Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572780 | XP_014507072.2 | 67.184 | 451 | 135 | 2 | 1 | 445 | 5 | 448 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572780 | sp|Q3HRP0|CNBL7_ORYSJ | 58.571 | 210 | 84 | 1 | 237 | 443 | 1 | 210 | 4.91e-86 | 265 |
| Msa0572780 | sp|Q3HRP0|CNBL7_ORYSJ | 62.500 | 192 | 72 | 0 | 1 | 192 | 1 | 192 | 1.66e-78 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572780 | A0A1S3UM44 | 67.184 | 451 | 135 | 2 | 1 | 445 | 5 | 448 | 0.0 | 604 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0572780 | Msa0734250 | 0.800333 | 1.514247e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572780 | MtrunA17_Chr8g0388331 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 1.82e-132 | 380 |
| Msa0572780 | MtrunA17_Chr8g0388331 | 52.381 | 210 | 97 | 1 | 237 | 443 | 1 | 210 | 1.47e-77 | 240 |
| Msa0572780 | MtrunA17_Chr8g0388321 | 79.679 | 187 | 13 | 2 | 192 | 369 | 1 | 171 | 9.09e-99 | 293 |
| Msa0572780 | MtrunA17_Chr8g0388321 | 42.754 | 138 | 51 | 3 | 1 | 129 | 46 | 164 | 1.74e-26 | 105 |
| Msa0572780 | MtrunA17_Chr4g0076551 | 57.436 | 195 | 83 | 0 | 249 | 443 | 32 | 226 | 5.71e-79 | 244 |
| Msa0572780 | MtrunA17_Chr4g0076551 | 58.382 | 173 | 72 | 0 | 20 | 192 | 36 | 208 | 2.89e-68 | 217 |
| Msa0572780 | MtrunA17_Chr5g0446931 | 57.653 | 196 | 83 | 0 | 249 | 444 | 31 | 226 | 1.38e-78 | 243 |
| Msa0572780 | MtrunA17_Chr5g0446931 | 57.377 | 183 | 78 | 0 | 10 | 192 | 25 | 207 | 1.04e-68 | 218 |
| Msa0572780 | MtrunA17_Chr3g0102821 | 57.949 | 195 | 82 | 0 | 249 | 443 | 31 | 225 | 3.31e-78 | 242 |
| Msa0572780 | MtrunA17_Chr3g0102821 | 57.627 | 177 | 75 | 0 | 16 | 192 | 31 | 207 | 1.08e-67 | 215 |
| Msa0572780 | MtrunA17_Chr4g0055421 | 53.810 | 210 | 94 | 1 | 237 | 443 | 1 | 210 | 5.62e-77 | 239 |
| Msa0572780 | MtrunA17_Chr4g0055421 | 55.208 | 192 | 86 | 0 | 1 | 192 | 1 | 192 | 6.01e-74 | 231 |
| Msa0572780 | MtrunA17_Chr8g0346911 | 47.107 | 242 | 111 | 3 | 210 | 444 | 3 | 234 | 2.48e-73 | 230 |
| Msa0572780 | MtrunA17_Chr8g0346911 | 62.712 | 177 | 66 | 0 | 16 | 192 | 39 | 215 | 8.27e-73 | 229 |
| Msa0572780 | MtrunA17_Chr1g0151621 | 62.791 | 172 | 64 | 0 | 21 | 192 | 60 | 231 | 7.43e-70 | 222 |
| Msa0572780 | MtrunA17_Chr1g0151621 | 56.044 | 182 | 80 | 0 | 254 | 435 | 60 | 241 | 5.59e-69 | 219 |
| Msa0572780 | MtrunA17_Chr2g0290771 | 54.098 | 183 | 84 | 0 | 262 | 444 | 9 | 191 | 7.34e-69 | 217 |
| Msa0572780 | MtrunA17_Chr2g0290771 | 53.226 | 186 | 83 | 1 | 21 | 206 | 1 | 182 | 5.05e-63 | 202 |
| Msa0572780 | MtrunA17_Chr2g0290751 | 51.412 | 177 | 86 | 0 | 249 | 425 | 34 | 210 | 1.42e-62 | 201 |
| Msa0572780 | MtrunA17_Chr2g0290751 | 53.297 | 182 | 85 | 0 | 11 | 192 | 29 | 210 | 2.11e-60 | 196 |
| Msa0572780 | MtrunA17_Chr8g0341941 | 53.684 | 190 | 88 | 0 | 254 | 443 | 66 | 255 | 2.03e-62 | 202 |
| Msa0572780 | MtrunA17_Chr8g0341941 | 57.558 | 172 | 73 | 0 | 21 | 192 | 66 | 237 | 2.37e-58 | 192 |
| Msa0572780 | MtrunA17_Chr2g0290761 | 50.847 | 177 | 87 | 0 | 249 | 425 | 34 | 210 | 2.70e-61 | 198 |
| Msa0572780 | MtrunA17_Chr2g0290761 | 51.042 | 192 | 92 | 1 | 3 | 192 | 19 | 210 | 1.23e-59 | 194 |
| Msa0572780 | MtrunA17_Chr2g0290781 | 47.368 | 190 | 100 | 0 | 254 | 443 | 41 | 230 | 1.81e-60 | 197 |
| Msa0572780 | MtrunA17_Chr2g0290781 | 55.030 | 169 | 76 | 0 | 24 | 192 | 44 | 212 | 3.13e-57 | 189 |
| Msa0572780 | MtrunA17_Chr8g0388311 | 94.118 | 85 | 5 | 0 | 365 | 449 | 1 | 85 | 1.27e-50 | 166 |
| Msa0572780 | MtrunA17_Chr8g0388311 | 49.180 | 61 | 31 | 0 | 132 | 192 | 1 | 61 | 8.37e-15 | 69.7 |
| Msa0572780 | MtrunA17_Chr3g0126801 | 60.377 | 106 | 42 | 0 | 343 | 448 | 4 | 109 | 2.95e-42 | 145 |
| Msa0572780 | MtrunA17_Chr3g0126801 | 59.756 | 82 | 33 | 0 | 112 | 193 | 6 | 87 | 4.55e-29 | 110 |
| Msa0572780 | MtrunA17_Chr3g0126811 | 65.455 | 110 | 37 | 1 | 1 | 109 | 1 | 110 | 1.22e-41 | 144 |
| Msa0572780 | MtrunA17_Chr3g0126811 | 53.448 | 116 | 50 | 1 | 237 | 348 | 1 | 116 | 4.80e-36 | 129 |
| Msa0572780 | MtrunA17_Chr4g0063121 | 42.945 | 163 | 73 | 1 | 30 | 192 | 7 | 149 | 8.06e-41 | 145 |
| Msa0572780 | MtrunA17_Chr4g0063121 | 38.043 | 184 | 94 | 1 | 263 | 446 | 7 | 170 | 1.24e-37 | 136 |
| Msa0572780 | MtrunA17_Chr5g0399921 | 53.043 | 115 | 53 | 1 | 1 | 115 | 1 | 114 | 2.93e-35 | 127 |
| Msa0572780 | MtrunA17_Chr5g0399921 | 57.009 | 107 | 44 | 1 | 237 | 341 | 1 | 107 | 8.27e-35 | 125 |
| Msa0572780 | MtrunA17_Chr5g0399931 | 55.738 | 61 | 27 | 0 | 132 | 192 | 1 | 61 | 3.54e-17 | 76.3 |
| Msa0572780 | MtrunA17_Chr5g0399931 | 53.521 | 71 | 33 | 0 | 365 | 435 | 1 | 71 | 2.78e-15 | 70.9 |
| Msa0572780 | MtrunA17_Chr4g0059951 | 30.488 | 164 | 96 | 5 | 16 | 175 | 360 | 509 | 1.74e-11 | 66.2 |
| Msa0572780 | MtrunA17_Chr1g0188171 | 36.719 | 128 | 68 | 5 | 49 | 173 | 25 | 142 | 9.67e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572780 | AT5G24270.4 | 58.252 | 206 | 79 | 1 | 237 | 435 | 1 | 206 | 5.47e-85 | 260 |
| Msa0572780 | AT5G24270.4 | 58.081 | 198 | 79 | 1 | 16 | 213 | 20 | 213 | 4.87e-76 | 237 |
| Msa0572780 | AT5G24270.1 | 58.252 | 206 | 79 | 1 | 237 | 435 | 1 | 206 | 5.47e-85 | 260 |
| Msa0572780 | AT5G24270.1 | 58.081 | 198 | 79 | 1 | 16 | 213 | 20 | 213 | 4.87e-76 | 237 |
| Msa0572780 | AT5G24270.2 | 58.252 | 206 | 79 | 1 | 237 | 435 | 1 | 206 | 5.47e-85 | 260 |
| Msa0572780 | AT5G24270.2 | 58.081 | 198 | 79 | 1 | 16 | 213 | 20 | 213 | 4.87e-76 | 237 |
| Msa0572780 | AT5G24270.5 | 61.798 | 178 | 68 | 0 | 258 | 435 | 4 | 181 | 9.56e-79 | 243 |
| Msa0572780 | AT5G24270.5 | 58.730 | 189 | 74 | 1 | 25 | 213 | 4 | 188 | 3.82e-74 | 231 |
| Msa0572780 | AT1G64480.4 | 65.104 | 192 | 67 | 0 | 1 | 192 | 5 | 196 | 2.64e-78 | 242 |
| Msa0572780 | AT1G64480.4 | 56.284 | 183 | 79 | 1 | 244 | 426 | 16 | 197 | 1.58e-68 | 217 |
| Msa0572780 | AT1G64480.2 | 65.104 | 192 | 67 | 0 | 1 | 192 | 5 | 196 | 5.00e-78 | 242 |
| Msa0572780 | AT1G64480.2 | 55.000 | 200 | 89 | 1 | 244 | 443 | 16 | 214 | 4.30e-74 | 232 |
| Msa0572780 | AT1G64480.3 | 65.104 | 192 | 67 | 0 | 1 | 192 | 5 | 196 | 5.00e-78 | 242 |
| Msa0572780 | AT1G64480.3 | 55.000 | 200 | 89 | 1 | 244 | 443 | 16 | 214 | 4.30e-74 | 232 |
| Msa0572780 | AT1G64480.1 | 65.104 | 192 | 67 | 0 | 1 | 192 | 5 | 196 | 5.00e-78 | 242 |
| Msa0572780 | AT1G64480.1 | 55.000 | 200 | 89 | 1 | 244 | 443 | 16 | 214 | 4.30e-74 | 232 |
| Msa0572780 | AT4G26570.1 | 57.949 | 195 | 82 | 0 | 250 | 444 | 32 | 226 | 2.12e-77 | 241 |
| Msa0572780 | AT4G26570.1 | 57.803 | 173 | 73 | 0 | 20 | 192 | 35 | 207 | 1.88e-66 | 213 |
| Msa0572780 | AT5G55990.1 | 57.436 | 195 | 83 | 0 | 250 | 444 | 32 | 226 | 4.68e-76 | 237 |
| Msa0572780 | AT5G55990.1 | 52.083 | 192 | 92 | 0 | 1 | 192 | 16 | 207 | 1.99e-64 | 207 |
| Msa0572780 | AT5G55990.2 | 57.436 | 195 | 83 | 0 | 250 | 444 | 32 | 226 | 4.68e-76 | 237 |
| Msa0572780 | AT5G55990.2 | 52.083 | 192 | 92 | 0 | 1 | 192 | 16 | 207 | 1.99e-64 | 207 |
| Msa0572780 | AT4G26570.2 | 56.784 | 199 | 82 | 1 | 250 | 444 | 32 | 230 | 3.48e-75 | 235 |
| Msa0572780 | AT4G26570.2 | 56.497 | 177 | 73 | 1 | 20 | 192 | 35 | 211 | 2.69e-64 | 207 |
| Msa0572780 | AT5G47100.1 | 52.857 | 210 | 96 | 1 | 237 | 443 | 1 | 210 | 4.57e-75 | 234 |
| Msa0572780 | AT5G47100.1 | 55.208 | 192 | 86 | 0 | 1 | 192 | 1 | 192 | 3.00e-72 | 227 |
| Msa0572780 | AT4G17615.4 | 52.857 | 210 | 96 | 2 | 237 | 443 | 1 | 210 | 3.25e-74 | 232 |
| Msa0572780 | AT4G17615.4 | 55.729 | 192 | 85 | 0 | 1 | 192 | 1 | 192 | 4.92e-72 | 226 |
| Msa0572780 | AT4G17615.1 | 52.857 | 210 | 96 | 2 | 237 | 443 | 1 | 210 | 3.25e-74 | 232 |
| Msa0572780 | AT4G17615.1 | 55.729 | 192 | 85 | 0 | 1 | 192 | 1 | 192 | 4.92e-72 | 226 |
| Msa0572780 | AT4G17615.5 | 52.857 | 210 | 96 | 2 | 237 | 443 | 1 | 210 | 3.25e-74 | 232 |
| Msa0572780 | AT4G17615.5 | 55.729 | 192 | 85 | 0 | 1 | 192 | 1 | 192 | 4.92e-72 | 226 |
| Msa0572780 | AT4G33000.2 | 53.398 | 206 | 95 | 1 | 239 | 443 | 41 | 246 | 1.51e-72 | 229 |
| Msa0572780 | AT4G33000.2 | 52.683 | 205 | 92 | 2 | 3 | 206 | 38 | 238 | 2.31e-64 | 207 |
| Msa0572780 | AT4G33000.1 | 53.398 | 206 | 95 | 1 | 239 | 443 | 51 | 256 | 2.12e-72 | 229 |
| Msa0572780 | AT4G33000.1 | 52.683 | 205 | 92 | 2 | 3 | 206 | 48 | 248 | 4.11e-64 | 207 |
| Msa0572780 | AT4G17615.3 | 54.271 | 199 | 91 | 0 | 1 | 199 | 1 | 199 | 4.86e-72 | 228 |
| Msa0572780 | AT4G17615.3 | 54.922 | 193 | 84 | 2 | 237 | 426 | 1 | 193 | 4.91e-69 | 220 |
| Msa0572780 | AT4G01420.1 | 53.234 | 201 | 92 | 1 | 237 | 435 | 1 | 201 | 9.15e-71 | 223 |
| Msa0572780 | AT4G01420.1 | 45.771 | 201 | 108 | 1 | 1 | 201 | 1 | 200 | 2.25e-52 | 175 |
| Msa0572780 | AT4G01420.2 | 53.646 | 192 | 87 | 1 | 237 | 426 | 1 | 192 | 2.50e-68 | 216 |
| Msa0572780 | AT4G01420.2 | 46.875 | 192 | 101 | 1 | 1 | 192 | 1 | 191 | 3.34e-52 | 174 |
| Msa0572780 | AT5G24270.3 | 60.131 | 153 | 61 | 0 | 283 | 435 | 7 | 159 | 2.03e-65 | 208 |
| Msa0572780 | AT5G24270.3 | 54.375 | 160 | 69 | 1 | 54 | 213 | 11 | 166 | 3.04e-58 | 189 |
| Msa0572780 | AT4G16350.2 | 48.544 | 206 | 102 | 1 | 230 | 435 | 10 | 211 | 2.60e-62 | 202 |
| Msa0572780 | AT4G16350.2 | 49.468 | 188 | 90 | 2 | 5 | 192 | 19 | 201 | 1.53e-56 | 187 |
| Msa0572780 | AT4G16350.1 | 48.544 | 206 | 102 | 1 | 230 | 435 | 10 | 211 | 2.60e-62 | 202 |
| Msa0572780 | AT4G16350.1 | 49.468 | 188 | 90 | 2 | 5 | 192 | 19 | 201 | 1.53e-56 | 187 |
| Msa0572780 | AT4G17615.2 | 57.554 | 139 | 59 | 0 | 54 | 192 | 12 | 150 | 1.72e-54 | 179 |
| Msa0572780 | AT4G17615.2 | 50.955 | 157 | 77 | 0 | 287 | 443 | 12 | 168 | 1.63e-53 | 177 |
| Msa0572780 | AT5G47100.2 | 52.564 | 156 | 74 | 0 | 1 | 156 | 1 | 156 | 2.84e-53 | 176 |
| Msa0572780 | AT5G47100.2 | 54.140 | 157 | 69 | 1 | 237 | 390 | 1 | 157 | 4.53e-53 | 176 |
| Msa0572780 | AT4G26560.1 | 44.503 | 191 | 93 | 2 | 266 | 443 | 23 | 213 | 2.44e-51 | 173 |
| Msa0572780 | AT4G26560.1 | 41.040 | 173 | 89 | 2 | 33 | 192 | 23 | 195 | 2.69e-38 | 138 |
| Msa0572780 | AT4G33000.4 | 55.263 | 152 | 67 | 1 | 239 | 389 | 41 | 192 | 5.79e-51 | 171 |
| Msa0572780 | AT4G33000.4 | 52.903 | 155 | 72 | 1 | 3 | 156 | 38 | 192 | 2.53e-47 | 162 |
| Msa0572780 | AT4G33000.6 | 55.263 | 152 | 67 | 1 | 239 | 389 | 41 | 192 | 5.79e-51 | 171 |
| Msa0572780 | AT4G33000.6 | 52.903 | 155 | 72 | 1 | 3 | 156 | 38 | 192 | 2.53e-47 | 162 |
| Msa0572780 | AT4G33000.5 | 55.629 | 151 | 66 | 1 | 239 | 388 | 41 | 191 | 8.90e-51 | 171 |
| Msa0572780 | AT4G33000.5 | 52.564 | 156 | 73 | 1 | 3 | 157 | 38 | 193 | 4.42e-47 | 162 |
| Msa0572780 | AT4G33000.3 | 55.963 | 109 | 47 | 1 | 3 | 110 | 38 | 146 | 4.14e-31 | 117 |
| Msa0572780 | AT4G33000.3 | 53.333 | 105 | 48 | 1 | 239 | 342 | 41 | 145 | 2.53e-29 | 112 |
Find 82 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATGGTATGATAGATTT+TGG | 0.172169 | 4_1:-75730361 | Msa0572780:CDS |
| CTTGAATGATTATTTGATTT+TGG | 0.189066 | 4_1:-75733980 | Msa0572780:five_prime_UTR |
| CGTAACGGAGTAATTGAATT+TGG | 0.204781 | 4_1:-75732830 | Msa0572780:CDS |
| GTTTATGTTTCCCAGACTTT+GGG | 0.231886 | 4_1:+75730990 | None:intergenic |
| TTTCAAGAAGCTGATTTAAA+AGG | 0.244406 | 4_1:-75729387 | Msa0572780:CDS |
| TTCTTCTCTTCAGATGTCTT+TGG | 0.273008 | 4_1:+75732776 | None:intergenic |
| GAGTTTCAACTTGGCTTATT+CGG | 0.296864 | 4_1:-75730571 | Msa0572780:CDS |
| GATCTTAATATGCAGTTTCC+TGG | 0.316991 | 4_1:-75727949 | Msa0572780:CDS |
| AGTGGATATTACTTTAGATA+TGG | 0.322000 | 4_1:+75729288 | None:intergenic |
| GTTTGTTCAGCAAGAATTGC+TGG | 0.325790 | 4_1:+75730914 | None:intergenic |
| TTGATGTCTATCAATTTAAC+TGG | 0.329460 | 4_1:+75727718 | None:intergenic |
| GAACCAAATCAGATTCTCTT+AGG | 0.338581 | 4_1:+75729584 | None:intergenic |
| CTTGCACCAAACCGCGATTT+CGG | 0.347067 | 4_1:-75730946 | Msa0572780:CDS |
| TGTTTATGTTTCCCAGACTT+TGG | 0.357975 | 4_1:+75730989 | None:intergenic |
| AGCAAGAAACAGAACCTCTT+TGG | 0.371569 | 4_1:-75730544 | Msa0572780:CDS |
| TGTTGAATCCATTGTGGAAA+AGG | 0.373453 | 4_1:-75731988 | Msa0572780:intron |
| AAGGAAACCTACTTTAGATA+TGG | 0.376068 | 4_1:+75731763 | None:intergenic |
| CGCAAGTGCACGTATATATA+CGG | 0.380050 | 4_1:-75731023 | Msa0572780:CDS |
| CATTTCGACTCTATGATATA+CGG | 0.383781 | 4_1:-75730178 | Msa0572780:CDS |
| GTTAATTCATCCCCAAAGTC+TGG | 0.386655 | 4_1:-75731001 | Msa0572780:CDS |
| ACTGCTACACCAGCTCTATA+TGG | 0.391156 | 4_1:-75731064 | Msa0572780:CDS |
| AGGAGATGGGAAGATTGATA+TGG | 0.412059 | 4_1:-75731842 | Msa0572780:CDS |
| CATTTAAACTGTTTGACCTT+GGG | 0.422487 | 4_1:-75732656 | Msa0572780:CDS |
| TATTAGATCGCTCATCGAAT+TGG | 0.424382 | 4_1:-75727749 | Msa0572780:three_prime_UTR |
| ACTCCTAAGAGAATCTGATT+TGG | 0.424899 | 4_1:-75729587 | Msa0572780:CDS |
| ACAATCCTCCATTCTTGCCT+TGG | 0.428593 | 4_1:-75733848 | Msa0572780:CDS |
| GTGTCAGGTCCTATTGTGTT+AGG | 0.433892 | 4_1:-75733956 | Msa0572780:five_prime_UTR |
| AGTAGTTCAATTATTGATGA+TGG | 0.437437 | 4_1:-75733386 | Msa0572780:CDS |
| CTGTTTGACCTTGGGAAGAC+AGG | 0.454872 | 4_1:-75732648 | Msa0572780:CDS |
| TTCATGCCGAAATCGCGGTT+TGG | 0.455851 | 4_1:+75730940 | None:intergenic |
| AGAGTGCTACCTAACACAAT+AGG | 0.460291 | 4_1:+75733947 | None:intergenic |
| GCATTTAAACTGTTTGACCT+TGG | 0.472507 | 4_1:-75732657 | Msa0572780:CDS |
| AGCAGCTCAATGGTCAATGA+TGG | 0.472639 | 4_1:-75730700 | Msa0572780:CDS |
| TCTTTCTCATGATATAATTG+AGG | 0.479063 | 4_1:-75729563 | Msa0572780:CDS |
| TGATGTCTCCAAGGCAAGAA+TGG | 0.479240 | 4_1:+75733840 | None:intergenic |
| AATTGAGGTCATAATTGATA+AGG | 0.482314 | 4_1:-75729548 | Msa0572780:intron |
| ACTTATTGATCAAGAGGAAT+GGG | 0.484570 | 4_1:-75729358 | Msa0572780:CDS |
| AACAGAACCTCTTTGGCGAC+AGG | 0.490563 | 4_1:-75730537 | Msa0572780:CDS |
| AGCAGAATCTACTTGCAAGC+AGG | 0.490658 | 4_1:-75733110 | Msa0572780:CDS |
| GAAGTTGAAGGAGATGGTCT+TGG | 0.495842 | 4_1:-75732051 | Msa0572780:intron |
| TATTTCTGAAAAGTGCGAGT+TGG | 0.503450 | 4_1:+75733139 | None:intergenic |
| ATGGAGGAGGTTGACTCAAA+AGG | 0.503493 | 4_1:-75731862 | Msa0572780:CDS |
| GAAGCTGATTTAAAAGGAGA+TGG | 0.509753 | 4_1:-75729381 | Msa0572780:CDS |
| GAGGTTGACTCAAAAGGAGA+TGG | 0.510798 | 4_1:-75731856 | Msa0572780:CDS |
| GAAGGTAAGAGAGATGATAC+TGG | 0.511413 | 4_1:-75729611 | Msa0572780:intron |
| GACTTATTGATCAAGAGGAA+TGG | 0.513009 | 4_1:-75729359 | Msa0572780:CDS |
| CATGAAATTAAGCAGCTCAA+TGG | 0.514670 | 4_1:-75730710 | Msa0572780:CDS |
| GTGGTTGAGGCGCTGCTGGA+TGG | 0.520629 | 4_1:+75730311 | None:intergenic |
| GTCATGATCTTAAGAAGAGA+AGG | 0.521718 | 4_1:+75731790 | None:intergenic |
| GATATTGAAGATAACACAAT+CGG | 0.522048 | 4_1:-75727910 | Msa0572780:CDS |
| GTCATATTCCTCAGTAAGGA+TGG | 0.530357 | 4_1:+75729315 | None:intergenic |
| TTTATGTTTCCCAGACTTTG+GGG | 0.535451 | 4_1:+75730991 | None:intergenic |
| AATTGTCATATTCCTCAGTA+AGG | 0.537372 | 4_1:+75729311 | None:intergenic |
| ATACTTTGTTATTTCTTCTG+CGG | 0.550295 | 4_1:+75727662 | None:intergenic |
| GTACTTACATGATGTCTCCA+AGG | 0.563471 | 4_1:+75733831 | None:intergenic |
| TTAATTCATCCCCAAAGTCT+GGG | 0.563522 | 4_1:-75731000 | Msa0572780:CDS |
| AGATGGACTTATTGATCAAG+AGG | 0.568328 | 4_1:-75729364 | Msa0572780:CDS |
| CACACTGAAGTTGAAGGAGA+TGG | 0.569454 | 4_1:-75732057 | Msa0572780:intron |
| ATACAGGAAGAGTTTCAACT+TGG | 0.569706 | 4_1:-75730580 | Msa0572780:intron |
| TTTGACAGTTACTGTGAATG+AGG | 0.571808 | 4_1:-75733441 | Msa0572780:intron |
| CGATATTGTTGAATCCATTG+TGG | 0.573614 | 4_1:-75731994 | Msa0572780:CDS |
| GAACATATGCCATATAGAGC+TGG | 0.579476 | 4_1:+75731055 | None:intergenic |
| GGAAGATTGATATGGAAGAG+TGG | 0.580086 | 4_1:-75731834 | Msa0572780:CDS |
| GCAGAATCTACTTGCAAGCA+GGG | 0.583200 | 4_1:-75733109 | Msa0572780:intron |
| AGGCTTTATTGAAAGAGATG+AGG | 0.584329 | 4_1:-75730150 | Msa0572780:intron |
| AGTTACTGTGAATGAGGTTG+AGG | 0.584753 | 4_1:-75733435 | Msa0572780:CDS |
| GAAAGAAAATGTCTCTTCAG+AGG | 0.587284 | 4_1:-75727877 | Msa0572780:three_prime_UTR |
| GCAGCTCAATGGTCAATGAT+GGG | 0.591912 | 4_1:-75730699 | Msa0572780:CDS |
| TGCTGACCCTGTCGCCAAAG+AGG | 0.592635 | 4_1:+75730530 | None:intergenic |
| ACAGAACCTCTTTGGCGACA+GGG | 0.596897 | 4_1:-75730536 | Msa0572780:intron |
| AGGTTGACTCAAAAGGAGAT+GGG | 0.599352 | 4_1:-75731855 | Msa0572780:CDS |
| ATGTTTGATATTAAGCGTAA+CGG | 0.599376 | 4_1:-75732845 | Msa0572780:CDS |
| GAGCATCAAACCAACTTGTG+TGG | 0.601428 | 4_1:-75731089 | Msa0572780:CDS |
| TGATGATGGCTGCATTCACA+AGG | 0.608057 | 4_1:-75733372 | Msa0572780:intron |
| CAATGTATCCTGTCTTCCCA+AGG | 0.609387 | 4_1:+75732640 | None:intergenic |
| CTCTATGATATACGGCAAAG+AGG | 0.611147 | 4_1:-75730170 | Msa0572780:CDS |
| GGATCTTCATGCCGAAATCG+CGG | 0.620749 | 4_1:+75730935 | None:intergenic |
| CTCAAAATCCATCCTTACTG+AGG | 0.620870 | 4_1:-75729323 | Msa0572780:CDS |
| TGTCTCCAAGGCAAGAATGG+AGG | 0.659508 | 4_1:+75733843 | None:intergenic |
| TCTGATACCAGTTCAAAACC+AGG | 0.662807 | 4_1:+75727931 | None:intergenic |
| GTAGCAGTATCCACACAAGT+TGG | 0.688111 | 4_1:+75731079 | None:intergenic |
| AGGATACATTGAGCATAGTG+AGG | 0.693274 | 4_1:-75732628 | Msa0572780:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATGAAATTTTATAG+TGG | - | chr4_1:75728778-75728797 | Msa0572780:intron | 10.0% |
| !! | AAAATGAAAGATAAATAAAA+AGG | + | chr4_1:75732222-75732241 | None:intergenic | 10.0% |
| !!! | ATTTTAATGTCACTTTTTAT+AGG | + | chr4_1:75729509-75729528 | None:intergenic | 15.0% |
| !!! | TTCATAGTTACTATTATTTT+TGG | - | chr4_1:75730005-75730024 | Msa0572780:intron | 15.0% |
| !!! | CTTAGAATGATTTTATTTAT+TGG | - | chr4_1:75730498-75730517 | Msa0572780:intron | 15.0% |
| !! | ATTTATTGGAACATAAAATT+TGG | - | chr4_1:75730512-75730531 | Msa0572780:intron | 15.0% |
| !! | ATAAAGAAATTAGTAATATC+TGG | + | chr4_1:75731693-75731712 | None:intergenic | 15.0% |
| !! | TTAAAGTTATTTAATAAAGC+CGG | + | chr4_1:75732014-75732033 | None:intergenic | 15.0% |
| !! | ATATAATTAATTCTTAGAGA+GGG | + | chr4_1:75732251-75732270 | None:intergenic | 15.0% |
| !! | TATATAATTAATTCTTAGAG+AGG | + | chr4_1:75732252-75732271 | None:intergenic | 15.0% |
| !! | ATATTCTTAAGAAATTTCAT+AGG | + | chr4_1:75733318-75733337 | None:intergenic | 15.0% |
| !!! | ATCATAATAAAATTTTGAGT+TGG | - | chr4_1:75733526-75733545 | Msa0572780:intron | 15.0% |
| !!! | TATTGATGATATATATTATG+TGG | + | chr4_1:75733676-75733695 | None:intergenic | 15.0% |
| !! | CATAATATATATCATCAATA+CGG | - | chr4_1:75733676-75733695 | Msa0572780:intron | 15.0% |
| !!! | CTTGAATGATTATTTGATTT+TGG | - | chr4_1:75727761-75727780 | Msa0572780:three_prime_UTR | 20.0% |
| !!! | TTCACAAGGTATATTTATTT+TGG | - | chr4_1:75728383-75728402 | Msa0572780:intron | 20.0% |
| !! | TTCATATAGAGAGAAATATT+TGG | + | chr4_1:75728445-75728464 | None:intergenic | 20.0% |
| !! | AACTGTAAGAACAAAAAAAA+TGG | + | chr4_1:75729064-75729083 | None:intergenic | 20.0% |
| !! | TTTGTATTAATTTACCCTTT+AGG | - | chr4_1:75729238-75729257 | Msa0572780:intron | 20.0% |
| !!! | TCAAAATGGTCTTATATTTA+AGG | - | chr4_1:75729530-75729549 | Msa0572780:intron | 20.0% |
| !! | AAGAGATAAGAATTAAATTG+AGG | + | chr4_1:75729830-75729849 | None:intergenic | 20.0% |
| !! | AATAGTAACTATGAAATTGA+AGG | + | chr4_1:75730000-75730019 | None:intergenic | 20.0% |
| !! | TTAACAGTAAAAGATTAGAA+TGG | + | chr4_1:75730046-75730065 | None:intergenic | 20.0% |
| !!! | AATTTCAACTTTTCTTAACT+GGG | + | chr4_1:75730377-75730396 | None:intergenic | 20.0% |
| !! | ACCATAATTAAAATTGTACA+AGG | - | chr4_1:75731103-75731122 | Msa0572780:intron | 20.0% |
| !!! | TCCTTGTACAATTTTAATTA+TGG | + | chr4_1:75731107-75731126 | None:intergenic | 20.0% |
| !! | AATTAATCTTCAACATATAC+AGG | - | chr4_1:75731145-75731164 | Msa0572780:intron | 20.0% |
| !! | ATATTTGACTCAAAAAATGA+TGG | - | chr4_1:75731365-75731384 | Msa0572780:intron | 20.0% |
| !!! | TTTGATTTTAACTTTCTTGA+TGG | - | chr4_1:75732076-75732095 | Msa0572780:intron | 20.0% |
| !! | TATAATTAATTCTTAGAGAG+GGG | + | chr4_1:75732250-75732269 | None:intergenic | 20.0% |
| !!! | GTTTTTTGTGTCATATTTTT+TGG | + | chr4_1:75732610-75732629 | None:intergenic | 20.0% |
| !!! | AATCTTTTTACAATTCTCAA+CGG | - | chr4_1:75732925-75732944 | Msa0572780:intron | 20.0% |
| !! | AATTCTCATCATTATATTCT+TGG | - | chr4_1:75733382-75733401 | Msa0572780:CDS | 20.0% |
| !!! | ATAATTTTGTTTCAACATCA+AGG | - | chr4_1:75733607-75733626 | Msa0572780:intron | 20.0% |
| !!! | TTTTGTTTGAATATTAGAAG+TGG | - | chr4_1:75733699-75733718 | Msa0572780:intron | 20.0% |
| ! | AGTAGTTCAATTATTGATGA+TGG | - | chr4_1:75728355-75728374 | Msa0572780:intron | 25.0% |
| ! | CCATAATTACAATTGTATGA+GGG | + | chr4_1:75728712-75728731 | None:intergenic | 25.0% |
| ! | TCCATAATTACAATTGTATG+AGG | + | chr4_1:75728713-75728732 | None:intergenic | 25.0% |
| !!! | TAACAAAAATCTCTGAAACA+TGG | - | chr4_1:75728742-75728761 | Msa0572780:intron | 25.0% |
| ! | ATGTTTGATATTAAGCGTAA+CGG | - | chr4_1:75728896-75728915 | Msa0572780:intron | 25.0% |
| ! | AAAGTGAAAATGATGAACAA+TGG | + | chr4_1:75729158-75729177 | None:intergenic | 25.0% |
| !! | TTGTTCATCATTTTCACTTT+AGG | - | chr4_1:75729158-75729177 | Msa0572780:intron | 25.0% |
| ! | GATAAAGATCGACATAATTA+TGG | - | chr4_1:75729435-75729454 | Msa0572780:intron | 25.0% |
| ! | GTGACATTAAAATCTCAAAA+TGG | - | chr4_1:75729516-75729535 | Msa0572780:intron | 25.0% |
| !!! | TGAACCTTTTTTGTACATAA+TGG | - | chr4_1:75729661-75729680 | Msa0572780:intron | 25.0% |
| ! | GATAAATGTATGGTTTCATA+TGG | + | chr4_1:75729786-75729805 | None:intergenic | 25.0% |
| ! | TTCTTATCTCTTATACTTCT+TGG | - | chr4_1:75729838-75729857 | Msa0572780:intron | 25.0% |
| ! | TAAGTGAATCCATTAATGTT+AGG | + | chr4_1:75730326-75730345 | None:intergenic | 25.0% |
| !! | GAATTTCAACTTTTCTTAAC+TGG | + | chr4_1:75730378-75730397 | None:intergenic | 25.0% |
| ! | TAGTTTCTTTGATCATTCAT+TGG | + | chr4_1:75730400-75730419 | None:intergenic | 25.0% |
| !! | ACATAAAATTTGGAACAAAG+TGG | - | chr4_1:75730522-75730541 | Msa0572780:intron | 25.0% |
| !! | ACATAAACAAGTCTTTTTGA+TGG | - | chr4_1:75730766-75730785 | Msa0572780:intron | 25.0% |
| !! | CATAAACAAGTCTTTTTGAT+GGG | - | chr4_1:75730767-75730786 | Msa0572780:intron | 25.0% |
| !! | ATAAACAAGTCTTTTTGATG+GGG | - | chr4_1:75730768-75730787 | Msa0572780:intron | 25.0% |
| ! | ATATCCTAGAGTTTGTATTA+TGG | - | chr4_1:75730880-75730899 | Msa0572780:intron | 25.0% |
| ! | AATACCATAATACAAACTCT+AGG | + | chr4_1:75730887-75730906 | None:intergenic | 25.0% |
| ! | TCAATTTCAGAAACATTAAC+TGG | + | chr4_1:75730993-75731012 | None:intergenic | 25.0% |
| !! | AATGATGGTATGATAGATTT+TGG | - | chr4_1:75731380-75731399 | Msa0572780:intron | 25.0% |
| !!! | ATGATATTTTTTGTCCGAAA+TGG | + | chr4_1:75731798-75731817 | None:intergenic | 25.0% |
| ! | CAAGTTGTAAAGATATTTAG+TGG | + | chr4_1:75731954-75731973 | None:intergenic | 25.0% |
| ! | CACTAAATATCTTTACAACT+TGG | - | chr4_1:75731952-75731971 | Msa0572780:intron | 25.0% |
| ! | TCTTTCTCATGATATAATTG+AGG | - | chr4_1:75732178-75732197 | Msa0572780:intron | 25.0% |
| ! | AATTGAGGTCATAATTGATA+AGG | - | chr4_1:75732193-75732212 | Msa0572780:intron | 25.0% |
| !! | TTTCAAGAAGCTGATTTAAA+AGG | - | chr4_1:75732354-75732373 | Msa0572780:intron | 25.0% |
| ! | AGTGGATATTACTTTAGATA+TGG | + | chr4_1:75732456-75732475 | None:intergenic | 25.0% |
| !!! | TTTGTGTCATATTTTTTGGT+AGG | + | chr4_1:75732606-75732625 | None:intergenic | 25.0% |
| ! | TACATCTTAGATAAGTTGTT+TGG | + | chr4_1:75732710-75732729 | None:intergenic | 25.0% |
| ! | TTGCATAATGAAGTTATGAT+GGG | + | chr4_1:75733035-75733054 | None:intergenic | 25.0% |
| ! | ATTGCATAATGAAGTTATGA+TGG | + | chr4_1:75733036-75733055 | None:intergenic | 25.0% |
| ! | TTCATTATGCAATGTTCATA+TGG | - | chr4_1:75733043-75733062 | Msa0572780:intron | 25.0% |
| !!! | CACTTTTTTTAACTATACCT+AGG | - | chr4_1:75733355-75733374 | Msa0572780:intron | 25.0% |
| !! | AATGATGAGAATTTTATCCT+AGG | + | chr4_1:75733375-75733394 | None:intergenic | 25.0% |
| ! | GATATTGAAGATAACACAAT+CGG | - | chr4_1:75733831-75733850 | Msa0572780:intron | 25.0% |
| ! | TTGATGTCTATCAATTTAAC+TGG | + | chr4_1:75734026-75734045 | None:intergenic | 25.0% |
| !! | TTTTGAAGAATTCAGTAGTG+AGG | - | chr4_1:75727699-75727718 | Msa0572780:three_prime_UTR | 30.0% |
| !! | TTATTTGATTTTGGTGTGTC+AGG | - | chr4_1:75727770-75727789 | Msa0572780:three_prime_UTR | 30.0% |
| !! | GATTGTTCTTGCTTAGTTTT+TGG | + | chr4_1:75727879-75727898 | None:intergenic | 30.0% |
| ! | CACATCTTCAATCTAAAGTA+TGG | - | chr4_1:75728085-75728104 | Msa0572780:intron | 30.0% |
| !!! | TTTTGACTTTTAGTCACTCA+TGG | + | chr4_1:75728156-75728175 | None:intergenic | 30.0% |
| TAATCATATATGAGCCTGTT+TGG | + | chr4_1:75728211-75728230 | None:intergenic | 30.0% | |
| TATACATGTCAGATTTCTTG+TGG | - | chr4_1:75728246-75728265 | Msa0572780:intron | 30.0% | |
| !!! | TTGTGGTTTTAACTCTGATT+TGG | - | chr4_1:75728263-75728282 | Msa0572780:intron | 30.0% |
| CCCTCATACAATTGTAATTA+TGG | - | chr4_1:75728709-75728728 | Msa0572780:intron | 30.0% | |
| TGAAACATGGATGAAATTCA+TGG | - | chr4_1:75728755-75728774 | Msa0572780:intron | 30.0% | |
| CATTTAAACTGTTTGACCTT+GGG | - | chr4_1:75729085-75729104 | Msa0572780:intron | 30.0% | |
| ATGAACAATGGAAAGGTTAA+AGG | + | chr4_1:75729146-75729165 | None:intergenic | 30.0% | |
| GAAAATGATGAACAATGGAA+AGG | + | chr4_1:75729153-75729172 | None:intergenic | 30.0% | |
| ACTACTAAAGTTACATGAGA+AGG | + | chr4_1:75729589-75729608 | None:intergenic | 30.0% | |
| ! | TGTGCCATTATGTACAAAAA+AGG | + | chr4_1:75729668-75729687 | None:intergenic | 30.0% |
| ATTGAAGGAGGATAAATGTA+TGG | + | chr4_1:75729796-75729815 | None:intergenic | 30.0% | |
| GAAACTATAGAAATTGAAGG+AGG | + | chr4_1:75729808-75729827 | None:intergenic | 30.0% | |
| GAGGAAACTATAGAAATTGA+AGG | + | chr4_1:75729811-75729830 | None:intergenic | 30.0% | |
| TCCATTGTCTAAAAAAGATC+AGG | + | chr4_1:75729864-75729883 | None:intergenic | 30.0% | |
| !!! | TGATCTTTTTTAGACAATGG+AGG | - | chr4_1:75729863-75729882 | Msa0572780:intron | 30.0% |
| AAGGAAACCTACTTTAGATA+TGG | + | chr4_1:75729981-75730000 | None:intergenic | 30.0% | |
| TGAATCCATTAATGTTAGGT+AGG | + | chr4_1:75730322-75730341 | None:intergenic | 30.0% | |
| GCAAATAAATCTATGCTTGT+TGG | + | chr4_1:75730473-75730492 | None:intergenic | 30.0% | |
| !! | TACAAACTCTAGGATATGAT+TGG | + | chr4_1:75730877-75730896 | None:intergenic | 30.0% |
| ATACTTCACAGCTACATTAT+TGG | + | chr4_1:75730921-75730940 | None:intergenic | 30.0% | |
| AAGTAAGCTCTATAAAGTTG+AGG | - | chr4_1:75731075-75731094 | Msa0572780:CDS | 30.0% | |
| CATTTCGACTCTATGATATA+CGG | - | chr4_1:75731563-75731582 | Msa0572780:intron | 30.0% | |
| TATGTCTGAATTCACCATTT+CGG | - | chr4_1:75731781-75731800 | Msa0572780:CDS | 30.0% | |
| ACTTATTGATCAAGAGGAAT+GGG | - | chr4_1:75732383-75732402 | Msa0572780:intron | 30.0% | |
| AATTGTCATATTCCTCAGTA+AGG | + | chr4_1:75732433-75732452 | None:intergenic | 30.0% | |
| GAAATGCATGAAATGAAAAG+TGG | + | chr4_1:75732474-75732493 | None:intergenic | 30.0% | |
| GTAATCGTTAGTATTTGAAG+TGG | - | chr4_1:75732526-75732545 | Msa0572780:intron | 30.0% | |
| TGTACTTTCGATTCTAACTT+TGG | + | chr4_1:75732753-75732772 | None:intergenic | 30.0% | |
| AAGATTTCTCATACTGATCT+AGG | + | chr4_1:75732793-75732812 | None:intergenic | 30.0% | |
| TTTGAGTGTCACGAAAATAA+TGG | + | chr4_1:75732850-75732869 | None:intergenic | 30.0% | |
| TACTCTCATTGTCGTATTAT+TGG | + | chr4_1:75732956-75732975 | None:intergenic | 30.0% | |
| AATGAGAGTAAATTGAACGA+AGG | - | chr4_1:75732966-75732985 | Msa0572780:intron | 30.0% | |
| GAAACAAAGGGTAAAGTTTA+AGG | + | chr4_1:75733101-75733120 | None:intergenic | 30.0% | |
| GATTTAGACACAGAAACAAA+GGG | + | chr4_1:75733113-75733132 | None:intergenic | 30.0% | |
| TGATTTAGACACAGAAACAA+AGG | + | chr4_1:75733114-75733133 | None:intergenic | 30.0% | |
| TTCTGTGTCTAAATCAATTG+AGG | - | chr4_1:75733118-75733137 | Msa0572780:CDS | 30.0% | |
| !! | ATATCTTGCATTTGCTATTG+TGG | + | chr4_1:75733208-75733227 | None:intergenic | 30.0% |
| AATAGCAAATGCAAGATATC+AGG | - | chr4_1:75733209-75733228 | Msa0572780:intron | 30.0% | |
| ! | CAGTATTGAGTTCATAATCT+AGG | + | chr4_1:75733479-75733498 | None:intergenic | 30.0% |
| ! | TGGTTTCGTAAGATTGATTT+AGG | + | chr4_1:75733553-75733572 | None:intergenic | 30.0% |
| AAATCAATCTTACGAAACCA+CGG | - | chr4_1:75733553-75733572 | Msa0572780:intron | 30.0% | |
| TGATATTGTTGAAACTCTAG+AGG | - | chr4_1:75733584-75733603 | Msa0572780:intron | 30.0% | |
| CAGTGAGATTGTCATAATAA+CGG | + | chr4_1:75733640-75733659 | None:intergenic | 30.0% | |
| ATTAAGCTTCGTCATATTTG+TGG | - | chr4_1:75733736-75733755 | Msa0572780:intron | 30.0% | |
| TTATAAGTAACACTTGCCTT+TGG | - | chr4_1:75733759-75733778 | Msa0572780:intron | 30.0% | |
| ! | AAGAGACATTTTCTTTCTCA+TGG | + | chr4_1:75733861-75733880 | None:intergenic | 30.0% |
| !!! | AGCTGTTTTTGCTTGATGAA+AGG | - | chr4_1:75727849-75727868 | Msa0572780:three_prime_UTR | 35.0% |
| CTTTAGATTGAAGATGTGTC+TGG | + | chr4_1:75728083-75728102 | None:intergenic | 35.0% | |
| CTCAATTGAATCTCTCTTCA+CGG | - | chr4_1:75728128-75728147 | Msa0572780:intron | 35.0% | |
| AACATTTGCTCAAACCAAAC+AGG | - | chr4_1:75728194-75728213 | Msa0572780:intron | 35.0% | |
| CATGTATAGAACTATAGCAG+CGG | + | chr4_1:75728234-75728253 | None:intergenic | 35.0% | |
| CAGTAACTGTCAAATGGTAA+AGG | + | chr4_1:75728294-75728313 | None:intergenic | 35.0% | |
| CATTCACAGTAACTGTCAAA+TGG | + | chr4_1:75728300-75728319 | None:intergenic | 35.0% | |
| TTTGACAGTTACTGTGAATG+AGG | - | chr4_1:75728300-75728319 | Msa0572780:intron | 35.0% | |
| ACTCAAGTATGATGACAGTT+AGG | + | chr4_1:75728513-75728532 | None:intergenic | 35.0% | |
| CGTCAAGACAATTTATTTGC+AGG | - | chr4_1:75728572-75728591 | Msa0572780:intron | 35.0% | |
| CAAGACAATTTATTTGCAGG+AGG | - | chr4_1:75728575-75728594 | Msa0572780:intron | 35.0% | |
| ! | TATTTCTGAAAAGTGCGAGT+TGG | + | chr4_1:75728605-75728624 | None:intergenic | 35.0% |
| AAGCTAAGAAAACTGAATGC+AGG | - | chr4_1:75728865-75728884 | Msa0572780:intron | 35.0% | |
| ! | CGTAACGGAGTAATTGAATT+TGG | - | chr4_1:75728911-75728930 | Msa0572780:intron | 35.0% |
| TTCTTCTCTTCAGATGTCTT+TGG | + | chr4_1:75728968-75728987 | None:intergenic | 35.0% | |
| GCATTTAAACTGTTTGACCT+TGG | - | chr4_1:75729084-75729103 | Msa0572780:intron | 35.0% | |
| ! | AAATTGATTCTGTGCAGGTT+TGG | + | chr4_1:75729382-75729401 | None:intergenic | 35.0% |
| ! | GACATAAATTGATTCTGTGC+AGG | + | chr4_1:75729387-75729406 | None:intergenic | 35.0% |
| ! | GGTCTTATATTTAAGGACAG+AGG | - | chr4_1:75729537-75729556 | Msa0572780:intron | 35.0% |
| CGATATTGTTGAATCCATTG+TGG | - | chr4_1:75729747-75729766 | Msa0572780:intron | 35.0% | |
| TGTTGAATCCATTGTGGAAA+AGG | - | chr4_1:75729753-75729772 | Msa0572780:intron | 35.0% | |
| ! | GTTAAGAACCTTTTCCACAA+TGG | + | chr4_1:75729764-75729783 | None:intergenic | 35.0% |
| !!! | GCCTGATCTTTTTTAGACAA+TGG | - | chr4_1:75729860-75729879 | Msa0572780:intron | 35.0% |
| !!! | TCTTTTTTAGACAATGGAGG+AGG | - | chr4_1:75729866-75729885 | Msa0572780:intron | 35.0% |
| GTCATGATCTTAAGAAGAGA+AGG | + | chr4_1:75729954-75729973 | None:intergenic | 35.0% | |
| TTGAAGATCAATGCACTAGA+AGG | - | chr4_1:75730177-75730196 | Msa0572780:CDS | 35.0% | |
| TTCAATATGTACGCTTGCTT+AGG | - | chr4_1:75730271-75730290 | Msa0572780:intron | 35.0% | |
| CATTAATGTTAGGTAGGCAA+AGG | + | chr4_1:75730316-75730335 | None:intergenic | 35.0% | |
| CTTTGCCTACCTAACATTAA+TGG | - | chr4_1:75730314-75730333 | Msa0572780:CDS | 35.0% | |
| !!! | ATCAACTTTTTTCCAAGCCT+AGG | + | chr4_1:75730583-75730602 | None:intergenic | 35.0% |
| TTAATTCATCCCCAAAGTCT+GGG | - | chr4_1:75730741-75730760 | Msa0572780:CDS | 35.0% | |
| TTTATGTTTCCCAGACTTTG+GGG | + | chr4_1:75730753-75730772 | None:intergenic | 35.0% | |
| GTTTATGTTTCCCAGACTTT+GGG | + | chr4_1:75730754-75730773 | None:intergenic | 35.0% | |
| TGTTTATGTTTCCCAGACTT+TGG | + | chr4_1:75730755-75730774 | None:intergenic | 35.0% | |
| CATGAAATTAAGCAGCTCAA+TGG | - | chr4_1:75731031-75731050 | Msa0572780:CDS | 35.0% | |
| ATACAGGAAGAGTTTCAACT+TGG | - | chr4_1:75731161-75731180 | Msa0572780:intron | 35.0% | |
| GAGTTTCAACTTGGCTTATT+CGG | - | chr4_1:75731170-75731189 | Msa0572780:intron | 35.0% | |
| ACGAAAGAGCTAGATTATCA+AGG | + | chr4_1:75731535-75731554 | None:intergenic | 35.0% | |
| !! | AGGCTTTATTGAAAGAGATG+AGG | - | chr4_1:75731591-75731610 | Msa0572780:intron | 35.0% |
| AGAGATGAGGTATAACAATG+AGG | - | chr4_1:75731604-75731623 | Msa0572780:intron | 35.0% | |
| !!! | CGGTTTTTTAGAAAGAGCAA+GGG | + | chr4_1:75731759-75731778 | None:intergenic | 35.0% |
| ! | CCTTGCTCTTTCTAAAAAAC+CGG | - | chr4_1:75731757-75731776 | Msa0572780:intron | 35.0% |
| ATGGTGAATTCAGACATATC+CGG | + | chr4_1:75731779-75731798 | None:intergenic | 35.0% | |
| !! | AAATATCATTTTTCCGCCTC+TGG | - | chr4_1:75731809-75731828 | Msa0572780:CDS | 35.0% |
| ATTGATCCGGTTGTTTAGAA+AGG | - | chr4_1:75731882-75731901 | Msa0572780:intron | 35.0% | |
| TTGATCCGGTTGTTTAGAAA+GGG | - | chr4_1:75731883-75731902 | Msa0572780:intron | 35.0% | |
| TCTTTACAACTTGGACTCTT+TGG | - | chr4_1:75731961-75731980 | Msa0572780:intron | 35.0% | |
| AAAGGACTTAGTTTCATGGT+CGG | + | chr4_1:75731988-75732007 | None:intergenic | 35.0% | |
| ATTTAATAAAGCCGGTCCAA+AGG | + | chr4_1:75732006-75732025 | None:intergenic | 35.0% | |
| TGTCTAAGTTACTTGTGTGA+TGG | - | chr4_1:75732108-75732127 | Msa0572780:intron | 35.0% | |
| ! | TAAGTTACTTGTGTGATGGA+AGG | - | chr4_1:75732112-75732131 | Msa0572780:intron | 35.0% |
| ACTCCTAAGAGAATCTGATT+TGG | - | chr4_1:75732154-75732173 | Msa0572780:intron | 35.0% | |
| GAACCAAATCAGATTCTCTT+AGG | + | chr4_1:75732160-75732179 | None:intergenic | 35.0% | |
| !! | AAATTGCAGAATCTAGCTCT+TGG | - | chr4_1:75732284-75732303 | Msa0572780:intron | 35.0% |
| !! | AATTGCAGAATCTAGCTCTT+GGG | - | chr4_1:75732285-75732304 | Msa0572780:intron | 35.0% |
| ! | GAAGCTGATTTAAAAGGAGA+TGG | - | chr4_1:75732360-75732379 | Msa0572780:intron | 35.0% |
| ! | AGATGGACTTATTGATCAAG+AGG | - | chr4_1:75732377-75732396 | Msa0572780:intron | 35.0% |
| GACTTATTGATCAAGAGGAA+TGG | - | chr4_1:75732382-75732401 | Msa0572780:intron | 35.0% | |
| CATTTCATGCATTTCCTTCT+AGG | - | chr4_1:75732479-75732498 | Msa0572780:intron | 35.0% | |
| GTTAAGGGCAACTCTTAAAT+TGG | + | chr4_1:75732635-75732654 | None:intergenic | 35.0% | |
| ATTTAAGAGTTGCCCTTAAC+AGG | - | chr4_1:75732635-75732654 | Msa0572780:CDS | 35.0% | |
| TGTACGTGATACTTGTAGAT+TGG | - | chr4_1:75732726-75732745 | Msa0572780:intron | 35.0% | |
| GCACTCAAAATGAAGTTCTT+AGG | + | chr4_1:75732828-75732847 | None:intergenic | 35.0% | |
| CGTGACACTCAAATTAACAT+CGG | - | chr4_1:75732857-75732876 | Msa0572780:CDS | 35.0% | |
| !! | AGTTTAAGGCTATTTTGCGA+GGG | + | chr4_1:75733087-75733106 | None:intergenic | 35.0% |
| !! | AAGTTTAAGGCTATTTTGCG+AGG | + | chr4_1:75733088-75733107 | None:intergenic | 35.0% |
| !! | AGAACCTATGAGAAGTGTTT+GGG | + | chr4_1:75733258-75733277 | None:intergenic | 35.0% |
| !! | AAGAACCTATGAGAAGTGTT+TGG | + | chr4_1:75733259-75733278 | None:intergenic | 35.0% |
| AATGTAAGATGATGCGAAAG+TGG | - | chr4_1:75733289-75733308 | Msa0572780:intron | 35.0% | |
| ATGAACTCAATACTGACATG+TGG | - | chr4_1:75733484-75733503 | Msa0572780:intron | 35.0% | |
| ACAATATCATTGTATCACCG+TGG | + | chr4_1:75733573-75733592 | None:intergenic | 35.0% | |
| GATCTTAATATGCAGTTTCC+TGG | - | chr4_1:75733792-75733811 | Msa0572780:intron | 35.0% | |
| GAAAGAAAATGTCTCTTCAG+AGG | - | chr4_1:75733864-75733883 | Msa0572780:CDS | 35.0% | |
| TATTAGATCGCTCATCGAAT+TGG | - | chr4_1:75733992-75734011 | Msa0572780:five_prime_UTR | 35.0% | |
| ! | AGAGTGCTACCTAACACAAT+AGG | + | chr4_1:75727797-75727816 | None:intergenic | 40.0% |
| GTACTTACATGATGTCTCCA+AGG | + | chr4_1:75727913-75727932 | None:intergenic | 40.0% | |
| AGTTACTGTGAATGAGGTTG+AGG | - | chr4_1:75728306-75728325 | Msa0572780:intron | 40.0% | |
| AGGATACATTGAGCATAGTG+AGG | - | chr4_1:75729113-75729132 | Msa0572780:intron | 40.0% | |
| ! | GCAGCTTTGACAAAATCACA+TGG | - | chr4_1:75729191-75729210 | Msa0572780:intron | 40.0% |
| AAATCAACGTGAGTTTGGCA+AGG | + | chr4_1:75729294-75729313 | None:intergenic | 40.0% | |
| !!! | TGCCAAACTCACGTTGATTT+TGG | - | chr4_1:75729294-75729313 | Msa0572780:intron | 40.0% |
| CACCAAAATCAACGTGAGTT+TGG | + | chr4_1:75729299-75729318 | None:intergenic | 40.0% | |
| !!! | TTCTGTGCAGGTTTGGTTTT+GGG | + | chr4_1:75729375-75729394 | None:intergenic | 40.0% |
| !! | ATTCTGTGCAGGTTTGGTTT+TGG | + | chr4_1:75729376-75729395 | None:intergenic | 40.0% |
| TAATGGCACACTGAAGTTGA+AGG | - | chr4_1:75729678-75729697 | Msa0572780:intron | 40.0% | |
| ! | AGGTTGACTCAAAAGGAGAT+GGG | - | chr4_1:75729886-75729905 | Msa0572780:intron | 40.0% |
| AGGAGATGGGAAGATTGATA+TGG | - | chr4_1:75729899-75729918 | Msa0572780:intron | 40.0% | |
| GGAAGATTGATATGGAAGAG+TGG | - | chr4_1:75729907-75729926 | Msa0572780:intron | 40.0% | |
| ! | GACTCTGCCATATCTAAAGT+AGG | - | chr4_1:75729971-75729990 | Msa0572780:intron | 40.0% |
| AAATGAATGTTGTGCCTGTC+AGG | - | chr4_1:75730090-75730109 | Msa0572780:intron | 40.0% | |
| AATGAATGTTGTGCCTGTCA+GGG | - | chr4_1:75730091-75730110 | Msa0572780:intron | 40.0% | |
| TTGTTGCTAATCTTCCACCT+CGG | + | chr4_1:75730153-75730172 | None:intergenic | 40.0% | |
| AGCAAGCGTACATATTGAAG+CGG | + | chr4_1:75730270-75730289 | None:intergenic | 40.0% | |
| GTTTCAACATCAACAGTCCT+AGG | - | chr4_1:75730563-75730582 | Msa0572780:CDS | 40.0% | |
| AGTTGATCACTTCATGTGCA+TGG | - | chr4_1:75730596-75730615 | Msa0572780:intron | 40.0% | |
| GAACATATTCCAGCTCAAAG+TGG | - | chr4_1:75730618-75730637 | Msa0572780:intron | 40.0% | |
| GAACATATGCCATATAGAGC+TGG | + | chr4_1:75730689-75730708 | None:intergenic | 40.0% | |
| CGCAAGTGCACGTATATATA+CGG | - | chr4_1:75730718-75730737 | Msa0572780:CDS | 40.0% | |
| GTTAATTCATCCCCAAAGTC+TGG | - | chr4_1:75730740-75730759 | Msa0572780:CDS | 40.0% | |
| GTTTGTTCAGCAAGAATTGC+TGG | + | chr4_1:75730830-75730849 | None:intergenic | 40.0% | |
| AGCAAGAAACAGAACCTCTT+TGG | - | chr4_1:75731197-75731216 | Msa0572780:intron | 40.0% | |
| CTTTGACTAGACTTGTAAGC+AGG | - | chr4_1:75731334-75731353 | Msa0572780:intron | 40.0% | |
| ! | CTCTTACAAGCTGTCTTTTG+TGG | + | chr4_1:75731452-75731471 | None:intergenic | 40.0% |
| CTCTATGATATACGGCAAAG+AGG | - | chr4_1:75731571-75731590 | Msa0572780:intron | 40.0% | |
| !!! | CCGGTTTTTTAGAAAGAGCA+AGG | + | chr4_1:75731760-75731779 | None:intergenic | 40.0% |
| ATCAAAATGCACCAATCCAG+AGG | + | chr4_1:75731828-75731847 | None:intergenic | 40.0% | |
| ATCAATGCGGATTCACTAAC+GGG | + | chr4_1:75731868-75731887 | None:intergenic | 40.0% | |
| GATCAATGCGGATTCACTAA+CGG | + | chr4_1:75731869-75731888 | None:intergenic | 40.0% | |
| ! | TTAGTGAATCCGCATTGATC+CGG | - | chr4_1:75731869-75731888 | Msa0572780:intron | 40.0% |
| TCTAAACAACCGGATCAATG+CGG | + | chr4_1:75731881-75731900 | None:intergenic | 40.0% | |
| TAGAGTCTTTGACACTAGTG+AGG | - | chr4_1:75731928-75731947 | Msa0572780:intron | 40.0% | |
| GACCATGAAACTAAGTCCTT+TGG | - | chr4_1:75731987-75732006 | Msa0572780:intron | 40.0% | |
| GTCCAAAGGACTTAGTTTCA+TGG | + | chr4_1:75731992-75732011 | None:intergenic | 40.0% | |
| TGAAACTAAGTCCTTTGGAC+CGG | - | chr4_1:75731992-75732011 | Msa0572780:CDS | 40.0% | |
| GAAGGTAAGAGAGATGATAC+TGG | - | chr4_1:75732130-75732149 | Msa0572780:intron | 40.0% | |
| !!! | ATCTAGCTCTTGGGATTTTC+TGG | - | chr4_1:75732294-75732313 | Msa0572780:intron | 40.0% |
| GTCTACTAACCCCTCTATAA+TGG | - | chr4_1:75732323-75732342 | Msa0572780:intron | 40.0% | |
| ! | AATGCCTGTGCCATTATAGA+GGG | + | chr4_1:75732336-75732355 | None:intergenic | 40.0% |
| ! | AAATGCCTGTGCCATTATAG+AGG | + | chr4_1:75732337-75732356 | None:intergenic | 40.0% |
| CTCAAAATCCATCCTTACTG+AGG | - | chr4_1:75732418-75732437 | Msa0572780:intron | 40.0% | |
| GTCATATTCCTCAGTAAGGA+TGG | + | chr4_1:75732429-75732448 | None:intergenic | 40.0% | |
| ! | TTTCCTTCTAGGAGTCTTTG+TGG | - | chr4_1:75732490-75732509 | Msa0572780:intron | 40.0% |
| TATCCACAAAGACTCCTAGA+AGG | + | chr4_1:75732496-75732515 | None:intergenic | 40.0% | |
| ! | TTCTAGGAGTCTTTGTGGAT+AGG | - | chr4_1:75732495-75732514 | Msa0572780:intron | 40.0% |
| TGATGAGGATAATGTAACCG+TGG | + | chr4_1:75732684-75732703 | None:intergenic | 40.0% | |
| !! | TAAGTTGTTTGGCACTGATG+AGG | + | chr4_1:75732699-75732718 | None:intergenic | 40.0% |
| GTTAAAACCTACCAACGACA+AGG | + | chr4_1:75732891-75732910 | None:intergenic | 40.0% | |
| ! | GAAGTTATGATGGGATGAGA+GGG | + | chr4_1:75733026-75733045 | None:intergenic | 40.0% |
| ! | TGAAGTTATGATGGGATGAG+AGG | + | chr4_1:75733027-75733046 | None:intergenic | 40.0% |
| ! | TATGCATGTTTCTGCTAGAC+TGG | - | chr4_1:75733179-75733198 | Msa0572780:intron | 40.0% |
| ATGCAAGATATCAGGATGCA+TGG | - | chr4_1:75733217-75733236 | Msa0572780:intron | 40.0% | |
| !! | TATGAGAAGTGTTTGGGTTG+TGG | + | chr4_1:75733252-75733271 | None:intergenic | 40.0% |
| ACAACCCAAACACTTCTCAT+AGG | - | chr4_1:75733251-75733270 | Msa0572780:intron | 40.0% | |
| !! | CTCTGAAGTTTAGAAGGTGT+TGG | + | chr4_1:75733445-75733464 | None:intergenic | 40.0% |
| !! | GCTAGACTCTGAAGTTTAGA+AGG | + | chr4_1:75733451-75733470 | None:intergenic | 40.0% |
| ! | ACTTGCCTTTGGAAATTGCA+GGG | - | chr4_1:75733770-75733789 | Msa0572780:intron | 40.0% |
| AAGATCCCTGCAATTTCCAA+AGG | + | chr4_1:75733778-75733797 | None:intergenic | 40.0% | |
| TCTGATACCAGTTCAAAACC+AGG | + | chr4_1:75733813-75733832 | None:intergenic | 40.0% | |
| GTGTCAGGTCCTATTGTGTT+AGG | - | chr4_1:75727785-75727804 | Msa0572780:three_prime_UTR | 45.0% | |
| ACAATCCTCCATTCTTGCCT+TGG | - | chr4_1:75727893-75727912 | Msa0572780:exon | 45.0% | |
| TGATGTCTCCAAGGCAAGAA+TGG | + | chr4_1:75727904-75727923 | None:intergenic | 45.0% | |
| !! | TGATGATGGCTGCATTCACA+AGG | - | chr4_1:75728369-75728388 | Msa0572780:intron | 45.0% |
| AGCAGAATCTACTTGCAAGC+AGG | - | chr4_1:75728631-75728650 | Msa0572780:intron | 45.0% | |
| GCAGAATCTACTTGCAAGCA+GGG | - | chr4_1:75728632-75728651 | Msa0572780:intron | 45.0% | |
| CAATGTATCCTGTCTTCCCA+AGG | + | chr4_1:75729104-75729123 | None:intergenic | 45.0% | |
| ! | ACCCTTTAGGAGATAGAGTG+CGG | - | chr4_1:75729251-75729270 | Msa0572780:intron | 45.0% |
| !!! | TTTGGTTTTGGGGGTAGCAT+TGG | + | chr4_1:75729364-75729383 | None:intergenic | 45.0% |
| !!! | TCTGTGCAGGTTTGGTTTTG+GGG | + | chr4_1:75729374-75729393 | None:intergenic | 45.0% |
| CACACTGAAGTTGAAGGAGA+TGG | - | chr4_1:75729684-75729703 | Msa0572780:intron | 45.0% | |
| GAAGTTGAAGGAGATGGTCT+TGG | - | chr4_1:75729690-75729709 | Msa0572780:intron | 45.0% | |
| ! | ATGGAGGAGGTTGACTCAAA+AGG | - | chr4_1:75729879-75729898 | Msa0572780:intron | 45.0% |
| ! | GAGGTTGACTCAAAAGGAGA+TGG | - | chr4_1:75729885-75729904 | Msa0572780:intron | 45.0% |
| GCCTGTCAGGGATATAACTA+TGG | - | chr4_1:75730103-75730122 | Msa0572780:intron | 45.0% | |
| GCCATAGTTATATCCCTGAC+AGG | + | chr4_1:75730107-75730126 | None:intergenic | 45.0% | |
| TCGGTGTGCAAAACAAAGCT+GGG | + | chr4_1:75730134-75730153 | None:intergenic | 45.0% | |
| ATGTACGCTTGCTTAGGCTT+AGG | - | chr4_1:75730277-75730296 | Msa0572780:intron | 45.0% | |
| AACATCAACAGTCCTAGGCT+TGG | - | chr4_1:75730568-75730587 | Msa0572780:CDS | 45.0% | |
| CATATTCCAGCTCAAAGTGG+TGG | - | chr4_1:75730621-75730640 | Msa0572780:intron | 45.0% | |
| TTGTATCCACCACTTTGAGC+TGG | + | chr4_1:75730630-75730649 | None:intergenic | 45.0% | |
| GAGCATCAAACCAACTTGTG+TGG | - | chr4_1:75730652-75730671 | Msa0572780:intron | 45.0% | |
| GTAGCAGTATCCACACAAGT+TGG | + | chr4_1:75730665-75730684 | None:intergenic | 45.0% | |
| ACTGCTACACCAGCTCTATA+TGG | - | chr4_1:75730677-75730696 | Msa0572780:intron | 45.0% | |
| AGCAGCTCAATGGTCAATGA+TGG | - | chr4_1:75731041-75731060 | Msa0572780:CDS | 45.0% | |
| GCAGCTCAATGGTCAATGAT+GGG | - | chr4_1:75731042-75731061 | Msa0572780:CDS | 45.0% | |
| ! | CAAGCTGTCTTTTGTGGTTG+AGG | + | chr4_1:75731446-75731465 | None:intergenic | 45.0% |
| !! | TCATTTTTCCGCCTCTGGAT+TGG | - | chr4_1:75731814-75731833 | Msa0572780:CDS | 45.0% |
| AAAATGCACCAATCCAGAGG+CGG | + | chr4_1:75731825-75731844 | None:intergenic | 45.0% | |
| TCCGGTTGTTTAGAAAGGGT+TGG | - | chr4_1:75731887-75731906 | Msa0572780:intron | 45.0% | |
| CCCAACCCTTTCTAAACAAC+CGG | + | chr4_1:75731891-75731910 | None:intergenic | 45.0% | |
| CCGGTTGTTTAGAAAGGGTT+GGG | - | chr4_1:75731888-75731907 | Msa0572780:intron | 45.0% | |
| CGGTTGTTTAGAAAGGGTTG+GGG | - | chr4_1:75731889-75731908 | Msa0572780:intron | 45.0% | |
| GGTTGTTTAGAAAGGGTTGG+GGG | - | chr4_1:75731890-75731909 | Msa0572780:intron | 45.0% | |
| TAACCCCTCTATAATGGCAC+AGG | - | chr4_1:75732329-75732348 | Msa0572780:intron | 45.0% | |
| ! | ATGCCTGTGCCATTATAGAG+GGG | + | chr4_1:75732335-75732354 | None:intergenic | 45.0% |
| ATGTAACCGTGGTACCACAA+AGG | + | chr4_1:75732673-75732692 | None:intergenic | 45.0% | |
| ATGATTGCCTTGTCGTTGGT+AGG | - | chr4_1:75732881-75732900 | Msa0572780:intron | 45.0% | |
| ATATGGCATCAATGTCAGCG+AGG | - | chr4_1:75733060-75733079 | Msa0572780:intron | 45.0% | |
| AATTGAGGATCCCACACTCT+CGG | - | chr4_1:75733133-75733152 | Msa0572780:CDS | 45.0% | |
| CAATACTGACATGTGGCATG+TGG | - | chr4_1:75733491-75733510 | Msa0572780:intron | 45.0% | |
| ! | CACTTGCCTTTGGAAATTGC+AGG | - | chr4_1:75733769-75733788 | Msa0572780:intron | 45.0% |
| !!! | GCAGTTTCCTGGTTTTGAAC+TGG | - | chr4_1:75733803-75733822 | Msa0572780:intron | 45.0% |
| !!! | TAAATATAAAAAATTTTGTT+TGG | - | chr4_1:75730426-75730445 | Msa0572780:intron | 5.0% |
| TGTCTCCAAGGCAAGAATGG+AGG | + | chr4_1:75727901-75727920 | None:intergenic | 50.0% | |
| CTGTTTGACCTTGGGAAGAC+AGG | - | chr4_1:75729093-75729112 | Msa0572780:intron | 50.0% | |
| CCCGCACTCTATCTCCTAAA+GGG | + | chr4_1:75729255-75729274 | None:intergenic | 50.0% | |
| ! | CCCTTTAGGAGATAGAGTGC+GGG | - | chr4_1:75729252-75729271 | Msa0572780:intron | 50.0% |
| ACCCGCACTCTATCTCCTAA+AGG | + | chr4_1:75729256-75729275 | None:intergenic | 50.0% | |
| TAGGAGATAGAGTGCGGGTT+TGG | - | chr4_1:75729257-75729276 | Msa0572780:intron | 50.0% | |
| AGAGTGCGGGTTTGGATTCA+CGG | - | chr4_1:75729265-75729284 | Msa0572780:intron | 50.0% | |
| !!! | CTGTGCAGGTTTGGTTTTGG+GGG | + | chr4_1:75729373-75729392 | None:intergenic | 50.0% |
| ! | CTCGGTGTGCAAAACAAAGC+TGG | + | chr4_1:75730135-75730154 | None:intergenic | 50.0% |
| !!! | CAGCTTTGTTTTGCACACCG+AGG | - | chr4_1:75730133-75730152 | Msa0572780:intron | 50.0% |
| !!! | CTTTGTTTTGCACACCGAGG+TGG | - | chr4_1:75730136-75730155 | Msa0572780:intron | 50.0% |
| CTTGCACCAAACCGCGATTT+CGG | - | chr4_1:75730795-75730814 | Msa0572780:intron | 50.0% | |
| TTCATGCCGAAATCGCGGTT+TGG | + | chr4_1:75730804-75730823 | None:intergenic | 50.0% | |
| GGATCTTCATGCCGAAATCG+CGG | + | chr4_1:75730809-75730828 | None:intergenic | 50.0% | |
| AACAGAACCTCTTTGGCGAC+AGG | - | chr4_1:75731204-75731223 | Msa0572780:intron | 50.0% | |
| ACAGAACCTCTTTGGCGACA+GGG | - | chr4_1:75731205-75731224 | Msa0572780:intron | 50.0% | |
| AAGGGGCGATGACCTGTTAA+GGG | + | chr4_1:75732650-75732669 | None:intergenic | 50.0% | |
| ACCGTGGTACCACAAAGGAA+GGG | + | chr4_1:75732668-75732687 | None:intergenic | 50.0% | |
| AACCGTGGTACCACAAAGGA+AGG | + | chr4_1:75732669-75732688 | None:intergenic | 50.0% | |
| CGGTATGATTGCCTTGTCGT+TGG | - | chr4_1:75732877-75732896 | Msa0572780:intron | 50.0% | |
| ! | GTTGAGATTGCCGAGAGTGT+GGG | + | chr4_1:75733146-75733165 | None:intergenic | 50.0% |
| AGTTGAGATTGCCGAGAGTG+TGG | + | chr4_1:75733147-75733166 | None:intergenic | 50.0% | |
| !!! | TTTTGTGGTTGAGGCGCTGC+TGG | + | chr4_1:75731437-75731456 | None:intergenic | 55.0% |
| GAAGGGGCGATGACCTGTTA+AGG | + | chr4_1:75732651-75732670 | None:intergenic | 55.0% | |
| CCGTGGTACCACAAAGGAAG+GGG | + | chr4_1:75732667-75732686 | None:intergenic | 55.0% | |
| CCCCTTCCTTTGTGGTACCA+CGG | - | chr4_1:75732664-75732683 | Msa0572780:intron | 55.0% | |
| TGCTGACCCTGTCGCCAAAG+AGG | + | chr4_1:75731214-75731233 | None:intergenic | 60.0% | |
| GGTCATCGCCCCTTCCTTTG+TGG | - | chr4_1:75732656-75732675 | Msa0572780:CDS | 60.0% | |
| !! | GTGGTTGAGGCGCTGCTGGA+TGG | + | chr4_1:75731433-75731452 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 75727671 | 75734092 | 75727671 | ID=Msa0572780;Name=Msa0572780 |
| chr4_1 | mRNA | 75727671 | 75734092 | 75727671 | ID=Msa0572780-mRNA-1;Parent=Msa0572780;Name=Msa0572780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=175|0.92|0.93|1|0.92|0.93|15|229|449 |
| chr4_1 | exon | 75727671 | 75727972 | 75727671 | ID=Msa0572780-mRNA-1:exon:26308;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75729300 | 75729412 | 75729300 | ID=Msa0572780-mRNA-1:exon:26307;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75729549 | 75729629 | 75729549 | ID=Msa0572780-mRNA-1:exon:26306;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75730151 | 75730203 | 75730151 | ID=Msa0572780-mRNA-1:exon:26305;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75730299 | 75730407 | 75730299 | ID=Msa0572780-mRNA-1:exon:26304;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75730537 | 75730596 | 75730537 | ID=Msa0572780-mRNA-1:exon:26303;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75730687 | 75730769 | 75730687 | ID=Msa0572780-mRNA-1:exon:26302;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75730909 | 75731108 | 75730909 | ID=Msa0572780-mRNA-1:exon:26301;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75731775 | 75731887 | 75731775 | ID=Msa0572780-mRNA-1:exon:26300;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75731989 | 75732069 | 75731989 | ID=Msa0572780-mRNA-1:exon:26299;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75732629 | 75732681 | 75732629 | ID=Msa0572780-mRNA-1:exon:26298;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75732768 | 75732876 | 75732768 | ID=Msa0572780-mRNA-1:exon:26297;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75733110 | 75733169 | 75733110 | ID=Msa0572780-mRNA-1:exon:26296;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75733373 | 75733455 | 75733373 | ID=Msa0572780-mRNA-1:exon:26295;Parent=Msa0572780-mRNA-1 |
| chr4_1 | exon | 75733839 | 75734092 | 75733839 | ID=Msa0572780-mRNA-1:exon:26294;Parent=Msa0572780-mRNA-1 |
| chr4_1 | five_prime_UTR | 75733918 | 75734092 | 75733918 | ID=Msa0572780-mRNA-1:five_prime_utr;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75733839 | 75733917 | 75733839 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75733373 | 75733455 | 75733373 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75733110 | 75733169 | 75733110 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75732768 | 75732876 | 75732768 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75732629 | 75732681 | 75732629 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75731989 | 75732069 | 75731989 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75731775 | 75731887 | 75731775 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75730909 | 75731108 | 75730909 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75730687 | 75730769 | 75730687 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75730537 | 75730596 | 75730537 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75730299 | 75730407 | 75730299 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75730151 | 75730203 | 75730151 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75729549 | 75729629 | 75729549 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75729300 | 75729412 | 75729300 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | CDS | 75727900 | 75727972 | 75727900 | ID=Msa0572780-mRNA-1:cds;Parent=Msa0572780-mRNA-1 |
| chr4_1 | three_prime_UTR | 75727671 | 75727899 | 75727671 | ID=Msa0572780-mRNA-1:three_prime_utr;Parent=Msa0572780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
