AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006110 MtrunA17_Chr1g0149971 91.992 949 31 7 1 915 1 938 0.0 1603
Msa0006110 MtrunA17_Chr3g0137011 44.231 884 318 15 1 855 1 738 0.0 599
Msa0006110 MtrunA17_Chr4g0001301 47.111 225 119 0 43 267 46 270 2.09e-66 238
Msa0006110 MtrunA17_Chr4g0001301 54.098 61 28 0 623 683 761 821 4.04e-17 86.7
Msa0006110 MtrunA17_Chr2g0290621 46.977 215 114 0 16 230 13 227 6.61e-55 207
Msa0006110 MtrunA17_Chr2g0290621 37.615 109 65 1 572 677 1312 1420 1.61e-14 78.6
Msa0006110 MtrunA17_Chr4g0076411 45.116 215 118 0 23 237 29 243 1.10e-51 197
Msa0006110 MtrunA17_Chr4g0076411 42.857 77 40 2 604 677 1353 1428 1.46e-14 78.6
Msa0006110 MtrunA17_Chr1g0164141 38.596 171 105 0 53 223 61 231 5.27e-34 141
Msa0006110 MtrunA17_Chr4g0013631 47.059 102 54 0 24 125 33 134 2.07e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006110 AT4G31880.1 42.750 800 355 20 1 759 1 738 3.89e-164 502
Msa0006110 AT4G31880.2 42.875 800 353 20 1 759 1 737 1.04e-163 501
Msa0006110 AT1G80810.5 51.012 247 121 0 7 253 9 255 2.29e-76 263
Msa0006110 AT1G80810.3 51.012 247 121 0 7 253 9 255 7.23e-76 265
Msa0006110 AT1G15940.1 50.584 257 126 1 9 264 13 269 2.25e-75 267
Msa0006110 AT1G80810.4 52.217 203 97 0 51 253 1 203 2.57e-64 232
Msa0006110 AT1G80810.2 52.217 203 97 0 51 253 1 203 2.57e-64 232
Msa0006110 AT1G80810.1 52.217 203 97 0 51 253 1 203 2.61e-64 232
Msa0006110 AT5G47690.2 49.115 226 115 0 9 234 6 231 3.08e-54 206
Msa0006110 AT5G47690.2 45.455 77 38 2 604 677 1346 1421 1.38e-14 79.3
Msa0006110 AT5G47690.3 49.115 226 115 0 9 234 6 231 3.28e-54 206
Msa0006110 AT5G47690.3 45.455 77 38 2 604 677 1346 1421 1.40e-14 79.3
Msa0006110 AT5G47690.1 49.115 226 115 0 9 234 6 231 3.34e-54 206
Msa0006110 AT5G47690.1 45.455 77 38 2 604 677 1345 1420 1.43e-14 79.3
Msa0006110 AT5G47690.4 48.507 134 69 0 101 234 1 134 4.12e-28 123
Msa0006110 AT5G47690.4 45.455 77 38 2 604 677 1249 1324 1.75e-14 79.0
Msa0006110 AT1G77600.1 33.190 232 122 5 27 228 25 253 1.58e-27 121
Msa0006110 AT1G77600.2 33.190 232 122 5 27 228 25 253 1.82e-27 120
Msa0006110 AT1G77600.3 33.190 232 122 5 27 228 25 253 2.78e-27 120
Msa0006110 AT5G10950.1 31.034 319 175 7 607 881 20 337 2.07e-18 89.0
Msa0006110 AT4G32970.1 45.679 81 42 1 577 655 236 316 2.16e-12 71.6

Find 168 sgRNAs with CRISPR-Local

Find 631 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTGGATTTCTTTGTTT+TGG 0.135848 1_1:+8867535 None:intergenic
ATTCACAGCTTGCAATAAAT+TGG 0.137673 1_1:+8872203 None:intergenic
TGAATGCGATGCCCTCATTT+TGG 0.211745 1_1:-8873258 Msa0006110:CDS
CTCCTCTGAATGTTCATCTT+TGG 0.212857 1_1:+8870713 None:intergenic
TGCCAACAATCTTGGACTTT+TGG 0.217412 1_1:+8867762 None:intergenic
GAATACCTTGGGTATTTCTT+TGG 0.248145 1_1:-8872184 Msa0006110:CDS
TGTTTCAACATCATCATCTT+TGG 0.263549 1_1:+8867520 None:intergenic
TTTGGAACCATCAGTCTTCT+TGG 0.272724 1_1:+8867553 None:intergenic
ATGGTACTTCTTTCCAGCTT+TGG 0.280257 1_1:+8871586 None:intergenic
CTGGTACTTCTTTCCAGCTT+TGG 0.284916 1_1:+8871457 None:intergenic
CTATCCTCATTAAGAGAAAT+AGG 0.285148 1_1:+8871316 None:intergenic
GACTTGGCAGCAGCAGGCTT+TGG 0.294881 1_1:+8867497 None:intergenic
ACAACATTTGATTTCTTAGA+AGG 0.300643 1_1:+8871394 None:intergenic
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_1:-8871529 Msa0006110:intron
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_1:-8871658 Msa0006110:intron
CGGTACCATCTTGATTCTTA+AGG 0.317971 1_1:+8871695 None:intergenic
TAAAGAAGGAATCTTCTAAA+AGG 0.321959 1_1:-8867906 Msa0006110:intron
ATCAGATTTGCCAACAATCT+TGG 0.333369 1_1:+8867754 None:intergenic
AGCATTTCTTGAAGACAATA+AGG 0.335459 1_1:-8873226 Msa0006110:intron
CTTCCGGCCTTTGAAGAACT+TGG 0.341166 1_1:+8867290 None:intergenic
GGTGAAATTCAATTTGTTGC+AGG 0.345226 1_1:-8867381 Msa0006110:CDS
TTCCTCTTCAGAGTTGTCTT+AGG 0.352079 1_1:+8870687 None:intergenic
TACATATCAGCAGAAGGTTC+AGG 0.356045 1_1:+8868502 None:intergenic
TTGCCAATTGCTCGAAAGTT+GGG 0.356161 1_1:-8872264 Msa0006110:CDS
GAGCTTGAAGAGGAGCTTCT+TGG 0.361460 1_1:-8876564 Msa0006110:CDS
AATCACCTTGTGCTTCTTAG+TGG 0.362706 1_1:+8869388 None:intergenic
TCCACTCTTGACCTCGCTTC+CGG 0.362848 1_1:+8867274 None:intergenic
TTCTTTACACTATCTAAGAT+TGG 0.363802 1_1:+8872417 None:intergenic
ATTTGATTTCTTAGAAGGTT+TGG 0.364123 1_1:+8871399 None:intergenic
AATCTTAGGTGTTCCTTGCT+TGG 0.371699 1_1:+8867445 None:intergenic
TAATGATGAGCGCGATGATA+TGG 0.372310 1_1:-8871506 Msa0006110:CDS
TAATGATGAGCGCGATGATA+TGG 0.372310 1_1:-8871635 Msa0006110:CDS
GCCTTGTTGCACAACTTTCA+AGG 0.376202 1_1:+8872232 None:intergenic
TGCTTAGACTTGGCAGCAGC+AGG 0.379630 1_1:+8867491 None:intergenic
GCAATTAATGCTTTCAATGA+TGG 0.382142 1_1:+8873622 None:intergenic
GTGATTGTTCAATCCTTGAT+AGG 0.382822 1_1:+8873674 None:intergenic
CATCGTGATTGCTCTCACTT+GGG 0.384010 1_1:+8871188 None:intergenic
TTTGTCATTCTCTGAAGTTC+CGG 0.387929 1_1:+8871279 None:intergenic
GGAGAGAAACCCACCACATC+TGG 0.391831 1_1:+8868615 None:intergenic
TTGGAGGAAGATGCAATCTT+AGG 0.392697 1_1:+8867431 None:intergenic
AGTACCATCTTGCTTCTTGA+TGG 0.393944 1_1:+8871567 None:intergenic
GGTACCATCTTGATTCTTAA+GGG 0.402411 1_1:+8871696 None:intergenic
TTCACAGCTTGCAATAAATT+GGG 0.404010 1_1:+8872204 None:intergenic
TTTCACCTTGGCAGTACTCT+TGG 0.405664 1_1:+8867397 None:intergenic
AGCTTTCTTTCCTTTCCTCC+TGG 0.407117 1_1:+8871438 None:intergenic
CAGAGTTTCTTGCTTAGACT+TGG 0.418244 1_1:+8867481 None:intergenic
CACCTTGGCAGTACTCTTGG+TGG 0.430285 1_1:+8867400 None:intergenic
TTGCAAGCTGTGAATACCTT+GGG 0.433319 1_1:-8872195 Msa0006110:CDS
AACAATGGCTTCCATCGATA+AGG 0.435483 1_1:-8876586 Msa0006110:exon
TCCTCCGGCTTCAGCGAAGA+TGG 0.435935 1_1:+8870965 None:intergenic
TCATCGTGATTGCTCTCACT+TGG 0.445993 1_1:+8871187 None:intergenic
TTGGAAAACGAGTGAAAGTT+TGG 0.452118 1_1:-8870377 Msa0006110:CDS
CTGAAGAGGAAGCGCACTCC+AGG 0.456469 1_1:-8870675 Msa0006110:CDS
TTGAAACAGTTGCAAAAGTC+AGG 0.456577 1_1:-8873304 Msa0006110:CDS
TGTGAAAGGTAGCTCAGAAA+AGG 0.460714 1_1:-8870924 Msa0006110:CDS
TTCTGCTGAAGATGAGGATA+AGG 0.461842 1_1:-8870888 Msa0006110:intron
CCATCATCGTAAGGAGCATC+AGG 0.463270 1_1:+8873517 None:intergenic
TTTGCCAATTGCTCGAAAGT+TGG 0.463830 1_1:-8872265 Msa0006110:CDS
TGATGTCTCTTTGCATATTG+AGG 0.470487 1_1:+8872140 None:intergenic
CAAAGAGACATCAGATAACT+TGG 0.472652 1_1:-8872130 Msa0006110:CDS
AGTTCCTATTTCTCTTAATG+AGG 0.475927 1_1:-8871320 Msa0006110:CDS
CTCTGATGATTCATCAAAAG+AGG 0.477468 1_1:-8867336 Msa0006110:CDS
GAAGAGGAGCTTCTTGGTGC+TGG 0.481281 1_1:-8876558 Msa0006110:CDS
TCTTGTTATCTCACTGAAGC+AGG 0.484650 1_1:+8873549 None:intergenic
GGGCGCTCCATAGTGAAAAT+CGG 0.486737 1_1:+8876778 None:intergenic
AAATTGAAAGCTGCCTATCA+AGG 0.491263 1_1:-8873687 Msa0006110:CDS
CCTGATGCTCCTTACGATGA+TGG 0.494019 1_1:-8873517 Msa0006110:CDS
ATTGCAAGCTGTGAATACCT+TGG 0.495747 1_1:-8872196 Msa0006110:CDS
TGGGCCATCTTCGCTGAAGC+CGG 0.496223 1_1:-8870969 Msa0006110:CDS
CCAGCAGCATTATCTTGTTG+TGG 0.496436 1_1:+8871796 None:intergenic
AGAAGAGGCCGTGGAGGAGT+CGG 0.498375 1_1:-8871958 Msa0006110:CDS
CGACAGTAAAGAACCAAAGC+TGG 0.500112 1_1:-8871470 Msa0006110:CDS
TGTACTTACATATTATCATC+TGG 0.502241 1_1:+8870351 None:intergenic
AACCAACAGCGTCAGATTCA+AGG 0.503072 1_1:+8871218 None:intergenic
ACCCAAAAGTCCAAGATTGT+TGG 0.505723 1_1:-8867764 Msa0006110:CDS
GAGGATCATTATAGTTTCCA+TGG 0.512597 1_1:+8872482 None:intergenic
GGCCGTGGAGGAGTCGGCAC+AGG 0.512947 1_1:-8871952 Msa0006110:intron
CAGGTCATGTGTGGTAATGC+TGG 0.515493 1_1:-8873285 Msa0006110:CDS
GCCATTGCTCATGACAGACT+TGG 0.517547 1_1:+8871762 None:intergenic
AAGCAAGAAACTCTGAAAAG+TGG 0.518119 1_1:-8867473 Msa0006110:CDS
ACGCAGTTATGGCTGATGTT+GGG 0.519304 1_1:-8870988 Msa0006110:CDS
AAGTCCTCTTTGAGTACCAT+CGG 0.520932 1_1:+8873333 None:intergenic
AGTAGATTATCCACAGAAGA+AGG 0.521193 1_1:+8876516 None:intergenic
AAGAAAGGGAAAACAAATGC+TGG 0.523409 1_1:-8867946 Msa0006110:CDS
ACATATCAGCAGAAGGTTCA+GGG 0.523521 1_1:+8868503 None:intergenic
TCTAGATCCTCCTTCTTCTG+TGG 0.525291 1_1:-8876526 Msa0006110:CDS
GCTGAAACATCTCCAAAATG+AGG 0.525907 1_1:+8873246 None:intergenic
TTCACATCAGAGCTACGAAT+GGG 0.526166 1_1:+8871022 None:intergenic
AACTGTTGTACACGCAGTTA+TGG 0.529876 1_1:-8870999 Msa0006110:CDS
AGCAAGAAACTCTGAAAAGT+GGG 0.531246 1_1:-8867472 Msa0006110:CDS
CACGCAGTTATGGCTGATGT+TGG 0.537789 1_1:-8870989 Msa0006110:CDS
CCACAACAAGATAATGCTGC+TGG 0.541512 1_1:-8871796 Msa0006110:CDS
TGCCAATTGCTCGAAAGTTG+GGG 0.542777 1_1:-8872263 Msa0006110:CDS
TTCATTTGACCATCATCGTA+AGG 0.547264 1_1:+8873508 None:intergenic
CGACAGTGAAGATCCAAAGC+TGG 0.547329 1_1:-8871599 Msa0006110:CDS
GTGAAAGGTAGCTCAGAAAA+GGG 0.548617 1_1:-8870923 Msa0006110:CDS
CAACAAATTGAATTTCACCT+TGG 0.548746 1_1:+8867385 None:intergenic
CTCCTAAGACAACTCTGAAG+AGG 0.549547 1_1:-8870689 Msa0006110:CDS
CTCTTCAAGCTCCTTATCGA+TGG 0.549642 1_1:+8876575 None:intergenic
GGCCTTGAATCTGACGCTGT+TGG 0.550492 1_1:-8871220 Msa0006110:CDS
CAAATCAGCAGAAGAGGCCG+TGG 0.553100 1_1:-8871967 Msa0006110:CDS
TAAGACACCAAGTTCTTCAA+AGG 0.556618 1_1:-8867297 Msa0006110:CDS
AAGATTTCATCATCTAAAGC+AGG 0.558832 1_1:-8871244 Msa0006110:CDS
GGAAATATTGAATTTCAAAG+AGG 0.559321 1_1:-8868670 Msa0006110:CDS
ATCAGCAGAAGAGGCCGTGG+AGG 0.560884 1_1:-8871964 Msa0006110:CDS
TAGTGAAAATCGGATCTCGC+GGG 0.565397 1_1:+8876788 None:intergenic
ACACCAAGTTCTTCAAAGGC+CGG 0.566066 1_1:-8867293 Msa0006110:CDS
ATTATCTTGTTGTGGTGGTG+TGG 0.567813 1_1:+8871804 None:intergenic
AACAATTCCAAGAAGACTGA+TGG 0.567967 1_1:-8867560 Msa0006110:CDS
ATCAAATGTTGTCAGTGAGA+AGG 0.568468 1_1:-8871383 Msa0006110:CDS
CTTCACTTTCTTCAAGACAG+AGG 0.568574 1_1:+8872463 None:intergenic
TGATCGCAAATCAGCAGAAG+AGG 0.569534 1_1:-8871973 Msa0006110:CDS
AGCAATGGCATTGCACAGGC+TGG 0.569751 1_1:-8871748 Msa0006110:CDS
AAAATCTTCTGCTGAAGATG+AGG 0.574455 1_1:-8870894 Msa0006110:CDS
TTACGATGATGGTCAAATGA+AGG 0.575678 1_1:-8873506 Msa0006110:intron
AGTACCATCAAGAAGCAAGA+TGG 0.582257 1_1:-8871571 Msa0006110:intron
CCCAAGTCTGTCATGAGCAA+TGG 0.584267 1_1:-8871763 Msa0006110:CDS
TTCTTCAAAGGCCGGAAGCG+AGG 0.584421 1_1:-8867285 Msa0006110:CDS
CCATTGCTCATGACAGACTT+GGG 0.584993 1_1:+8871763 None:intergenic
GAGGATCGATCTGTGAAAAG+TGG 0.587517 1_1:-8867611 Msa0006110:CDS
CTGAAACATCTCCAAAATGA+GGG 0.589075 1_1:+8873247 None:intergenic
AAGTCCCTTAAGAATCAAGA+TGG 0.589469 1_1:-8871700 Msa0006110:intron
TCCTTGAAAGTTGTGCAACA+AGG 0.590316 1_1:-8872233 Msa0006110:CDS
GAAAGAAGTACCAGGAGGAA+AGG 0.592223 1_1:-8871448 Msa0006110:CDS
CAAAGCTGGAAAGAAGTACC+AGG 0.592283 1_1:-8871456 Msa0006110:CDS
TGATTGCTCTCACTTGGGGA+AGG 0.597535 1_1:+8871193 None:intergenic
AACCAAAGATGAACATTCAG+AGG 0.606229 1_1:-8870715 Msa0006110:CDS
GAAAACGAGTGAAAGTTTGG+TGG 0.606844 1_1:-8870374 Msa0006110:CDS
ATCGTGATTGCTCTCACTTG+GGG 0.607109 1_1:+8871189 None:intergenic
GCAGCATTATCTTGTTGTGG+TGG 0.611398 1_1:+8871799 None:intergenic
GCCGGAAGCGAGGTCAAGAG+TGG 0.613992 1_1:-8867275 Msa0006110:CDS
CATGAGCAATGGCATTGCAC+AGG 0.614805 1_1:-8871752 Msa0006110:CDS
GCATTTAGCATAGATTCAGA+AGG 0.618101 1_1:+8873652 None:intergenic
CACCTGTGCCGACTCCTCCA+CGG 0.619846 1_1:+8871950 None:intergenic
GCCATCTTCGCTGAAGCCGG+AGG 0.620004 1_1:-8870966 Msa0006110:CDS
AAGAACGAAGGTTTCAACAA+TGG 0.620142 1_1:-8876601 Msa0006110:exon
TTTCACATCAGAGCTACGAA+TGG 0.622443 1_1:+8871021 None:intergenic
CATCGATAAGGAGCTTGAAG+AGG 0.623073 1_1:-8876574 Msa0006110:CDS
AAGATTGTTGGCAAATCTGA+TGG 0.623981 1_1:-8867752 Msa0006110:CDS
ACAAGATCTGCGAAGAACGA+AGG 0.625096 1_1:-8876613 Msa0006110:five_prime_UTR
AGTAAAACCAGCAAGGCCAT+CGG 0.625363 1_1:-8871056 Msa0006110:CDS
TAGTGTAAAGAAAGACAATG+AGG 0.626231 1_1:-8872406 Msa0006110:intron
CTTATATGATGACGGTGACG+AGG 0.627894 1_1:-8868691 Msa0006110:CDS
CAAGCCGATGGTACTCAAAG+AGG 0.634997 1_1:-8873337 Msa0006110:CDS
TGCAAAAGTCAGGTCATGTG+TGG 0.635420 1_1:-8873294 Msa0006110:CDS
ATCCACCAAGAGTACTGCCA+AGG 0.638641 1_1:-8867402 Msa0006110:CDS
AAAGGTGTCTGAAGGAACAT+CGG 0.639404 1_1:-8871086 Msa0006110:intron
ATAGTGAAAATCGGATCTCG+CGG 0.641183 1_1:+8876787 None:intergenic
TGTTATCTCACTGAAGCAGG+AGG 0.643833 1_1:+8873552 None:intergenic
AAAAGTGGGAAATCCAAGCA+AGG 0.645709 1_1:-8867458 Msa0006110:CDS
GAGGATCGTTCTGTGAAAAG+TGG 0.649043 1_1:-8867644 Msa0006110:CDS
ATTTCATCATCTAAAGCAGG+TGG 0.650486 1_1:-8871241 Msa0006110:CDS
GATCGTTCTGTGAAAAGCGG+TGG 0.650745 1_1:-8867674 Msa0006110:CDS
ATCATCCAAAGAAATACCCA+AGG 0.651603 1_1:+8872179 None:intergenic
ATTCTAAAGTAAAACCAGCA+AGG 0.653307 1_1:-8871063 Msa0006110:CDS
GAAAAGCGGTGGTAAATCTG+AGG 0.653841 1_1:-8867663 Msa0006110:CDS
GCCAATTGCTCGAAAGTTGG+GGG 0.654279 1_1:-8872262 Msa0006110:CDS
GGAACATACATATCAGCAGA+AGG 0.655262 1_1:+8868496 None:intergenic
AGATTATCCACAGAAGAAGG+AGG 0.659461 1_1:+8876519 None:intergenic
TTCTTCCACTAAGAAGCACA+AGG 0.667635 1_1:-8869393 Msa0006110:intron
GAGGATCGTTCTGTGAAAAG+CGG 0.667811 1_1:-8867677 Msa0006110:CDS
TACATGATAAGTCAAGCCGA+TGG 0.690536 1_1:-8873349 Msa0006110:CDS
AATGATGTATGTGCTACTAG+TGG 0.697284 1_1:-8872102 Msa0006110:CDS
ATGTGCTACTAGTGGTCATG+TGG 0.707351 1_1:-8872094 Msa0006110:intron
GATCGTTCTGTGAAAAGTGG+TGG 0.707911 1_1:-8867641 Msa0006110:CDS
GAAAAGTGGTGGTAAGTCTG+AGG 0.717018 1_1:-8867630 Msa0006110:CDS
AGTTGATGCTGATCCAGATG+TGG 0.718308 1_1:-8868628 Msa0006110:intron
AGCTGGAAAGAAGTACCAGG+AGG 0.729475 1_1:-8871453 Msa0006110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTATTTTATTATAT+TGG + chr1_1:8867297-8867316 None:intergenic 0.0%
!! AATATAAAATATTAAATAAT+TGG - chr1_1:8868540-8868559 Msa0006110:intron 0.0%
!! ATATAAAATATTAAATAATT+GGG - chr1_1:8868541-8868560 Msa0006110:intron 0.0%
!!! TTCATTTTAATAAAAAAGAT+AGG - chr1_1:8869494-8869513 Msa0006110:intron 10.0%
!! TATTAATTAATTTCAAATCA+TGG - chr1_1:8870238-8870257 Msa0006110:intron 10.0%
!!! CTTATTATTTATTTTGTTTT+TGG - chr1_1:8872032-8872051 Msa0006110:intron 10.0%
!! CTTATAATTTATATTTACAA+GGG - chr1_1:8875079-8875098 Msa0006110:intron 10.0%
!! TGTATTATCAATAAAAATAA+AGG + chr1_1:8875140-8875159 None:intergenic 10.0%
!!! TATTTTTATTGATAATACAA+AGG - chr1_1:8875141-8875160 Msa0006110:intron 10.0%
!!! AAACATTTTTCAAATTAAAT+AGG - chr1_1:8875220-8875239 Msa0006110:intron 10.0%
!!! TTGTTTTTATGATTATATTT+AGG - chr1_1:8876060-8876079 Msa0006110:intron 10.0%
!!! TTATATTGGTTTTTTCATTT+GGG + chr1_1:8867283-8867302 None:intergenic 15.0%
!!! ATTATATTGGTTTTTTCATT+TGG + chr1_1:8867284-8867303 None:intergenic 15.0%
!!! TATCTATGTTTTTATATCAA+GGG + chr1_1:8867339-8867358 None:intergenic 15.0%
!!! TTATCTATGTTTTTATATCA+AGG + chr1_1:8867340-8867359 None:intergenic 15.0%
!!! AACATTGTTAAGTATTTTTT+AGG - chr1_1:8867784-8867803 Msa0006110:CDS 15.0%
!!! ACATTGTTAAGTATTTTTTA+GGG - chr1_1:8867785-8867804 Msa0006110:CDS 15.0%
!!! GGAAATTTGAAAATAATTTT+TGG - chr1_1:8867810-8867829 Msa0006110:CDS 15.0%
!!! GATGATTTTTTAAAGTTTAT+TGG - chr1_1:8867862-8867881 Msa0006110:intron 15.0%
!!! TTAAAGTTTATTGGATTTTT+AGG - chr1_1:8867871-8867890 Msa0006110:intron 15.0%
!! AAAATATTAAATAATTGGGT+TGG - chr1_1:8868545-8868564 Msa0006110:intron 15.0%
!! AAATATTAAATAATTGGGTT+GGG - chr1_1:8868546-8868565 Msa0006110:intron 15.0%
!! TTCCATATAAATAGATAATT+CGG + chr1_1:8868677-8868696 None:intergenic 15.0%
!!! TATTGATTAACGAATATAAT+TGG + chr1_1:8868710-8868729 None:intergenic 15.0%
!! AATTATATTCGTTAATCAAT+AGG - chr1_1:8868709-8868728 Msa0006110:intron 15.0%
!! TAAAACAAGTTCATTAAAAT+AGG - chr1_1:8869426-8869445 Msa0006110:CDS 15.0%
!! TTAAAATGAAATGAAATTAC+AGG + chr1_1:8869484-8869503 None:intergenic 15.0%
!! ATCTATGTAATATTAATATG+TGG + chr1_1:8869587-8869606 None:intergenic 15.0%
!!! TGTTAATTGTAAATTTGTTT+TGG - chr1_1:8869969-8869988 Msa0006110:intron 15.0%
!!! GTTAATTGTAAATTTGTTTT+GGG - chr1_1:8869970-8869989 Msa0006110:intron 15.0%
!!! TTAATTGTAAATTTGTTTTG+GGG - chr1_1:8869971-8869990 Msa0006110:intron 15.0%
!!! GATATCTTAATTTTAATACT+TGG + chr1_1:8871156-8871175 None:intergenic 15.0%
!! AAACGAAAAATAAAACATAT+AGG + chr1_1:8872125-8872144 None:intergenic 15.0%
!! AATATTAGTAAAGAAATGTT+AGG + chr1_1:8873195-8873214 None:intergenic 15.0%
!!! AATTTTAAATTAACAGAACA+GGG + chr1_1:8873406-8873425 None:intergenic 15.0%
!!! AAATTTTAAATTAACAGAAC+AGG + chr1_1:8873407-8873426 None:intergenic 15.0%
!!! TGTTCTGTTAATTTAAAATT+TGG - chr1_1:8873406-8873425 Msa0006110:intron 15.0%
!! ACAGTTTATTTAATATAACA+TGG + chr1_1:8874378-8874397 None:intergenic 15.0%
!!! AAAGTTTTACTGAAATAAAT+TGG + chr1_1:8874716-8874735 None:intergenic 15.0%
!!! ATTTTTTTTCAATTTTTCCT+TGG - chr1_1:8874971-8874990 Msa0006110:intron 15.0%
!! GCTTATAATTTATATTTACA+AGG - chr1_1:8875078-8875097 Msa0006110:intron 15.0%
!!! TTTTTATATCAAGGGTTATT+AGG + chr1_1:8867331-8867350 None:intergenic 20.0%
!!! ATTTTTTCAGTTTTGAGATT+TGG - chr1_1:8867946-8867965 Msa0006110:CDS 20.0%
!! TTAAACTAAGAATTAACGAT+TGG - chr1_1:8868140-8868159 Msa0006110:intron 20.0%
!! CAAAAATAACTCATTTAAAC+AGG + chr1_1:8868592-8868611 None:intergenic 20.0%
!!! TTCAAGTACTGTAAAATTTT+AGG - chr1_1:8868620-8868639 Msa0006110:intron 20.0%
!! ATAAATAGATAATTCGGTTT+CGG + chr1_1:8868671-8868690 None:intergenic 20.0%
!! AACCGAATTATCTATTTATA+TGG - chr1_1:8868672-8868691 Msa0006110:CDS 20.0%
!!! AATTAGTTGTTTCACATAAA+AGG - chr1_1:8868819-8868838 Msa0006110:intron 20.0%
!! AAATTATATGCCTAATAGAT+GGG + chr1_1:8869461-8869480 None:intergenic 20.0%
!! TTCACAAACAATTTAATGAA+TGG + chr1_1:8869846-8869865 None:intergenic 20.0%
!! AATTTACAATTAACAACTCA+GGG + chr1_1:8869964-8869983 None:intergenic 20.0%
!! AAATTTACAATTAACAACTC+AGG + chr1_1:8869965-8869984 None:intergenic 20.0%
!!! TAATTGTAAATTTGTTTTGG+GGG - chr1_1:8869972-8869991 Msa0006110:intron 20.0%
!!! TATTGCATTTTTTTTCTTCT+TGG - chr1_1:8870319-8870338 Msa0006110:intron 20.0%
!! CATTAAAATTCAGAACTAAA+TGG + chr1_1:8871114-8871133 None:intergenic 20.0%
!!! CATTTAGTTCTGAATTTTAA+TGG - chr1_1:8871112-8871131 Msa0006110:intron 20.0%
!! TGAAAAATATAAGATGAAAC+AGG - chr1_1:8871267-8871286 Msa0006110:CDS 20.0%
!! TGAATTTCTTATAATTGTCA+TGG - chr1_1:8871725-8871744 Msa0006110:CDS 20.0%
!! AATGTTCATGTATATTTGAT+TGG - chr1_1:8871983-8872002 Msa0006110:intron 20.0%
!! ACAAAAAAAATATACCATGT+TGG + chr1_1:8873229-8873248 None:intergenic 20.0%
!!! ATTAGTCAATGACTTAATTT+TGG + chr1_1:8873252-8873271 None:intergenic 20.0%
!! TAATGATAAATATAGTTGTG+TGG - chr1_1:8874161-8874180 Msa0006110:intron 20.0%
!!! TTTTACTGAAATAAATTGGA+AGG + chr1_1:8874712-8874731 None:intergenic 20.0%
!! TTGTTTAGAAAACAGAAAAA+CGG - chr1_1:8875055-8875074 Msa0006110:intron 20.0%
!!! AAAGGCAACTTTTTTTTTTT+GGG - chr1_1:8875159-8875178 Msa0006110:intron 20.0%
!!! TTTTAACATGTGAAATTGAA+GGG + chr1_1:8875447-8875466 None:intergenic 20.0%
!! TGCAATTATTATTATAGACA+TGG + chr1_1:8875476-8875495 None:intergenic 20.0%
!! TCTTAAGTAAACAAAAACAA+CGG + chr1_1:8875566-8875585 None:intergenic 20.0%
!! GATGCAAAATAATTTAAAGA+TGG + chr1_1:8875617-8875636 None:intergenic 20.0%
!!! TTATTTTTCAATTCAACACA+AGG + chr1_1:8875851-8875870 None:intergenic 20.0%
!! AATCATAAAAACAAGTGAAT+GGG + chr1_1:8876054-8876073 None:intergenic 20.0%
!! TAATCATAAAAACAAGTGAA+TGG + chr1_1:8876055-8876074 None:intergenic 20.0%
!! TGAAGTTAGTAAAAAATCTA+AGG - chr1_1:8876309-8876328 Msa0006110:intron 20.0%
!!! TGTTAAGTATTTTTTAGGGT+TGG - chr1_1:8867789-8867808 Msa0006110:CDS 25.0%
! AATTAACGATTGGAAACTAA+CGG - chr1_1:8868150-8868169 Msa0006110:intron 25.0%
! TCTATTTATATGGAAAAACG+TGG - chr1_1:8868682-8868701 Msa0006110:CDS 25.0%
!!! ATTGGGATTCATTTTGATTT+TGG - chr1_1:8869332-8869351 Msa0006110:intron 25.0%
! GAAATTATATGCCTAATAGA+TGG + chr1_1:8869462-8869481 None:intergenic 25.0%
! GTAAAAAACCTTTCAAATAG+TGG + chr1_1:8870113-8870132 None:intergenic 25.0%
! AGCACATGTAATTAATGTTT+CGG + chr1_1:8870296-8870315 None:intergenic 25.0%
! AAAGTCAGAATTGTATACAA+CGG + chr1_1:8870851-8870870 None:intergenic 25.0%
! TAAACAGAGTTTATAAAGCT+TGG + chr1_1:8870960-8870979 None:intergenic 25.0%
!! AAGCTTTATAAACTCTGTTT+AGG - chr1_1:8870959-8870978 Msa0006110:CDS 25.0%
!!! GAAATTTGCTTTTGACTAAA+TGG - chr1_1:8871075-8871094 Msa0006110:CDS 25.0%
! TTAATGGCTGATATCATTAT+TGG - chr1_1:8871128-8871147 Msa0006110:intron 25.0%
!! TTTTGATGTATAACTGGATA+TGG - chr1_1:8871206-8871225 Msa0006110:CDS 25.0%
! TTTGATGTATAACTGGATAT+GGG - chr1_1:8871207-8871226 Msa0006110:CDS 25.0%
!! TTCTTTACACTATCTAAGAT+TGG + chr1_1:8871624-8871643 None:intergenic 25.0%
! TTCGTTTCATTCTTGTTAAT+AGG - chr1_1:8871670-8871689 Msa0006110:intron 25.0%
! TATACATGAACATTAAAGCA+CGG + chr1_1:8871977-8871996 None:intergenic 25.0%
!!! ATTTATTTTGTTTTTGGTCC+AGG - chr1_1:8872038-8872057 Msa0006110:intron 25.0%
!! CATGTCAATTTTTCTTGATT+AGG - chr1_1:8872187-8872206 Msa0006110:CDS 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_1:8872380-8872399 Msa0006110:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_1:8872384-8872403 None:intergenic 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_1:8872380-8872399 Msa0006110:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_1:8872384-8872403 None:intergenic 25.0%
!! ATTTGATTTCTTAGAAGGTT+TGG + chr1_1:8872642-8872661 None:intergenic 25.0%
!! ACAACATTTGATTTCTTAGA+AGG + chr1_1:8872647-8872666 None:intergenic 25.0%
!!! AGAAATAGGAACTTCTTTTT+TGG + chr1_1:8872711-8872730 None:intergenic 25.0%
!! ACTAATTTTGCAAATGCTTT+AGG - chr1_1:8873266-8873285 Msa0006110:CDS 25.0%
! TGTACTTACATATTATCATC+TGG + chr1_1:8873690-8873709 None:intergenic 25.0%
! GATGATAATATGTAAGTACA+TGG - chr1_1:8873690-8873709 Msa0006110:CDS 25.0%
! AAATTGCGGTATAATATATC+TGG - chr1_1:8874574-8874593 Msa0006110:intron 25.0%
! CTATATAACAAAACAGAAGT+AGG + chr1_1:8874739-8874758 None:intergenic 25.0%
! TAATAATTTCAGAGTCTGAT+CGG - chr1_1:8874880-8874899 Msa0006110:intron 25.0%
! TTACAATAATGTCATCTCAT+TGG - chr1_1:8874933-8874952 Msa0006110:intron 25.0%
!!! TGTTTTCATAGTTTTTTCCA+AGG + chr1_1:8874991-8875010 None:intergenic 25.0%
! TTGGAAAAAACTATGAAAAC+AGG - chr1_1:8874990-8875009 Msa0006110:intron 25.0%
! TGTTTAGAAAACAGAAAAAC+GGG - chr1_1:8875056-8875075 Msa0006110:intron 25.0%
! AGTTCTCTTAAAACAAAAAC+AGG - chr1_1:8875114-8875133 Msa0006110:intron 25.0%
!!! CAAAGGCAACTTTTTTTTTT+TGG - chr1_1:8875158-8875177 Msa0006110:intron 25.0%
!!! TTTTAGGTCTTATATGATGA+CGG - chr1_1:8875339-8875358 Msa0006110:intron 25.0%
! GGAAATATTGAATTTCAAAG+AGG - chr1_1:8875368-8875387 Msa0006110:intron 25.0%
!!! GTTTTAACATGTGAAATTGA+AGG + chr1_1:8875448-8875467 None:intergenic 25.0%
!! ATTGCAATTTTTCTCTTAAC+AGG - chr1_1:8875490-8875509 Msa0006110:intron 25.0%
!!! GTTTTGATGTATTCCTAATT+TGG - chr1_1:8875741-8875760 Msa0006110:intron 25.0%
! TACAATGTTTACAGAAATCT+TGG - chr1_1:8875803-8875822 Msa0006110:intron 25.0%
! TCTTCATATGATTTATTCTG+TGG - chr1_1:8875874-8875893 Msa0006110:intron 25.0%
! ATCAAAAAAGGAAGTAAAGA+AGG - chr1_1:8876118-8876137 Msa0006110:intron 25.0%
! TAAAGAAGGAATCTTCTAAA+AGG - chr1_1:8876132-8876151 Msa0006110:intron 25.0%
!! TTAGTGAATGTTGTTGATTA+AGG - chr1_1:8876155-8876174 Msa0006110:intron 25.0%
!! GAGTTATTAACCTTTTACTT+TGG - chr1_1:8876197-8876216 Msa0006110:intron 25.0%
!!! ATCTTTGGATTTCTTTGTTT+TGG + chr1_1:8876506-8876525 None:intergenic 25.0%
!! TTAAGAGTGTTCTTACAATC+AGG + chr1_1:8867554-8867573 None:intergenic 30.0%
TAACAAACTTCATGCAACAA+AGG + chr1_1:8867656-8867675 None:intergenic 30.0%
! TTTGTTGCATGAAGTTTGTT+AGG - chr1_1:8867655-8867674 Msa0006110:CDS 30.0%
!! TTGTTGCATGAAGTTTGTTA+GGG - chr1_1:8867656-8867675 Msa0006110:CDS 30.0%
CTCAAATATCAACGAAATTC+AGG + chr1_1:8867726-8867745 None:intergenic 30.0%
TCATATACATCAAACAGTTG+AGG + chr1_1:8867844-8867863 None:intergenic 30.0%
!!! CAGTTTTGAGATTTGGAATT+TGG - chr1_1:8867953-8867972 Msa0006110:CDS 30.0%
!! ATTTGGATAGTGGATTTGTT+AGG - chr1_1:8867970-8867989 Msa0006110:intron 30.0%
!! TTTGGATAGTGGATTTGTTA+GGG - chr1_1:8867971-8867990 Msa0006110:intron 30.0%
! ATTTGTTAGGGTTACTTTCA+TGG - chr1_1:8867983-8868002 Msa0006110:intron 30.0%
!! AACTGATTTGTATGCTGATA+TGG - chr1_1:8868091-8868110 Msa0006110:intron 30.0%
! ATGTACTACTAGGTGTTTTT+GGG - chr1_1:8868189-8868208 Msa0006110:intron 30.0%
TTGGGAATAAAGAACGATAA+AGG - chr1_1:8868207-8868226 Msa0006110:intron 30.0%
AAAGAACGATAAAGGAATGT+AGG - chr1_1:8868215-8868234 Msa0006110:intron 30.0%
!! ACAAACGACTAGTTTATGTA+AGG - chr1_1:8868241-8868260 Msa0006110:intron 30.0%
! TATTAGTTTAAGCACGTGTT+TGG + chr1_1:8868435-8868454 None:intergenic 30.0%
TCTTAGTTTAAGCACATGTT+TGG + chr1_1:8868520-8868539 None:intergenic 30.0%
TCATTTAAACAGGCTATGAA+AGG + chr1_1:8868582-8868601 None:intergenic 30.0%
AGGATGTTGAATACATTTCT+CGG - chr1_1:8868729-8868748 Msa0006110:intron 30.0%
GGAAATTGTTGGATATGAAA+AGG + chr1_1:8869032-8869051 None:intergenic 30.0%
TTTCATATCCAACAATTTCC+CGG - chr1_1:8869032-8869051 Msa0006110:intron 30.0%
TACAGAAAGCAATAAAGGAT+TGG + chr1_1:8869085-8869104 None:intergenic 30.0%
!! GTAGGCTTTTATTTGCAATT+GGG - chr1_1:8869315-8869334 Msa0006110:intron 30.0%
!! GCAAAAGCTCTAAAAAATGA+AGG - chr1_1:8869402-8869421 Msa0006110:CDS 30.0%
! TACCATAGTTACTTTAGTCT+TGG - chr1_1:8869889-8869908 Msa0006110:intron 30.0%
ATCCAAGACTAAAGTAACTA+TGG + chr1_1:8869894-8869913 None:intergenic 30.0%
!! TTACTTTAGTCTTGGATGTA+AGG - chr1_1:8869897-8869916 Msa0006110:intron 30.0%
!! AAACCTCGTTTAATTTTCGT+CGG - chr1_1:8870027-8870046 Msa0006110:intron 30.0%
AAAAACCTTTCAAATAGTGG+TGG + chr1_1:8870110-8870129 None:intergenic 30.0%
! TTTTACTAAATCACGAATCG+TGG - chr1_1:8870127-8870146 Msa0006110:intron 30.0%
AAATCATGGAGAAGTTATGT+AGG - chr1_1:8870252-8870271 Msa0006110:intron 30.0%
! TTATGTAGGTCTTATGACAA+TGG - chr1_1:8870266-8870285 Msa0006110:intron 30.0%
GCAATTAATGCTTTCAATGA+TGG + chr1_1:8870419-8870438 None:intergenic 30.0%
!!! TTATGTTGCCATTTTCTTTC+AGG - chr1_1:8870630-8870649 Msa0006110:intron 30.0%
AGCATTTCTTGAAGACAATA+AGG - chr1_1:8870812-8870831 Msa0006110:intron 30.0%
TTTCTTGAAGACAATAAGGT+AGG - chr1_1:8870816-8870835 Msa0006110:intron 30.0%
TTCTTGAAGACAATAAGGTA+GGG - chr1_1:8870817-8870836 Msa0006110:intron 30.0%
TTAAGATTGTATCATGTGTG+AGG + chr1_1:8871041-8871060 None:intergenic 30.0%
!! TTTGCTTTTGACTAAATGGA+AGG - chr1_1:8871079-8871098 Msa0006110:CDS 30.0%
!! TTGCTTTTGACTAAATGGAA+GGG - chr1_1:8871080-8871099 Msa0006110:CDS 30.0%
CCAGTTATACATCAAAAGAA+AGG + chr1_1:8871203-8871222 None:intergenic 30.0%
! CCTTTCTTTTGATGTATAAC+TGG - chr1_1:8871200-8871219 Msa0006110:CDS 30.0%
TAGTCATTGTATTCTTTGCA+CGG - chr1_1:8871243-8871262 Msa0006110:CDS 30.0%
CAAAATCATTTCACCTAATC+TGG + chr1_1:8871358-8871377 None:intergenic 30.0%
TAGTGTAAAGAAAGACAATG+AGG - chr1_1:8871632-8871651 Msa0006110:CDS 30.0%
TTCACAGCTTGCAATAAATT+GGG + chr1_1:8871837-8871856 None:intergenic 30.0%
ATTCACAGCTTGCAATAAAT+TGG + chr1_1:8871838-8871857 None:intergenic 30.0%
! GTCAATTTTTCTTGATTAGG+TGG - chr1_1:8872190-8872209 Msa0006110:CDS 30.0%
! AGTTCCTATTTCTCTTAATG+AGG - chr1_1:8872718-8872737 Msa0006110:intron 30.0%
CTATCCTCATTAAGAGAAAT+AGG + chr1_1:8872725-8872744 None:intergenic 30.0%
! AAGATTTCATCATCTAAAGC+AGG - chr1_1:8872794-8872813 Msa0006110:intron 30.0%
TGCAGAAGATATTTCGAAAA+AGG - chr1_1:8872934-8872953 Msa0006110:intron 30.0%
!! ATTCTAAAGTAAAACCAGCA+AGG - chr1_1:8872975-8872994 Msa0006110:intron 30.0%
AAAAAGAAGACACATGTGAA+AGG - chr1_1:8873100-8873119 Msa0006110:intron 30.0%
ATTCATTCATATCACCAACA+TGG - chr1_1:8873212-8873231 Msa0006110:intron 30.0%
! TTTGCAAATGCTTTAGGTAA+TGG - chr1_1:8873272-8873291 Msa0006110:CDS 30.0%
! AAAAATGAGCAAAGTCTTGT+TGG - chr1_1:8873642-8873661 Msa0006110:CDS 30.0%
ATTGAGAAAAGAAGAGATCT+CGG + chr1_1:8873717-8873736 None:intergenic 30.0%
!! AGTGTTCCTTTCATTTTAAC+TGG - chr1_1:8873792-8873811 Msa0006110:intron 30.0%
! ACCTATTTTGCAGTGTTTTT+AGG - chr1_1:8873985-8874004 Msa0006110:intron 30.0%
TCCTAAAAACACTGCAAAAT+AGG + chr1_1:8873989-8874008 None:intergenic 30.0%
!!! TGAGCTCACAATTTTTTTCT+TGG - chr1_1:8874285-8874304 Msa0006110:intron 30.0%
! AAAAGCTCTAATGAAATGCT+AGG - chr1_1:8874430-8874449 Msa0006110:intron 30.0%
! AAAGCTCTAATGAAATGCTA+GGG - chr1_1:8874431-8874450 Msa0006110:intron 30.0%
ATAAGTGAACAACATCAAGA+TGG + chr1_1:8874543-8874562 None:intergenic 30.0%
TATTCACCATGGTAAAATTG+CGG - chr1_1:8874560-8874579 Msa0006110:intron 30.0%
! ATTATACCGCAATTTTACCA+TGG + chr1_1:8874569-8874588 None:intergenic 30.0%
!! ATCTTCTGCAGGTTTTATAA+AGG - chr1_1:8874604-8874623 Msa0006110:intron 30.0%
!! GAACAGCTTACTTTTCAAAT+GGG + chr1_1:8874767-8874786 None:intergenic 30.0%
!! TGAACAGCTTACTTTTCAAA+TGG + chr1_1:8874768-8874787 None:intergenic 30.0%
AGTGAAAACAAGGTCATTAT+TGG + chr1_1:8875020-8875039 None:intergenic 30.0%
AAAACAAGACAGTGAAAACA+AGG + chr1_1:8875030-8875049 None:intergenic 30.0%
GATGAGATGAGATTAAGAAA+TGG - chr1_1:8875190-8875209 Msa0006110:intron 30.0%
CATATAAGACCTAAAACAGA+GGG + chr1_1:8875335-8875354 None:intergenic 30.0%
TCATATAAGACCTAAAACAG+AGG + chr1_1:8875336-8875355 None:intergenic 30.0%
! TTTTTCTCTTAACAGGAAGA+AGG - chr1_1:8875497-8875516 Msa0006110:intron 30.0%
TTGATGTATTCCTAATTTGG+TGG - chr1_1:8875744-8875763 Msa0006110:intron 30.0%
! ATTGTAGTTTGAGCTTTTAG+TGG + chr1_1:8875789-8875808 None:intergenic 30.0%
!!! AGCTTTTGCCTTTAGTTTTT+GGG - chr1_1:8875981-8876000 Msa0006110:intron 30.0%
AAAAAGCTCAGCTAGAAAAT+GGG + chr1_1:8876011-8876030 None:intergenic 30.0%
!!! AGCTTTTTGCCTTTAGTTTT+TGG - chr1_1:8876023-8876042 Msa0006110:intron 30.0%
!!! GCTTTTTGCCTTTAGTTTTT+GGG - chr1_1:8876024-8876043 Msa0006110:intron 30.0%
!!! GTTTTCCCTTTCTTTTTTAG+CGG + chr1_1:8876086-8876105 None:intergenic 30.0%
AAATGCTGGTGAATCAAAAA+AGG - chr1_1:8876106-8876125 Msa0006110:intron 30.0%
TGTTTCAACATCATCATCTT+TGG + chr1_1:8876521-8876540 None:intergenic 30.0%
CAACAAATTGAATTTCACCT+TGG + chr1_1:8876656-8876675 None:intergenic 30.0%
AAGAACGAAGGTTTCAACAA+TGG - chr1_1:8867437-8867456 Msa0006110:CDS 35.0%
AGTAGATTATCCACAGAAGA+AGG + chr1_1:8867525-8867544 None:intergenic 35.0%
CGATTTCTTCGTTAAATTCG+TGG - chr1_1:8867587-8867606 Msa0006110:CDS 35.0%
! GAGATTTGGAATTTGGATAG+TGG - chr1_1:8867960-8867979 Msa0006110:intron 35.0%
!! ATAGGTTGTTTTCCAACAAG+TGG - chr1_1:8868062-8868081 Msa0006110:intron 35.0%
!! TAGGTTGTTTTCCAACAAGT+GGG - chr1_1:8868063-8868082 Msa0006110:intron 35.0%
TGGAAACTAACGGTATATCT+TGG - chr1_1:8868160-8868179 Msa0006110:intron 35.0%
CTAACGGTATATCTTGGTAT+AGG - chr1_1:8868166-8868185 Msa0006110:intron 35.0%
TTGGTATAGGATGTACTACT+AGG - chr1_1:8868179-8868198 Msa0006110:intron 35.0%
! GATGTACTACTAGGTGTTTT+TGG - chr1_1:8868188-8868207 Msa0006110:intron 35.0%
!!! TTTTTGAGACACGTGCAAAA+AGG - chr1_1:8868373-8868392 Msa0006110:intron 35.0%
!!! TTTTGAGACACGTGCAAAAA+GGG - chr1_1:8868374-8868393 Msa0006110:intron 35.0%
TAAAATTTCGCCTGTTGTAG+TGG - chr1_1:8868785-8868804 Msa0006110:intron 35.0%
CAAATATCGCGATCTAACAT+GGG + chr1_1:8868932-8868951 None:intergenic 35.0%
TCAAATATCGCGATCTAACA+TGG + chr1_1:8868933-8868952 None:intergenic 35.0%
TGTTGGATATGAAAAGGCAA+AGG + chr1_1:8869026-8869045 None:intergenic 35.0%
AGAGCTACAGAAAGCAATAA+AGG + chr1_1:8869090-8869109 None:intergenic 35.0%
!! ACTGTTTTGTTCCTTATTCC+TGG - chr1_1:8869269-8869288 Msa0006110:intron 35.0%
TTTGTTCCTTATTCCTGGAT+TGG - chr1_1:8869274-8869293 Msa0006110:intron 35.0%
!! GGTAGGCTTTTATTTGCAAT+TGG - chr1_1:8869314-8869333 Msa0006110:intron 35.0%
! CGCACACACATATTTCATTT+TGG - chr1_1:8869625-8869644 Msa0006110:intron 35.0%
TGATTTCCTCCAACATAACA+CGG + chr1_1:8869768-8869787 None:intergenic 35.0%
CTATACCACCACTATTTGAA+AGG - chr1_1:8870102-8870121 Msa0006110:intron 35.0%
CTATACTACAACAGATTGAC+TGG + chr1_1:8870213-8870232 None:intergenic 35.0%
AAATTGAAAGCTGCCTATCA+AGG - chr1_1:8870351-8870370 Msa0006110:intron 35.0%
GTGATTGTTCAATCCTTGAT+AGG + chr1_1:8870367-8870386 None:intergenic 35.0%
GCATTTAGCATAGATTCAGA+AGG + chr1_1:8870389-8870408 None:intergenic 35.0%
TTCATTTGACCATCATCGTA+AGG + chr1_1:8870533-8870552 None:intergenic 35.0%
! TTACGATGATGGTCAAATGA+AGG - chr1_1:8870532-8870551 Msa0006110:intron 35.0%
AAAGACCTCCTGAAAGAAAA+TGG + chr1_1:8870641-8870660 None:intergenic 35.0%
! TTTTCTTTCAGGAGGTCTTT+AGG - chr1_1:8870641-8870660 Msa0006110:intron 35.0%
! TGACTTTTGCAACTGTTTCA+AGG + chr1_1:8870735-8870754 None:intergenic 35.0%
TTGAAACAGTTGCAAAAGTC+AGG - chr1_1:8870734-8870753 Msa0006110:CDS 35.0%
CTGAAACATCTCCAAAATGA+GGG + chr1_1:8870794-8870813 None:intergenic 35.0%
TCTTGAAGACAATAAGGTAG+GGG - chr1_1:8870818-8870837 Msa0006110:intron 35.0%
!! ACCATACAAGTCGATTTTGT+GGG + chr1_1:8870928-8870947 None:intergenic 35.0%
CTGTTTAGGCTTATATCTCT+AGG - chr1_1:8870973-8870992 Msa0006110:CDS 35.0%
AGTCATTGTATTCTTTGCAC+GGG - chr1_1:8871244-8871263 Msa0006110:CDS 35.0%
ACACACTTCTTCACACTAAT+AGG - chr1_1:8871332-8871351 Msa0006110:CDS 35.0%
! TTCTAGTTGCAGTGTATTTC+TGG - chr1_1:8871428-8871447 Msa0006110:CDS 35.0%
!! GTATTTCTGGTTTCTTTACC+TGG - chr1_1:8871441-8871460 Msa0006110:CDS 35.0%
! ATCTCCGTTTGAAACTTTCA+GGG - chr1_1:8871506-8871525 Msa0006110:CDS 35.0%
TGTTCCCTGAAAGTTTCAAA+CGG + chr1_1:8871513-8871532 None:intergenic 35.0%
! AGAAAATGTTTTCTCGTCCA+TGG - chr1_1:8871539-8871558 Msa0006110:intron 35.0%
GAGGATCATTATAGTTTCCA+TGG + chr1_1:8871559-8871578 None:intergenic 35.0%
GTAAAGAAAGACAATGAGGT+TGG - chr1_1:8871636-8871655 Msa0006110:CDS 35.0%
GAATACCTTGGGTATTTCTT+TGG - chr1_1:8871854-8871873 Msa0006110:intron 35.0%
ATCATCCAAAGAAATACCCA+AGG + chr1_1:8871862-8871881 None:intergenic 35.0%
TGATGTCTCTTTGCATATTG+AGG + chr1_1:8871901-8871920 None:intergenic 35.0%
CAAAGAGACATCAGATAACT+TGG - chr1_1:8871908-8871927 Msa0006110:intron 35.0%
! AATGATGTATGTGCTACTAG+TGG - chr1_1:8871936-8871955 Msa0006110:intron 35.0%
! TTGTTTACCCTTCAGCTTTT+GGG - chr1_1:8872155-8872174 Msa0006110:CDS 35.0%
TCATTATCCCAAAAGCTGAA+GGG + chr1_1:8872165-8872184 None:intergenic 35.0%
TTCATTATCCCAAAAGCTGA+AGG + chr1_1:8872166-8872185 None:intergenic 35.0%
AAGTCCCTTAAGAATCAAGA+TGG - chr1_1:8872338-8872357 Msa0006110:intron 35.0%
GGTACCATCTTGATTCTTAA+GGG + chr1_1:8872345-8872364 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_1:8872374-8872393 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_1:8872374-8872393 None:intergenic 35.0%
ATCAAATGTTGTCAGTGAGA+AGG - chr1_1:8872655-8872674 Msa0006110:intron 35.0%
!! TTTGTCATTCTCTGAAGTTC+CGG + chr1_1:8872762-8872781 None:intergenic 35.0%
! ATTTCATCATCTAAAGCAGG+TGG - chr1_1:8872797-8872816 Msa0006110:intron 35.0%
!! ATTTCGAAAAAGGTGTCTGA+AGG - chr1_1:8872944-8872963 Msa0006110:intron 35.0%
AAAATCTTCTGCTGAAGATG+AGG - chr1_1:8873144-8873163 Msa0006110:intron 35.0%
AACCAAAGATGAACATTCAG+AGG - chr1_1:8873323-8873342 Msa0006110:CDS 35.0%
!!! GTTCACACTTTTTCTTTTCC+TGG + chr1_1:8873384-8873403 None:intergenic 35.0%
! TTCATGATGCTTTGTCCTTT+TGG - chr1_1:8873439-8873458 Msa0006110:intron 35.0%
GCAAAAAGAACAGTTCCAAA+AGG + chr1_1:8873457-8873476 None:intergenic 35.0%
! CTGTTCTTTTTGCAGCTATA+TGG - chr1_1:8873464-8873483 Msa0006110:intron 35.0%
TTGGAAAACGAGTGAAAGTT+TGG - chr1_1:8873661-8873680 Msa0006110:CDS 35.0%
GAAAATCATTGAGAGAGAAG+AGG + chr1_1:8873749-8873768 None:intergenic 35.0%
TCAGTATGCACATGAAAGAA+TGG + chr1_1:8873825-8873844 None:intergenic 35.0%
CAACAGCAAACAAGTGTAAT+GGG + chr1_1:8873887-8873906 None:intergenic 35.0%
TCAGTTTCAGTCTCTATTTC+CGG - chr1_1:8874069-8874088 Msa0006110:intron 35.0%
TAAAAGCCAAAGCTAAGCTA+GGG + chr1_1:8874136-8874155 None:intergenic 35.0%
TTCATGTGTGCTATACAGTT+AGG - chr1_1:8874252-8874271 Msa0006110:intron 35.0%
AACATGGTCTCACTACAATA+AGG + chr1_1:8874362-8874381 None:intergenic 35.0%
TGTTGTTCACTTATTCACCA+TGG - chr1_1:8874549-8874568 Msa0006110:intron 35.0%
! TAAGAAGCACAAGGTGATTT+GGG - chr1_1:8874654-8874673 Msa0006110:intron 35.0%
TAAATTGGAAGGAGACAACA+GGG + chr1_1:8874701-8874720 None:intergenic 35.0%
ATAAATTGGAAGGAGACAAC+AGG + chr1_1:8874702-8874721 None:intergenic 35.0%
TCAGATGCAAGCAATATAGA+CGG + chr1_1:8875297-8875316 None:intergenic 35.0%
TTTGCATCAATGTTCGTAGT+TGG - chr1_1:8875629-8875648 Msa0006110:intron 35.0%
TTCAATTCAACACAAGGCAT+GGG + chr1_1:8875845-8875864 None:intergenic 35.0%
TTTCAATTCAACACAAGGCA+TGG + chr1_1:8875846-8875865 None:intergenic 35.0%
!!! GAGCTTTTGCCTTTAGTTTT+TGG - chr1_1:8875980-8875999 Msa0006110:intron 35.0%
CAAAAAGCTCAGCTAGAAAA+TGG + chr1_1:8876012-8876031 None:intergenic 35.0%
TTTAGGCCGCTAAAAAAGAA+AGG - chr1_1:8876077-8876096 Msa0006110:intron 35.0%
TTAGGCCGCTAAAAAAGAAA+GGG - chr1_1:8876078-8876097 Msa0006110:intron 35.0%
AAGAAAGGGAAAACAAATGC+TGG - chr1_1:8876092-8876111 Msa0006110:intron 35.0%
CACTGCTAAACCAAAGTAAA+AGG + chr1_1:8876210-8876229 None:intergenic 35.0%
!! CTTTTACTTTGGTTTAGCAG+TGG - chr1_1:8876208-8876227 Msa0006110:intron 35.0%
ATCAGATTTGCCAACAATCT+TGG + chr1_1:8876287-8876306 None:intergenic 35.0%
AAGATTGTTGGCAAATCTGA+TGG - chr1_1:8876286-8876305 Msa0006110:intron 35.0%
AAGGATTCTGCACAAAAAAC+TGG - chr1_1:8876328-8876347 Msa0006110:intron 35.0%
AAAAACTGGTGGTAAATCTG+AGG - chr1_1:8876342-8876361 Msa0006110:intron 35.0%
AACAATTCCAAGAAGACTGA+TGG - chr1_1:8876478-8876497 Msa0006110:intron 35.0%
! AAGCAAGAAACTCTGAAAAG+TGG - chr1_1:8876565-8876584 Msa0006110:CDS 35.0%
! AGCAAGAAACTCTGAAAAGT+GGG - chr1_1:8876566-8876585 Msa0006110:CDS 35.0%
!! GGTGAAATTCAATTTGTTGC+AGG - chr1_1:8876657-8876676 Msa0006110:five_prime_UTR 35.0%
CTCTGATGATTCATCAAAAG+AGG - chr1_1:8876702-8876721 Msa0006110:five_prime_UTR 35.0%
TAAGACACCAAGTTCTTCAA+AGG - chr1_1:8876741-8876760 Msa0006110:five_prime_UTR 35.0%
AACAATGGCTTCCATCGATA+AGG - chr1_1:8867452-8867471 Msa0006110:CDS 40.0%
AGATTATCCACAGAAGAAGG+AGG + chr1_1:8867522-8867541 None:intergenic 40.0%
! TTGAATATGCTGACTACCCA+GGG - chr1_1:8868018-8868037 Msa0006110:intron 40.0%
!! AGGTTGTTTTCCAACAAGTG+GGG - chr1_1:8868064-8868083 Msa0006110:intron 40.0%
!!! TCAGTTTTTTCCCCACTTGT+TGG + chr1_1:8868077-8868096 None:intergenic 40.0%
TTAAGCACGTGTTTGGTTGT+GGG + chr1_1:8868428-8868447 None:intergenic 40.0%
TTTAAGCACGTGTTTGGTTG+TGG + chr1_1:8868429-8868448 None:intergenic 40.0%
CACATGTTTGGTTGTGTAGT+AGG + chr1_1:8868508-8868527 None:intergenic 40.0%
GGGCAGGAAATCATTTACTT+GGG + chr1_1:8868966-8868985 None:intergenic 40.0%
TATGAAAAGGCAAAGGTCGA+CGG + chr1_1:8869019-8869038 None:intergenic 40.0%
! ATTGCGCTACTTTGCAAAGT+AGG + chr1_1:8869125-8869144 None:intergenic 40.0%
TGCAAAGTAGCGCAATGAAA+TGG - chr1_1:8869129-8869148 Msa0006110:intron 40.0%
CGCAATGAAATGGAAGAGAA+TGG - chr1_1:8869139-8869158 Msa0006110:intron 40.0%
GCTTTAATTGACTGAGCACA+TGG + chr1_1:8869359-8869378 None:intergenic 40.0%
TGCTCAGTCAATTAAAGCGT+GGG - chr1_1:8869361-8869380 Msa0006110:intron 40.0%
! TTAAAGCGTGGGCTCTTTTA+TGG - chr1_1:8869372-8869391 Msa0006110:intron 40.0%
! TGGGCTCTTTTATGGTAAAG+AGG - chr1_1:8869380-8869399 Msa0006110:intron 40.0%
GCCTAATAGATGGGTCATAT+GGG + chr1_1:8869452-8869471 None:intergenic 40.0%
TGCCTAATAGATGGGTCATA+TGG + chr1_1:8869453-8869472 None:intergenic 40.0%
GTTATGTTGGAGGAAATCAG+TGG - chr1_1:8869769-8869788 Msa0006110:intron 40.0%
ACACCGACGAAAATTAAACG+AGG + chr1_1:8870033-8870052 None:intergenic 40.0%
CTATTTACTGCAATCCGAGA+TGG + chr1_1:8870059-8870078 None:intergenic 40.0%
TCTCGGATTGCAGTAAATAG+TGG - chr1_1:8870059-8870078 Msa0006110:intron 40.0%
CAAATAGTGGTGGTATAGCA+TGG + chr1_1:8870100-8870119 None:intergenic 40.0%
ATCACGAATCGTGGAACAAT+AGG - chr1_1:8870136-8870155 Msa0006110:intron 40.0%
TCACGAATCGTGGAACAATA+GGG - chr1_1:8870137-8870156 Msa0006110:intron 40.0%
! AACAGATTGACTGGTTCACA+GGG + chr1_1:8870204-8870223 None:intergenic 40.0%
! TCTTGTTATCTCACTGAAGC+AGG + chr1_1:8870492-8870511 None:intergenic 40.0%
!!! TGTTGCCATTTTCTTTCAGG+AGG - chr1_1:8870633-8870652 Msa0006110:intron 40.0%
TACATGATAAGTCAAGCCGA+TGG - chr1_1:8870689-8870708 Msa0006110:CDS 40.0%
AAGTCCTCTTTGAGTACCAT+CGG + chr1_1:8870708-8870727 None:intergenic 40.0%
GCTGAAACATCTCCAAAATG+AGG + chr1_1:8870795-8870814 None:intergenic 40.0%
! CGATTTTGTGGGATCAAGTT+CGG + chr1_1:8870917-8870936 None:intergenic 40.0%
!! TCCCACAAAATCGACTTGTA+TGG - chr1_1:8870924-8870943 Msa0006110:CDS 40.0%
!! CACCATACAAGTCGATTTTG+TGG + chr1_1:8870929-8870948 None:intergenic 40.0%
! GCTTATATCTCTAGGAGATG+TGG - chr1_1:8870981-8871000 Msa0006110:CDS 40.0%
AAGAAAGGATAGCGTACAAC+AGG + chr1_1:8871188-8871207 None:intergenic 40.0%
TCACACTAATAGGCCAGATT+AGG - chr1_1:8871342-8871361 Msa0006110:CDS 40.0%
!! TTCTGGTTTCTTTACCTGGT+TGG - chr1_1:8871445-8871464 Msa0006110:CDS 40.0%
GGATGCAAAATGTGTGAACA+TGG - chr1_1:8871475-8871494 Msa0006110:CDS 40.0%
! CATCTCCGTTTGAAACTTTC+AGG - chr1_1:8871505-8871524 Msa0006110:CDS 40.0%
CTTCACTTTCTTCAAGACAG+AGG + chr1_1:8871578-8871597 None:intergenic 40.0%
!! AAGACAATGAGGTTGGTGTT+TGG - chr1_1:8871643-8871662 Msa0006110:CDS 40.0%
TTTGCCAATTGCTCGAAAGT+TGG - chr1_1:8871773-8871792 Msa0006110:CDS 40.0%
TTGCCAATTGCTCGAAAGTT+GGG - chr1_1:8871774-8871793 Msa0006110:CDS 40.0%
TCCTTGAAAGTTGTGCAACA+AGG - chr1_1:8871805-8871824 Msa0006110:CDS 40.0%
ATTGCAAGCTGTGAATACCT+TGG - chr1_1:8871842-8871861 Msa0006110:intron 40.0%
TTGCAAGCTGTGAATACCTT+GGG - chr1_1:8871843-8871862 Msa0006110:intron 40.0%
! GTTGTTTACCCTTCAGCTTT+TGG - chr1_1:8872154-8872173 Msa0006110:CDS 40.0%
! ATTATCTTGTTGTGGTGGTG+TGG + chr1_1:8872237-8872256 None:intergenic 40.0%
CGGTACCATCTTGATTCTTA+AGG + chr1_1:8872346-8872365 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_1:8872403-8872422 Msa0006110:intron 40.0%
AGTACCATCAAGAAGCAAGA+TGG - chr1_1:8872467-8872486 Msa0006110:CDS 40.0%
AGTACCATCTTGCTTCTTGA+TGG + chr1_1:8872474-8872493 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_1:8872403-8872422 Msa0006110:intron 40.0%
! GATAGTGTTGTTGAAGCTAC+CGG - chr1_1:8872740-8872759 Msa0006110:intron 40.0%
!! AAAGGTGTCTGAAGGAACAT+CGG - chr1_1:8872952-8872971 Msa0006110:intron 40.0%
TTCACATCAGAGCTACGAAT+GGG + chr1_1:8873019-8873038 None:intergenic 40.0%
TTTCACATCAGAGCTACGAA+TGG + chr1_1:8873020-8873039 None:intergenic 40.0%
AACTGTTGTACACGCAGTTA+TGG - chr1_1:8873039-8873058 Msa0006110:intron 40.0%
! GTCTTCTTTTTCTTGTCCTC+CGG + chr1_1:8873091-8873110 None:intergenic 40.0%
TGTGAAAGGTAGCTCAGAAA+AGG - chr1_1:8873114-8873133 Msa0006110:intron 40.0%
GTGAAAGGTAGCTCAGAAAA+GGG - chr1_1:8873115-8873134 Msa0006110:intron 40.0%
TTCTGCTGAAGATGAGGATA+AGG - chr1_1:8873150-8873169 Msa0006110:intron 40.0%
CTCCTCTGAATGTTCATCTT+TGG + chr1_1:8873328-8873347 None:intergenic 40.0%
TTCCTCTTCAGAGTTGTCTT+AGG + chr1_1:8873354-8873373 None:intergenic 40.0%
TTTCTTGATATCAGACCCCT+GGG + chr1_1:8873625-8873644 None:intergenic 40.0%
! TTTTCTTGATATCAGACCCC+TGG + chr1_1:8873626-8873645 None:intergenic 40.0%
GAAAACGAGTGAAAGTTTGG+TGG - chr1_1:8873664-8873683 Msa0006110:CDS 40.0%
AAAGGAACACTGAATGCCAT+GGG + chr1_1:8873783-8873802 None:intergenic 40.0%
! GTGGTGCCAGTTAAAATGAA+AGG + chr1_1:8873801-8873820 None:intergenic 40.0%
ATGCACATGAAAGAATGGAG+TGG + chr1_1:8873820-8873839 None:intergenic 40.0%
ACATTGAGTGAACTTCAGTG+AGG + chr1_1:8873848-8873867 None:intergenic 40.0%
GCAACAGCAAACAAGTGTAA+TGG + chr1_1:8873888-8873907 None:intergenic 40.0%
!! ACACTTGTTTGCTGTTGCAT+AGG - chr1_1:8873890-8873909 Msa0006110:intron 40.0%
!! CACTTGTTTGCTGTTGCATA+GGG - chr1_1:8873891-8873910 Msa0006110:intron 40.0%
TGCTGTTGCATAGGGTTATA+TGG - chr1_1:8873899-8873918 Msa0006110:intron 40.0%
TACTTGGAATCAGCCAAATC+AGG + chr1_1:8873929-8873948 None:intergenic 40.0%
! AAGTAGTTCTCCCCTGTTTT+GGG - chr1_1:8873944-8873963 Msa0006110:intron 40.0%
CTTACTATCTCCCAAAACAG+GGG + chr1_1:8873957-8873976 None:intergenic 40.0%
GCTTACTATCTCCCAAAACA+GGG + chr1_1:8873958-8873977 None:intergenic 40.0%
TGCTTACTATCTCCCAAAAC+AGG + chr1_1:8873959-8873978 None:intergenic 40.0%
!!! TGTTTTTAGGAAGCTCCTAG+TGG - chr1_1:8873998-8874017 Msa0006110:intron 40.0%
! AGTCTCTATTTCCGGCATTT+TGG - chr1_1:8874077-8874096 Msa0006110:intron 40.0%
! GTCTCTATTTCCGGCATTTT+GGG - chr1_1:8874078-8874097 Msa0006110:intron 40.0%
! TTTTGTCCCTAGCTTAGCTT+TGG - chr1_1:8874127-8874146 Msa0006110:intron 40.0%
CTAAAAGCCAAAGCTAAGCT+AGG + chr1_1:8874137-8874156 None:intergenic 40.0%
!!! CTAGCTTAGCTTTGGCTTTT+AGG - chr1_1:8874135-8874154 Msa0006110:intron 40.0%
TCTAATGAAATGCTAGGGCT+AGG - chr1_1:8874436-8874455 Msa0006110:intron 40.0%
CTAATGAAATGCTAGGGCTA+GGG - chr1_1:8874437-8874456 Msa0006110:intron 40.0%
! TTCTTCCACTAAGAAGCACA+AGG - chr1_1:8874645-8874664 Msa0006110:intron 40.0%
AATCACCTTGTGCTTCTTAG+TGG + chr1_1:8874653-8874672 None:intergenic 40.0%
! CTAAGAAGCACAAGGTGATT+TGG - chr1_1:8874653-8874672 Msa0006110:intron 40.0%
! TCTACTTGTCCCTCTGTTTT+AGG - chr1_1:8875323-8875342 Msa0006110:intron 40.0%
ACATATCAGCAGAAGGTTCA+GGG + chr1_1:8875538-8875557 None:intergenic 40.0%
TACATATCAGCAGAAGGTTC+AGG + chr1_1:8875539-8875558 None:intergenic 40.0%
GGAACATACATATCAGCAGA+AGG + chr1_1:8875545-8875564 None:intergenic 40.0%
AGGCAGAATTCCACCAAATT+AGG + chr1_1:8875757-8875776 None:intergenic 40.0%
! GCTTTTAGTGGCACAAATCA+AGG + chr1_1:8875777-8875796 None:intergenic 40.0%
! TCTCATTTTGCCTGACCAAT+TGG - chr1_1:8875926-8875945 Msa0006110:intron 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_1:8875992-8876011 None:intergenic 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_1:8875992-8876011 None:intergenic 40.0%
! TTACTTTGGTTTAGCAGTGG+AGG - chr1_1:8876211-8876230 Msa0006110:intron 40.0%
!! TTTTGGGTAGACTTTGCAGA+TGG + chr1_1:8876262-8876281 None:intergenic 40.0%
ACCCAAAAGTCCAAGATTGT+TGG - chr1_1:8876274-8876293 Msa0006110:intron 40.0%
! GCCAACAATCTTGGACTTTT+GGG + chr1_1:8876278-8876297 None:intergenic 40.0%
! TGCCAACAATCTTGGACTTT+TGG + chr1_1:8876279-8876298 None:intergenic 40.0%
GATTCTGCACAAAAAACTGG+TGG - chr1_1:8876331-8876350 Msa0006110:intron 40.0%
! TTTGGAACCATCAGTCTTCT+TGG + chr1_1:8876488-8876507 None:intergenic 40.0%
CAGAGTTTCTTGCTTAGACT+TGG + chr1_1:8876560-8876579 None:intergenic 40.0%
AAAAGTGGGAAATCCAAGCA+AGG - chr1_1:8876580-8876599 Msa0006110:CDS 40.0%
AATCTTAGGTGTTCCTTGCT+TGG + chr1_1:8876596-8876615 None:intergenic 40.0%
TTGGAGGAAGATGCAATCTT+AGG + chr1_1:8876610-8876629 None:intergenic 40.0%
!!! ACTCTTGGTGGATTTTGTCT+TGG + chr1_1:8876629-8876648 None:intergenic 40.0%
! GCGAGATCCGATTTTCACTA+TGG - chr1_1:8867253-8867272 Msa0006110:CDS 45.0%
ACAAGATCTGCGAAGAACGA+AGG - chr1_1:8867425-8867444 Msa0006110:CDS 45.0%
CTCTTCAAGCTCCTTATCGA+TGG + chr1_1:8867466-8867485 None:intergenic 45.0%
CATCGATAAGGAGCTTGAAG+AGG - chr1_1:8867464-8867483 Msa0006110:CDS 45.0%
TCTAGATCCTCCTTCTTCTG+TGG - chr1_1:8867512-8867531 Msa0006110:CDS 45.0%
! CTTGAATATGCTGACTACCC+AGG - chr1_1:8868017-8868036 Msa0006110:intron 45.0%
CAAAAAGGGCTGTAAACACG+TGG - chr1_1:8868388-8868407 Msa0006110:intron 45.0%
TAAGCACGTGTTTGGTTGTG+GGG + chr1_1:8868427-8868446 None:intergenic 45.0%
ACACGTGTAAAAAGAGCCGT+AGG - chr1_1:8868466-8868485 Msa0006110:intron 45.0%
ACATATCACGCCACTACAAC+AGG + chr1_1:8868798-8868817 None:intergenic 45.0%
GGGGCAGGAAATCATTTACT+TGG + chr1_1:8868967-8868986 None:intergenic 45.0%
GACTCTCCATTACAGTTTGG+GGG + chr1_1:8868997-8869016 None:intergenic 45.0%
GGACTCTCCATTACAGTTTG+GGG + chr1_1:8868998-8869017 None:intergenic 45.0%
CGGACTCTCCATTACAGTTT+GGG + chr1_1:8868999-8869018 None:intergenic 45.0%
ACGGACTCTCCATTACAGTT+TGG + chr1_1:8869000-8869019 None:intergenic 45.0%
TTTACTGGCCGGGAAATTGT+TGG + chr1_1:8869043-8869062 None:intergenic 45.0%
AGAACCAGCAATTTACTGGC+CGG + chr1_1:8869054-8869073 None:intergenic 45.0%
GTCGAGAACCAGCAATTTAC+TGG + chr1_1:8869058-8869077 None:intergenic 45.0%
! GCTTTCTGTAGCTCTGTTTC+TGG - chr1_1:8869095-8869114 Msa0006110:intron 45.0%
! CTTTCCAAACACAAGTGCTG+TGG - chr1_1:8869195-8869214 Msa0006110:intron 45.0%
GACTCACCAATCCAGGAATA+AGG + chr1_1:8869283-8869302 None:intergenic 45.0%
!! TATTCCTGGATTGGTGAGTC+TGG - chr1_1:8869283-8869302 Msa0006110:intron 45.0%
!! ATTCCTGGATTGGTGAGTCT+GGG - chr1_1:8869284-8869303 Msa0006110:intron 45.0%
ATTGGTGAGTCTGGGAAGTT+AGG - chr1_1:8869292-8869311 Msa0006110:intron 45.0%
TTGGTGAGTCTGGGAAGTTA+GGG - chr1_1:8869293-8869312 Msa0006110:intron 45.0%
GTGCTCAGTCAATTAAAGCG+TGG - chr1_1:8869360-8869379 Msa0006110:intron 45.0%
GCCCATATGACCCATCTATT+AGG - chr1_1:8869448-8869467 Msa0006110:intron 45.0%
AACCCTACCTAACTTCGAGA+GGG + chr1_1:8869676-8869695 None:intergenic 45.0%
AAACCCTACCTAACTTCGAG+AGG + chr1_1:8869677-8869696 None:intergenic 45.0%
CTCCTTGATCCGTGTTATGT+TGG - chr1_1:8869756-8869775 Msa0006110:intron 45.0%
CTCCAACATAACACGGATCA+AGG + chr1_1:8869761-8869780 None:intergenic 45.0%
CTTGATCCGTGTTATGTTGG+AGG - chr1_1:8869759-8869778 Msa0006110:intron 45.0%
GGAGGAAATCAGTGGTATGT+TGG - chr1_1:8869777-8869796 Msa0006110:intron 45.0%
GGAAATCAGTGGTATGTTGG+AGG - chr1_1:8869780-8869799 Msa0006110:intron 45.0%
ATAGTGGTGGTATAGCATGG+CGG + chr1_1:8870097-8870116 None:intergenic 45.0%
CACGAATCGTGGAACAATAG+GGG - chr1_1:8870138-8870157 Msa0006110:intron 45.0%
TTCACAGGGAAACTCAGTAG+CGG + chr1_1:8870190-8870209 None:intergenic 45.0%
! CAACAGATTGACTGGTTCAC+AGG + chr1_1:8870205-8870224 None:intergenic 45.0%
TGTTATCTCACTGAAGCAGG+AGG + chr1_1:8870489-8870508 None:intergenic 45.0%
TGCAAAAGTCAGGTCATGTG+TGG - chr1_1:8870744-8870763 Msa0006110:CDS 45.0%
! TGAATGCGATGCCCTCATTT+TGG - chr1_1:8870780-8870799 Msa0006110:intron 45.0%
! TCGACTTGTATGGTGAGCAT+TGG - chr1_1:8870934-8870953 Msa0006110:CDS 45.0%
! TCTCTAGGAGATGTGGAACT+CGG - chr1_1:8870988-8871007 Msa0006110:CDS 45.0%
!! CTTTACCTGGTTGGACTAGT+TGG - chr1_1:8871454-8871473 Msa0006110:CDS 45.0%
TGCTGTCATCATGATTCAGG+AGG - chr1_1:8871749-8871768 Msa0006110:CDS 45.0%
TGCCAATTGCTCGAAAGTTG+GGG - chr1_1:8871775-8871794 Msa0006110:CDS 45.0%
! GCCTTGTTGCACAACTTTCA+AGG + chr1_1:8871809-8871828 None:intergenic 45.0%
! ATGTGCTACTAGTGGTCATG+TGG - chr1_1:8871944-8871963 Msa0006110:intron 45.0%
! CTGATTTGCGATCATGTACC+TGG + chr1_1:8872059-8872078 None:intergenic 45.0%
TGATCGCAAATCAGCAGAAG+AGG - chr1_1:8872065-8872084 Msa0006110:intron 45.0%
! GCAGCATTATCTTGTTGTGG+TGG + chr1_1:8872242-8872261 None:intergenic 45.0%
CCAGCAGCATTATCTTGTTG+TGG + chr1_1:8872245-8872264 None:intergenic 45.0%
CCACAACAAGATAATGCTGC+TGG - chr1_1:8872242-8872261 Msa0006110:CDS 45.0%
CCATTGCTCATGACAGACTT+GGG + chr1_1:8872278-8872297 None:intergenic 45.0%
TTTGGACAGAACAGGAGAGT+CGG + chr1_1:8872366-8872385 None:intergenic 45.0%
CGACAGTAAAGAACCAAAGC+TGG - chr1_1:8872568-8872587 Msa0006110:intron 45.0%
CTGGTACTTCTTTCCAGCTT+TGG + chr1_1:8872584-8872603 None:intergenic 45.0%
!! CAAAGCTGGAAAGAAGTACC+AGG - chr1_1:8872453-8872472 Msa0006110:CDS 45.0%
!! GAAAGAAGTACCAGGAGGAA+AGG - chr1_1:8872590-8872609 Msa0006110:intron 45.0%
AGCTTTCTTTCCTTTCCTCC+TGG + chr1_1:8872603-8872622 None:intergenic 45.0%
AACCAACAGCGTCAGATTCA+AGG + chr1_1:8872823-8872842 None:intergenic 45.0%
ATCGTGATTGCTCTCACTTG+GGG + chr1_1:8872852-8872871 None:intergenic 45.0%
CATCGTGATTGCTCTCACTT+GGG + chr1_1:8872853-8872872 None:intergenic 45.0%
TCATCGTGATTGCTCTCACT+TGG + chr1_1:8872854-8872873 None:intergenic 45.0%
AGTAAAACCAGCAAGGCCAT+CGG - chr1_1:8872982-8873001 Msa0006110:intron 45.0%
!!! ATGGGTCCTTTTTTTGCCGA+TGG + chr1_1:8873001-8873020 None:intergenic 45.0%
ACGCAGTTATGGCTGATGTT+GGG - chr1_1:8873050-8873069 Msa0006110:intron 45.0%
! CTCCTAAGACAACTCTGAAG+AGG - chr1_1:8873349-8873368 Msa0006110:CDS 45.0%
ATCTTCTGACTGTTGTCCCA+GGG - chr1_1:8873606-8873625 Msa0006110:CDS 45.0%
! TTTTCTGTCTCCTAGACCCA+TGG - chr1_1:8873764-8873783 Msa0006110:intron 45.0%
GAAAGGAACACTGAATGCCA+TGG + chr1_1:8873784-8873803 None:intergenic 45.0%
GTTATATGGCCCACCTGATT+TGG - chr1_1:8873913-8873932 Msa0006110:intron 45.0%
TGGAATCAGCCAAATCAGGT+GGG + chr1_1:8873925-8873944 None:intergenic 45.0%
TTGGAATCAGCCAAATCAGG+TGG + chr1_1:8873926-8873945 None:intergenic 45.0%
CAAAACAGGGGAGAACTACT+TGG + chr1_1:8873945-8873964 None:intergenic 45.0%
! CAAGTAGTTCTCCCCTGTTT+TGG - chr1_1:8873943-8873962 Msa0006110:intron 45.0%
CCAAAGAAATGTGAGCCACT+AGG + chr1_1:8874016-8874035 None:intergenic 45.0%
CCTAGTGGCTCACATTTCTT+TGG - chr1_1:8874013-8874032 Msa0006110:intron 45.0%
TGCAGAGGCAAAAACAGAAC+AGG + chr1_1:8874047-8874066 None:intergenic 45.0%
AGACTGAAACTGAAGTGCAG+AGG + chr1_1:8874062-8874081 None:intergenic 45.0%
TCATTCATCCAGCCTTAGCT+TGG + chr1_1:8874104-8874123 None:intergenic 45.0%
GAGACAACAGGGTAAAGTGA+AGG + chr1_1:8874690-8874709 None:intergenic 45.0%
!! CAGAGTCTGATCGGTTTTGT+TGG - chr1_1:8874889-8874908 Msa0006110:intron 45.0%
!! CTTATATGATGACGGTGACG+AGG - chr1_1:8875347-8875366 Msa0006110:intron 45.0%
! AGTTGATGCTGATCCAGATG+TGG - chr1_1:8875410-8875429 Msa0006110:intron 45.0%
GCATCAATGTTCGTAGTTGG+TGG - chr1_1:8875632-8875651 Msa0006110:intron 45.0%
CTGCAACTATGACCACAAGA+GGG + chr1_1:8875663-8875682 None:intergenic 45.0%
! CATTTTGCCTGACCAATTGG+TGG - chr1_1:8875929-8875948 Msa0006110:intron 45.0%
GAGGATCGTTCTGTGAAAAG+CGG - chr1_1:8876361-8876380 Msa0006110:intron 45.0%
GAAAAGCGGTGGTAAATCTG+AGG - chr1_1:8876375-8876394 Msa0006110:intron 45.0%
GAGGATCGTTCTGTGAAAAG+TGG - chr1_1:8876361-8876380 Msa0006110:intron 45.0%
GATCGTTCTGTGAAAAGTGG+TGG - chr1_1:8876397-8876416 Msa0006110:intron 45.0%
GAAAAGTGGTGGTAAGTCTG+AGG - chr1_1:8876408-8876427 Msa0006110:intron 45.0%
GAGGATCGATCTGTGAAAAG+TGG - chr1_1:8876427-8876446 Msa0006110:intron 45.0%
!!! CTTGGTGGATTTTGTCTTGG+AGG + chr1_1:8876626-8876645 None:intergenic 45.0%
TTTCACCTTGGCAGTACTCT+TGG + chr1_1:8876644-8876663 None:intergenic 45.0%
ACACCAAGTTCTTCAAAGGC+CGG - chr1_1:8876745-8876764 Msa0006110:five_prime_UTR 45.0%
!!! ATTAAAGTATTATTTTTAAA+TGG - chr1_1:8875257-8875276 Msa0006110:intron 5.0%
GGGCGCTCCATAGTGAAAAT+CGG + chr1_1:8867263-8867282 None:intergenic 50.0%
GAGCTTGAAGAGGAGCTTCT+TGG - chr1_1:8867474-8867493 Msa0006110:CDS 50.0%
! ATATGCTGACTACCCAGGGT+TGG - chr1_1:8868022-8868041 Msa0006110:intron 50.0%
!! GATGTCGGCGTTGACTGAAT+AGG - chr1_1:8868044-8868063 Msa0006110:intron 50.0%
CTCAGAAAAACGCGCGTCTA+GGG + chr1_1:8868303-8868322 None:intergenic 50.0%
TAAAAAGAGCCGTAGGCACG+TGG - chr1_1:8868473-8868492 Msa0006110:intron 50.0%
GATCGAACTCCTTCAAGGTG+CGG + chr1_1:8868874-8868893 None:intergenic 50.0%
ACTGCGATCGAACTCCTTCA+AGG + chr1_1:8868879-8868898 None:intergenic 50.0%
TCCATTACAGTTTGGGGGTG+GGG + chr1_1:8868992-8869011 None:intergenic 50.0%
CTCCATTACAGTTTGGGGGT+GGG + chr1_1:8868993-8869012 None:intergenic 50.0%
TCTCCATTACAGTTTGGGGG+TGG + chr1_1:8868994-8869013 None:intergenic 50.0%
TTTCCCGGCCAGTAAATTGC+TGG - chr1_1:8869047-8869066 Msa0006110:intron 50.0%
GAACCAGCAATTTACTGGCC+GGG + chr1_1:8869053-8869072 None:intergenic 50.0%
GGTAGACGCAAGTGCATTTG+TGG - chr1_1:8869160-8869179 Msa0006110:intron 50.0%
! TCCAAACACAAGTGCTGTGG+CGG - chr1_1:8869198-8869217 Msa0006110:intron 50.0%
TGAGTCTGGGAAGTTAGGGT+AGG - chr1_1:8869297-8869316 Msa0006110:intron 50.0%
ACCCTACCTAACTTCGAGAG+GGG + chr1_1:8869675-8869694 None:intergenic 50.0%
!! TTCGTCGGTGTTGTCCATCT+CGG - chr1_1:8870042-8870061 Msa0006110:intron 50.0%
!! CCATCATCGTAAGGAGCATC+AGG + chr1_1:8870524-8870543 None:intergenic 50.0%
CCTGATGCTCCTTACGATGA+TGG - chr1_1:8870521-8870540 Msa0006110:intron 50.0%
CAAGCCGATGGTACTCAAAG+AGG - chr1_1:8870701-8870720 Msa0006110:CDS 50.0%
! CAGGTCATGTGTGGTAATGC+TGG - chr1_1:8870753-8870772 Msa0006110:CDS 50.0%
! CTCTAGGAGATGTGGAACTC+GGG - chr1_1:8870989-8871008 Msa0006110:CDS 50.0%
TGCATCCAACTAGTCCAACC+AGG + chr1_1:8871462-8871481 None:intergenic 50.0%
GGCTGCTGTCATCATGATTC+AGG - chr1_1:8871746-8871765 Msa0006110:CDS 50.0%
GCCAATTGCTCGAAAGTTGG+GGG - chr1_1:8871776-8871795 Msa0006110:CDS 50.0%
TCCCCCAACTTTCGAGCAAT+TGG + chr1_1:8871780-8871799 None:intergenic 50.0%
CCCAAGTCTGTCATGAGCAA+TGG - chr1_1:8872275-8872294 Msa0006110:intron 50.0%
GCCATTGCTCATGACAGACT+TGG + chr1_1:8872279-8872298 None:intergenic 50.0%
CATGAGCAATGGCATTGCAC+AGG - chr1_1:8872286-8872305 Msa0006110:intron 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_1:8872365-8872384 Msa0006110:intron 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_1:8872365-8872384 Msa0006110:intron 50.0%
!! AGCTGGAAAGAAGTACCAGG+AGG - chr1_1:8872585-8872604 Msa0006110:intron 50.0%
TGATTGCTCTCACTTGGGGA+AGG + chr1_1:8872848-8872867 None:intergenic 50.0%
! CGATAGCTCTGCGAAAGAAG+TGG - chr1_1:8872910-8872929 Msa0006110:intron 50.0%
!!! TTTTTTGCCGATGGCCTTGC+TGG + chr1_1:8872992-8873011 None:intergenic 50.0%
GCAAGGCCATCGGCAAAAAA+AGG - chr1_1:8872992-8873011 Msa0006110:intron 50.0%
CACGCAGTTATGGCTGATGT+TGG - chr1_1:8873049-8873068 Msa0006110:intron 50.0%
GATCTTCTGACTGTTGTCCC+AGG - chr1_1:8873605-8873624 Msa0006110:CDS 50.0%
TCTTCTGACTGTTGTCCCAG+GGG - chr1_1:8873607-8873626 Msa0006110:CDS 50.0%
ACACTGAATGCCATGGGTCT+AGG + chr1_1:8873777-8873796 None:intergenic 50.0%
! CTTAGCTTGGCCCAAAATGC+CGG + chr1_1:8874091-8874110 None:intergenic 50.0%
! ATTTTGGGCCAAGCTAAGGC+TGG - chr1_1:8874093-8874112 Msa0006110:intron 50.0%
CTGGCAACACAATCTTCTGC+AGG - chr1_1:8874593-8874612 Msa0006110:intron 50.0%
TGATGCTGATCCAGATGTGG+TGG - chr1_1:8875413-8875432 Msa0006110:intron 50.0%
GATGCTGATCCAGATGTGGT+GGG - chr1_1:8875414-8875433 Msa0006110:intron 50.0%
! TTGGTGGCATTTCCCTCTTG+TGG - chr1_1:8875648-8875667 Msa0006110:intron 50.0%
GCTGCAACTATGACCACAAG+AGG + chr1_1:8875664-8875683 None:intergenic 50.0%
GTCATAGTTGCAGCCCTTGT+CGG - chr1_1:8875670-8875689 Msa0006110:intron 50.0%
GCTACGCAGATATCCGACAA+GGG + chr1_1:8875686-8875705 None:intergenic 50.0%
AGCTACGCAGATATCCGACA+AGG + chr1_1:8875687-8875706 None:intergenic 50.0%
AATGCAGCCACCAATTGGTC+AGG + chr1_1:8875939-8875958 None:intergenic 50.0%
! GACCAATTGGTGGCTGCATT+TGG - chr1_1:8875939-8875958 Msa0006110:intron 50.0%
CACCAAATGCAGCCACCAAT+TGG + chr1_1:8875944-8875963 None:intergenic 50.0%
GATCGTTCTGTGAAAAGCGG+TGG - chr1_1:8876364-8876383 Msa0006110:intron 50.0%
!! ATCCACCAAGAGTACTGCCA+AGG - chr1_1:8876636-8876655 Msa0006110:five_prime_UTR 50.0%
! CTTCCGGCCTTTGAAGAACT+TGG + chr1_1:8876751-8876770 None:intergenic 50.0%
! GAAGAGGAGCTTCTTGGTGC+TGG - chr1_1:8867480-8867499 Msa0006110:CDS 55.0%
GACTACCCAGGGTTGGATGT+CGG - chr1_1:8868029-8868048 Msa0006110:intron 55.0%
CCTCAGAAAAACGCGCGTCT+AGG + chr1_1:8868304-8868323 None:intergenic 55.0%
! CCTAGACGCGCGTTTTTCTG+AGG - chr1_1:8868301-8868320 Msa0006110:intron 55.0%
CACGTGTTTGGTTGTGGGGT+AGG + chr1_1:8868423-8868442 None:intergenic 55.0%
ACACGATCTCCGCACCTTGA+AGG - chr1_1:8868862-8868881 Msa0006110:intron 55.0%
TTACAGTTTGGGGGTGGGGT+GGG + chr1_1:8868988-8869007 None:intergenic 55.0%
ATTACAGTTTGGGGGTGGGG+TGG + chr1_1:8868989-8869008 None:intergenic 55.0%
ACCCCACCCCCAAACTGTAA+TGG - chr1_1:8868988-8869007 Msa0006110:intron 55.0%
CAGCTCACAGTGCTCACACA+TGG + chr1_1:8869234-8869253 None:intergenic 55.0%
CTTCCCAGACTCACCAATCC+AGG + chr1_1:8869290-8869309 None:intergenic 55.0%
CTACCTAACTTCGAGAGGGG+GGG + chr1_1:8869672-8869691 None:intergenic 55.0%
CCTACCTAACTTCGAGAGGG+GGG + chr1_1:8869673-8869692 None:intergenic 55.0%
CCCTACCTAACTTCGAGAGG+GGG + chr1_1:8869674-8869693 None:intergenic 55.0%
CCCCCTCTCGAAGTTAGGTA+GGG - chr1_1:8869671-8869690 Msa0006110:intron 55.0%
CAGTAGCGGCTATAGCGTAG+TGG + chr1_1:8870176-8870195 None:intergenic 55.0%
CAAATCAGCAGAAGAGGCCG+TGG - chr1_1:8872071-8872090 Msa0006110:intron 55.0%
AGCAATGGCATTGCACAGGC+TGG - chr1_1:8872290-8872309 Msa0006110:intron 55.0%
GGCCTTGAATCTGACGCTGT+TGG - chr1_1:8872818-8872837 Msa0006110:intron 55.0%
! CGGCATTTTGGGCCAAGCTA+AGG - chr1_1:8874089-8874108 Msa0006110:intron 55.0%
GGAGAGAAACCCACCACATC+TGG + chr1_1:8875426-8875445 None:intergenic 55.0%
TGCTTAGACTTGGCAGCAGC+AGG + chr1_1:8876550-8876569 None:intergenic 55.0%
CACCTTGGCAGTACTCTTGG+TGG + chr1_1:8876641-8876660 None:intergenic 55.0%
TTCTTCAAAGGCCGGAAGCG+AGG - chr1_1:8876753-8876772 Msa0006110:five_prime_UTR 55.0%
TCCACTCTTGACCTCGCTTC+CGG + chr1_1:8876767-8876786 None:intergenic 55.0%
CAACGCCGACATCCAACCCT+GGG + chr1_1:8868037-8868056 None:intergenic 60.0%
TCAACGCCGACATCCAACCC+TGG + chr1_1:8868038-8868057 None:intergenic 60.0%
TACAGTTTGGGGGTGGGGTG+GGG + chr1_1:8868987-8869006 None:intergenic 60.0%
GCCGCCACAGCACTTGTGTT+TGG + chr1_1:8869202-8869221 None:intergenic 60.0%
! GTGAGCACTGTGAGCTGCAG+CGG - chr1_1:8869237-8869256 Msa0006110:intron 60.0%
TTCGAGAGGGGGGGTTGCAA+GGG + chr1_1:8869663-8869682 None:intergenic 60.0%
CAACCCCCCCTCTCGAAGTT+AGG - chr1_1:8869666-8869685 Msa0006110:intron 60.0%
CCCCCCTCTCGAAGTTAGGT+AGG - chr1_1:8869670-8869689 Msa0006110:intron 60.0%
ATCAGCAGAAGAGGCCGTGG+AGG - chr1_1:8872074-8872093 Msa0006110:intron 60.0%
AGAAGAGGCCGTGGAGGAGT+CGG - chr1_1:8872080-8872099 Msa0006110:intron 60.0%
TGGGCCATCTTCGCTGAAGC+CGG - chr1_1:8873069-8873088 Msa0006110:intron 60.0%
TCCTCCGGCTTCAGCGAAGA+TGG + chr1_1:8873076-8873095 None:intergenic 60.0%
! CTGAAGAGGAAGCGCACTCC+AGG - chr1_1:8873363-8873382 Msa0006110:CDS 60.0%
GACTTGGCAGCAGCAGGCTT+TGG + chr1_1:8876544-8876563 None:intergenic 60.0%
! TCTAGGGCTGTCGTGGACGC+GGG + chr1_1:8868287-8868306 None:intergenic 65.0%
! GTCTAGGGCTGTCGTGGACG+CGG + chr1_1:8868288-8868307 None:intergenic 65.0%
TTGCCGCAGCCACGTGCCTA+CGG + chr1_1:8868485-8868504 None:intergenic 65.0%
ACAGTTTGGGGGTGGGGTGG+GGG + chr1_1:8868986-8869005 None:intergenic 65.0%
CTTCGAGAGGGGGGGTTGCA+AGG + chr1_1:8869664-8869683 None:intergenic 65.0%
!! CACCTGTGCCGACTCCTCCA+CGG + chr1_1:8872091-8872110 None:intergenic 65.0%
GCCATCTTCGCTGAAGCCGG+AGG - chr1_1:8873072-8873091 Msa0006110:intron 65.0%
GCCGGAAGCGAGGTCAAGAG+TGG - chr1_1:8876763-8876782 Msa0006110:five_prime_UTR 65.0%
! ACGCGCGTCTAGGGCTGTCG+TGG + chr1_1:8868294-8868313 None:intergenic 70.0%
GAGCCGTAGGCACGTGGCTG+CGG - chr1_1:8868479-8868498 Msa0006110:intron 70.0%
TTTGGGGGTGGGGTGGGGGC+AGG + chr1_1:8868982-8869001 None:intergenic 75.0%
GGCCGTGGAGGAGTCGGCAC+AGG - chr1_1:8872086-8872105 Msa0006110:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8867253 8876807 8867253 ID=Msa0006110;Name=Msa0006110
chr1_1 mRNA 8867253 8876807 8867253 ID=Msa0006110-mRNA-1;Parent=Msa0006110;Name=Msa0006110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=203|0.76|0.66|1|0.70|0.72|18|0|915
chr1_1 exon 8867253 8867832 8867253 ID=Msa0006110-mRNA-1:exon:3158;Parent=Msa0006110-mRNA-1
chr1_1 exon 8867907 8867978 8867907 ID=Msa0006110-mRNA-1:exon:3157;Parent=Msa0006110-mRNA-1
chr1_1 exon 8868505 8868548 8868505 ID=Msa0006110-mRNA-1:exon:3156;Parent=Msa0006110-mRNA-1
chr1_1 exon 8868629 8868715 8868629 ID=Msa0006110-mRNA-1:exon:3155;Parent=Msa0006110-mRNA-1
chr1_1 exon 8869394 8869445 8869394 ID=Msa0006110-mRNA-1:exon:3154;Parent=Msa0006110-mRNA-1
chr1_1 exon 8870360 8870433 8870360 ID=Msa0006110-mRNA-1:exon:3153;Parent=Msa0006110-mRNA-1
chr1_1 exon 8870665 8870772 8870665 ID=Msa0006110-mRNA-1:exon:3152;Parent=Msa0006110-mRNA-1
chr1_1 exon 8870889 8871104 8870889 ID=Msa0006110-mRNA-1:exon:3151;Parent=Msa0006110-mRNA-1
chr1_1 exon 8871132 8871304 8871132 ID=Msa0006110-mRNA-1:exon:3150;Parent=Msa0006110-mRNA-1
chr1_1 exon 8871317 8871544 8871317 ID=Msa0006110-mRNA-1:exon:3149;Parent=Msa0006110-mRNA-1
chr1_1 exon 8871572 8871673 8871572 ID=Msa0006110-mRNA-1:exon:3148;Parent=Msa0006110-mRNA-1
chr1_1 exon 8871701 8871851 8871701 ID=Msa0006110-mRNA-1:exon:3147;Parent=Msa0006110-mRNA-1
chr1_1 exon 8871953 8872000 8871953 ID=Msa0006110-mRNA-1:exon:3146;Parent=Msa0006110-mRNA-1
chr1_1 exon 8872095 8872292 8872095 ID=Msa0006110-mRNA-1:exon:3145;Parent=Msa0006110-mRNA-1
chr1_1 exon 8872407 8872533 8872407 ID=Msa0006110-mRNA-1:exon:3144;Parent=Msa0006110-mRNA-1
chr1_1 exon 8873227 8873408 8873227 ID=Msa0006110-mRNA-1:exon:3143;Parent=Msa0006110-mRNA-1
chr1_1 exon 8873507 8873710 8873507 ID=Msa0006110-mRNA-1:exon:3142;Parent=Msa0006110-mRNA-1
chr1_1 exon 8876503 8876807 8876503 ID=Msa0006110-mRNA-1:exon:3141;Parent=Msa0006110-mRNA-1
chr1_1 five_prime_UTR 8876605 8876807 8876605 ID=Msa0006110-mRNA-1:five_prime_utr;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8876503 8876604 8876503 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8873507 8873710 8873507 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8873227 8873408 8873227 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8872407 8872533 8872407 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8872095 8872292 8872095 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8871953 8872000 8871953 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8871701 8871851 8871701 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8871572 8871673 8871572 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8871317 8871544 8871317 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8871132 8871304 8871132 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8870889 8871104 8870889 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8870665 8870772 8870665 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8870360 8870433 8870360 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8869394 8869445 8869394 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8868629 8868715 8868629 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8868505 8868548 8868505 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8867907 8867978 8867907 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
chr1_1 CDS 8867253 8867832 8867253 ID=Msa0006110-mRNA-1:cds;Parent=Msa0006110-mRNA-1
Gene Sequence

>Msa0006110

ATGGCTTCCATCGATAAGGAGCTTGAAGAGGAGCTTCTTGGTGCTGGTAACAAGCTTCTAGATCCTCCTTCTTCTGTGGATAATCTACTTGATATCCTGATTCAAATTGAAAGCTGCCTATCAAGGATTGAACAATCACCTTCTGAATCTATGCTAAATGCACTGTCTCCATCATTGAAAGCATTAATTGCTGATAAACTTTTAAAGCATTCAGACGTCGACGTCAAAGTTGCTCTTGCCTCCTGCTTCAGTGAGATAACAAGAATCACTGCACCTGATGCTCCTTACGATGATGGTCAAATGAAGGAGGTCTTTAGGTTAATTGTATCTTCATTTGAAAATCTACATGATAAGTCAAGCCGATGGTACTCAAAGAGGACTTTAATCCTTGAAACAGTTGCAAAAGTCAGGTCATGTGTGGTAATGCTGGATCTTGAATGCGATGCCCTCATTTTGGAGATGTTTCAGCATTTCTTGAAGACAATAAGGGAACATCATGCAGAAAATGTTTTCTCGTCCATGGAAACTATAATGATCCTCTGTCTTGAAGAAAGTGAAGAAATATCTCATGAGTTACTCTCACCAATCTTAGATAGTGTAAAGAAAGACAATGAGGAGGTTTTGCCAATTGCTCGAAAGTTGGGGGAAAGAGTCCTTGAAAGTTGTGCAACAAGGCTTAAACCCAATTTATTGCAAGCTGTGAATACCTTGGGTATTTCTTTGGATGATTATAGTGATGTTCTTGCCTCAATATGCAAAGAGACATCAGATAACTTGGCGCAAAATGATGTATGTGCTACTAGTGGTCATGTGGTACATGATCGCAAATCAGCAGAAGAGGCCGTGGAGGAGTCGGCACAGGTGGATAGTGAGATTACAAAAGAAGCCACACCACCACAACAAGATAATGCTGCTGGAGAAAGATCTCCCAAGTCTGTCATGAGCAATGGCATTGCACAGGCTGGTGAAGATGATACTTTAGATGTTTCAAAGTCCCTTAAGAATCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTGAAGATCCAAAGCTGGAAAGAAGTACCATCAAGAAGCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTAAAGAACCAAAGCTGGAAAGAAGTACCAGGAGGAAAGGAAAGAAAGCTAGCTCTTCAAAGTCGACCAAACCTTCTAAGAAATCAAATGTTGTCAGTGAGAAGGAAGCTGAGAAAACAATTGACTCTAAAAGTTCCAAAAAAGAAGTTCCTATTTCTCTTAATGAGGATACTACCGGAACTTCAGAGAATGACAAAGAGATTAAAGCTAAGATTTCATCATCTAAAGCAGGTGGCCTTGAATCTGACGCTGTTGGTTCTCCTTCCCCAAGTGAGAGCAATCACGATGAGAATCGTTCTAAGAAACGTGCACGAACAAAAAAGAACGATAGCTCTGCGAAAGAAGTGTCTGAAGGAACATCGGATTCTAAAGTAAAACCAGCAAGGCCATCGGCAAAAAAAGGACCCATTCGTAGCTCTGATGTGAAAACTGTTGTACACGCAGTTATGGCTGATGTTGGGCCATCTTCGCTGAAGCCGGAGGACAAGAAAAAGAAGACACATGTGAAAGGTAGCTCAGAAAAGGGTCTAGCAAAATCTTCTGCTGAAGATGAGGATAAGGTAATGGTATCTTCACTTAAGTCAGCTACGAAAACAACCAAAGATGAACATTCAGAGGAGACTCCTAAGACAACTCTGAAGAGGAAGCGCACTCCAGGAAAAGAAAAAGGGTCTGATATCAAGAAAAATGAGCAAAGTCTTGTTGGAAAACGAGTGAAAGTTTGGTGGCCAGATGATAATATGTTTTATAAAGGTGTTGTTGATTCTTTTGATTCTTCCACTAAGAAGCACAAGGTCTTATATGATGACGGTGACGAGGAAATATTGAATTTCAAAGAGGAGAAATATGAAATTGTTGAAGTTGATGCTGATCCAGATGTGGAAGAAGGAAGTCATCGAGCAAGCCCTGAACCTTCTGCTGATATGCCGCTAAAAAAGAAAGGGAAAACAAATGCTGGTGAATCAAAAAAGGAAGTAAAGAAGGAATCTTCTAAAAGTGGAGGAGCAACATCGAGTAAATCAAAGACACCATCTGCAAAGTCTACCCAAAAGTCCAAGATTGTTGGCAAATCTGATGGTGAAGTTAGTAAAAAATCTAAGGATTCTGCACAAAAAACTGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGCGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGTGGTGGTAAGTCTGAGGATCGATCTGTGAAAAGTGGCAGCAAATCTGTTGATTCTGCACAAAAAAACAATTCCAAGAAGACTGATGGTTCCAAAACAAAGAAATCCAAAGATGATGATGTTGAAACACCAAAGCCTGCTGCTGCCAAGTCTAAGCAAGAAACTCTGAAAAGTGGGAAATCCAAGCAAGGAACACCTAAGATTGCATCTTCCTCCAAGACAAAATCCACCAAGAGTACTGCCAAGGTGAAATTCAATTTGTTGCAGGAAGAAGATTCTGAAAATGAGAACTCTGATGATTCATCAAAAGAGGTTGAAGTCGCAAAAGTTAAGACACCAAGTTCTTCAAAGGCCGGAAGCGAGGTCAAGAGTGGAAAGAAGCGATCAAGAAACTAG
Protein sequence

>Msa0006110

MASIDKELEEELLGAGNKLLDPPSSVDNLLDILIQIESCLSRIEQSPSESMLNALSPSLKALIADKLLKHSDVDVKVALASCFSEITRITAPDAPYDDGQMKEVFRLIVSSFENLHDKSSRWYSKRTLILETVAKVRSCVVMLDLECDALILEMFQHFLKTIREHHAENVFSSMETIMILCLEESEEISHELLSPILDSVKKDNEEVLPIARKLGERVLESCATRLKPNLLQAVNTLGISLDDYSDVLASICKETSDNLAQNDVCATSGHVVHDRKSAEEAVEESAQVDSEITKEATPPQQDNAAGERSPKSVMSNGIAQAGEDDTLDVSKSLKNQDGNNLSGNDERDDMDTEKIDSEDPKLERSTIKKQDGNNLSGNDERDDMDTEKIDSKEPKLERSTRRKGKKASSSKSTKPSKKSNVVSEKEAEKTIDSKSSKKEVPISLNEDTTGTSENDKEIKAKISSSKAGGLESDAVGSPSPSESNHDENRSKKRARTKKNDSSAKEVSEGTSDSKVKPARPSAKKGPIRSSDVKTVVHAVMADVGPSSLKPEDKKKKTHVKGSSEKGLAKSSAEDEDKVMVSSLKSATKTTKDEHSEETPKTTLKRKRTPGKEKGSDIKKNEQSLVGKRVKVWWPDDNMFYKGVVDSFDSSTKKHKVLYDDGDEEILNFKEEKYEIVEVDADPDVEEGSHRASPEPSADMPLKKKGKTNAGESKKEVKKESSKSGGATSSKSKTPSAKSTQKSKIVGKSDGEVSKKSKDSAQKTGGKSEDRSVKSGGKSEDRSVKSGGKSEDRSVKSGSKSVDSAQKNNSKKTDGSKTKKSKDDDVETPKPAAAKSKQETLKSGKSKQGTPKIASSSKTKSTKSTAKVKFNLLQEEDSENENSDDSSKEVEVAKVKTPSSSKAGSEVKSGKKRSRN*