:74895038-74895057 Msa0572090:intron 25.0%
! ATTGCATTAAATCTAAATGG+GGG + chr4_1:74895039-74895058 Msa0572090:intron 25.0%
! GGCTAAAAAATCAAAAAAGT+GGG + chr4_1:74895061-74895080 Msa0572090:intron 25.0%
!! ATTCAAGAAGTACAAAAAGA+TGG - chr4_1:74895236-74895255 None:intergenic 25.0%
! GTTCTTTATAACCAATAACA+TGG + chr4_1:74895325-74895344 Msa0572090:intron 25.0%
! TCTTGATCTTGTTCAAAAAA+AGG - chr4_1:74895661-74895680 None:intergenic 25.0%
! CCATCCTTTATATAATTGTA+AGG - chr4_1:74895780-74895799 None:intergenic 25.0%
! CCTTACAATTATATAAAGGA+TGG + chr4_1:74895777-74895796 Msa0572090:intron 25.0%
! AGAACTAAATTTCAAGATAC+TGG - chr4_1:74895817-74895836 None:intergenic 25.0%
!! AATTTCTTCAGCTTCATTTT+GGG - chr4_1:74896108-74896127 None:intergenic 25.0%
! AAATATGCAACACAAGAAAT+AGG - chr4_1:74896159-74896178 None:intergenic 25.0%
! AAATAGAACAGGAAGAAATT+TGG - chr4_1:74896403-74896422 None:intergenic 25.0%
! ATTGATTGGAGTTAGTTATA+GGG + chr4_1:74896821-74896840 Msa0572090:three_prime_UTR 25.0%
! TTTCAATATCTTAAAACCAG+TGG - chr4_1:74896979-74896998 None:intergenic 25.0%
!!! CTGGTTTTAAGATATTGAAA+TGG + chr4_1:74896979-74896998 Msa0572090:three_prime_UTR 25.0%
TCAAAACATTTCCATTTCCA+TGG + chr4_1:74889084-74889103 Msa0572090:five_prime_UTR 30.0%
AGTCTCTAATGTTACTGTTA+GGG - chr4_1:74889117-74889136 None:intergenic 30.0%
TAGTCTCTAATGTTACTGTT+AGG - chr4_1:74889118-74889137 None:intergenic 30.0%
AAAGAAAAACAAGGGATCAA+AGG + chr4_1:74889410-74889429 Msa0572090:CDS 30.0%
CAAATTAAGCTGTTTATCCA+AGG + chr4_1:74889857-74889876 Msa0572090:intron 30.0%
GAGTATGTTATCAAATTGTG+TGG - chr4_1:74889953-74889972 None:intergenic 30.0%
AAGGTAAGAAATGAAAAGAG+AGG - chr4_1:74890002-74890021 None:intergenic 30.0%
AGATACAAGAAAAGAGAAAG+AGG + chr4_1:74890445-74890464 Msa0572090:intron 30.0%
GATACAAGAAAAGAGAAAGA+GGG + chr4_1:74890446-74890465 Msa0572090:intron 30.0%
GTTAGAATGCACATATTAAC+AGG - chr4_1:74890811-74890830 None:intergenic 30.0%
TAATATGTGCATTCTAACTG+TGG + chr4_1:74890813-74890832 Msa0572090:intron 30.0%
AATGACCATGTATATGTTCT+GGG - chr4_1:74890899-74890918 None:intergenic 30.0%
TAATGACCATGTATATGTTC+TGG - chr4_1:74890900-74890919 None:intergenic 30.0%
AAGCCATATTTACACTTGAT+GGG + chr4_1:74890931-74890950 Msa0572090:intron 30.0%
AAACCCATCAAGTGTAAATA+TGG - chr4_1:74890937-74890956 None:intergenic 30.0%
AGTTAAGTTTAACGAAACGA+AGG - chr4_1:74891049-74891068 None:intergenic 30.0%
GATCTAGTAAATGTATGGTA+AGG - chr4_1:74891237-74891256 None:intergenic 30.0%
AGAGGTTTGAGTCATTAAAT+CGG - chr4_1:74891260-74891279 None:intergenic 30.0%
GTGTCAATAGAATATAGTAC+GGG - chr4_1:74891287-74891306 None:intergenic 30.0%
AATCACAAAGAAAGAAGTCT+TGG - chr4_1:74891332-74891351 None:intergenic 30.0%
ACTTCTATAATGTTGGTCAT+AGG + chr4_1:74891528-74891547 Msa0572090:intron 30.0%
AAAAAAGAGTGACATATCTG+AGG + chr4_1:74891552-74891571 Msa0572090:CDS 30.0%
TCTTCAAAATCTTGAAAGTC+AGG - chr4_1:74891622-74891641 None:intergenic 30.0%
! GAATGGGTTCAATCAAAATA+TGG - chr4_1:74891798-74891817 None:intergenic 30.0%
AGAAAGGTTTAGAGATGAAT+GGG - chr4_1:74891814-74891833 None:intergenic 30.0%
AAGAAAGGTTTAGAGATGAA+TGG - chr4_1:74891815-74891834 None:intergenic 30.0%
!!! TTTTTAGCTGTCACATGAAA+CGG - chr4_1:74892333-74892352 None:intergenic 30.0%
!!! GCTAAAAAAACGCGTTTTTT+TGG + chr4_1:74892345-74892364 Msa0572090:intron 30.0%
!!! TTATAACGTTTTTTGAAGCC+GGG + chr4_1:74892381-74892400 Msa0572090:intron 30.0%
CGAGAATAAAAGAAACATAG+CGG - chr4_1:74892713-74892732 None:intergenic 30.0%
! TGTTTCTTTTATTCTCGTGT+TGG + chr4_1:74892716-74892735 Msa0572090:intron 30.0%
ATATCATACCACAAGTTACT+TGG - chr4_1:74892944-74892963 None:intergenic 30.0%
ATTTCTAACTTAGAGGTGAA+AGG - chr4_1:74892975-74892994 None:intergenic 30.0%
! TTAAATGGGAGTATAAGACT+TGG - chr4_1:74893082-74893101 None:intergenic 30.0%
TCTACAAAAAACACACATCT+CGG + chr4_1:74893136-74893155 Msa0572090:intron 30.0%
TAACAATATGATTGTACCGA+GGG - chr4_1:74893230-74893249 None:intergenic 30.0%
ATAACAATATGATTGTACCG+AGG - chr4_1:74893231-74893250 None:intergenic 30.0%
TCGGTACAATCATATTGTTA+TGG + chr4_1:74893230-74893249 Msa0572090:intron 30.0%
CGGTACAATCATATTGTTAT+GGG + chr4_1:74893231-74893250 Msa0572090:intron 30.0%
TTGTTATGGGAAAATCATCA+TGG + chr4_1:74893244-74893263 Msa0572090:intron 30.0%
ATCCTTGACTACTCAAATAT+AGG + chr4_1:74893309-74893328 Msa0572090:intron 30.0%
AAGAAAAGACACTAGAGTTA+CGG - chr4_1:74893464-74893483 None:intergenic 30.0%
TTTGCGAAAGAGTGATTAAA+TGG - chr4_1:74893492-74893511 None:intergenic 30.0%
TTTAATCACTCTTTCGCAAA+AGG + chr4_1:74893492-74893511 Msa0572090:intron 30.0%
ACTTCATCAACATGTTCATA+GGG + chr4_1:74893549-74893568 Msa0572090:intron 30.0%
TTTAAAGACAGCATGTTCAT+AGG + chr4_1:74893630-74893649 Msa0572090:intron 30.0%
TTAAAGACAGCATGTTCATA+GGG + chr4_1:74893631-74893650 Msa0572090:intron 30.0%
AATTATCCACTCTAACCAAT+AGG - chr4_1:74893684-74893703 None:intergenic 30.0%
CTTCCATCAGTATATTTATC+CGG + chr4_1:74893997-74894016 Msa0572090:intron 30.0%
CGGATAAATATATAGATGAG+GGG - chr4_1:74894072-74894091 None:intergenic 30.0%
CCGGATAAATATATAGATGA+GGG - chr4_1:74894073-74894092 None:intergenic 30.0%
CCCTCATCTATATATTTATC+CGG + chr4_1:74894070-74894089 Msa0572090:intron 30.0%
TCCGGATAAATATATAGATG+AGG - chr4_1:74894074-74894093 None:intergenic 30.0%
AATCTTGAGCTGCTTATTAA+AGG + chr4_1:74894243-74894262 Msa0572090:intron 30.0%
AAACATGTTCAACATTGGAA+AGG - chr4_1:74894272-74894291 None:intergenic 30.0%
GTAAAAAAACAAGTCAAGTG+AGG + chr4_1:74894309-74894328 Msa0572090:intron 30.0%
! CAACTTTTTGAATCTTGAGA+TGG - chr4_1:74894512-74894531 None:intergenic 30.0%
CTCAAGATTCAAAAAGTTGA+AGG + chr4_1:74894513-74894532 Msa0572090:intron 30.0%
!! AAATCTCTTTGGAATGGATT+TGG - chr4_1:74894612-74894631 None:intergenic 30.0%
! TTCAGAGAAGTATATAGATG+AGG + chr4_1:74894674-74894693 Msa0572090:intron 30.0%
! TCAGAGAAGTATATAGATGA+GGG + chr4_1:74894675-74894694 Msa0572090:intron 30.0%
TTAGTATCTTCAACTTCAGA+AGG - chr4_1:74894711-74894730 None:intergenic 30.0%
! AACAACATTTTACCATGTGA+AGG - chr4_1:74894966-74894985 None:intergenic 30.0%
ATATATCCACTGTAACCAAT+AGG + chr4_1:74895006-74895025 Msa0572090:intron 30.0%
TTGCATTAAATCTAAATGGG+GGG + chr4_1:74895040-74895059 Msa0572090:intron 30.0%
GGGCTAAAAAATCAAAAAAG+TGG + chr4_1:74895060-74895079 Msa0572090:intron 30.0%
ATCAAAAAAGTGGGTAAATG+TGG + chr4_1:74895070-74895089 Msa0572090:intron 30.0%
TCAAAAAAGTGGGTAAATGT+GGG + chr4_1:74895071-74895090 Msa0572090:intron 30.0%
! GTTTCTCAATTGAGTGATTT+TGG - chr4_1:74895129-74895148 None:intergenic 30.0%
ACTCAATTGAGAAACTATGA+GGG + chr4_1:74895134-74895153 Msa0572090:intron 30.0%
AATCGCTCAATTGAAACTAT+GGG + chr4_1:74895161-74895180 Msa0572090:intron 30.0%
AAAAAGAAAAGGGTCATTTG+AGG + chr4_1:74895296-74895315 Msa0572090:intron 30.0%
! GATCAGTTTTTCCATGTTAT+TGG - chr4_1:74895339-74895358 None:intergenic 30.0%
AATAATCACAGAAATGCCAA+TGG - chr4_1:74895449-74895468 None:intergenic 30.0%
AATGCAATATAGACTGATTG+AGG - chr4_1:74895494-74895513 None:intergenic 30.0%
AGTCTATATTGCATTGTTAC+AGG + chr4_1:74895499-74895518 Msa0572090:intron 30.0%
TTTAGCAATTTCAGATGTAG+AGG - chr4_1:74895620-74895639 None:intergenic 30.0%
! ACATCTGAAATTGCTAAAAG+TGG + chr4_1:74895622-74895641 Msa0572090:CDS 30.0%
! CATCTGAAATTGCTAAAAGT+GGG + chr4_1:74895623-74895642 Msa0572090:CDS 30.0%
ATACTTGGACTAAATTGTAG+AGG - chr4_1:74895687-74895706 None:intergenic 30.0%
! GTTTCATTTTCTAACCTGAA+TGG + chr4_1:74895851-74895870 Msa0572090:intron 30.0%
! CAATTTCTTCAGCTTCATTT+TGG - chr4_1:74896109-74896128 None:intergenic 30.0%
CAATCATGATTTCACTATCA+AGG - chr4_1:74896186-74896205 None:intergenic 30.0%
! TGATTAGTCACTTTATGTAC+AGG + chr4_1:74896204-74896223 Msa0572090:intron 30.0%
! CCTTTTACATAGCTTCAAAA+AGG - chr4_1:74896464-74896483 None:intergenic 30.0%
!!! CCTTTTTGAAGCTATGTAAA+AGG + chr4_1:74896461-74896480 Msa0572090:intron 30.0%
TCATGCAATGCAAGTTAAAA+AGG - chr4_1:74896492-74896511 None:intergenic 30.0%
TCTTATTCATTTCATTCTGG+AGG + chr4_1:74896741-74896760 Msa0572090:three_prime_UTR 30.0%
! CATTGATTGGAGTTAGTTAT+AGG + chr4_1:74896820-74896839 Msa0572090:three_prime_UTR 30.0%
!!! TCCAATTTTAATGGGCTATC+CGG - chr4_1:74888996-74889015 None:intergenic 35.0%
AAACATTTCCATTTCCATGG+AGG + chr4_1:74889087-74889106 Msa0572090:five_prime_UTR 35.0%
AAAATCAGCGTCAATTCTGT+CGG + chr4_1:74889183-74889202 Msa0572090:five_prime_UTR 35.0%
AAAGTAACGATAGAGAGAGA+GGG - chr4_1:74889306-74889325 None:intergenic 35.0%
AAAAGTAACGATAGAGAGAG+AGG - chr4_1:74889307-74889326 None:intergenic 35.0%
GTCTTGGCAAAGAAAAACAA+GGG + chr4_1:74889402-74889421 Msa0572090:CDS 35.0%
TCAGTATTTGTGAGACTGTT+TGG + chr4_1:74889653-74889672 Msa0572090:intron 35.0%
CAGTATTTGTGAGACTGTTT+GGG + chr4_1:74889654-74889673 Msa0572090:intron 35.0%
ATTAGAGAAGCCAAACCAAT+GGG + chr4_1:74889918-74889937 Msa0572090:intron 35.0%
TGATGTTATACCTGTGTCAT+TGG - chr4_1:74890123-74890142 None:intergenic 35.0%
AGCAGAACAGTACAAAATTC+TGG - chr4_1:74890160-74890179 None:intergenic 35.0%
TATTCCTCAAAGGATCTTGA+AGG + chr4_1:74890484-74890503 Msa0572090:CDS 35.0%
AATTCCTTCAAGATCCTTTG+AGG - chr4_1:74890491-74890510 None:intergenic 35.0%
!! TCTTTAAGATGTCCAGTGAA+TGG - chr4_1:74890539-74890558 None:intergenic 35.0%
GTTAGAGGCTTATTTGGATT+TGG - chr4_1:74890717-74890736 None:intergenic 35.0%
ATTTCGGTTAGAGGCTTATT+TGG - chr4_1:74890723-74890742 None:intergenic 35.0%
CAATGCATCTTCCACAATTT+CGG - chr4_1:74890739-74890758 None:intergenic 35.0%
TAACACCCAGAACATATACA+TGG + chr4_1:74890891-74890910 Msa0572090:intron 35.0%
GAAGCCATATTTACACTTGA+TGG + chr4_1:74890930-74890949 Msa0572090:intron 35.0%
CATGTGTGTTGCAATTCATA+AGG + chr4_1:74890983-74891002 Msa0572090:intron 35.0%
!! TACTTTGAGATTGCAATCTC+TGG - chr4_1:74891086-74891105 None:intergenic 35.0%
ATCGGGATCTAGTAAATGTA+TGG - chr4_1:74891242-74891261 None:intergenic 35.0%
GAGGTTTGAGTCATTAAATC+GGG - chr4_1:74891259-74891278 None:intergenic 35.0%
TAACATGCAGTTAAGAAGCT+TGG - chr4_1:74891466-74891485 None:intergenic 35.0%
! TGACAATGCTGATGATGAAT+TGG + chr4_1:74891582-74891601 Msa0572090:CDS 35.0%
! GGATTTTGTAGTTAAGAGAG+TGG - chr4_1:74891899-74891918 None:intergenic 35.0%
GTTTGGACATGTAAAATCTG+TGG - chr4_1:74891920-74891939 None:intergenic 35.0%
! GATTTTACATGTCCAAACCA+AGG + chr4_1:74891922-74891941 Msa0572090:intron 35.0%
ATCTGTTTCATTCATGTGAC+AGG + chr4_1:74892223-74892242 Msa0572090:intron 35.0%
! TTCTTGAAATTCTGGGTTAG+CGG - chr4_1:74892420-74892439 None:intergenic 35.0%
GATCGTCTTCTTGAAATTCT+GGG - chr4_1:74892427-74892446 None:intergenic 35.0%
CAGAATTTCAAGAAGACGAT+CGG + chr4_1:74892426-74892445 Msa0572090:intron 35.0%
GACTCGTAAAAACTAGGTTT+AGG - chr4_1:74892565-74892584 None:intergenic 35.0%
! CGATTTGACTCGTAAAAACT+AGG - chr4_1:74892571-74892590 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACA+AGG - chr4_1:74892627-74892646 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr4_1:74892631-74892650 Msa0572090:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr4_1:74892635-74892654 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr4_1:74892638-74892657 None:intergenic 35.0%
! TAACGCTTGAAGATTAGTTG+GGG - chr4_1:74892662-74892681 None:intergenic 35.0%
! GTAACGCTTGAAGATTAGTT+GGG - chr4_1:74892663-74892682 None:intergenic 35.0%
TGTAACGCTTGAAGATTAGT+TGG - chr4_1:74892664-74892683 None:intergenic 35.0%
TAAGACCGACAATGTTGTAT+GGG - chr4_1:74892764-74892783 None:intergenic 35.0%
TTAAGACCGACAATGTTGTA+TGG - chr4_1:74892765-74892784 None:intergenic 35.0%
TACAAGCAAGGTTGTTGAAA+TGG - chr4_1:74892857-74892876 None:intergenic 35.0%
TAGAGGCAAGACAAAGTATA+TGG - chr4_1:74893024-74893043 None:intergenic 35.0%
GAGTCGAGAGAGAATTAAAT+GGG - chr4_1:74893096-74893115 None:intergenic 35.0%
AGAGTCGAGAGAGAATTAAA+TGG - chr4_1:74893097-74893116 None:intergenic 35.0%
TAGTCAAGGATATGTATGAG+GGG - chr4_1:74893300-74893319 None:intergenic 35.0%
GTAGTCAAGGATATGTATGA+GGG - chr4_1:74893301-74893320 None:intergenic 35.0%
AGTAGTCAAGGATATGTATG+AGG - chr4_1:74893302-74893321 None:intergenic 35.0%
TGCCTATATTTGAGTAGTCA+AGG - chr4_1:74893314-74893333 None:intergenic 35.0%
AGATGTTGTGGAAAGGATTT+AGG - chr4_1:74893339-74893358 None:intergenic 35.0%
AAATCCTTTCCACAACATCT+AGG + chr4_1:74893339-74893358 Msa0572090:intron 35.0%
TCCTAGGCATAAAACCAAAT+TGG + chr4_1:74893434-74893453 Msa0572090:intron 35.0%
!!! ACCAATTTGGTTTTATGCCT+AGG - chr4_1:74893438-74893457 None:intergenic 35.0%
GACTTCATCAACATGTTCAT+AGG + chr4_1:74893548-74893567 Msa0572090:intron 35.0%
AAGAAAAAATTTGGGGGTGA+GGG - chr4_1:74893599-74893618 None:intergenic 35.0%
TAAGAAAAAATTTGGGGGTG+AGG - chr4_1:74893600-74893619 None:intergenic 35.0%
TGCAACAGTTTCATTCCTAT+TGG + chr4_1:74893666-74893685 Msa0572090:intron 35.0%
! TTCATTCCTATTGGTTAGAG+TGG + chr4_1:74893675-74893694 Msa0572090:intron 35.0%
AACAAAACATTTGACCAAGC+CGG + chr4_1:74893737-74893756 Msa0572090:intron 35.0%
ATACGCATGCATAAGAATTC+AGG + chr4_1:74893763-74893782 Msa0572090:intron 35.0%
CATTGAGGTTAAGCCAATTA+AGG - chr4_1:74893799-74893818 None:intergenic 35.0%
!! CAAAGTGATGTTCAAGTTGA+AGG - chr4_1:74894868-74894887 None:intergenic 35.0%
TCGACGACAAAGAATGAAAA+AGG - chr4_1:74893917-74893936 None:intergenic 35.0%
CATCCGGATAAATATACTGA+TGG - chr4_1:74894003-74894022 None:intergenic 35.0%
TTGTCTATCAATGAGACTGA+TGG - chr4_1:74894113-74894132 None:intergenic 35.0%
TTAACGAAGGCAAAGAAGTA+TGG - chr4_1:74894184-74894203 None:intergenic 35.0%
TTTGGATGAACTGTTAACGA+AGG - chr4_1:74894197-74894216 None:intergenic 35.0%
! CATTGCAAATCTCTTTGGAA+TGG - chr4_1:74894618-74894637 None:intergenic 35.0%
! CAGAGAAGTATATAGATGAG+GGG + chr4_1:74894676-74894695 Msa0572090:intron 35.0%
AAAGAATGCAAAGGAACTGT+GGG + chr4_1:74894800-74894819 Msa0572090:intron 35.0%
!! CAAAGTGATGTTCAAGTTGA+AGG + chr4_1:74894868-74894887 Msa0572090:intron 35.0%
ATTATAATGGTGCACACGTT+GGG + chr4_1:74894891-74894910 Msa0572090:intron 35.0%
CAAAAAAGTGGGTAAATGTG+GGG + chr4_1:74895072-74895091 Msa0572090:intron 35.0%
AAAAAAGTGGGTAAATGTGG+GGG + chr4_1:74895073-74895092 Msa0572090:intron 35.0%
AATTGCTCAACTGAAACTAG+AGG + chr4_1:74895101-74895120 Msa0572090:intron 35.0%
ATTGCTCAACTGAAACTAGA+GGG + chr4_1:74895102-74895121 Msa0572090:intron 35.0%
CACTCAATTGAGAAACTATG+AGG + chr4_1:74895133-74895152 Msa0572090:intron 35.0%
GAATCGCTCAATTGAAACTA+TGG + chr4_1:74895160-74895179 Msa0572090:intron 35.0%
ATCGCTCAATTGAAACTATG+GGG + chr4_1:74895162-74895181 Msa0572090:intron 35.0%
TTCTTGAATTTCCCTTGTTG+TGG + chr4_1:74895247-74895266 Msa0572090:intron 35.0%
! TCTTGAATTTCCCTTGTTGT+GGG + chr4_1:74895248-74895267 Msa0572090:intron 35.0%
! AATAAGTTTGGGTTTGTCTC+TGG + chr4_1:74895559-74895578 Msa0572090:CDS 35.0%
TGAAATTGCTAAAAGTGGGA+TGG + chr4_1:74895627-74895646 Msa0572090:CDS 35.0%
! AAGTTTGAAAGGCACATACT+TGG - chr4_1:74895702-74895721 None:intergenic 35.0%
AAGTATGTGCCTTTCAAACT+TGG + chr4_1:74895701-74895720 Msa0572090:intron 35.0%
CAGCATATACCAAGTTTGAA+AGG - chr4_1:74895713-74895732 None:intergenic 35.0%
TCAAGATACTGGTAGAACAT+CGG - chr4_1:74895806-74895825 None:intergenic 35.0%
TATCCTGGAATAGCAATCAA+CGG - chr4_1:74895894-74895913 None:intergenic 35.0%
CAGGGTAAAAAGACATCATT+TGG + chr4_1:74895982-74896001 Msa0572090:CDS 35.0%
AGAAAACGAAACAGATGATG+AGG + chr4_1:74896044-74896063 Msa0572090:CDS 35.0%
! AGCAGATTTTAAACCAAGTG+AGG + chr4_1:74896133-74896152 Msa0572090:intron 35.0%
TTCAGTTTCAATGATTCTCC+AGG - chr4_1:74896232-74896251 None:intergenic 35.0%
! TGACTTGTCTTCGAAAAAAG+AGG + chr4_1:74896297-74896316 Msa0572090:CDS 35.0%
! TGTTGCTTACTTGAAGCAAA+AGG + chr4_1:74896321-74896340 Msa0572090:CDS 35.0%
CTTACTTGAAGCAAAAGGTA+TGG + chr4_1:74896326-74896345 Msa0572090:intron 35.0%
AAACATGTCAGTGTAGAAGA+TGG - chr4_1:74896613-74896632 None:intergenic 35.0%
! TCTTCTACACTGACATGTTT+TGG + chr4_1:74896613-74896632 Msa0572090:intron 35.0%
! AGTCGGAATTTTTGTATCGA+AGG + chr4_1:74896658-74896677 Msa0572090:CDS 35.0%
! GTCGGAATTTTTGTATCGAA+GGG + chr4_1:74896659-74896678 Msa0572090:CDS 35.0%
! TCATTCTGGAGGAAGAAAAA+AGG + chr4_1:74896752-74896771 Msa0572090:three_prime_UTR 35.0%
! CATTCTGGAGGAAGAAAAAA+GGG + chr4_1:74896753-74896772 Msa0572090:three_prime_UTR 35.0%
! AAAAAAGGGTTGAGGTGTTT+GGG + chr4_1:74896767-74896786 Msa0572090:three_prime_UTR 35.0%
! GAAGTGTAGATTGCATTGAT+TGG + chr4_1:74896807-74896826 Msa0572090:three_prime_UTR 35.0%
TTAAAGCGTGTATTGTCAGT+AGG + chr4_1:74897031-74897050 Msa0572090:three_prime_UTR 35.0%
ACCGGATAGCCCATTAAAAT+TGG + chr4_1:74888992-74889011 Msa0572090:five_prime_UTR 40.0%
!!! GTTTTGAAAGCGATGCTACT+TGG - chr4_1:74889071-74889090 None:intergenic 40.0%
TTTCCGTCTCATGAAGCAAA+TGG + chr4_1:74889269-74889288 Msa0572090:CDS 40.0%
GAACCATTTGCTTCATGAGA+CGG - chr4_1:74889275-74889294 None:intergenic 40.0%
!!! GTTTTGTTTTAAGGGATGGG+AGG + chr4_1:74889370-74889389 Msa0572090:intron 40.0%
GGTCTTGGCAAAGAAAAACA+AGG + chr4_1:74889401-74889420 Msa0572090:CDS 40.0%
ACCAACAAACAAGACACTAC+TGG + chr4_1:74889446-74889465 Msa0572090:CDS 40.0%
!! ACCAGTAGTGTCTTGTTTGT+TGG - chr4_1:74889450-74889469 None:intergenic 40.0%
CAGTCTCACAAATACTGACA+TGG - chr4_1:74889651-74889670 None:intergenic 40.0%
ACAAACAAACTCAGACTCCT+TGG - chr4_1:74889877-74889896 None:intergenic 40.0%
GATTAGAGAAGCCAAACCAA+TGG + chr4_1:74889917-74889936 Msa0572090:intron 40.0%
! ATACCTGTGTCATTGGATAC+TGG - chr4_1:74890116-74890135 None:intergenic 40.0%
! CAAAATTCTGGAGATCTCAG+AGG - chr4_1:74890148-74890167 None:intergenic 40.0%
AATAGAGAGTAACACGGCTA+AGG + chr4_1:74890230-74890249 Msa0572090:intron 40.0%
CGTCTCTCATTATTCCTCAA+AGG + chr4_1:74890474-74890493 Msa0572090:CDS 40.0%
TAAGCCTCTAACCGAAATTG+TGG + chr4_1:74890725-74890744 Msa0572090:intron 40.0%
TCTTCCACAATTTCGGTTAG+AGG - chr4_1:74890732-74890751 None:intergenic 40.0%
GATGCATTGTGCTCTGATAT+TGG + chr4_1:74890750-74890769 Msa0572090:intron 40.0%
!! TCTGGGTGTTATTCCAGATT+CGG - chr4_1:74890882-74890901 None:intergenic 40.0%
!! CTTTAAAATCAGCTGCTCCA+TGG + chr4_1:74891116-74891135 Msa0572090:intron 40.0%
! GATAGGTCCAACCTTTTCAA+GGG - chr4_1:74891195-74891214 None:intergenic 40.0%
GAATATAGTACGGGTTTGAG+AGG - chr4_1:74891278-74891297 None:intergenic 40.0%
AAAGAGTGACATATCTGAGG+AGG + chr4_1:74891555-74891574 Msa0572090:CDS 40.0%
AAGAGTGACATATCTGAGGA+GGG + chr4_1:74891556-74891575 Msa0572090:CDS 40.0%
! CAAGCCTTATCCCATTAAGT+GGG + chr4_1:74891725-74891744 Msa0572090:intron 40.0%
TGTAGTTAAGAGAGTGGATG+TGG - chr4_1:74891893-74891912 None:intergenic 40.0%
! CGATTTTGTCTACCTTGGTT+TGG - chr4_1:74891937-74891956 None:intergenic 40.0%
! GATCTCGATTTTGTCTACCT+TGG - chr4_1:74891942-74891961 None:intergenic 40.0%
ATCGAGATCCTAGACAAGAT+CGG + chr4_1:74891953-74891972 Msa0572090:intron 40.0%
!! TCTTGAAATTCTGGGTTAGC+GGG - chr4_1:74892419-74892438 None:intergenic 40.0%
CGATCGTCTTCTTGAAATTC+TGG - chr4_1:74892428-74892447 None:intergenic 40.0%
TTCAAGAAGACGATCGGAAA+CGG + chr4_1:74892432-74892451 Msa0572090:intron 40.0%
GTATGGAATCGGAAATTGGT+GGG - chr4_1:74892510-74892529 None:intergenic 40.0%
TTGGGTATGGAATCGGAAAT+TGG - chr4_1:74892514-74892533 None:intergenic 40.0%
TGCTTGATTGGGTATGGAAT+CGG - chr4_1:74892521-74892540 None:intergenic 40.0%
! AATCGCGATTTTGTCTACCA+TGG + chr4_1:74892586-74892605 Msa0572090:intron 40.0%
GAAACAAGGTTTAGGTGGTT+TGG - chr4_1:74892613-74892632 None:intergenic 40.0%
!! AGATGGTGGAAACAAGGTTT+AGG - chr4_1:74892621-74892640 None:intergenic 40.0%
! AAAGAAACATAGCGGAGATG+AGG - chr4_1:74892705-74892724 None:intergenic 40.0%
GGTTGAAGGGAACACTTTAT+CGG - chr4_1:74892794-74892813 None:intergenic 40.0%
! TAAGTACCACACTGGTTGAA+GGG - chr4_1:74892807-74892826 None:intergenic 40.0%
AAGCAAGGTTGTTGAAATGG+AGG - chr4_1:74892854-74892873 None:intergenic 40.0%
! GCGAAGCATTTCTAACTTAG+AGG - chr4_1:74892982-74893001 None:intergenic 40.0%
GCGGAAGCAATATGCTTATA+AGG + chr4_1:74893049-74893068 Msa0572090:intron 40.0%
AGTCAAGGATATGTATGAGG+GGG - chr4_1:74893299-74893318 None:intergenic 40.0%
TTATGCCTAGGAAGCAACAT+TGG - chr4_1:74893426-74893445 None:intergenic 40.0%
AGAGTTACGGCTAACCAATT+TGG - chr4_1:74893451-74893470 None:intergenic 40.0%
AGAAAAAATTTGGGGGTGAG+GGG - chr4_1:74893598-74893617 None:intergenic 40.0%
ATATAATGGCGCACACATTG+AGG - chr4_1:74893814-74893833 None:intergenic 40.0%
TGCTCCAAGATTCATCTTGT+CGG + chr4_1:74893861-74893880 Msa0572090:intron 40.0%
CAATGAGACTGATGGAAAAG+CGG - chr4_1:74894105-74894124 None:intergenic 40.0%
GATAGACAATGCAAGCTCTT+TGG + chr4_1:74893980-74893999 Msa0572090:intron 40.0%
! ACAATGCAAGCTCTTTGGAA+TGG + chr4_1:74894129-74894148 Msa0572090:intron 40.0%
GCTCAAGATTCAGAAGTTGA+AGG - chr4_1:74894233-74894252 None:intergenic 40.0%
CCTGCATTAACAGTTCTTCA+CGG - chr4_1:74894553-74894572 None:intergenic 40.0%
TTAATGCAGGCAAAGAAGCA+GGG + chr4_1:74894563-74894582 Msa0572090:intron 40.0%
!! TCTCTTTGGAATGGATTTGG+TGG - chr4_1:74894609-74894628 None:intergenic 40.0%
TCTTCAACTTCAGAAGGAGT+AGG - chr4_1:74894705-74894724 None:intergenic 40.0%
CTGCATCTGTTGTGTTAACT+CGG + chr4_1:74894773-74894792 Msa0572090:intron 40.0%
CAAAGAATGCAAAGGAACTG+TGG + chr4_1:74894799-74894818 Msa0572090:intron 40.0%
CACATGTTTCATGTTGTGAC+CGG + chr4_1:74894823-74894842 Msa0572090:intron 40.0%
GATTATAATGGTGCACACGT+TGG + chr4_1:74894890-74894909 Msa0572090:intron 40.0%
TTATAATGGTGCACACGTTG+GGG + chr4_1:74894892-74894911 Msa0572090:intron 40.0%
CGTTGGGGTTAAAACAGTTA+AGG + chr4_1:74894907-74894926 Msa0572090:intron 40.0%
! TTTTCGTATTCGCCTTCACA+TGG + chr4_1:74894951-74894970 Msa0572090:intron 40.0%
! TTCGTTCCTATTGGTTACAG+TGG - chr4_1:74895015-74895034 None:intergenic 40.0%
AAAAAGTGGGTAAATGTGGG+GGG + chr4_1:74895074-74895093 Msa0572090:intron 40.0%
TTGCTCAACTGAAACTAGAG+GGG + chr4_1:74895103-74895122 Msa0572090:intron 40.0%
!! CTCTAAAATGCCACCATTTG+TGG + chr4_1:74895367-74895386 Msa0572090:intron 40.0%
! TTTTTCTTACAACACCCTGC+AGG - chr4_1:74895403-74895422 None:intergenic 40.0%
TTCCAGGATAAATCCACAAC+AGG + chr4_1:74895904-74895923 Msa0572090:intron 40.0%
TTCCTGTTGTGGATTTATCC+TGG - chr4_1:74895909-74895928 None:intergenic 40.0%
AAATCCACAACAGGAAAGCA+AGG + chr4_1:74895913-74895932 Msa0572090:CDS 40.0%
AAAGCAAGGTCTAGGTATCA+AGG + chr4_1:74895927-74895946 Msa0572090:CDS 40.0%
! ATAGCATCCAGCTACTTTCT+TGG - chr4_1:74895959-74895978 None:intergenic 40.0%
!!! AGTAGCTGGATGCTATTTTC+AGG + chr4_1:74895963-74895982 Msa0572090:CDS 40.0%
!!! GTAGCTGGATGCTATTTTCA+GGG + chr4_1:74895964-74895983 Msa0572090:CDS 40.0%
AAACGAAACAGATGATGAGG+TGG + chr4_1:74896047-74896066 Msa0572090:CDS 40.0%
AACAGATGATGAGGTGGAAA+TGG + chr4_1:74896053-74896072 Msa0572090:CDS 40.0%
! GAAAAAAGGGTTGAGGTGTT+TGG + chr4_1:74896766-74896785 Msa0572090:three_prime_UTR 40.0%
ATGCAATCTACACTTCGAAC+AGG - chr4_1:74896803-74896822 None:intergenic 40.0%
TACTTGGTTGCGGTTGAGTT+GGG - chr4_1:74889055-74889074 None:intergenic 45.0%
! AAAGCGATGCTACTTGGTTG+CGG - chr4_1:74889065-74889084 None:intergenic 45.0%
! AGGGTTTTCCTCCATGGAAA+TGG - chr4_1:74889098-74889117 None:intergenic 45.0%
! ACTGTTAGGGTTTTCCTCCA+TGG - chr4_1:74889104-74889123 None:intergenic 45.0%
ACGTAATTGAGAGGGGTTTC+AGG - chr4_1:74889225-74889244 None:intergenic 45.0%
GAAACCCCTCTCAATTACGT+CGG + chr4_1:74889225-74889244 Msa0572090:CDS 45.0%
TTGCTTCATGAGACGGAAAG+CGG - chr4_1:74889268-74889287 None:intergenic 45.0%
!!! TGTTTTAAGGGATGGGAGGA+AGG + chr4_1:74889374-74889393 Msa0572090:intron 45.0%
! GTGTCAAATGCCCATTGGTT+TGG - chr4_1:74889931-74889950 None:intergenic 45.0%
AAACGTACAGACCTTCCTTG+TGG - chr4_1:74890321-74890340 None:intergenic 45.0%
! GTGAATGGTGTGTCTGAAGT+TGG - chr4_1:74890524-74890543 None:intergenic 45.0%
ACTTCAGACACACCATTCAC+TGG + chr4_1:74890524-74890543 Msa0572090:intron 45.0%
!! AAAAAAAAACCGGTGCTGCG+CGG + chr4_1:74890606-74890625 Msa0572090:intron 45.0%
TGTAATCTGTTTCATGGCCC+TGG + chr4_1:74890683-74890702 Msa0572090:intron 45.0%
TGGATTTGGCAAATCGTCCA+GGG - chr4_1:74890703-74890722 None:intergenic 45.0%
TTGGATTTGGCAAATCGTCC+AGG - chr4_1:74890704-74890723 None:intergenic 45.0%
! CCAGATTCGGTAATCAAACG+TGG - chr4_1:74890869-74890888 None:intergenic 45.0%
CCACGTTTGATTACCGAATC+TGG + chr4_1:74890866-74890885 Msa0572090:intron 45.0%
CATGGCGTTATCCTCGAAAA+GGG + chr4_1:74891134-74891153 Msa0572090:intron 45.0%
TATCCTCGAAAAGGGAAACC+TGG + chr4_1:74891142-74891161 Msa0572090:intron 45.0%
! CGATAGGTCCAACCTTTTCA+AGG - chr4_1:74891196-74891215 None:intergenic 45.0%
TGAAAAGGTTGGACCTATCG+TGG + chr4_1:74891196-74891215 Msa0572090:intron 45.0%
GAAAAGGTTGGACCTATCGT+GGG + chr4_1:74891197-74891216 Msa0572090:intron 45.0%
GACTACAATAGACCCACGAT+AGG - chr4_1:74891212-74891231 None:intergenic 45.0%
CCACTTAATGGGATAAGGCT+TGG - chr4_1:74891727-74891746 None:intergenic 45.0%
! CCAAGCCTTATCCCATTAAG+TGG + chr4_1:74891724-74891743 Msa0572090:intron 45.0%
CAGACCCACTTAATGGGATA+AGG - chr4_1:74891732-74891751 None:intergenic 45.0%
CTTATCCCATTAAGTGGGTC+TGG + chr4_1:74891730-74891749 Msa0572090:intron 45.0%
TGTAGCCAGACCCACTTAAT+GGG - chr4_1:74891738-74891757 None:intergenic 45.0%
ATGTAGCCAGACCCACTTAA+TGG - chr4_1:74891739-74891758 None:intergenic 45.0%
ATTAAGTGGGTCTGGCTACA+TGG + chr4_1:74891738-74891757 Msa0572090:intron 45.0%
TTAAGAGAGTGGATGTGGTC+AGG - chr4_1:74891888-74891907 None:intergenic 45.0%
TCGAGATCCTAGACAAGATC+GGG + chr4_1:74891954-74891973 Msa0572090:intron 45.0%
AGGGTGACAGTATCGTGAAT+CGG + chr4_1:74891979-74891998 Msa0572090:intron 45.0%
TGAATCGGAGGATCGTAACA+TGG + chr4_1:74891994-74892013 Msa0572090:intron 45.0%
TGCTTAGTGGTGTATTGCGA+AGG + chr4_1:74892137-74892156 Msa0572090:intron 45.0%
GGTATGGAATCGGAAATTGG+TGG - chr4_1:74892511-74892530 None:intergenic 45.0%
TGGTGGAAACAAGGTTTAGG+TGG - chr4_1:74892618-74892637 None:intergenic 45.0%
TCCGTCCCATACAACATTGT+CGG + chr4_1:74892756-74892775 Msa0572090:intron 45.0%
ACCGACAATGTTGTATGGGA+CGG - chr4_1:74892760-74892779 None:intergenic 45.0%
! GTAAGTACCACACTGGTTGA+AGG - chr4_1:74892808-74892827 None:intergenic 45.0%
GTGATACGTAAGTACCACAC+TGG - chr4_1:74892815-74892834 None:intergenic 45.0%
CGTATCACATAGAACACACG+AGG + chr4_1:74892827-74892846 Msa0572090:intron 45.0%
TTGTCTTGCCTCTAGTCATG+CGG + chr4_1:74893030-74893049 Msa0572090:intron 45.0%
TATTGCTTCCGCATGACTAG+AGG - chr4_1:74893041-74893060 None:intergenic 45.0%
! GGGAGTATAAGACTTGGAGA+CGG - chr4_1:74893076-74893095 None:intergenic 45.0%
CTAGTTTGAACACGCAGAGT+GGG - chr4_1:74893270-74893289 None:intergenic 45.0%
! TCTAGTTTGAACACGCAGAG+TGG - chr4_1:74893271-74893290 None:intergenic 45.0%
AGTGCCTAGATGTTGTGGAA+AGG - chr4_1:74893346-74893365 None:intergenic 45.0%
! GATAGAGTGCCTAGATGTTG+TGG - chr4_1:74893351-74893370 None:intergenic 45.0%
! TCCATCCAATGTTGCTTCCT+AGG + chr4_1:74893418-74893437 Msa0572090:intron 45.0%
CATGTTCATAGGGACTGTCA+AGG + chr4_1:74893641-74893660 Msa0572090:intron 45.0%
TCTTATGCATGCGTATTCGC+CGG - chr4_1:74893759-74893778 None:intergenic 45.0%
GTGACCGACAAGATGAATCT+TGG - chr4_1:74893868-74893887 None:intergenic 45.0%
!! CAAGCTCTTTGGAATGGACT+TGG + chr4_1:74894135-74894154 Msa0572090:intron 45.0%
CCGTGAAGAACTGTTAATGC+AGG + chr4_1:74894550-74894569 Msa0572090:intron 45.0%
GTTAATGCAGGCAAAGAAGC+AGG + chr4_1:74894562-74894581 Msa0572090:intron 45.0%
!! GGATTTGGTGGCAATTGAAC+TGG - chr4_1:74894597-74894616 None:intergenic 45.0%
AGTCAGACAACAACGCATAG+TGG - chr4_1:74894740-74894759 None:intergenic 45.0%
CGAGTTAACACAACAGATGC+AGG - chr4_1:74894775-74894794 None:intergenic 45.0%
CTCGGCAACAAAGAATGCAA+AGG + chr4_1:74894791-74894810 Msa0572090:intron 45.0%
CATCACTTTGCATTGCTCCA+AGG - chr4_1:74893848-74893867 None:intergenic 45.0%
GCAATGTGGTTCGTTCCTAT+TGG - chr4_1:74895024-74895043 None:intergenic 45.0%
GGCCAGCAATGGAGAATTTA+GGG + chr4_1:74895183-74895202 Msa0572090:intron 45.0%
GCCAGCAATGGAGAATTTAG+GGG + chr4_1:74895184-74895203 Msa0572090:intron 45.0%
CCAGCAATGGAGAATTTAGG+GGG + chr4_1:74895185-74895204 Msa0572090:intron 45.0%
CAGCAATGGAGAATTTAGGG+GGG + chr4_1:74895186-74895205 Msa0572090:intron 45.0%
! TGAATTTCCCTTGTTGTGGG+TGG + chr4_1:74895251-74895270 Msa0572090:intron 45.0%
AAGAATGTCGCCACAAATGG+TGG - chr4_1:74895380-74895399 None:intergenic 45.0%
AGGAAGAATGTCGCCACAAA+TGG - chr4_1:74895383-74895402 None:intergenic 45.0%
ATGGCAGAACATGGAAGTAG+AGG - chr4_1:74895430-74895449 None:intergenic 45.0%
CTACTTCCATGTTCTGCCAT+TGG + chr4_1:74895430-74895449 Msa0572090:intron 45.0%
GAAATGCCAATGGCAGAACA+TGG - chr4_1:74895439-74895458 None:intergenic 45.0%
! AGTGGTGGGGCAATAAGTTT+GGG + chr4_1:74895548-74895567 Msa0572090:CDS 45.0%
! AAGTTTGGGTTTGTCTCTGG+TGG + chr4_1:74895562-74895581 Msa0572090:CDS 45.0%
!! TTTGTCTCTGGTGGATTGCT+CGG + chr4_1:74895571-74895590 Msa0572090:CDS 45.0%
! GTACCGTTGATTGCTATTCC+AGG + chr4_1:74895888-74895907 Msa0572090:intron 45.0%
TAGACCTTGCTTTCCTGTTG+TGG - chr4_1:74895920-74895939 None:intergenic 45.0%
ACAACAGGAAAGCAAGGTCT+AGG + chr4_1:74895919-74895938 Msa0572090:CDS 45.0%
AAGGTCTAGGTATCAAGGAC+AGG + chr4_1:74895932-74895951 Msa0572090:CDS 45.0%
AGATGATGAGGTGGAAATGG+TGG + chr4_1:74896056-74896075 Msa0572090:CDS 45.0%
CACAAGAAATAGGCCTCACT+TGG - chr4_1:74896149-74896168 None:intergenic 45.0%
TCACTTTATGTACAGGTGCC+TGG + chr4_1:74896211-74896230 Msa0572090:intron 45.0%
GGAGGAAGAAAAAAGGGTTG+AGG + chr4_1:74896759-74896778 Msa0572090:three_prime_UTR 45.0%
AAAACCAGTGGACACACACT+TGG - chr4_1:74896967-74896986 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAC+CGG + chr4_1:74890596-74890615 Msa0572090:intron 5.0%
!! ACAATTAATTAATAATTAAT+TGG + chr4_1:74892286-74892305 Msa0572090:intron 5.0%
!! AAAATAAAAGTAAAAAAAAA+GGG + chr4_1:74893193-74893212 Msa0572090:intron 5.0%
CTACTTGGTTGCGGTTGAGT+TGG - chr4_1:74889056-74889075 None:intergenic 50.0%
ATCAGCGTCAATTCTGTCGG+CGG + chr4_1:74889186-74889205 Msa0572090:five_prime_UTR 50.0%
GACACCGACGTAATTGAGAG+GGG - chr4_1:74889232-74889251 None:intergenic 50.0%
CGACACCGACGTAATTGAGA+GGG - chr4_1:74889233-74889252 None:intergenic 50.0%
ATAGAGAGAGAGGGAGAGAG+CGG - chr4_1:74889297-74889316 None:intergenic 50.0%
! GTGTGGTGTCAAATGCCCAT+TGG - chr4_1:74889936-74889955 None:intergenic 50.0%
AGAGAGTAACACGGCTAAGG+TGG + chr4_1:74890233-74890252 Msa0572090:intron 50.0%
TAAGGTGGAAACTGAGGTGG+TGG + chr4_1:74890248-74890267 Msa0572090:CDS 50.0%
GGATGTTCCTGTTGATCCTG+AGG + chr4_1:74890269-74890288 Msa0572090:CDS 50.0%
TCCAGAGCTACTAGACCACA+AGG + chr4_1:74890303-74890322 Msa0572090:CDS 50.0%
TCCTTGTGGTCTAGTAGCTC+TGG - chr4_1:74890307-74890326 None:intergenic 50.0%
GAGCTACTAGACCACAAGGA+AGG + chr4_1:74890307-74890326 Msa0572090:CDS 50.0%
!! CCTTTTCGAGGATAACGCCA+TGG - chr4_1:74891136-74891155 None:intergenic 50.0%
CCATGGCGTTATCCTCGAAA+AGG + chr4_1:74891133-74891152 Msa0572090:intron 50.0%
! ACACCAGGTTTCCCTTTTCG+AGG - chr4_1:74891148-74891167 None:intergenic 50.0%
GGAGGGAACTTTATGACACC+AGG - chr4_1:74891163-74891182 None:intergenic 50.0%
TTCAAGGGACACGTCATGGA+GGG - chr4_1:74891180-74891199 None:intergenic 50.0%
TTTCAAGGGACACGTCATGG+AGG - chr4_1:74891181-74891200 None:intergenic 50.0%
!! CCTTTTCAAGGGACACGTCA+TGG - chr4_1:74891184-74891203 None:intergenic 50.0%
CCATGACGTGTCCCTTGAAA+AGG + chr4_1:74891181-74891200 Msa0572090:intron 50.0%
GACGTGTCCCTTGAAAAGGT+TGG + chr4_1:74891185-74891204 Msa0572090:intron 50.0%
CTTGGCGCAACAACTAGACT+TGG - chr4_1:74891314-74891333 None:intergenic 50.0%
CGAGATCCTAGACAAGATCG+GGG + chr4_1:74891955-74891974 Msa0572090:intron 50.0%
GTGACAGTATCGTGAATCGG+AGG + chr4_1:74891982-74892001 Msa0572090:intron 50.0%
CGGAGGATCGTAACATGGAT+CGG + chr4_1:74891999-74892018 Msa0572090:intron 50.0%
!! GAAATTCTGGGTTAGCGGGT+CGG - chr4_1:74892415-74892434 None:intergenic 50.0%
TACCACCTGCGTGCTTGATT+GGG - chr4_1:74892532-74892551 None:intergenic 50.0%
! GGTTTAGGTGGTTTGGACCA+TGG - chr4_1:74892606-74892625 None:intergenic 50.0%
! GTTGTATGGGACGGAGTGTT+GGG - chr4_1:74892751-74892770 None:intergenic 50.0%
TGTTGTATGGGACGGAGTGT+TGG - chr4_1:74892752-74892771 None:intergenic 50.0%
AGTGTTCCCTTCAACCAGTG+TGG + chr4_1:74892798-74892817 Msa0572090:intron 50.0%
CTCTCTCGACTCTCTTGAGT+AGG + chr4_1:74893104-74893123 Msa0572090:intron 50.0%
!!! CACATCTCGGTGCTAGCTTT+TGG + chr4_1:74893149-74893168 Msa0572090:intron 50.0%
AAGGGCTTAGGGTTAACCCT+CGG + chr4_1:74893211-74893230 Msa0572090:intron 50.0%
GCCTAGGAAGCAACATTGGA+TGG - chr4_1:74893422-74893441 None:intergenic 50.0%
CATAGGGATTGTCAAGACCC+AGG + chr4_1:74893565-74893584 Msa0572090:intron 50.0%
GCTGATTGCTGATGGAAGAG+CGG - chr4_1:74894032-74894051 None:intergenic 50.0%
CCTTCTGAGCTGATTGCTGA+TGG - chr4_1:74894040-74894059 None:intergenic 50.0%
CCATCAGCAATCAGCTCAGA+AGG + chr4_1:74894037-74894056 Msa0572090:intron 50.0%
!! GGAAAAGCGGATTGCTCATC+CGG - chr4_1:74894092-74894111 None:intergenic 50.0%
!! GCTCTTTGGAATGGACTTGG+TGG + chr4_1:74894138-74894157 Msa0572090:intron 50.0%
TGCTCCAAGGTTCATCTTGC+CGG - chr4_1:74894845-74894864 None:intergenic 50.0%
TGAAACTATGGGGCCAGCAA+TGG + chr4_1:74895172-74895191 Msa0572090:intron 50.0%
GGGCCAGCAATGGAGAATTT+AGG + chr4_1:74895182-74895201 Msa0572090:intron 50.0%
CCCCCTAAATTCTCCATTGC+TGG - chr4_1:74895188-74895207 None:intergenic 50.0%
CAATGGAGAATTTAGGGGGG+CGG + chr4_1:74895189-74895208 Msa0572090:intron 50.0%
AATGGAGAATTTAGGGGGGC+GGG + chr4_1:74895190-74895209 Msa0572090:intron 50.0%
GATAGAGCCACCCACAACAA+GGG - chr4_1:74895261-74895280 None:intergenic 50.0%
CACCACTCTGGATGGATATC+GGG - chr4_1:74895535-74895554 None:intergenic 50.0%
CCACCACTCTGGATGGATAT+CGG - chr4_1:74895536-74895555 None:intergenic 50.0%
CGATATCCATCCAGAGTGGT+GGG + chr4_1:74895534-74895553 Msa0572090:CDS 50.0%
GATATCCATCCAGAGTGGTG+GGG + chr4_1:74895535-74895554 Msa0572090:CDS 50.0%
AACTTATTGCCCCACCACTC+TGG - chr4_1:74895547-74895566 None:intergenic 50.0%
! GAGTGGTGGGGCAATAAGTT+TGG + chr4_1:74895547-74895566 Msa0572090:CDS 50.0%
GACAGGACCAAGAAAGTAGC+TGG + chr4_1:74895949-74895968 Msa0572090:CDS 50.0%
TGATGAGGTGGAAATGGTGG+TGG + chr4_1:74896059-74896078 Msa0572090:CDS 50.0%
!! GGTGGAAATGGTGGTGGAAA+AGG + chr4_1:74896065-74896084 Msa0572090:CDS 50.0%
!! GGAAATGGTGGTGGAAAAGG+TGG + chr4_1:74896068-74896087 Msa0572090:CDS 50.0%
CTACCTGTCAGCTGAAGTCA+AGG - chr4_1:74896640-74896659 None:intergenic 50.0%
GACTTCAGCTGACAGGTAGT+CGG + chr4_1:74896641-74896660 Msa0572090:intron 50.0%
CGAAGGGAAAACAGTGCGAT+TGG + chr4_1:74896675-74896694 Msa0572090:CDS 50.0%
ACTTCCAAGTGTGTGTCCAC+TGG + chr4_1:74896960-74896979 Msa0572090:three_prime_UTR 50.0%
! TGAGTTGGGTCGGATCGGAT+CGG - chr4_1:74889041-74889060 None:intergenic 55.0%
!! TGGTTGCGGTTGAGTTGGGT+CGG - chr4_1:74889051-74889070 None:intergenic 55.0%
CAATTCTGTCGGCGGAACCA+TGG + chr4_1:74889194-74889213 Msa0572090:exon 55.0%
GCGACACCGACGTAATTGAG+AGG - chr4_1:74889234-74889253 None:intergenic 55.0%
!! TCAATTACGTCGGTGTCGCC+AGG + chr4_1:74889235-74889254 Msa0572090:CDS 55.0%
CTTCATGAGACGGAAAGCGG+CGG - chr4_1:74889265-74889284 None:intergenic 55.0%
AAGGGATGGGAGGAAGGAGA+AGG + chr4_1:74889380-74889399 Msa0572090:intron 55.0%
TGGGAGGAAGGAGAAGGTCT+TGG + chr4_1:74889386-74889405 Msa0572090:CDS 55.0%
GCGCCAGTATCCAATGACAC+AGG + chr4_1:74890110-74890129 Msa0572090:intron 55.0%
CACGGCTAAGGTGGAAACTG+AGG + chr4_1:74890242-74890261 Msa0572090:CDS 55.0%
GGCTAAGGTGGAAACTGAGG+TGG + chr4_1:74890245-74890264 Msa0572090:CDS 55.0%
GCAGCAACCTCAGGATCAAC+AGG - chr4_1:74890279-74890298 None:intergenic 55.0%
CTGGATACAGCAGCAACCTC+AGG - chr4_1:74890288-74890307 None:intergenic 55.0%
GGATGTGGTCAGGTCACTAG+AGG - chr4_1:74891878-74891897 None:intergenic 55.0%
ATCCTAGACAAGATCGGGGC+AGG + chr4_1:74891959-74891978 Msa0572090:intron 55.0%
TCCTAGACAAGATCGGGGCA+GGG + chr4_1:74891960-74891979 Msa0572090:intron 55.0%
!!! CGTTTTTTGAAGCCGGGTCG+CGG + chr4_1:74892387-74892406 Msa0572090:intron 55.0%
GAAACGACTGTCGCGCGTTT+CGG - chr4_1:74892458-74892477 None:intergenic 55.0%
! GTCGTTTCCACGCGTTTTCG+CGG + chr4_1:74892470-74892489 Msa0572090:intron 55.0%
! GAATCGGAAATTGGTGGGCG+CGG - chr4_1:74892505-74892524 None:intergenic 55.0%
CCTGCGTGCTTGATTGGGTA+TGG - chr4_1:74892527-74892546 None:intergenic 55.0%
CCATACCCAATCAAGCACGC+AGG + chr4_1:74892524-74892543 Msa0572090:intron 55.0%
TACCCAATCAAGCACGCAGG+TGG + chr4_1:74892527-74892546 Msa0572090:intron 55.0%
GTACCACCTGCGTGCTTGAT+TGG - chr4_1:74892533-74892552 None:intergenic 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr4_1:74892693-74892712 None:intergenic 55.0%
ATTTGGGGGTGAGGGGTAGT+AGG - chr4_1:74893591-74893610 None:intergenic 55.0%
!! GGAAGAGCGGATTGCTCATC+CGG - chr4_1:74894019-74894038 None:intergenic 55.0%
GTGACCGGCAAGATGAACCT+TGG + chr4_1:74894838-74894857 Msa0572090:intron 55.0%
ATGGAGAATTTAGGGGGGCG+GGG + chr4_1:74895191-74895210 Msa0572090:intron 55.0%
CGATAGAGCCACCCACAACA+AGG - chr4_1:74895262-74895281 None:intergenic 55.0%
TGTGGCGACATTCTTCCTGC+AGG + chr4_1:74895385-74895404 Msa0572090:intron 55.0%
GTGGCGACATTCTTCCTGCA+GGG + chr4_1:74895386-74895405 Msa0572090:intron 55.0%
GTCCCGATATCCATCCAGAG+TGG + chr4_1:74895530-74895549 Msa0572090:CDS 55.0%
CCGATATCCATCCAGAGTGG+TGG + chr4_1:74895533-74895552 Msa0572090:CDS 55.0%
TATTGCCCCACCACTCTGGA+TGG - chr4_1:74895543-74895562 None:intergenic 55.0%
GGTCCTTGACTTCAGCTGAC+AGG + chr4_1:74896634-74896653 Msa0572090:intron 55.0%
GAGTTGGGTCGGATCGGATC+GGG - chr4_1:74889040-74889059 None:intergenic 60.0%
!! GCGGTTGAGTTGGGTCGGAT+CGG - chr4_1:74889046-74889065 None:intergenic 60.0%
TTCTGTCGGCGGAACCATGG+CGG + chr4_1:74889197-74889216 Msa0572090:exon 60.0%
! ACGGAAAGCGGCGGATTTCC+TGG - chr4_1:74889256-74889275 None:intergenic 60.0%
ACATAGCAACCGCGCAGCAC+CGG - chr4_1:74890618-74890637 None:intergenic 60.0%
GGTCAGGTCACTAGAGGCAG+AGG - chr4_1:74891872-74891891 None:intergenic 60.0%
ACCCTGCCCCGATCTTGTCT+AGG - chr4_1:74891964-74891983 None:intergenic 60.0%
! TGCATGCGTATTCGCCGGCT+TGG - chr4_1:74893754-74893773 None:intergenic 60.0%
TGGAGAATTTAGGGGGGCGG+GGG + chr4_1:74895192-74895211 Msa0572090:intron 60.0%
TGGGTCGGATCGGATCGGGT+CGG - chr4_1:74889036-74889055 None:intergenic 65.0%
AGGATCGCCGCGAAAACGCG+TGG - chr4_1:74892480-74892499 None:intergenic 65.0%
! ACGCGTTTTCGCGGCGATCC+TGG + chr4_1:74892479-74892498 Msa0572090:intron 65.0%
GGGTGAGGGGTAGTAGGCCT+GGG - chr4_1:74893585-74893604 None:intergenic 65.0%
GGAGAATTTAGGGGGGCGGG+GGG + chr4_1:74895193-74895212 Msa0572090:intron 65.0%
! AGGGGTTTCAGGCGCCGCCA+TGG - chr4_1:74889214-74889233 None:intergenic 70.0%
! GGAAATTGGTGGGCGCGGCC+AGG - chr4_1:74892500-74892519 None:intergenic 70.0%
GGGGTGAGGGGTAGTAGGCC+TGG - chr4_1:74893586-74893605 None:intergenic 70.0%
AGCGGGTCGGATCCGCGACC+CGG - chr4_1:74892402-74892421 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 74888987 74897079 74888987 ID=Msa0572090;Name=Msa0572090
chr4_1 mRNA 74888987 74897079 74888987 ID=Msa0572090-mRNA-1;Parent=Msa0572090;Name=Msa0572090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=226|0.87|1|1|0.75|1|9|365|341
chr4_1 exon 74888987 74889290 74888987 ID=Msa0572090-mRNA-1:exon:25898;Parent=Msa0572090-mRNA-1
chr4_1 exon 74889383 74889467 74889383 ID=Msa0572090-mRNA-1:exon:25899;Parent=Msa0572090-mRNA-1
chr4_1 exon 74890235 74890328 74890235 ID=Msa0572090-mRNA-1:exon:25900;Parent=Msa0572090-mRNA-1
chr4_1 exon 74890447 74890513 74890447 ID=Msa0572090-mRNA-1:exon:25901;Parent=Msa0572090-mRNA-1
chr4_1 exon 74891550 74891646 74891550 ID=Msa0572090-mRNA-1:exon:25902;Parent=Msa0572090-mRNA-1
chr4_1 exon 74895521 74895702 74895521 ID=Msa0572090-mRNA-1:exon:25903;Parent=Msa0572090-mRNA-1
chr4_1 exon 74895910 74896149 74895910 ID=Msa0572090-mRNA-1:exon:25904;Parent=Msa0572090-mRNA-1
chr4_1 exon 74896226 74896342 74896226 ID=Msa0572090-mRNA-1:exon:25905;Parent=Msa0572090-mRNA-1
chr4_1 exon 74896649 74897079 74896649 ID=Msa0572090-mRNA-1:exon:25906;Parent=Msa0572090-mRNA-1
chr4_1 five_prime_UTR 74888987 74889212 74888987 ID=Msa0572090-mRNA-1:five_prime_utr;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74889213 74889290 74889213 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74889383 74889467 74889383 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74890235 74890328 74890235 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74890447 74890513 74890447 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74891550 74891646 74891550 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74895521 74895702 74895521 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74895910 74896149 74895910 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74896226 74896342 74896226 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 CDS 74896649 74896714 74896649 ID=Msa0572090-mRNA-1:cds;Parent=Msa0572090-mRNA-1
chr4_1 three_prime_UTR 74896715 74897079 74896715 ID=Msa0572090-mRNA-1:three_prime_utr;Parent=Msa0572090-mRNA-1
Gene Sequence

>Msa0572090

ATGGCGGCGCCTGAAACCCCTCTCAATTACGTCGGTGTCGCCAGGAAATCCGCCGCTTTCCGTCTCATGAAGCAAATGGGATGGGAGGAAGGAGAAGGTCTTGGCAAAGAAAAACAAGGGATCAAAGGACACGTTCGTGTCACCAACAAACAAGACACTACTGAGAGTAACACGGCTAAGGTGGAAACTGAGGTGGTGGATGTTCCTGTTGATCCTGAGGTTGCTGCTGTATCCAGAGCTACTAGACCACAAGGAAGATACAAGAAAAGAGAAAGAGGGAAGCTCGTCTCTCATTATTCCTCAAAGGATCTTGAAGGAATTCTTGTAAAAAAGAGTGACATATCTGAGGAGGGTACTGACAATGCTGATGATGAATTGGATTTATCAAAGACACCTGACTTTCAAGATTTTGAAGATGAAGGAAGCAAATGTCCCGATATCCATCCAGAGTGGTGGGGCAATAAGTTTGGGTTTGTCTCTGGTGGATTGCTCGGTGCAGCATCAAAGAAGAAAAAGTCCTCTACATCTGAAATTGCTAAAAGTGGGATGGCGAGAACTCCTTTTTTTGAACAAGATCAAGAAAACCTCTACAATTTAGTCCAAGATAAATCCACAACAGGAAAGCAAGGTCTAGGTATCAAGGACAGGACCAAGAAAGTAGCTGGATGCTATTTTCAGGGTAAAAAGACATCATTTGGTAATAGTGACGAAGAAGATTCTGCTGACATAGATTCTCTAGAAAACGAAACAGATGATGAGGTGGAAATGGTGGTGGAAAAGGTGGAAAAGATTGTTGAACCCAAAATGAAGCTGAAGAAATTGTGCAAGCAGATTTTAAACCAAGTGCCTGGAGAATCATTGAAACTGAAACAGCTCAAAGTTCTTATTGAACAACATTCATCTTCAATTTTGTCTGACTTGTCTTCGAAAAAAGAGGCTGTTGCTTACTTGAAGCAAAAGCTGACAGGTAGTCGGAATTTTTGTATCGAAGGGAAAACAGTGCGATTGGCATTTAAGAGAAGTTGA

Protein sequence

>Msa0572090

MAAPETPLNYVGVARKSAAFRLMKQMGWEEGEGLGKEKQGIKGHVRVTNKQDTTESNTAKVETEVVDVPVDPEVAAVSRATRPQGRYKKRERGKLVSHYSSKDLEGILVKKSDISEEGTDNADDELDLSKTPDFQDFEDEGSKCPDIHPEWWGNKFGFVSGGLLGAASKKKKSSTSEIAKSGMARTPFFEQDQENLYNLVQDKSTTGKQGLGIKDRTKKVAGCYFQGKKTSFGNSDEEDSADIDSLENETDDEVEMVVEKVEKIVEPKMKLKKLCKQILNQVPGESLKLKQLKVLIEQHSSSILSDLSSKKEAVAYLKQKLTGSRNFCIEGKTVRLAFKRS*