AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572780 MtrunA17_Chr8g0388331 97.917 192 4 0 1 192 1 192 1.82e-132 380
Msa0572780 MtrunA17_Chr8g0388331 52.381 210 97 1 237 443 1 210 1.47e-77 240
Msa0572780 MtrunA17_Chr8g0388321 79.679 187 13 2 192 369 1 171 9.09e-99 293
Msa0572780 MtrunA17_Chr8g0388321 42.754 138 51 3 1 129 46 164 1.74e-26 105
Msa0572780 MtrunA17_Chr4g0076551 57.436 195 83 0 249 443 32 226 5.71e-79 244
Msa0572780 MtrunA17_Chr4g0076551 58.382 173 72 0 20 192 36 208 2.89e-68 217
Msa0572780 MtrunA17_Chr5g0446931 57.653 196 83 0 249 444 31 226 1.38e-78 243
Msa0572780 MtrunA17_Chr5g0446931 57.377 183 78 0 10 192 25 207 1.04e-68 218
Msa0572780 MtrunA17_Chr3g0102821 57.949 195 82 0 249 443 31 225 3.31e-78 242
Msa0572780 MtrunA17_Chr3g0102821 57.627 177 75 0 16 192 31 207 1.08e-67 215
Msa0572780 MtrunA17_Chr4g0055421 53.810 210 94 1 237 443 1 210 5.62e-77 239
Msa0572780 MtrunA17_Chr4g0055421 55.208 192 86 0 1 192 1 192 6.01e-74 231
Msa0572780 MtrunA17_Chr8g0346911 47.107 242 111 3 210 444 3 234 2.48e-73 230
Msa0572780 MtrunA17_Chr8g0346911 62.712 177 66 0 16 192 39 215 8.27e-73 229
Msa0572780 MtrunA17_Chr1g0151621 62.791 172 64 0 21 192 60 231 7.43e-70 222
Msa0572780 MtrunA17_Chr1g0151621 56.044 182 80 0 254 435 60 241 5.59e-69 219
Msa0572780 MtrunA17_Chr2g0290771 54.098 183 84 0 262 444 9 191 7.34e-69 217
Msa0572780 MtrunA17_Chr2g0290771 53.226 186 83 1 21 206 1 182 5.05e-63 202
Msa0572780 MtrunA17_Chr2g0290751 51.412 177 86 0 249 425 34 210 1.42e-62 201
Msa0572780 MtrunA17_Chr2g0290751 53.297 182 85 0 11 192 29 210 2.11e-60 196
Msa0572780 MtrunA17_Chr8g0341941 53.684 190 88 0 254 443 66 255 2.03e-62 202
Msa0572780 MtrunA17_Chr8g0341941 57.558 172 73 0 21 192 66 237 2.37e-58 192
Msa0572780 MtrunA17_Chr2g0290761 50.847 177 87 0 249 425 34 210 2.70e-61 198
Msa0572780 MtrunA17_Chr2g0290761 51.042 192 92 1 3 192 19 210 1.23e-59 194
Msa0572780 MtrunA17_Chr2g0290781 47.368 190 100 0 254 443 41 230 1.81e-60 197
Msa0572780 MtrunA17_Chr2g0290781 55.030 169 76 0 24 192 44 212 3.13e-57 189
Msa0572780 MtrunA17_Chr8g0388311 94.118 85 5 0 365 449 1 85 1.27e-50 166
Msa0572780 MtrunA17_Chr8g0388311 49.180 61 31 0 132 192 1 61 8.37e-15 69.7
Msa0572780 MtrunA17_Chr3g0126801 60.377 106 42 0 343 448 4 109 2.95e-42 145
Msa0572780 MtrunA17_Chr3g0126801 59.756 82 33 0 112 193 6 87 4.55e-29 110
Msa0572780 MtrunA17_Chr3g0126811 65.455 110 37 1 1 109 1 110 1.22e-41 144
Msa0572780 MtrunA17_Chr3g0126811 53.448 116 50 1 237 348 1 116 4.80e-36 129
Msa0572780 MtrunA17_Chr4g0063121 42.945 163 73 1 30 192 7 149 8.06e-41 145
Msa0572780 MtrunA17_Chr4g0063121 38.043 184 94 1 263 446 7 170 1.24e-37 136
Msa0572780 MtrunA17_Chr5g0399921 53.043 115 53 1 1 115 1 114 2.93e-35 127
Msa0572780 MtrunA17_Chr5g0399921 57.009 107 44 1 237 341 1 107 8.27e-35 125
Msa0572780 MtrunA17_Chr5g0399931 55.738 61 27 0 132 192 1 61 3.54e-17 76.3
Msa0572780 MtrunA17_Chr5g0399931 53.521 71 33 0 365 435 1 71 2.78e-15 70.9
Msa0572780 MtrunA17_Chr4g0059951 30.488 164 96 5 16 175 360 509 1.74e-11 66.2
Msa0572780 MtrunA17_Chr1g0188171 36.719 128 68 5 49 173 25 142 9.67e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572780 AT5G24270.4 58.252 206 79 1 237 435 1 206 5.47e-85 260
Msa0572780 AT5G24270.4 58.081 198 79 1 16 213 20 213 4.87e-76 237
Msa0572780 AT5G24270.1 58.252 206 79 1 237 435 1 206 5.47e-85 260
Msa0572780 AT5G24270.1 58.081 198 79 1 16 213 20 213 4.87e-76 237
Msa0572780 AT5G24270.2 58.252 206 79 1 237 435 1 206 5.47e-85 260
Msa0572780 AT5G24270.2 58.081 198 79 1 16 213 20 213 4.87e-76 237
Msa0572780 AT5G24270.5 61.798 178 68 0 258 435 4 181 9.56e-79 243
Msa0572780 AT5G24270.5 58.730 189 74 1 25 213 4 188 3.82e-74 231
Msa0572780 AT1G64480.4 65.104 192 67 0 1 192 5 196 2.64e-78 242
Msa0572780 AT1G64480.4 56.284 183 79 1 244 426 16 197 1.58e-68 217
Msa0572780 AT1G64480.2 65.104 192 67 0 1 192 5 196 5.00e-78 242
Msa0572780 AT1G64480.2 55.000 200 89 1 244 443 16 214 4.30e-74 232
Msa0572780 AT1G64480.3 65.104 192 67 0 1 192 5 196 5.00e-78 242
Msa0572780 AT1G64480.3 55.000 200 89 1 244 443 16 214 4.30e-74 232
Msa0572780 AT1G64480.1 65.104 192 67 0 1 192 5 196 5.00e-78 242
Msa0572780 AT1G64480.1 55.000 200 89 1 244 443 16 214 4.30e-74 232
Msa0572780 AT4G26570.1 57.949 195 82 0 250 444 32 226 2.12e-77 241
Msa0572780 AT4G26570.1 57.803 173 73 0 20 192 35 207 1.88e-66 213
Msa0572780 AT5G55990.1 57.436 195 83 0 250 444 32 226 4.68e-76 237
Msa0572780 AT5G55990.1 52.083 192 92 0 1 192 16 207 1.99e-64 207
Msa0572780 AT5G55990.2 57.436 195 83 0 250 444 32 226 4.68e-76 237
Msa0572780 AT5G55990.2 52.083 192 92 0 1 192 16 207 1.99e-64 207
Msa0572780 AT4G26570.2 56.784 199 82 1 250 444 32 230 3.48e-75 235
Msa0572780 AT4G26570.2 56.497 177 73 1 20 192 35 211 2.69e-64 207
Msa0572780 AT5G47100.1 52.857 210 96 1 237 443 1 210 4.57e-75 234
Msa0572780 AT5G47100.1 55.208 192 86 0 1 192 1 192 3.00e-72 227
Msa0572780 AT4G17615.4 52.857 210 96 2 237 443 1 210 3.25e-74 232
Msa0572780 AT4G17615.4 55.729 192 85 0 1 192 1 192 4.92e-72 226
Msa0572780 AT4G17615.1 52.857 210 96 2 237 443 1 210 3.25e-74 232
Msa0572780 AT4G17615.1 55.729 192 85 0 1 192 1 192 4.92e-72 226
Msa0572780 AT4G17615.5 52.857 210 96 2 237 443 1 210 3.25e-74 232
Msa0572780 AT4G17615.5 55.729 192 85 0 1 192 1 192 4.92e-72 226
Msa0572780 AT4G33000.2 53.398 206 95 1 239 443 41 246 1.51e-72 229
Msa0572780 AT4G33000.2 52.683 205 92 2 3 206 38 238 2.31e-64 207
Msa0572780 AT4G33000.1 53.398 206 95 1 239 443 51 256 2.12e-72 229
Msa0572780 AT4G33000.1 52.683 205 92 2 3 206 48 248 4.11e-64 207
Msa0572780 AT4G17615.3 54.271 199 91 0 1 199 1 199 4.86e-72 228
Msa0572780 AT4G17615.3 54.922 193 84 2 237 426 1 193 4.91e-69 220
Msa0572780 AT4G01420.1 53.234 201 92 1 237 435 1 201 9.15e-71 223
Msa0572780 AT4G01420.1 45.771 201 108 1 1 201 1 200 2.25e-52 175
Msa0572780 AT4G01420.2 53.646 192 87 1 237 426 1 192 2.50e-68 216
Msa0572780 AT4G01420.2 46.875 192 101 1 1 192 1 191 3.34e-52 174
Msa0572780 AT5G24270.3 60.131 153 61 0 283 435 7 159 2.03e-65 208
Msa0572780 AT5G24270.3 54.375 160 69 1 54 213 11 166 3.04e-58 189
Msa0572780 AT4G16350.2 48.544 206 102 1 230 435 10 211 2.60e-62 202
Msa0572780 AT4G16350.2 49.468 188 90 2 5 192 19 201 1.53e-56 187
Msa0572780 AT4G16350.1 48.544 206 102 1 230 435 10 211 2.60e-62 202
Msa0572780 AT4G16350.1 49.468 188 90 2 5 192 19 201 1.53e-56 187
Msa0572780 AT4G17615.2 57.554 139 59 0 54 192 12 150 1.72e-54 179
Msa0572780 AT4G17615.2 50.955 157 77 0 287 443 12 168 1.63e-53 177
Msa0572780 AT5G47100.2 52.564 156 74 0 1 156 1 156 2.84e-53 176
Msa0572780 AT5G47100.2 54.140 157 69 1 237 390 1 157 4.53e-53 176
Msa0572780 AT4G26560.1 44.503 191 93 2 266 443 23 213 2.44e-51 173
Msa0572780 AT4G26560.1 41.040 173 89 2 33 192 23 195 2.69e-38 138
Msa0572780 AT4G33000.4 55.263 152 67 1 239 389 41 192 5.79e-51 171
Msa0572780 AT4G33000.4 52.903 155 72 1 3 156 38 192 2.53e-47 162
Msa0572780 AT4G33000.6 55.263 152 67 1 239 389 41 192 5.79e-51 171
Msa0572780 AT4G33000.6 52.903 155 72 1 3 156 38 192 2.53e-47 162
Msa0572780 AT4G33000.5 55.629 151 66 1 239 388 41 191 8.90e-51 171
Msa0572780 AT4G33000.5 52.564 156 73 1 3 157 38 193 4.42e-47 162
Msa0572780 AT4G33000.3 55.963 109 47 1 3 110 38 146 4.14e-31 117
Msa0572780 AT4G33000.3 53.333 105 48 1 239 342 41 145 2.53e-29 112

Find 82 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATGGTATGATAGATTT+TGG 0.172169 4_1:-75730361 Msa0572780:CDS
CTTGAATGATTATTTGATTT+TGG 0.189066 4_1:-75733980 Msa0572780:five_prime_UTR
CGTAACGGAGTAATTGAATT+TGG 0.204781 4_1:-75732830 Msa0572780:CDS
GTTTATGTTTCCCAGACTTT+GGG 0.231886 4_1:+75730990 None:intergenic
TTTCAAGAAGCTGATTTAAA+AGG 0.244406 4_1:-75729387 Msa0572780:CDS
TTCTTCTCTTCAGATGTCTT+TGG 0.273008 4_1:+75732776 None:intergenic
GAGTTTCAACTTGGCTTATT+CGG 0.296864 4_1:-75730571 Msa0572780:CDS
GATCTTAATATGCAGTTTCC+TGG 0.316991 4_1:-75727949 Msa0572780:CDS
AGTGGATATTACTTTAGATA+TGG 0.322000 4_1:+75729288 None:intergenic
GTTTGTTCAGCAAGAATTGC+TGG 0.325790 4_1:+75730914 None:intergenic
TTGATGTCTATCAATTTAAC+TGG 0.329460 4_1:+75727718 None:intergenic
GAACCAAATCAGATTCTCTT+AGG 0.338581 4_1:+75729584 None:intergenic
CTTGCACCAAACCGCGATTT+CGG 0.347067 4_1:-75730946 Msa0572780:CDS
TGTTTATGTTTCCCAGACTT+TGG 0.357975 4_1:+75730989 None:intergenic
AGCAAGAAACAGAACCTCTT+TGG 0.371569 4_1:-75730544 Msa0572780:CDS
TGTTGAATCCATTGTGGAAA+AGG 0.373453 4_1:-75731988 Msa0572780:intron
AAGGAAACCTACTTTAGATA+TGG 0.376068 4_1:+75731763 None:intergenic
CGCAAGTGCACGTATATATA+CGG 0.380050 4_1:-75731023 Msa0572780:CDS
CATTTCGACTCTATGATATA+CGG 0.383781 4_1:-75730178 Msa0572780:CDS
GTTAATTCATCCCCAAAGTC+TGG 0.386655 4_1:-75731001 Msa0572780:CDS
ACTGCTACACCAGCTCTATA+TGG 0.391156 4_1:-75731064 Msa0572780:CDS
AGGAGATGGGAAGATTGATA+TGG 0.412059 4_1:-75731842 Msa0572780:CDS
CATTTAAACTGTTTGACCTT+GGG 0.422487 4_1:-75732656 Msa0572780:CDS
TATTAGATCGCTCATCGAAT+TGG 0.424382 4_1:-75727749 Msa0572780:three_prime_UTR
ACTCCTAAGAGAATCTGATT+TGG 0.424899 4_1:-75729587 Msa0572780:CDS
ACAATCCTCCATTCTTGCCT+TGG 0.428593 4_1:-75733848 Msa0572780:CDS
GTGTCAGGTCCTATTGTGTT+AGG 0.433892 4_1:-75733956 Msa0572780:five_prime_UTR
AGTAGTTCAATTATTGATGA+TGG 0.437437 4_1:-75733386 Msa0572780:CDS
CTGTTTGACCTTGGGAAGAC+AGG 0.454872 4_1:-75732648 Msa0572780:CDS
TTCATGCCGAAATCGCGGTT+TGG 0.455851 4_1:+75730940 None:intergenic
AGAGTGCTACCTAACACAAT+AGG 0.460291 4_1:+75733947 None:intergenic
GCATTTAAACTGTTTGACCT+TGG 0.472507 4_1:-75732657 Msa0572780:CDS
AGCAGCTCAATGGTCAATGA+TGG 0.472639 4_1:-75730700 Msa0572780:CDS
TCTTTCTCATGATATAATTG+AGG 0.479063 4_1:-75729563 Msa0572780:CDS
TGATGTCTCCAAGGCAAGAA+TGG 0.479240 4_1:+75733840 None:intergenic
AATTGAGGTCATAATTGATA+AGG 0.482314 4_1:-75729548 Msa0572780:intron
ACTTATTGATCAAGAGGAAT+GGG 0.484570 4_1:-75729358 Msa0572780:CDS
AACAGAACCTCTTTGGCGAC+AGG 0.490563 4_1:-75730537 Msa0572780:CDS
AGCAGAATCTACTTGCAAGC+AGG 0.490658 4_1:-75733110 Msa0572780:CDS
GAAGTTGAAGGAGATGGTCT+TGG 0.495842 4_1:-75732051 Msa0572780:intron
TATTTCTGAAAAGTGCGAGT+TGG 0.503450 4_1:+75733139 None:intergenic
ATGGAGGAGGTTGACTCAAA+AGG 0.503493 4_1:-75731862 Msa0572780:CDS
GAAGCTGATTTAAAAGGAGA+TGG 0.509753 4_1:-75729381 Msa0572780:CDS
GAGGTTGACTCAAAAGGAGA+TGG 0.510798 4_1:-75731856 Msa0572780:CDS
GAAGGTAAGAGAGATGATAC+TGG 0.511413 4_1:-75729611 Msa0572780:intron
GACTTATTGATCAAGAGGAA+TGG 0.513009 4_1:-75729359 Msa0572780:CDS
CATGAAATTAAGCAGCTCAA+TGG 0.514670 4_1:-75730710 Msa0572780:CDS
GTGGTTGAGGCGCTGCTGGA+TGG 0.520629 4_1:+75730311 None:intergenic
GTCATGATCTTAAGAAGAGA+AGG 0.521718 4_1:+75731790 None:intergenic
GATATTGAAGATAACACAAT+CGG 0.522048 4_1:-75727910 Msa0572780:CDS
GTCATATTCCTCAGTAAGGA+TGG 0.530357 4_1:+75729315 None:intergenic
TTTATGTTTCCCAGACTTTG+GGG 0.535451 4_1:+75730991 None:intergenic
AATTGTCATATTCCTCAGTA+AGG 0.537372 4_1:+75729311 None:intergenic
ATACTTTGTTATTTCTTCTG+CGG 0.550295 4_1:+75727662 None:intergenic
GTACTTACATGATGTCTCCA+AGG 0.563471 4_1:+75733831 None:intergenic
TTAATTCATCCCCAAAGTCT+GGG 0.563522 4_1:-75731000 Msa0572780:CDS
AGATGGACTTATTGATCAAG+AGG 0.568328 4_1:-75729364 Msa0572780:CDS
CACACTGAAGTTGAAGGAGA+TGG 0.569454 4_1:-75732057 Msa0572780:intron
ATACAGGAAGAGTTTCAACT+TGG 0.569706 4_1:-75730580 Msa0572780:intron
TTTGACAGTTACTGTGAATG+AGG 0.571808 4_1:-75733441 Msa0572780:intron
CGATATTGTTGAATCCATTG+TGG 0.573614 4_1:-75731994 Msa0572780:CDS
GAACATATGCCATATAGAGC+TGG 0.579476 4_1:+75731055 None:intergenic
GGAAGATTGATATGGAAGAG+TGG 0.580086 4_1:-75731834 Msa0572780:CDS
GCAGAATCTACTTGCAAGCA+GGG 0.583200 4_1:-75733109 Msa0572780:intron
AGGCTTTATTGAAAGAGATG+AGG 0.584329 4_1:-75730150 Msa0572780:intron
AGTTACTGTGAATGAGGTTG+AGG 0.584753 4_1:-75733435 Msa0572780:CDS
GAAAGAAAATGTCTCTTCAG+AGG 0.587284 4_1:-75727877 Msa0572780:three_prime_UTR
GCAGCTCAATGGTCAATGAT+GGG 0.591912 4_1:-75730699 Msa0572780:CDS
TGCTGACCCTGTCGCCAAAG+AGG 0.592635 4_1:+75730530 None:intergenic
ACAGAACCTCTTTGGCGACA+GGG 0.596897 4_1:-75730536 Msa0572780:intron
AGGTTGACTCAAAAGGAGAT+GGG 0.599352 4_1:-75731855 Msa0572780:CDS
ATGTTTGATATTAAGCGTAA+CGG 0.599376 4_1:-75732845 Msa0572780:CDS
GAGCATCAAACCAACTTGTG+TGG 0.601428 4_1:-75731089 Msa0572780:CDS
TGATGATGGCTGCATTCACA+AGG 0.608057 4_1:-75733372 Msa0572780:intron
CAATGTATCCTGTCTTCCCA+AGG 0.609387 4_1:+75732640 None:intergenic
CTCTATGATATACGGCAAAG+AGG 0.611147 4_1:-75730170 Msa0572780:CDS
GGATCTTCATGCCGAAATCG+CGG 0.620749 4_1:+75730935 None:intergenic
CTCAAAATCCATCCTTACTG+AGG 0.620870 4_1:-75729323 Msa0572780:CDS
TGTCTCCAAGGCAAGAATGG+AGG 0.659508 4_1:+75733843 None:intergenic
TCTGATACCAGTTCAAAACC+AGG 0.662807 4_1:+75727931 None:intergenic
GTAGCAGTATCCACACAAGT+TGG 0.688111 4_1:+75731079 None:intergenic
AGGATACATTGAGCATAGTG+AGG 0.693274 4_1:-75732628 Msa0572780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATGAAATTTTATAG+TGG - chr4_1:75728778-75728797 Msa0572780:intron 10.0%
!! AAAATGAAAGATAAATAAAA+AGG + chr4_1:75732222-75732241 None:intergenic 10.0%
!!! ATTTTAATGTCACTTTTTAT+AGG + chr4_1:75729509-75729528 None:intergenic 15.0%
!!! TTCATAGTTACTATTATTTT+TGG - chr4_1:75730005-75730024 Msa0572780:intron 15.0%
!!! CTTAGAATGATTTTATTTAT+TGG - chr4_1:75730498-75730517 Msa0572780:intron 15.0%
!! ATTTATTGGAACATAAAATT+TGG - chr4_1:75730512-75730531 Msa0572780:intron 15.0%
!! ATAAAGAAATTAGTAATATC+TGG + chr4_1:75731693-75731712 None:intergenic 15.0%
!! TTAAAGTTATTTAATAAAGC+CGG + chr4_1:75732014-75732033 None:intergenic 15.0%
!! ATATAATTAATTCTTAGAGA+GGG + chr4_1:75732251-75732270 None:intergenic 15.0%
!! TATATAATTAATTCTTAGAG+AGG + chr4_1:75732252-75732271 None:intergenic 15.0%
!! ATATTCTTAAGAAATTTCAT+AGG + chr4_1:75733318-75733337 None:intergenic 15.0%
!!! ATCATAATAAAATTTTGAGT+TGG - chr4_1:75733526-75733545 Msa0572780:intron 15.0%
!!! TATTGATGATATATATTATG+TGG + chr4_1:75733676-75733695 None:intergenic 15.0%
!! CATAATATATATCATCAATA+CGG - chr4_1:75733676-75733695 Msa0572780:intron 15.0%
!!! CTTGAATGATTATTTGATTT+TGG - chr4_1:75727761-75727780 Msa0572780:three_prime_UTR 20.0%
!!! TTCACAAGGTATATTTATTT+TGG - chr4_1:75728383-75728402 Msa0572780:intron 20.0%
!! TTCATATAGAGAGAAATATT+TGG + chr4_1:75728445-75728464 None:intergenic 20.0%
!! AACTGTAAGAACAAAAAAAA+TGG + chr4_1:75729064-75729083 None:intergenic 20.0%
!! TTTGTATTAATTTACCCTTT+AGG - chr4_1:75729238-75729257 Msa0572780:intron 20.0%
!!! TCAAAATGGTCTTATATTTA+AGG - chr4_1:75729530-75729549 Msa0572780:intron 20.0%
!! AAGAGATAAGAATTAAATTG+AGG + chr4_1:75729830-75729849 None:intergenic 20.0%
!! AATAGTAACTATGAAATTGA+AGG + chr4_1:75730000-75730019 None:intergenic 20.0%
!! TTAACAGTAAAAGATTAGAA+TGG + chr4_1:75730046-75730065 None:intergenic 20.0%
!!! AATTTCAACTTTTCTTAACT+GGG + chr4_1:75730377-75730396 None:intergenic 20.0%
!! ACCATAATTAAAATTGTACA+AGG - chr4_1:75731103-75731122 Msa0572780:intron 20.0%
!!! TCCTTGTACAATTTTAATTA+TGG + chr4_1:75731107-75731126 None:intergenic 20.0%
!! AATTAATCTTCAACATATAC+AGG - chr4_1:75731145-75731164 Msa0572780:intron 20.0%
!! ATATTTGACTCAAAAAATGA+TGG - chr4_1:75731365-75731384 Msa0572780:intron 20.0%
!!! TTTGATTTTAACTTTCTTGA+TGG - chr4_1:75732076-75732095 Msa0572780:intron 20.0%
!! TATAATTAATTCTTAGAGAG+GGG + chr4_1:75732250-75732269 None:intergenic 20.0%
!!! GTTTTTTGTGTCATATTTTT+TGG + chr4_1:75732610-75732629 None:intergenic 20.0%
!!! AATCTTTTTACAATTCTCAA+CGG - chr4_1:75732925-75732944 Msa0572780:intron 20.0%
!! AATTCTCATCATTATATTCT+TGG - chr4_1:75733382-75733401 Msa0572780:CDS 20.0%
!!! ATAATTTTGTTTCAACATCA+AGG - chr4_1:75733607-75733626 Msa0572780:intron 20.0%
!!! TTTTGTTTGAATATTAGAAG+TGG - chr4_1:75733699-75733718 Msa0572780:intron 20.0%
! AGTAGTTCAATTATTGATGA+TGG - chr4_1:75728355-75728374 Msa0572780:intron 25.0%
! CCATAATTACAATTGTATGA+GGG + chr4_1:75728712-75728731 None:intergenic 25.0%
! TCCATAATTACAATTGTATG+AGG + chr4_1:75728713-75728732 None:intergenic 25.0%
!!! TAACAAAAATCTCTGAAACA+TGG - chr4_1:75728742-75728761 Msa0572780:intron 25.0%
! ATGTTTGATATTAAGCGTAA+CGG - chr4_1:75728896-75728915 Msa0572780:intron 25.0%
! AAAGTGAAAATGATGAACAA+TGG + chr4_1:75729158-75729177 None:intergenic 25.0%
!! TTGTTCATCATTTTCACTTT+AGG - chr4_1:75729158-75729177 Msa0572780:intron 25.0%
! GATAAAGATCGACATAATTA+TGG - chr4_1:75729435-75729454 Msa0572780:intron 25.0%
! GTGACATTAAAATCTCAAAA+TGG - chr4_1:75729516-75729535 Msa0572780:intron 25.0%
!!! TGAACCTTTTTTGTACATAA+TGG - chr4_1:75729661-75729680 Msa0572780:intron 25.0%
! GATAAATGTATGGTTTCATA+TGG + chr4_1:75729786-75729805 None:intergenic 25.0%
! TTCTTATCTCTTATACTTCT+TGG - chr4_1:75729838-75729857 Msa0572780:intron 25.0%
! TAAGTGAATCCATTAATGTT+AGG + chr4_1:75730326-75730345 None:intergenic 25.0%
!! GAATTTCAACTTTTCTTAAC+TGG + chr4_1:75730378-75730397 None:intergenic 25.0%
! TAGTTTCTTTGATCATTCAT+TGG + chr4_1:75730400-75730419 None:intergenic 25.0%
!! ACATAAAATTTGGAACAAAG+TGG - chr4_1:75730522-75730541 Msa0572780:intron 25.0%
!! ACATAAACAAGTCTTTTTGA+TGG - chr4_1:75730766-75730785 Msa0572780:intron 25.0%
!! CATAAACAAGTCTTTTTGAT+GGG - chr4_1:75730767-75730786 Msa0572780:intron 25.0%
!! ATAAACAAGTCTTTTTGATG+GGG - chr4_1:75730768-75730787 Msa0572780:intron 25.0%
! ATATCCTAGAGTTTGTATTA+TGG - chr4_1:75730880-75730899 Msa0572780:intron 25.0%
! AATACCATAATACAAACTCT+AGG + chr4_1:75730887-75730906 None:intergenic 25.0%
! TCAATTTCAGAAACATTAAC+TGG + chr4_1:75730993-75731012 None:intergenic 25.0%
!! AATGATGGTATGATAGATTT+TGG - chr4_1:75731380-75731399 Msa0572780:intron 25.0%
!!! ATGATATTTTTTGTCCGAAA+TGG + chr4_1:75731798-75731817 None:intergenic 25.0%
! CAAGTTGTAAAGATATTTAG+TGG + chr4_1:75731954-75731973 None:intergenic 25.0%
! CACTAAATATCTTTACAACT+TGG - chr4_1:75731952-75731971 Msa0572780:intron 25.0%
! TCTTTCTCATGATATAATTG+AGG - chr4_1:75732178-75732197 Msa0572780:intron 25.0%
! AATTGAGGTCATAATTGATA+AGG - chr4_1:75732193-75732212 Msa0572780:intron 25.0%
!! TTTCAAGAAGCTGATTTAAA+AGG - chr4_1:75732354-75732373 Msa0572780:intron 25.0%
! AGTGGATATTACTTTAGATA+TGG + chr4_1:75732456-75732475 None:intergenic 25.0%
!!! TTTGTGTCATATTTTTTGGT+AGG + chr4_1:75732606-75732625 None:intergenic 25.0%
! TACATCTTAGATAAGTTGTT+TGG + chr4_1:75732710-75732729 None:intergenic 25.0%
! TTGCATAATGAAGTTATGAT+GGG + chr4_1:75733035-75733054 None:intergenic 25.0%
! ATTGCATAATGAAGTTATGA+TGG + chr4_1:75733036-75733055 None:intergenic 25.0%
! TTCATTATGCAATGTTCATA+TGG - chr4_1:75733043-75733062 Msa0572780:intron 25.0%
!!! CACTTTTTTTAACTATACCT+AGG - chr4_1:75733355-75733374 Msa0572780:intron 25.0%
!! AATGATGAGAATTTTATCCT+AGG + chr4_1:75733375-75733394 None:intergenic 25.0%
! GATATTGAAGATAACACAAT+CGG - chr4_1:75733831-75733850 Msa0572780:intron 25.0%
! TTGATGTCTATCAATTTAAC+TGG + chr4_1:75734026-75734045 None:intergenic 25.0%
!! TTTTGAAGAATTCAGTAGTG+AGG - chr4_1:75727699-75727718 Msa0572780:three_prime_UTR 30.0%
!! TTATTTGATTTTGGTGTGTC+AGG - chr4_1:75727770-75727789 Msa0572780:three_prime_UTR 30.0%
!! GATTGTTCTTGCTTAGTTTT+TGG + chr4_1:75727879-75727898 None:intergenic 30.0%
! CACATCTTCAATCTAAAGTA+TGG - chr4_1:75728085-75728104 Msa0572780:intron 30.0%
!!! TTTTGACTTTTAGTCACTCA+TGG + chr4_1:75728156-75728175 None:intergenic 30.0%
TAATCATATATGAGCCTGTT+TGG + chr4_1:75728211-75728230 None:intergenic 30.0%
TATACATGTCAGATTTCTTG+TGG - chr4_1:75728246-75728265 Msa0572780:intron 30.0%
!!! TTGTGGTTTTAACTCTGATT+TGG - chr4_1:75728263-75728282 Msa0572780:intron 30.0%
CCCTCATACAATTGTAATTA+TGG - chr4_1:75728709-75728728 Msa0572780:intron 30.0%
TGAAACATGGATGAAATTCA+TGG - chr4_1:75728755-75728774 Msa0572780:intron 30.0%
CATTTAAACTGTTTGACCTT+GGG - chr4_1:75729085-75729104 Msa0572780:intron 30.0%
ATGAACAATGGAAAGGTTAA+AGG + chr4_1:75729146-75729165 None:intergenic 30.0%
GAAAATGATGAACAATGGAA+AGG + chr4_1:75729153-75729172 None:intergenic 30.0%
ACTACTAAAGTTACATGAGA+AGG + chr4_1:75729589-75729608 None:intergenic 30.0%
! TGTGCCATTATGTACAAAAA+AGG + chr4_1:75729668-75729687 None:intergenic 30.0%
ATTGAAGGAGGATAAATGTA+TGG + chr4_1:75729796-75729815 None:intergenic 30.0%
GAAACTATAGAAATTGAAGG+AGG + chr4_1:75729808-75729827 None:intergenic 30.0%
GAGGAAACTATAGAAATTGA+AGG + chr4_1:75729811-75729830 None:intergenic 30.0%
TCCATTGTCTAAAAAAGATC+AGG + chr4_1:75729864-75729883 None:intergenic 30.0%
!!! TGATCTTTTTTAGACAATGG+AGG - chr4_1:75729863-75729882 Msa0572780:intron 30.0%
AAGGAAACCTACTTTAGATA+TGG + chr4_1:75729981-75730000 None:intergenic 30.0%
TGAATCCATTAATGTTAGGT+AGG + chr4_1:75730322-75730341 None:intergenic 30.0%
GCAAATAAATCTATGCTTGT+TGG + chr4_1:75730473-75730492 None:intergenic 30.0%
!! TACAAACTCTAGGATATGAT+TGG + chr4_1:75730877-75730896 None:intergenic 30.0%
ATACTTCACAGCTACATTAT+TGG + chr4_1:75730921-75730940 None:intergenic 30.0%
AAGTAAGCTCTATAAAGTTG+AGG - chr4_1:75731075-75731094 Msa0572780:CDS 30.0%
CATTTCGACTCTATGATATA+CGG - chr4_1:75731563-75731582 Msa0572780:intron 30.0%
TATGTCTGAATTCACCATTT+CGG - chr4_1:75731781-75731800 Msa0572780:CDS 30.0%
ACTTATTGATCAAGAGGAAT+GGG - chr4_1:75732383-75732402 Msa0572780:intron 30.0%
AATTGTCATATTCCTCAGTA+AGG + chr4_1:75732433-75732452 None:intergenic 30.0%
GAAATGCATGAAATGAAAAG+TGG + chr4_1:75732474-75732493 None:intergenic 30.0%
GTAATCGTTAGTATTTGAAG+TGG - chr4_1:75732526-75732545 Msa0572780:intron 30.0%
TGTACTTTCGATTCTAACTT+TGG + chr4_1:75732753-75732772 None:intergenic 30.0%
AAGATTTCTCATACTGATCT+AGG + chr4_1:75732793-75732812 None:intergenic 30.0%
TTTGAGTGTCACGAAAATAA+TGG + chr4_1:75732850-75732869 None:intergenic 30.0%
TACTCTCATTGTCGTATTAT+TGG + chr4_1:75732956-75732975 None:intergenic 30.0%
AATGAGAGTAAATTGAACGA+AGG - chr4_1:75732966-75732985 Msa0572780:intron 30.0%
GAAACAAAGGGTAAAGTTTA+AGG + chr4_1:75733101-75733120 None:intergenic 30.0%
GATTTAGACACAGAAACAAA+GGG + chr4_1:75733113-75733132 None:intergenic 30.0%
TGATTTAGACACAGAAACAA+AGG + chr4_1:75733114-75733133 None:intergenic 30.0%
TTCTGTGTCTAAATCAATTG+AGG - chr4_1:75733118-75733137 Msa0572780:CDS 30.0%
!! ATATCTTGCATTTGCTATTG+TGG + chr4_1:75733208-75733227 None:intergenic 30.0%
AATAGCAAATGCAAGATATC+AGG - chr4_1:75733209-75733228 Msa0572780:intron 30.0%
! CAGTATTGAGTTCATAATCT+AGG + chr4_1:75733479-75733498 None:intergenic 30.0%
! TGGTTTCGTAAGATTGATTT+AGG + chr4_1:75733553-75733572 None:intergenic 30.0%
AAATCAATCTTACGAAACCA+CGG - chr4_1:75733553-75733572 Msa0572780:intron 30.0%
TGATATTGTTGAAACTCTAG+AGG - chr4_1:75733584-75733603 Msa0572780:intron 30.0%
CAGTGAGATTGTCATAATAA+CGG + chr4_1:75733640-75733659 None:intergenic 30.0%
ATTAAGCTTCGTCATATTTG+TGG - chr4_1:75733736-75733755 Msa0572780:intron 30.0%
TTATAAGTAACACTTGCCTT+TGG - chr4_1:75733759-75733778 Msa0572780:intron 30.0%
! AAGAGACATTTTCTTTCTCA+TGG + chr4_1:75733861-75733880 None:intergenic 30.0%
!!! AGCTGTTTTTGCTTGATGAA+AGG - chr4_1:75727849-75727868 Msa0572780:three_prime_UTR 35.0%
CTTTAGATTGAAGATGTGTC+TGG + chr4_1:75728083-75728102 None:intergenic 35.0%
CTCAATTGAATCTCTCTTCA+CGG - chr4_1:75728128-75728147 Msa0572780:intron 35.0%
AACATTTGCTCAAACCAAAC+AGG - chr4_1:75728194-75728213 Msa0572780:intron 35.0%
CATGTATAGAACTATAGCAG+CGG + chr4_1:75728234-75728253 None:intergenic 35.0%
CAGTAACTGTCAAATGGTAA+AGG + chr4_1:75728294-75728313 None:intergenic 35.0%
CATTCACAGTAACTGTCAAA+TGG + chr4_1:75728300-75728319 None:intergenic 35.0%
TTTGACAGTTACTGTGAATG+AGG - chr4_1:75728300-75728319 Msa0572780:intron 35.0%
ACTCAAGTATGATGACAGTT+AGG + chr4_1:75728513-75728532 None:intergenic 35.0%
CGTCAAGACAATTTATTTGC+AGG - chr4_1:75728572-75728591 Msa0572780:intron 35.0%
CAAGACAATTTATTTGCAGG+AGG - chr4_1:75728575-75728594 Msa0572780:intron 35.0%
! TATTTCTGAAAAGTGCGAGT+TGG + chr4_1:75728605-75728624 None:intergenic 35.0%
AAGCTAAGAAAACTGAATGC+AGG - chr4_1:75728865-75728884 Msa0572780:intron 35.0%
! CGTAACGGAGTAATTGAATT+TGG - chr4_1:75728911-75728930 Msa0572780:intron 35.0%
TTCTTCTCTTCAGATGTCTT+TGG + chr4_1:75728968-75728987 None:intergenic 35.0%
GCATTTAAACTGTTTGACCT+TGG - chr4_1:75729084-75729103 Msa0572780:intron 35.0%
! AAATTGATTCTGTGCAGGTT+TGG + chr4_1:75729382-75729401 None:intergenic 35.0%
! GACATAAATTGATTCTGTGC+AGG + chr4_1:75729387-75729406 None:intergenic 35.0%
! GGTCTTATATTTAAGGACAG+AGG - chr4_1:75729537-75729556 Msa0572780:intron 35.0%
CGATATTGTTGAATCCATTG+TGG - chr4_1:75729747-75729766 Msa0572780:intron 35.0%
TGTTGAATCCATTGTGGAAA+AGG - chr4_1:75729753-75729772 Msa0572780:intron 35.0%
! GTTAAGAACCTTTTCCACAA+TGG + chr4_1:75729764-75729783 None:intergenic 35.0%
!!! GCCTGATCTTTTTTAGACAA+TGG - chr4_1:75729860-75729879 Msa0572780:intron 35.0%
!!! TCTTTTTTAGACAATGGAGG+AGG - chr4_1:75729866-75729885 Msa0572780:intron 35.0%
GTCATGATCTTAAGAAGAGA+AGG + chr4_1:75729954-75729973 None:intergenic 35.0%
TTGAAGATCAATGCACTAGA+AGG - chr4_1:75730177-75730196 Msa0572780:CDS 35.0%
TTCAATATGTACGCTTGCTT+AGG - chr4_1:75730271-75730290 Msa0572780:intron 35.0%
CATTAATGTTAGGTAGGCAA+AGG + chr4_1:75730316-75730335 None:intergenic 35.0%
CTTTGCCTACCTAACATTAA+TGG - chr4_1:75730314-75730333 Msa0572780:CDS 35.0%
!!! ATCAACTTTTTTCCAAGCCT+AGG + chr4_1:75730583-75730602 None:intergenic 35.0%
TTAATTCATCCCCAAAGTCT+GGG - chr4_1:75730741-75730760 Msa0572780:CDS 35.0%
TTTATGTTTCCCAGACTTTG+GGG + chr4_1:75730753-75730772 None:intergenic 35.0%
GTTTATGTTTCCCAGACTTT+GGG + chr4_1:75730754-75730773 None:intergenic 35.0%
TGTTTATGTTTCCCAGACTT+TGG + chr4_1:75730755-75730774 None:intergenic 35.0%
CATGAAATTAAGCAGCTCAA+TGG - chr4_1:75731031-75731050 Msa0572780:CDS 35.0%
ATACAGGAAGAGTTTCAACT+TGG - chr4_1:75731161-75731180 Msa0572780:intron 35.0%
GAGTTTCAACTTGGCTTATT+CGG - chr4_1:75731170-75731189 Msa0572780:intron 35.0%
ACGAAAGAGCTAGATTATCA+AGG + chr4_1:75731535-75731554 None:intergenic 35.0%
!! AGGCTTTATTGAAAGAGATG+AGG - chr4_1:75731591-75731610 Msa0572780:intron 35.0%
AGAGATGAGGTATAACAATG+AGG - chr4_1:75731604-75731623 Msa0572780:intron 35.0%
!!! CGGTTTTTTAGAAAGAGCAA+GGG + chr4_1:75731759-75731778 None:intergenic 35.0%
! CCTTGCTCTTTCTAAAAAAC+CGG - chr4_1:75731757-75731776 Msa0572780:intron 35.0%
ATGGTGAATTCAGACATATC+CGG + chr4_1:75731779-75731798 None:intergenic 35.0%
!! AAATATCATTTTTCCGCCTC+TGG - chr4_1:75731809-75731828 Msa0572780:CDS 35.0%
ATTGATCCGGTTGTTTAGAA+AGG - chr4_1:75731882-75731901 Msa0572780:intron 35.0%
TTGATCCGGTTGTTTAGAAA+GGG - chr4_1:75731883-75731902 Msa0572780:intron 35.0%
TCTTTACAACTTGGACTCTT+TGG - chr4_1:75731961-75731980 Msa0572780:intron 35.0%
AAAGGACTTAGTTTCATGGT+CGG + chr4_1:75731988-75732007 None:intergenic 35.0%
ATTTAATAAAGCCGGTCCAA+AGG + chr4_1:75732006-75732025 None:intergenic 35.0%
TGTCTAAGTTACTTGTGTGA+TGG - chr4_1:75732108-75732127 Msa0572780:intron 35.0%
! TAAGTTACTTGTGTGATGGA+AGG - chr4_1:75732112-75732131 Msa0572780:intron 35.0%
ACTCCTAAGAGAATCTGATT+TGG - chr4_1:75732154-75732173 Msa0572780:intron 35.0%
GAACCAAATCAGATTCTCTT+AGG + chr4_1:75732160-75732179 None:intergenic 35.0%
!! AAATTGCAGAATCTAGCTCT+TGG - chr4_1:75732284-75732303 Msa0572780:intron 35.0%
!! AATTGCAGAATCTAGCTCTT+GGG - chr4_1:75732285-75732304 Msa0572780:intron 35.0%
! GAAGCTGATTTAAAAGGAGA+TGG - chr4_1:75732360-75732379 Msa0572780:intron 35.0%
! AGATGGACTTATTGATCAAG+AGG - chr4_1:75732377-75732396 Msa0572780:intron 35.0%
GACTTATTGATCAAGAGGAA+TGG - chr4_1:75732382-75732401 Msa0572780:intron 35.0%
CATTTCATGCATTTCCTTCT+AGG - chr4_1:75732479-75732498 Msa0572780:intron 35.0%
GTTAAGGGCAACTCTTAAAT+TGG + chr4_1:75732635-75732654 None:intergenic 35.0%
ATTTAAGAGTTGCCCTTAAC+AGG - chr4_1:75732635-75732654 Msa0572780:CDS 35.0%
TGTACGTGATACTTGTAGAT+TGG - chr4_1:75732726-75732745 Msa0572780:intron 35.0%
GCACTCAAAATGAAGTTCTT+AGG + chr4_1:75732828-75732847 None:intergenic 35.0%
CGTGACACTCAAATTAACAT+CGG - chr4_1:75732857-75732876 Msa0572780:CDS 35.0%
!! AGTTTAAGGCTATTTTGCGA+GGG + chr4_1:75733087-75733106 None:intergenic 35.0%
!! AAGTTTAAGGCTATTTTGCG+AGG + chr4_1:75733088-75733107 None:intergenic 35.0%
!! AGAACCTATGAGAAGTGTTT+GGG + chr4_1:75733258-75733277 None:intergenic 35.0%
!! AAGAACCTATGAGAAGTGTT+TGG + chr4_1:75733259-75733278 None:intergenic 35.0%
AATGTAAGATGATGCGAAAG+TGG - chr4_1:75733289-75733308 Msa0572780:intron 35.0%
ATGAACTCAATACTGACATG+TGG - chr4_1:75733484-75733503 Msa0572780:intron 35.0%
ACAATATCATTGTATCACCG+TGG + chr4_1:75733573-75733592 None:intergenic 35.0%
GATCTTAATATGCAGTTTCC+TGG - chr4_1:75733792-75733811 Msa0572780:intron 35.0%
GAAAGAAAATGTCTCTTCAG+AGG - chr4_1:75733864-75733883 Msa0572780:CDS 35.0%
TATTAGATCGCTCATCGAAT+TGG - chr4_1:75733992-75734011 Msa0572780:five_prime_UTR 35.0%
! AGAGTGCTACCTAACACAAT+AGG + chr4_1:75727797-75727816 None:intergenic 40.0%
GTACTTACATGATGTCTCCA+AGG + chr4_1:75727913-75727932 None:intergenic 40.0%
AGTTACTGTGAATGAGGTTG+AGG - chr4_1:75728306-75728325 Msa0572780:intron 40.0%
AGGATACATTGAGCATAGTG+AGG - chr4_1:75729113-75729132 Msa0572780:intron 40.0%
! GCAGCTTTGACAAAATCACA+TGG - chr4_1:75729191-75729210 Msa0572780:intron 40.0%
AAATCAACGTGAGTTTGGCA+AGG + chr4_1:75729294-75729313 None:intergenic 40.0%
!!! TGCCAAACTCACGTTGATTT+TGG - chr4_1:75729294-75729313 Msa0572780:intron 40.0%
CACCAAAATCAACGTGAGTT+TGG + chr4_1:75729299-75729318 None:intergenic 40.0%
!!! TTCTGTGCAGGTTTGGTTTT+GGG + chr4_1:75729375-75729394 None:intergenic 40.0%
!! ATTCTGTGCAGGTTTGGTTT+TGG + chr4_1:75729376-75729395 None:intergenic 40.0%
TAATGGCACACTGAAGTTGA+AGG - chr4_1:75729678-75729697 Msa0572780:intron 40.0%
! AGGTTGACTCAAAAGGAGAT+GGG - chr4_1:75729886-75729905 Msa0572780:intron 40.0%
AGGAGATGGGAAGATTGATA+TGG - chr4_1:75729899-75729918 Msa0572780:intron 40.0%
GGAAGATTGATATGGAAGAG+TGG - chr4_1:75729907-75729926 Msa0572780:intron 40.0%
! GACTCTGCCATATCTAAAGT+AGG - chr4_1:75729971-75729990 Msa0572780:intron 40.0%
AAATGAATGTTGTGCCTGTC+AGG - chr4_1:75730090-75730109 Msa0572780:intron 40.0%
AATGAATGTTGTGCCTGTCA+GGG - chr4_1:75730091-75730110 Msa0572780:intron 40.0%
TTGTTGCTAATCTTCCACCT+CGG + chr4_1:75730153-75730172 None:intergenic 40.0%
AGCAAGCGTACATATTGAAG+CGG + chr4_1:75730270-75730289 None:intergenic 40.0%
GTTTCAACATCAACAGTCCT+AGG - chr4_1:75730563-75730582 Msa0572780:CDS 40.0%
AGTTGATCACTTCATGTGCA+TGG - chr4_1:75730596-75730615 Msa0572780:intron 40.0%
GAACATATTCCAGCTCAAAG+TGG - chr4_1:75730618-75730637 Msa0572780:intron 40.0%
GAACATATGCCATATAGAGC+TGG + chr4_1:75730689-75730708 None:intergenic 40.0%
CGCAAGTGCACGTATATATA+CGG - chr4_1:75730718-75730737 Msa0572780:CDS 40.0%
GTTAATTCATCCCCAAAGTC+TGG - chr4_1:75730740-75730759 Msa0572780:CDS 40.0%
GTTTGTTCAGCAAGAATTGC+TGG + chr4_1:75730830-75730849 None:intergenic 40.0%
AGCAAGAAACAGAACCTCTT+TGG - chr4_1:75731197-75731216 Msa0572780:intron 40.0%
CTTTGACTAGACTTGTAAGC+AGG - chr4_1:75731334-75731353 Msa0572780:intron 40.0%
! CTCTTACAAGCTGTCTTTTG+TGG + chr4_1:75731452-75731471 None:intergenic 40.0%
CTCTATGATATACGGCAAAG+AGG - chr4_1:75731571-75731590 Msa0572780:intron 40.0%
!!! CCGGTTTTTTAGAAAGAGCA+AGG + chr4_1:75731760-75731779 None:intergenic 40.0%
ATCAAAATGCACCAATCCAG+AGG + chr4_1:75731828-75731847 None:intergenic 40.0%
ATCAATGCGGATTCACTAAC+GGG + chr4_1:75731868-75731887 None:intergenic 40.0%
GATCAATGCGGATTCACTAA+CGG + chr4_1:75731869-75731888 None:intergenic 40.0%
! TTAGTGAATCCGCATTGATC+CGG - chr4_1:75731869-75731888 Msa0572780:intron 40.0%
TCTAAACAACCGGATCAATG+CGG + chr4_1:75731881-75731900 None:intergenic 40.0%
TAGAGTCTTTGACACTAGTG+AGG - chr4_1:75731928-75731947 Msa0572780:intron 40.0%
GACCATGAAACTAAGTCCTT+TGG - chr4_1:75731987-75732006 Msa0572780:intron 40.0%
GTCCAAAGGACTTAGTTTCA+TGG + chr4_1:75731992-75732011 None:intergenic 40.0%
TGAAACTAAGTCCTTTGGAC+CGG - chr4_1:75731992-75732011 Msa0572780:CDS 40.0%
GAAGGTAAGAGAGATGATAC+TGG - chr4_1:75732130-75732149 Msa0572780:intron 40.0%
!!! ATCTAGCTCTTGGGATTTTC+TGG - chr4_1:75732294-75732313 Msa0572780:intron 40.0%
GTCTACTAACCCCTCTATAA+TGG - chr4_1:75732323-75732342 Msa0572780:intron 40.0%
! AATGCCTGTGCCATTATAGA+GGG + chr4_1:75732336-75732355 None:intergenic 40.0%
! AAATGCCTGTGCCATTATAG+AGG + chr4_1:75732337-75732356 None:intergenic 40.0%
CTCAAAATCCATCCTTACTG+AGG - chr4_1:75732418-75732437 Msa0572780:intron 40.0%
GTCATATTCCTCAGTAAGGA+TGG + chr4_1:75732429-75732448 None:intergenic 40.0%
! TTTCCTTCTAGGAGTCTTTG+TGG - chr4_1:75732490-75732509 Msa0572780:intron 40.0%
TATCCACAAAGACTCCTAGA+AGG + chr4_1:75732496-75732515 None:intergenic 40.0%
! TTCTAGGAGTCTTTGTGGAT+AGG - chr4_1:75732495-75732514 Msa0572780:intron 40.0%
TGATGAGGATAATGTAACCG+TGG + chr4_1:75732684-75732703 None:intergenic 40.0%
!! TAAGTTGTTTGGCACTGATG+AGG + chr4_1:75732699-75732718 None:intergenic 40.0%
GTTAAAACCTACCAACGACA+AGG + chr4_1:75732891-75732910 None:intergenic 40.0%
! GAAGTTATGATGGGATGAGA+GGG + chr4_1:75733026-75733045 None:intergenic 40.0%
! TGAAGTTATGATGGGATGAG+AGG + chr4_1:75733027-75733046 None:intergenic 40.0%
! TATGCATGTTTCTGCTAGAC+TGG - chr4_1:75733179-75733198 Msa0572780:intron 40.0%
ATGCAAGATATCAGGATGCA+TGG - chr4_1:75733217-75733236 Msa0572780:intron 40.0%
!! TATGAGAAGTGTTTGGGTTG+TGG + chr4_1:75733252-75733271 None:intergenic 40.0%
ACAACCCAAACACTTCTCAT+AGG - chr4_1:75733251-75733270 Msa0572780:intron 40.0%
!! CTCTGAAGTTTAGAAGGTGT+TGG + chr4_1:75733445-75733464 None:intergenic 40.0%
!! GCTAGACTCTGAAGTTTAGA+AGG + chr4_1:75733451-75733470 None:intergenic 40.0%
! ACTTGCCTTTGGAAATTGCA+GGG - chr4_1:75733770-75733789 Msa0572780:intron 40.0%
AAGATCCCTGCAATTTCCAA+AGG + chr4_1:75733778-75733797 None:intergenic 40.0%
TCTGATACCAGTTCAAAACC+AGG + chr4_1:75733813-75733832 None:intergenic 40.0%
GTGTCAGGTCCTATTGTGTT+AGG - chr4_1:75727785-75727804 Msa0572780:three_prime_UTR 45.0%
ACAATCCTCCATTCTTGCCT+TGG - chr4_1:75727893-75727912 Msa0572780:exon 45.0%
TGATGTCTCCAAGGCAAGAA+TGG + chr4_1:75727904-75727923 None:intergenic 45.0%
!! TGATGATGGCTGCATTCACA+AGG - chr4_1:75728369-75728388 Msa0572780:intron 45.0%
AGCAGAATCTACTTGCAAGC+AGG - chr4_1:75728631-75728650 Msa0572780:intron 45.0%
GCAGAATCTACTTGCAAGCA+GGG - chr4_1:75728632-75728651 Msa0572780:intron 45.0%
CAATGTATCCTGTCTTCCCA+AGG + chr4_1:75729104-75729123 None:intergenic 45.0%
! ACCCTTTAGGAGATAGAGTG+CGG - chr4_1:75729251-75729270 Msa0572780:intron 45.0%
!!! TTTGGTTTTGGGGGTAGCAT+TGG + chr4_1:75729364-75729383 None:intergenic 45.0%
!!! TCTGTGCAGGTTTGGTTTTG+GGG + chr4_1:75729374-75729393 None:intergenic 45.0%
CACACTGAAGTTGAAGGAGA+TGG - chr4_1:75729684-75729703 Msa0572780:intron 45.0%
GAAGTTGAAGGAGATGGTCT+TGG - chr4_1:75729690-75729709 Msa0572780:intron 45.0%
! ATGGAGGAGGTTGACTCAAA+AGG - chr4_1:75729879-75729898 Msa0572780:intron 45.0%
! GAGGTTGACTCAAAAGGAGA+TGG - chr4_1:75729885-75729904 Msa0572780:intron 45.0%
GCCTGTCAGGGATATAACTA+TGG - chr4_1:75730103-75730122 Msa0572780:intron 45.0%
GCCATAGTTATATCCCTGAC+AGG + chr4_1:75730107-75730126 None:intergenic 45.0%
TCGGTGTGCAAAACAAAGCT+GGG + chr4_1:75730134-75730153 None:intergenic 45.0%
ATGTACGCTTGCTTAGGCTT+AGG - chr4_1:75730277-75730296 Msa0572780:intron 45.0%
AACATCAACAGTCCTAGGCT+TGG - chr4_1:75730568-75730587 Msa0572780:CDS 45.0%
CATATTCCAGCTCAAAGTGG+TGG - chr4_1:75730621-75730640 Msa0572780:intron 45.0%
TTGTATCCACCACTTTGAGC+TGG + chr4_1:75730630-75730649 None:intergenic 45.0%
GAGCATCAAACCAACTTGTG+TGG - chr4_1:75730652-75730671 Msa0572780:intron 45.0%
GTAGCAGTATCCACACAAGT+TGG + chr4_1:75730665-75730684 None:intergenic 45.0%
ACTGCTACACCAGCTCTATA+TGG - chr4_1:75730677-75730696 Msa0572780:intron 45.0%
AGCAGCTCAATGGTCAATGA+TGG - chr4_1:75731041-75731060 Msa0572780:CDS 45.0%
GCAGCTCAATGGTCAATGAT+GGG - chr4_1:75731042-75731061 Msa0572780:CDS 45.0%
! CAAGCTGTCTTTTGTGGTTG+AGG + chr4_1:75731446-75731465 None:intergenic 45.0%
!! TCATTTTTCCGCCTCTGGAT+TGG - chr4_1:75731814-75731833 Msa0572780:CDS 45.0%
AAAATGCACCAATCCAGAGG+CGG + chr4_1:75731825-75731844 None:intergenic 45.0%
TCCGGTTGTTTAGAAAGGGT+TGG - chr4_1:75731887-75731906 Msa0572780:intron 45.0%
CCCAACCCTTTCTAAACAAC+CGG + chr4_1:75731891-75731910 None:intergenic 45.0%
CCGGTTGTTTAGAAAGGGTT+GGG - chr4_1:75731888-75731907 Msa0572780:intron 45.0%
CGGTTGTTTAGAAAGGGTTG+GGG - chr4_1:75731889-75731908 Msa0572780:intron 45.0%
GGTTGTTTAGAAAGGGTTGG+GGG - chr4_1:75731890-75731909 Msa0572780:intron 45.0%
TAACCCCTCTATAATGGCAC+AGG - chr4_1:75732329-75732348 Msa0572780:intron 45.0%
! ATGCCTGTGCCATTATAGAG+GGG + chr4_1:75732335-75732354 None:intergenic 45.0%
ATGTAACCGTGGTACCACAA+AGG + chr4_1:75732673-75732692 None:intergenic 45.0%
ATGATTGCCTTGTCGTTGGT+AGG - chr4_1:75732881-75732900 Msa0572780:intron 45.0%
ATATGGCATCAATGTCAGCG+AGG - chr4_1:75733060-75733079 Msa0572780:intron 45.0%
AATTGAGGATCCCACACTCT+CGG - chr4_1:75733133-75733152 Msa0572780:CDS 45.0%
CAATACTGACATGTGGCATG+TGG - chr4_1:75733491-75733510 Msa0572780:intron 45.0%
! CACTTGCCTTTGGAAATTGC+AGG - chr4_1:75733769-75733788 Msa0572780:intron 45.0%
!!! GCAGTTTCCTGGTTTTGAAC+TGG - chr4_1:75733803-75733822 Msa0572780:intron 45.0%
!!! TAAATATAAAAAATTTTGTT+TGG - chr4_1:75730426-75730445 Msa0572780:intron 5.0%
TGTCTCCAAGGCAAGAATGG+AGG + chr4_1:75727901-75727920 None:intergenic 50.0%
CTGTTTGACCTTGGGAAGAC+AGG - chr4_1:75729093-75729112 Msa0572780:intron 50.0%
CCCGCACTCTATCTCCTAAA+GGG + chr4_1:75729255-75729274 None:intergenic 50.0%
! CCCTTTAGGAGATAGAGTGC+GGG - chr4_1:75729252-75729271 Msa0572780:intron 50.0%
ACCCGCACTCTATCTCCTAA+AGG + chr4_1:75729256-75729275 None:intergenic 50.0%
TAGGAGATAGAGTGCGGGTT+TGG - chr4_1:75729257-75729276 Msa0572780:intron 50.0%
AGAGTGCGGGTTTGGATTCA+CGG - chr4_1:75729265-75729284 Msa0572780:intron 50.0%
!!! CTGTGCAGGTTTGGTTTTGG+GGG + chr4_1:75729373-75729392 None:intergenic 50.0%
! CTCGGTGTGCAAAACAAAGC+TGG + chr4_1:75730135-75730154 None:intergenic 50.0%
!!! CAGCTTTGTTTTGCACACCG+AGG - chr4_1:75730133-75730152 Msa0572780:intron 50.0%
!!! CTTTGTTTTGCACACCGAGG+TGG - chr4_1:75730136-75730155 Msa0572780:intron 50.0%
CTTGCACCAAACCGCGATTT+CGG - chr4_1:75730795-75730814 Msa0572780:intron 50.0%
TTCATGCCGAAATCGCGGTT+TGG + chr4_1:75730804-75730823 None:intergenic 50.0%
GGATCTTCATGCCGAAATCG+CGG + chr4_1:75730809-75730828 None:intergenic 50.0%
AACAGAACCTCTTTGGCGAC+AGG - chr4_1:75731204-75731223 Msa0572780:intron 50.0%
ACAGAACCTCTTTGGCGACA+GGG - chr4_1:75731205-75731224 Msa0572780:intron 50.0%
AAGGGGCGATGACCTGTTAA+GGG + chr4_1:75732650-75732669 None:intergenic 50.0%
ACCGTGGTACCACAAAGGAA+GGG + chr4_1:75732668-75732687 None:intergenic 50.0%
AACCGTGGTACCACAAAGGA+AGG + chr4_1:75732669-75732688 None:intergenic 50.0%
CGGTATGATTGCCTTGTCGT+TGG - chr4_1:75732877-75732896 Msa0572780:intron 50.0%
! GTTGAGATTGCCGAGAGTGT+GGG + chr4_1:75733146-75733165 None:intergenic 50.0%
AGTTGAGATTGCCGAGAGTG+TGG + chr4_1:75733147-75733166 None:intergenic 50.0%
!!! TTTTGTGGTTGAGGCGCTGC+TGG + chr4_1:75731437-75731456 None:intergenic 55.0%
GAAGGGGCGATGACCTGTTA+AGG + chr4_1:75732651-75732670 None:intergenic 55.0%
CCGTGGTACCACAAAGGAAG+GGG + chr4_1:75732667-75732686 None:intergenic 55.0%
CCCCTTCCTTTGTGGTACCA+CGG - chr4_1:75732664-75732683 Msa0572780:intron 55.0%
TGCTGACCCTGTCGCCAAAG+AGG + chr4_1:75731214-75731233 None:intergenic 60.0%
GGTCATCGCCCCTTCCTTTG+TGG - chr4_1:75732656-75732675 Msa0572780:CDS 60.0%
!! GTGGTTGAGGCGCTGCTGGA+TGG + chr4_1:75731433-75731452 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75727671 75734092 75727671 ID=Msa0572780;Name=Msa0572780
chr4_1 mRNA 75727671 75734092 75727671 ID=Msa0572780-mRNA-1;Parent=Msa0572780;Name=Msa0572780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=175|0.92|0.93|1|0.92|0.93|15|229|449
chr4_1 exon 75727671 75727972 75727671 ID=Msa0572780-mRNA-1:exon:26308;Parent=Msa0572780-mRNA-1
chr4_1 exon 75729300 75729412 75729300 ID=Msa0572780-mRNA-1:exon:26307;Parent=Msa0572780-mRNA-1
chr4_1 exon 75729549 75729629 75729549 ID=Msa0572780-mRNA-1:exon:26306;Parent=Msa0572780-mRNA-1
chr4_1 exon 75730151 75730203 75730151 ID=Msa0572780-mRNA-1:exon:26305;Parent=Msa0572780-mRNA-1
chr4_1 exon 75730299 75730407 75730299 ID=Msa0572780-mRNA-1:exon:26304;Parent=Msa0572780-mRNA-1
chr4_1 exon 75730537 75730596 75730537 ID=Msa0572780-mRNA-1:exon:26303;Parent=Msa0572780-mRNA-1
chr4_1 exon 75730687 75730769 75730687 ID=Msa0572780-mRNA-1:exon:26302;Parent=Msa0572780-mRNA-1
chr4_1 exon 75730909 75731108 75730909 ID=Msa0572780-mRNA-1:exon:26301;Parent=Msa0572780-mRNA-1
chr4_1 exon 75731775 75731887 75731775 ID=Msa0572780-mRNA-1:exon:26300;Parent=Msa0572780-mRNA-1
chr4_1 exon 75731989 75732069 75731989 ID=Msa0572780-mRNA-1:exon:26299;Parent=Msa0572780-mRNA-1
chr4_1 exon 75732629 75732681 75732629 ID=Msa0572780-mRNA-1:exon:26298;Parent=Msa0572780-mRNA-1
chr4_1 exon 75732768 75732876 75732768 ID=Msa0572780-mRNA-1:exon:26297;Parent=Msa0572780-mRNA-1
chr4_1 exon 75733110 75733169 75733110 ID=Msa0572780-mRNA-1:exon:26296;Parent=Msa0572780-mRNA-1
chr4_1 exon 75733373 75733455 75733373 ID=Msa0572780-mRNA-1:exon:26295;Parent=Msa0572780-mRNA-1
chr4_1 exon 75733839 75734092 75733839 ID=Msa0572780-mRNA-1:exon:26294;Parent=Msa0572780-mRNA-1
chr4_1 five_prime_UTR 75733918 75734092 75733918 ID=Msa0572780-mRNA-1:five_prime_utr;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75733839 75733917 75733839 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75733373 75733455 75733373 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75733110 75733169 75733110 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75732768 75732876 75732768 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75732629 75732681 75732629 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75731989 75732069 75731989 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75731775 75731887 75731775 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75730909 75731108 75730909 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75730687 75730769 75730687 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75730537 75730596 75730537 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75730299 75730407 75730299 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75730151 75730203 75730151 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75729549 75729629 75729549 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75729300 75729412 75729300 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 CDS 75727900 75727972 75727900 ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1
chr4_1 three_prime_UTR 75727671 75727899 75727671 ID=Msa0572780-mRNA-1:three_prime_utr;Parent=Msa0572780-mRNA-1
Gene Sequence

>Msa0572780

ATGAGCTGTTTTTGCTTGATGAAAGGCAAACCAAAAACTAAGCAAGAACAATCCTCCATTCTTGCCTTGGAGACATCATTTACTGTGAATGAGGTTGAGGCTTTACTTGACTTGTTTAAGAAACTAAGTAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTCCAACTCGCACTTTTCAGAAATAAGAGCAAGCAGAATCTACTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGCGTAACGGAGTAATTGAATTTGGAGAATTTGTTCGCTCACTAAGCATTTTTCATCCAAAGACATCTGAAGAGAAGAAAATTGAATTTGCATTTAAACTGTTTGACCTTGGGAAGACAGGATACATTGAGCATAGTGAGTTGAAGGAGATGGTCTTGGCTACTTTGACTGAATCAGAAGTTACAGTTTCAGACGATATTGTTGAATCCATTGTGGAAAAGACAATGGAGGAGGTTGACTCAAAAGGAGATGGGAAGATTGATATGGAAGAGTGGAAAGCGTATGCAACAAAGAATCCTTCTCTTCTTAAGATCATGACTCTGCCATATCTAAACATCAAACCAACTTGTGTGGATACTGCTACACCAGCTCTATATGGCATATGTTCTAGTCAAATCGCAAGTGCACGTATATATACGGTTAATTCATCCCCAAAGTCTGGGAAACATAAACAAGTCTTTTTGATGGGGTGTGCTTGCACCAAACCGCGATTTCGGCATGAAGATCCAGCAATTCTTGCTGAACAAACTTATTTTAATGTTTCTGAAATTGAAGCATTATATGATCTCTTCATGAAATTAAGCAGCTCAATGGTCAATGATGGGCTAATTAGCAAAGAAGAGTTTCAACTTGGCTTATTCGGAAGCAGCAAGAAACAGAACCTCTTTGGCGACAGGGTGTTCAATATATTTGACTCAAAAAATGATGGTATGATAGATTTTGGAGAGTTTGTTAAAGCTTTAAGCGTTTTCCATCCAGCAGCGCCTCAACCACAAAAGACAGCTTTTGCATTTCGACTCTATGATATACGGCAAAGAGGCTTTATTGAAAGAGATGAGGTAAGAGAGATGATACTGGCACTCCTAAGAGAATCTGATTTGGTTCTTTCTCATGATATAATTGAGGTCATAATTGATAAGGCATTTCAAGAAGCTGATTTAAAAGGAGATGGACTTATTGATCAAGAGGAATGGGAAAGTTTTGTTGCTCAAAATCCATCCTTACTGAGGAATATGACAATTCCATATCTAAAGGATCTTAATATGCAGTTTCCTGGTTTTGAACTGGTATCAGATATTGAAGATAACACAATCGGCATTCCATGA

Protein sequence

>Msa0572780

MSCFCLMKGKPKTKQEQSSILALETSFTVNEVEALLDLFKKLSSSIIDDGCIHKEEFQLALFRNKSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPKTSEEKKIEFAFKLFDLGKTGYIEHSELKEMVLATLTESEVTVSDDIVESIVEKTMEEVDSKGDGKIDMEEWKAYATKNPSLLKIMTLPYLNIKPTCVDTATPALYGICSSQIASARIYTVNSSPKSGKHKQVFLMGCACTKPRFRHEDPAILAEQTYFNVSEIEALYDLFMKLSSSMVNDGLISKEEFQLGLFGSSKKQNLFGDRVFNIFDSKNDGMIDFGEFVKALSVFHPAAPQPQKTAFAFRLYDIRQRGFIERDEVREMILALLRESDLVLSHDIIEVIIDKAFQEADLKGDGLIDQEEWESFVAQNPSLLRNMTIPYLKDLNMQFPGFELVSDIEDNTIGIP*