AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0573460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573460 MtrunA17_Chr8g0389281 89.625 347 15 1 1 326 1 347 0.0 629
Msa0573460 MtrunA17_Chr1g0151691 70.336 327 76 1 21 326 2 328 1.18e-165 464
Msa0573460 MtrunA17_Chr1g0190891 57.507 353 122 2 1 325 1 353 2.67e-143 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573460 AT5G56750.1 71.221 344 78 1 1 323 1 344 0.0 506
Msa0573460 AT5G56750.2 72.222 324 69 1 21 323 2 325 1.12e-173 484
Msa0573460 AT2G19620.1 65.889 343 96 2 1 322 1 343 1.96e-166 467
Msa0573460 AT5G11790.1 67.246 345 91 3 1 324 1 344 2.79e-163 459
Msa0573460 AT2G19620.2 66.873 323 86 2 21 322 2 324 1.60e-159 449
Msa0573460 AT2G19620.3 69.259 270 83 0 53 322 20 289 5.50e-143 405
Msa0573460 AT5G11790.2 74.615 260 65 1 65 324 32 290 7.71e-142 402

Find 115 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGAAACACGCGTCTTTA+TGG 0.099306 4_1:-76662672 None:intergenic
ATTCATATTCATAATATTTA+TGG 0.105530 4_1:+76663008 Msa0573460:three_prime_UTR
AGCTTCAACCCCATGCTTTC+CGG 0.245987 4_1:-76662644 None:intergenic
CCTTATGCAAATCACCTTCT+TGG 0.256328 4_1:+76661082 Msa0573460:CDS
TGATTCCGTTTCAGTTGATA+TGG 0.277119 4_1:+76658842 Msa0573460:CDS
TCTAATCCTTCTGTAATATC+AGG 0.279231 4_1:-76661710 None:intergenic
TTTCTCTTCTTCTTCTTGTA+TGG 0.294570 4_1:-76658644 None:intergenic
GATATGGAAAAGATCTTTCT+TGG 0.298817 4_1:+76658858 Msa0573460:CDS
TTTAGTGCGGTCTTGAATAA+AGG 0.300865 4_1:+76662938 Msa0573460:three_prime_UTR
AGCGAAACACGCGTCTTTAT+GGG 0.326221 4_1:-76662671 None:intergenic
AAAAGAGGTATGGTAGAGTT+TGG 0.331848 4_1:+76662808 Msa0573460:three_prime_UTR
ATGGGCTAAGTGGGCTCCTT+GGG 0.341176 4_1:-76662595 None:intergenic
TTACAATTTAGCGCTAAATC+TGG 0.346152 4_1:-76660054 None:intergenic
TGATGGGGTATGGGTTGTAT+AGG 0.367144 4_1:+76662552 Msa0573460:CDS
GATGGGCTAAGTGGGCTCCT+TGG 0.387609 4_1:-76662596 None:intergenic
CAACAAGAGTTCTTGCAGTT+AGG 0.388719 4_1:+76660676 Msa0573460:CDS
AAGAAGAGAGAGAAAATTGT+TGG 0.392374 4_1:+76658741 Msa0573460:five_prime_UTR
TATTTATCTGTAAATCCAAT+TGG 0.398532 4_1:+76662974 Msa0573460:three_prime_UTR
TTCTTTGAAGTTCTTCAGAA+AGG 0.400309 4_1:+76658780 Msa0573460:five_prime_UTR
CAGGAGCATCATATTCAAAC+TGG 0.411787 4_1:+76659970 Msa0573460:intron
ATTAAGGGGTCAATGATTGC+TGG 0.415224 4_1:-76663034 None:intergenic
TGTGTTGTTGTTTATGTGTC+AGG 0.418622 4_1:-76658703 None:intergenic
GCTTGGTGCTGTGATGTGTA+TGG 0.420350 4_1:+76660880 Msa0573460:CDS
TCCGTATCTGTCATAGTCTA+CGG 0.422806 4_1:+76660000 Msa0573460:CDS
GAGATATATATTAATAATGT+AGG 0.428351 4_1:+76662869 Msa0573460:three_prime_UTR
CATAAAGACGCGTGTTTCGC+TGG 0.429083 4_1:+76662673 Msa0573460:CDS
AATCACCTTCTTGGACTGAA+TGG 0.429118 4_1:+76661091 Msa0573460:CDS
TCTTTGAAGTTCTTCAGAAA+GGG 0.429525 4_1:+76658781 Msa0573460:five_prime_UTR
CTTCTTTCTCCGGAAAGCAT+GGG 0.432890 4_1:+76662635 Msa0573460:CDS
CTCCCCGGAGCTTCTTTCTC+CGG 0.435564 4_1:+76662625 Msa0573460:CDS
GAATATAGCTAGAGTCCAAT+TGG 0.436757 4_1:-76662989 None:intergenic
TGAAGAACTTCAAAGAAAGA+AGG 0.444254 4_1:-76658774 None:intergenic
AAATATAGGAATCGCGTTGT+TGG 0.444613 4_1:+76661042 Msa0573460:CDS
TCAAATTTGTTACATTTCTA+CGG 0.444894 4_1:+76661214 Msa0573460:CDS
TGCCCCTTCCGCTGAAGACT+TGG 0.450271 4_1:+76660726 Msa0573460:CDS
TATTTACATAGTTTCTCCTC+TGG 0.455521 4_1:+76660648 Msa0573460:intron
CCAAGAAGGTGATTTGCATA+AGG 0.456659 4_1:-76661082 None:intergenic
TGTCATAGTCTACGGGGATC+AGG 0.457074 4_1:+76660008 Msa0573460:CDS
GCTTCTTTCTCCGGAAAGCA+TGG 0.467061 4_1:+76662634 Msa0573460:CDS
GGATAGCCTCAGAATGGAAT+GGG 0.467778 4_1:-76661775 None:intergenic
CCGTATCTGTCATAGTCTAC+GGG 0.478296 4_1:+76660001 Msa0573460:CDS
AAGAAGAAGAGAAAGAAAAG+AGG 0.481042 4_1:+76658653 Msa0573460:five_prime_UTR
CAAGAAGGTGATTTGCATAA+GGG 0.481118 4_1:-76661081 None:intergenic
AAGATTTAGTGCCTTGGTTG+AGG 0.482830 4_1:+76661820 Msa0573460:CDS
CAGAGATAGAGAAAGAAAAG+AGG 0.485980 4_1:+76662793 Msa0573460:three_prime_UTR
AGAGGTATGGTAGAGTTTGG+AGG 0.485998 4_1:+76662811 Msa0573460:three_prime_UTR
AGAGAAAATTGTTGGGTGGG+TGG 0.487770 4_1:+76658749 Msa0573460:five_prime_UTR
TGATAGAAGATTTAGTGCCT+TGG 0.501311 4_1:+76661814 Msa0573460:CDS
TGCCAAGTCTTCAGCGGAAG+GGG 0.501435 4_1:-76660728 None:intergenic
CTTTCCGGAGAAAGAAGCTC+CGG 0.501653 4_1:-76662629 None:intergenic
GAGGTATGGTAGAGTTTGGA+GGG 0.510380 4_1:+76662812 Msa0573460:three_prime_UTR
GAGAGAGAAAATTGTTGGGT+GGG 0.512997 4_1:+76658746 Msa0573460:five_prime_UTR
TAATGTAGGGAGGGGAGGAG+AGG 0.513246 4_1:+76662883 Msa0573460:three_prime_UTR
ATAGAGAAAGAAAAGAGGTA+TGG 0.513983 4_1:+76662798 Msa0573460:three_prime_UTR
GCTTGAACTATCTCTGACTC+TGG 0.514137 4_1:-76661391 None:intergenic
CTTTGAAGTTCTTCAGAAAG+GGG 0.516116 4_1:+76658782 Msa0573460:five_prime_UTR
TGTTTGCAGGTCCAGGCTTG+TGG 0.517552 4_1:+76662473 Msa0573460:intron
AAAGATCTTTCTTGGTGGAA+AGG 0.519204 4_1:+76658866 Msa0573460:CDS
TATATTAATAATGTAGGGAG+GGG 0.523069 4_1:+76662875 Msa0573460:three_prime_UTR
GGGCTGTGACTGAACTTGCA+TGG 0.530749 4_1:-76662575 None:intergenic
AAAGAATCGAATTGTGACAT+TGG 0.535573 4_1:+76658599 Msa0573460:five_prime_UTR
ATGGAAAAGATCTTTCTTGG+TGG 0.538424 4_1:+76658861 Msa0573460:CDS
AGATGCAAGATGGGCTAAGT+GGG 0.538699 4_1:-76662604 None:intergenic
AGCTCCGGGGAGATGCAAGA+TGG 0.541313 4_1:-76662614 None:intergenic
CTTGGTGCTGTGATGTGTAT+GGG 0.542761 4_1:+76660881 Msa0573460:CDS
TCACCATTGATCCACAAGCC+TGG 0.543442 4_1:-76662484 None:intergenic
GCATGCGATGCTGATACCTA+TGG 0.544656 4_1:+76662520 Msa0573460:CDS
GGTCCAGGCTTGTGGATCAA+TGG 0.547337 4_1:+76662481 Msa0573460:intron
CAACTTTATCAGGAAGTTCG+CGG 0.549393 4_1:+76661355 Msa0573460:intron
TGGATAGCCTCAGAATGGAA+TGG 0.551882 4_1:-76661776 None:intergenic
TTCTTTCTCCGGAAAGCATG+GGG 0.553544 4_1:+76662636 Msa0573460:CDS
ATTAATAATGTAGGGAGGGG+AGG 0.556948 4_1:+76662878 Msa0573460:three_prime_UTR
TAGCCCATCTTGCATCTCCC+CGG 0.558551 4_1:+76662610 Msa0573460:CDS
CATCATATTCAAACTGGCTG+TGG 0.559367 4_1:+76659976 Msa0573460:CDS
AGATATATATTAATAATGTA+GGG 0.561752 4_1:+76662870 Msa0573460:three_prime_UTR
GCTCCGGGGAGATGCAAGAT+GGG 0.562541 4_1:-76662613 None:intergenic
AGAAGAGAGAGAAAATTGTT+GGG 0.568050 4_1:+76658742 Msa0573460:five_prime_UTR
TCTGGATAAGTGATCAGAGC+TGG 0.568548 4_1:-76660036 None:intergenic
GAGATGCAAGATGGGCTAAG+TGG 0.573247 4_1:-76662605 None:intergenic
TTTCCGGAGAAAGAAGCTCC+GGG 0.574094 4_1:-76662628 None:intergenic
ATATATTAATAATGTAGGGA+GGG 0.574991 4_1:+76662874 Msa0573460:three_prime_UTR
CAGTTCCCCATTCCATTCTG+AGG 0.577238 4_1:+76661769 Msa0573460:CDS
GGAATCATTTGATTCTGCCA+TGG 0.577286 4_1:-76658826 None:intergenic
TCATGTGGATAGCCTCAGAA+TGG 0.577878 4_1:-76661781 None:intergenic
TATATATTAATAATGTAGGG+AGG 0.580460 4_1:+76662873 Msa0573460:three_prime_UTR
AGAGAGAGAAAATTGTTGGG+TGG 0.580911 4_1:+76658745 Msa0573460:five_prime_UTR
GAAAGAAAACAAATGTCTTG+CGG 0.581540 4_1:+76661576 Msa0573460:CDS
CTGCCAAGTCTTCAGCGGAA+GGG 0.583824 4_1:-76660729 None:intergenic
TAAAAGAGTGTTTACTTCAG+CGG 0.584282 4_1:+76661251 Msa0573460:CDS
GCAAGTTCAGTCACAGCCCA+AGG 0.585749 4_1:+76662579 Msa0573460:CDS
TTACATTTCTACGGCATGTG+TGG 0.586202 4_1:+76661223 Msa0573460:CDS
AGACTTGGCAGATCAAATAG+TGG 0.587192 4_1:+76660741 Msa0573460:CDS
AACTCTTGTTGAAGTTCCAG+AGG 0.590898 4_1:-76660664 None:intergenic
CCCGTAGACTATGACAGATA+CGG 0.591367 4_1:-76660001 None:intergenic
TATCAAGTTTCGAAGTCATG+TGG 0.597724 4_1:-76661796 None:intergenic
TAAAACCATTCAGTCCAAGA+AGG 0.602523 4_1:-76661096 None:intergenic
TCTGCCAAGTCTTCAGCGGA+AGG 0.604002 4_1:-76660730 None:intergenic
AGGAGGCCTGATATTACAGA+AGG 0.604098 4_1:+76661704 Msa0573460:intron
ATGTGTATGGGAGTAACGGC+TGG 0.609518 4_1:+76660893 Msa0573460:CDS
GGTATGGTAGAGTTTGGAGG+GGG 0.612771 4_1:+76662814 Msa0573460:three_prime_UTR
TGTCGGTGGTTGTTAACCGT+AGG 0.623522 4_1:+76658529 None:intergenic
ACTTCAGCGGTACTTCAGCA+AGG 0.629263 4_1:+76661264 Msa0573460:CDS
TTGATCTGCCAAGTCTTCAG+CGG 0.631136 4_1:-76660734 None:intergenic
ATCATCAAGAGCGACATCCA+TGG 0.635085 4_1:+76658809 Msa0573460:exon
TGTGATGTGTATGGGAGTAA+CGG 0.638338 4_1:+76660889 Msa0573460:CDS
GATAGTTCAAGCTTGCCGAA+AGG 0.640690 4_1:+76661402 Msa0573460:CDS
TTGTGGATCAATGGTGACAG+AGG 0.643977 4_1:+76662490 Msa0573460:CDS
CCCATCAGAAAATACTCCAT+AGG 0.649901 4_1:-76662536 None:intergenic
AGGTATGGTAGAGTTTGGAG+GGG 0.662668 4_1:+76662813 Msa0573460:three_prime_UTR
CTTGGCAGATCAAATAGTGG+AGG 0.676605 4_1:+76660744 Msa0573460:CDS
CGTATCTGTCATAGTCTACG+GGG 0.684308 4_1:+76660002 Msa0573460:CDS
ATAGGTATCAGCATCGCATG+CGG 0.699214 4_1:-76662518 None:intergenic
GATAGCCTCAGAATGGAATG+GGG 0.713909 4_1:-76661774 None:intergenic
GGATATACATACCTCAACCA+AGG 0.717535 4_1:-76661831 None:intergenic
TTCCGGAGAAAGAAGCTCCG+GGG 0.722655 4_1:-76662627 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAT+TGG + chr4_1:76658963-76658982 Msa0573460:intron 0.0%
!!! TTTTTTTTTTTTTTTTTATT+GGG + chr4_1:76658964-76658983 Msa0573460:intron 0.0%
!!! AAAGGTATAATTTTTTTTAA+TGG + chr4_1:76658884-76658903 Msa0573460:intron 10.0%
!!! AAGGTATAATTTTTTTTAAT+GGG + chr4_1:76658885-76658904 Msa0573460:intron 10.0%
!! ACTATGTAAATAATAATATT+CGG - chr4_1:76660640-76660659 None:intergenic 10.0%
!! AGATATATATTAATAATGTA+GGG + chr4_1:76662870-76662889 Msa0573460:three_prime_UTR 10.0%
!! ATTCATATTCATAATATTTA+TGG + chr4_1:76663008-76663027 Msa0573460:three_prime_UTR 10.0%
!!! ATAATTTTTTTTAATGGGTT+TGG + chr4_1:76658890-76658909 Msa0573460:intron 15.0%
!!! TAATTTTTTTTAATGGGTTT+GGG + chr4_1:76658891-76658910 Msa0573460:intron 15.0%
!!! TTTGTTATTTTGAAGAATAA+TGG + chr4_1:76658939-76658958 Msa0573460:intron 15.0%
!!! TTGTTATTTTGAAGAATAAT+GGG + chr4_1:76658940-76658959 Msa0573460:intron 15.0%
!!! TTTTTTTTTATTGGGTTTAA+AGG + chr4_1:76658972-76658991 Msa0573460:intron 15.0%
!!! ATTTTGTATGTTTTTTTGAA+CGG + chr4_1:76658998-76659017 Msa0573460:intron 15.0%
!!! TTTTTCTTCTTTCAATAATT+AGG + chr4_1:76659034-76659053 Msa0573460:intron 15.0%
!!! TTTTCTTCTTTCAATAATTA+GGG + chr4_1:76659035-76659054 Msa0573460:intron 15.0%
!!! CTTTTACTTTATGTTTATTT+GGG + chr4_1:76659546-76659565 Msa0573460:intron 15.0%
!!! TTTTACTTTATGTTTATTTG+GGG + chr4_1:76659547-76659566 Msa0573460:intron 15.0%
!!! TTGATTTACTGATTAAAATT+TGG - chr4_1:76661647-76661666 None:intergenic 15.0%
!! TGAAGAAAAAAATAAAAAAG+TGG - chr4_1:76662751-76662770 None:intergenic 15.0%
!! GAGATATATATTAATAATGT+AGG + chr4_1:76662869-76662888 Msa0573460:three_prime_UTR 15.0%
!!! TTTTTGTTTTTCCAGAATAA+TGG + chr4_1:76658914-76658933 Msa0573460:intron 20.0%
!!! TTTTGTTTTTCCAGAATAAT+GGG + chr4_1:76658915-76658934 Msa0573460:intron 20.0%
!!! TTTTGTATGTTTTTTTGAAC+GGG + chr4_1:76658999-76659018 Msa0573460:intron 20.0%
!!! GTTTTAAGTGATTAATGATT+TGG + chr4_1:76659057-76659076 Msa0573460:intron 20.0%
!!! GATTATCTTATTTATGAATG+TGG + chr4_1:76659169-76659188 Msa0573460:intron 20.0%
!!! TATCAATTGTTTAAAGTCAA+TGG + chr4_1:76659195-76659214 Msa0573460:intron 20.0%
!!! ATCAATTGTTTAAAGTCAAT+GGG + chr4_1:76659196-76659215 Msa0573460:intron 20.0%
!! TTCAAAGAAAGAAAACAAAA+AGG - chr4_1:76659318-76659337 None:intergenic 20.0%
!!! ATTTTCTCATGTTATGAATT+TGG + chr4_1:76659350-76659369 Msa0573460:intron 20.0%
!!! TTTTCTCATGTTATGAATTT+GGG + chr4_1:76659351-76659370 Msa0573460:intron 20.0%
!! CCAAATAAACATAAAGTAAA+AGG - chr4_1:76659548-76659567 None:intergenic 20.0%
!!! CCTTTTACTTTATGTTTATT+TGG + chr4_1:76659545-76659564 Msa0573460:intron 20.0%
!!! ATGTATGTAAATACTTTTGT+TGG + chr4_1:76659572-76659591 Msa0573460:intron 20.0%
!! ATAAGGTTAAAATTCCTAAA+TGG - chr4_1:76659823-76659842 None:intergenic 20.0%
!! TATTTCCAGAGTAAATTAAA+AGG - chr4_1:76660440-76660459 None:intergenic 20.0%
!!! TGTTTTTACAGATGAAATAT+AGG + chr4_1:76661028-76661047 Msa0573460:intron 20.0%
!! TGTATCAAAGAATTCATAAA+AGG - chr4_1:76661155-76661174 None:intergenic 20.0%
!! TACAAATTATTAATCGTTTC+AGG - chr4_1:76661187-76661206 None:intergenic 20.0%
!!! TGAAACGATTAATAATTTGT+AGG + chr4_1:76661186-76661205 Msa0573460:intron 20.0%
!!! TCAAATTTGTTACATTTCTA+CGG + chr4_1:76661214-76661233 Msa0573460:CDS 20.0%
!! TCAACTTATGAAATAAAAGA+GGG - chr4_1:76661324-76661343 None:intergenic 20.0%
!! TTCAACTTATGAAATAAAAG+AGG - chr4_1:76661325-76661344 None:intergenic 20.0%
!! TATATATTAATAATGTAGGG+AGG + chr4_1:76662873-76662892 Msa0573460:three_prime_UTR 20.0%
!! ATATATTAATAATGTAGGGA+GGG + chr4_1:76662874-76662893 Msa0573460:three_prime_UTR 20.0%
!! TATTTATCTGTAAATCCAAT+TGG + chr4_1:76662974-76662993 Msa0573460:three_prime_UTR 20.0%
!!! ACTTCGTTTTTTTTAACCTA+CGG - chr4_1:76658548-76658567 None:intergenic 25.0%
!!! TTCTTCTTGTATGGTTTTAA+TGG - chr4_1:76658638-76658657 None:intergenic 25.0%
!! TTTTCTCTCTCTTCTTTTAT+GGG - chr4_1:76658737-76658756 None:intergenic 25.0%
!! ATTTTCTCTCTCTTCTTTTA+TGG - chr4_1:76658738-76658757 None:intergenic 25.0%
! AATAACAAAACCCATTATTC+TGG - chr4_1:76658928-76658947 None:intergenic 25.0%
!!! TTTGTATGTTTTTTTGAACG+GGG + chr4_1:76659000-76659019 Msa0573460:intron 25.0%
!!! AACAAGAAACGTTTTTTACT+TGG + chr4_1:76659239-76659258 Msa0573460:intron 25.0%
! ACTCTTGTGAAAAATTAATG+AGG + chr4_1:76659270-76659289 Msa0573460:intron 25.0%
! ACAAAAAGGATTACAGAAAA+AGG - chr4_1:76659304-76659323 None:intergenic 25.0%
!! GCATTTGTGAATTTTACATT+TGG + chr4_1:76659415-76659434 Msa0573460:intron 25.0%
!! TTTGTGAATTTTACATTTGG+TGG + chr4_1:76659418-76659437 Msa0573460:intron 25.0%
! TGTCTTCAATTATTAGAATC+TGG + chr4_1:76659679-76659698 Msa0573460:intron 25.0%
! CATTTAGAAAACAAATAGCT+TGG + chr4_1:76659790-76659809 Msa0573460:intron 25.0%
!!! GAATTTTAACCTTATCCAAA+TGG + chr4_1:76659828-76659847 Msa0573460:intron 25.0%
!!! ATATTCTTTGCTTTTGATGA+AGG + chr4_1:76659870-76659889 Msa0573460:intron 25.0%
!! TGCTATGTTGATTATGATTA+TGG + chr4_1:76659936-76659955 Msa0573460:intron 25.0%
!!! TTAAGCTATTTTTCCAAACA+GGG - chr4_1:76660091-76660110 None:intergenic 25.0%
!!! ATTAAGCTATTTTTCCAAAC+AGG - chr4_1:76660092-76660111 None:intergenic 25.0%
! AATCAGCTGTAAACAATTTA+TGG + chr4_1:76660251-76660270 Msa0573460:intron 25.0%
!!! ATTGTCCTTTTAATTTACTC+TGG + chr4_1:76660432-76660451 Msa0573460:intron 25.0%
! TGAGTTAATATTTACTTGCA+TGG + chr4_1:76660460-76660479 Msa0573460:intron 25.0%
!! ATATTTACTTGCATGGATTA+TGG + chr4_1:76660467-76660486 Msa0573460:intron 25.0%
! TTCTTTCCATCAAGTTAAAA+GGG - chr4_1:76660951-76660970 None:intergenic 25.0%
! TTTCTTTCCATCAAGTTAAA+AGG - chr4_1:76660952-76660971 None:intergenic 25.0%
! CTTGATGGAAAGAAAATATT+AGG + chr4_1:76660957-76660976 Msa0573460:intron 25.0%
!! TTACTGATTAAAATTTGGTC+AGG - chr4_1:76661642-76661661 None:intergenic 25.0%
! TATTAGAGAAACCATTAGAA+AGG + chr4_1:76662061-76662080 Msa0573460:intron 25.0%
! GTTCTATCATAAACCATATT+TGG - chr4_1:76662110-76662129 None:intergenic 25.0%
! ATTTAGAGATAGAAAACTGT+GGG - chr4_1:76662268-76662287 None:intergenic 25.0%
! TCTAAATCAATGATAGCAAT+TGG + chr4_1:76662281-76662300 Msa0573460:intron 25.0%
! ATGAATGTTTATCTTATAGC+AGG + chr4_1:76662379-76662398 Msa0573460:intron 25.0%
! TGAATGTTTATCTTATAGCA+GGG + chr4_1:76662380-76662399 Msa0573460:intron 25.0%
! AACTAACTATAGAAATCATG+CGG - chr4_1:76662415-76662434 None:intergenic 25.0%
! ACGATGAACATATAATAACT+TGG + chr4_1:76662444-76662463 Msa0573460:intron 25.0%
! TATATTAATAATGTAGGGAG+GGG + chr4_1:76662875-76662894 Msa0573460:three_prime_UTR 25.0%
!!! ACTTTGATTCATTTTTAGTG+CGG + chr4_1:76662925-76662944 Msa0573460:three_prime_UTR 25.0%
AAAGAATCGAATTGTGACAT+TGG + chr4_1:76658599-76658618 Msa0573460:five_prime_UTR 30.0%
TTTCTCTTCTTCTTCTTGTA+TGG - chr4_1:76658647-76658666 None:intergenic 30.0%
AAGAAGAAGAGAAAGAAAAG+AGG + chr4_1:76658653-76658672 Msa0573460:five_prime_UTR 30.0%
AAGAAGAGAGAGAAAATTGT+TGG + chr4_1:76658741-76658760 Msa0573460:five_prime_UTR 30.0%
AGAAGAGAGAGAAAATTGTT+GGG + chr4_1:76658742-76658761 Msa0573460:five_prime_UTR 30.0%
TGAAGAACTTCAAAGAAAGA+AGG - chr4_1:76658777-76658796 None:intergenic 30.0%
!! TTCTTTGAAGTTCTTCAGAA+AGG + chr4_1:76658780-76658799 Msa0573460:five_prime_UTR 30.0%
!! TCTTTGAAGTTCTTCAGAAA+GGG + chr4_1:76658781-76658800 Msa0573460:five_prime_UTR 30.0%
! CTTTTCCATATCAACTGAAA+CGG - chr4_1:76658850-76658869 None:intergenic 30.0%
GATATGGAAAAGATCTTTCT+TGG + chr4_1:76658858-76658877 Msa0573460:CDS 30.0%
! GTGCTGCATTTTATGTTTTT+TGG + chr4_1:76659147-76659166 Msa0573460:intron 30.0%
! GTTATGAATTTGGGATATAG+TGG + chr4_1:76659360-76659379 Msa0573460:intron 30.0%
GCAGAAATATGTGACAAATA+AGG - chr4_1:76659397-76659416 None:intergenic 30.0%
GAAATTGTCAGATTTGGATT+TGG + chr4_1:76659455-76659474 Msa0573460:intron 30.0%
!! CTTTTTGCTTTTGTTCTTTG+TGG + chr4_1:76659479-76659498 Msa0573460:intron 30.0%
! CAGTATCTTAGGCTTTTTAA+AGG - chr4_1:76659635-76659654 None:intergenic 30.0%
TAGTTTGGTTGTCCAATAAA+AGG + chr4_1:76659758-76659777 Msa0573460:intron 30.0%
AGTTTGGTTGTCCAATAAAA+GGG + chr4_1:76659759-76659778 Msa0573460:intron 30.0%
CATTATGAATGTAGTCCATT+TGG - chr4_1:76659846-76659865 None:intergenic 30.0%
TAATCAACATAGCATAAGCA+GGG - chr4_1:76659930-76659949 None:intergenic 30.0%
ATAATCAACATAGCATAAGC+AGG - chr4_1:76659931-76659950 None:intergenic 30.0%
GATTATGGATTTACCATTTC+AGG + chr4_1:76659951-76659970 Msa0573460:intron 30.0%
TTACAATTTAGCGCTAAATC+TGG - chr4_1:76660057-76660076 None:intergenic 30.0%
! CTGATTTTATTAAGCTCTTC+AGG - chr4_1:76660237-76660256 None:intergenic 30.0%
TAAACTATCGTGAGACTATT+TGG - chr4_1:76660307-76660326 None:intergenic 30.0%
!! GTCAACTGATTTGAATGTAT+TGG + chr4_1:76660599-76660618 Msa0573460:intron 30.0%
TATTTACATAGTTTCTCCTC+TGG + chr4_1:76660648-76660667 Msa0573460:intron 30.0%
TACATACTGCAAAAAGAGTA+AGG - chr4_1:76660928-76660947 None:intergenic 30.0%
!!! TATGTACCCTTTTAACTTGA+TGG + chr4_1:76660942-76660961 Msa0573460:intron 30.0%
!!! TTGTTGATTTGTTCCTTTTC+TGG + chr4_1:76661003-76661022 Msa0573460:intron 30.0%
!!! GACTGAATGGTTTTATAACA+AGG + chr4_1:76661104-76661123 Msa0573460:CDS 30.0%
!! TAAAAGAGTGTTTACTTCAG+CGG + chr4_1:76661251-76661270 Msa0573460:CDS 30.0%
GAAAGAAAACAAATGTCTTG+CGG + chr4_1:76661576-76661595 Msa0573460:CDS 30.0%
TCTAATCCTTCTGTAATATC+AGG - chr4_1:76661713-76661732 None:intergenic 30.0%
ATCAAATTTCGAAGTCATGT+GGG - chr4_1:76661856-76661875 None:intergenic 30.0%
TATCAAATTTCGAAGTCATG+TGG - chr4_1:76661857-76661876 None:intergenic 30.0%
ACATGACTTCGAAATTTGAT+AGG + chr4_1:76661856-76661875 Msa0573460:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr4_1:76661994-76662013 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr4_1:76661995-76662014 Msa0573460:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - chr4_1:76662053-76662072 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr4_1:76662070-76662089 Msa0573460:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr4_1:76662114-76662133 Msa0573460:intron 30.0%
GATTTAGAGATAGAAAACTG+TGG - chr4_1:76662269-76662288 None:intergenic 30.0%
TTATCTTATAGCAGGGAATT+CGG + chr4_1:76662387-76662406 Msa0573460:intron 30.0%
GATTTCTATAGTTAGTTGAC+CGG + chr4_1:76662418-76662437 Msa0573460:intron 30.0%
ATAGAGAAAGAAAAGAGGTA+TGG + chr4_1:76662798-76662817 Msa0573460:three_prime_UTR 30.0%
!! TGTGTTGTTGTTTATGTGTC+AGG - chr4_1:76658706-76658725 None:intergenic 35.0%
!! CTTTGAAGTTCTTCAGAAAG+GGG + chr4_1:76658782-76658801 Msa0573460:five_prime_UTR 35.0%
! TGATTCCGTTTCAGTTGATA+TGG + chr4_1:76658842-76658861 Msa0573460:CDS 35.0%
ATGGAAAAGATCTTTCTTGG+TGG + chr4_1:76658861-76658880 Msa0573460:CDS 35.0%
AAAGATCTTTCTTGGTGGAA+AGG + chr4_1:76658866-76658885 Msa0573460:CDS 35.0%
!! TTTGGTGGTTCTTTTTCTCA+TGG + chr4_1:76659433-76659452 Msa0573460:intron 35.0%
CTCATGGAAATTGTCAGATT+TGG + chr4_1:76659449-76659468 Msa0573460:intron 35.0%
TTGTGGTATCTGATGCAATT+TGG + chr4_1:76659496-76659515 Msa0573460:intron 35.0%
TGTGGTATCTGATGCAATTT+GGG + chr4_1:76659497-76659516 Msa0573460:intron 35.0%
TACAAAGAGGACAGTATCTT+AGG - chr4_1:76659646-76659665 None:intergenic 35.0%
AGCTTGGAAAAGTTCCATTT+AGG + chr4_1:76659806-76659825 Msa0573460:intron 35.0%
GAATGTAGTCCATTTGGATA+AGG - chr4_1:76659840-76659859 None:intergenic 35.0%
AATCAACATAGCATAAGCAG+GGG - chr4_1:76659929-76659948 None:intergenic 35.0%
TGAATATGATGCTCCTGAAA+TGG - chr4_1:76659967-76659986 None:intergenic 35.0%
AGACTATTTGGTAGAGCTTA+TGG - chr4_1:76660295-76660314 None:intergenic 35.0%
CTCACGATAGTTTATTTCAG+TGG + chr4_1:76660313-76660332 Msa0573460:intron 35.0%
ATATATCATATCAGTCCTCC+TGG + chr4_1:76660561-76660580 Msa0573460:intron 35.0%
! TGGAGGTTCTCAACTATTTT+AGG + chr4_1:76660761-76660780 Msa0573460:CDS 35.0%
TGGACAGGATATAATTCATG+CGG - chr4_1:76660859-76660878 None:intergenic 35.0%
CTGTAAAAACATGCCAGAAA+AGG - chr4_1:76661019-76661038 None:intergenic 35.0%
AAATATAGGAATCGCGTTGT+TGG + chr4_1:76661042-76661061 Msa0573460:CDS 35.0%
! CAAGAAGGTGATTTGCATAA+GGG - chr4_1:76661084-76661103 None:intergenic 35.0%
TAAAACCATTCAGTCCAAGA+AGG - chr4_1:76661099-76661118 None:intergenic 35.0%
ACAATCTGCAAGGATTTGAA+AGG - chr4_1:76661132-76661151 None:intergenic 35.0%
TCATAAAAGGACAATCTGCA+AGG - chr4_1:76661142-76661161 None:intergenic 35.0%
TTTCCTTGCTCAACTTTATC+AGG + chr4_1:76661345-76661364 Msa0573460:intron 35.0%
! TCAAGTGATAGAGTACTACA+GGG - chr4_1:76661455-76661474 None:intergenic 35.0%
! TTCAAGTGATAGAGTACTAC+AGG - chr4_1:76661456-76661475 None:intergenic 35.0%
AATGTGAGTACACCAAACAA+GGG - chr4_1:76661507-76661526 None:intergenic 35.0%
! TTATTGTCTTGCTAACTTGC+AGG + chr4_1:76661684-76661703 Msa0573460:intron 35.0%
TATCAAGTTTCGAAGTCATG+TGG - chr4_1:76661799-76661818 None:intergenic 35.0%
TGATAGAAGATTTAGTGCCT+TGG + chr4_1:76661814-76661833 Msa0573460:CDS 35.0%
TCAAATTTCGAAGTCATGTG+GGG - chr4_1:76661855-76661874 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr4_1:76661998-76662017 Msa0573460:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr4_1:76662075-76662094 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr4_1:76662094-76662113 Msa0573460:intron 35.0%
ATTATATGTTCATCGTCGTC+CGG - chr4_1:76662440-76662459 None:intergenic 35.0%
!! AACTTGGTAATGTTGTTTGC+AGG + chr4_1:76662460-76662479 Msa0573460:intron 35.0%
!! ACCTATGGAGTATTTTCTGA+TGG + chr4_1:76662535-76662554 Msa0573460:CDS 35.0%
!! CCTATGGAGTATTTTCTGAT+GGG + chr4_1:76662536-76662555 Msa0573460:CDS 35.0%
!! CTATGGAGTATTTTCTGATG+GGG + chr4_1:76662537-76662556 Msa0573460:CDS 35.0%
! AGTATTTTCTGATGGGGTAT+GGG + chr4_1:76662543-76662562 Msa0573460:CDS 35.0%
CAGAGATAGAGAAAGAAAAG+AGG + chr4_1:76662793-76662812 Msa0573460:three_prime_UTR 35.0%
! AAAAGAGGTATGGTAGAGTT+TGG + chr4_1:76662808-76662827 Msa0573460:three_prime_UTR 35.0%
TTTAGTGCGGTCTTGAATAA+AGG + chr4_1:76662938-76662957 Msa0573460:three_prime_UTR 35.0%
GAATATAGCTAGAGTCCAAT+TGG - chr4_1:76662992-76663011 None:intergenic 35.0%
AGAGAGAGAAAATTGTTGGG+TGG + chr4_1:76658745-76658764 Msa0573460:five_prime_UTR 40.0%
GAGAGAGAAAATTGTTGGGT+GGG + chr4_1:76658746-76658765 Msa0573460:five_prime_UTR 40.0%
GGAATCATTTGATTCTGCCA+TGG - chr4_1:76658829-76658848 None:intergenic 40.0%
TGATGCAATTTGGGTGATGT+AGG + chr4_1:76659506-76659525 Msa0573460:intron 40.0%
AGTTGAAGACAGCTACAAAG+AGG - chr4_1:76659659-76659678 None:intergenic 40.0%
!! TGTGCTTTTGCTTGCTAGTT+TGG + chr4_1:76659743-76659762 Msa0573460:intron 40.0%
GTTGTCCAATAAAAGGGCAA+GGG + chr4_1:76659765-76659784 Msa0573460:intron 40.0%
!! CAGGAGCATCATATTCAAAC+TGG + chr4_1:76659970-76659989 Msa0573460:intron 40.0%
CATCATATTCAAACTGGCTG+TGG + chr4_1:76659976-76659995 Msa0573460:CDS 40.0%
TCCGTATCTGTCATAGTCTA+CGG + chr4_1:76660000-76660019 Msa0573460:CDS 40.0%
GCAGATATGTCATGTTTCCA+AGG + chr4_1:76660489-76660508 Msa0573460:intron 40.0%
CTGGGCAGAAAAATAATCCT+TGG - chr4_1:76660509-76660528 None:intergenic 40.0%
!! AGGATTATTTTTCTGCCCAG+AGG + chr4_1:76660509-76660528 Msa0573460:intron 40.0%
AACTCTTGTTGAAGTTCCAG+AGG - chr4_1:76660667-76660686 None:intergenic 40.0%
CAACAAGAGTTCTTGCAGTT+AGG + chr4_1:76660676-76660695 Msa0573460:CDS 40.0%
AGACTTGGCAGATCAAATAG+TGG + chr4_1:76660741-76660760 Msa0573460:CDS 40.0%
GCATGAATTATATCCTGTCC+AGG + chr4_1:76660858-76660877 Msa0573460:intron 40.0%
AATTATATCCTGTCCAGGCT+TGG + chr4_1:76660863-76660882 Msa0573460:intron 40.0%
TGTGATGTGTATGGGAGTAA+CGG + chr4_1:76660889-76660908 Msa0573460:CDS 40.0%
! CCAAGAAGGTGATTTGCATA+AGG - chr4_1:76661085-76661104 None:intergenic 40.0%
CCTTATGCAAATCACCTTCT+TGG + chr4_1:76661082-76661101 Msa0573460:CDS 40.0%
AATCACCTTCTTGGACTGAA+TGG + chr4_1:76661091-76661110 Msa0573460:CDS 40.0%
TTACATTTCTACGGCATGTG+TGG + chr4_1:76661223-76661242 Msa0573460:CDS 40.0%
CTTCCTGATAAAGTTGAGCA+AGG - chr4_1:76661351-76661370 None:intergenic 40.0%
CAACTTTATCAGGAAGTTCG+CGG + chr4_1:76661355-76661374 Msa0573460:intron 40.0%
CTAGCTTAGCACTAACCTTT+CGG - chr4_1:76661420-76661439 None:intergenic 40.0%
TCTTTCATCCTTCCCTTGTT+TGG + chr4_1:76661492-76661511 Msa0573460:intron 40.0%
CAATGTGAGTACACCAAACA+AGG - chr4_1:76661508-76661527 None:intergenic 40.0%
!!! TGTGTTTCTTTTTCAGCTGC+TGG + chr4_1:76661547-76661566 Msa0573460:intron 40.0%
!!! TGCCGTACGCTTATTTTTGT+TGG + chr4_1:76661743-76661762 Msa0573460:CDS 40.0%
!!! GCCGTACGCTTATTTTTGTT+GGG + chr4_1:76661744-76661763 Msa0573460:CDS 40.0%
CCCCAACAAAAATAAGCGTA+CGG - chr4_1:76661748-76661767 None:intergenic 40.0%
!!! CCGTACGCTTATTTTTGTTG+GGG + chr4_1:76661745-76661764 Msa0573460:CDS 40.0%
AAGATTTAGTGCCTTGGTTG+AGG + chr4_1:76661820-76661839 Msa0573460:CDS 40.0%
GGATATACATACCTCAACCA+AGG - chr4_1:76661834-76661853 None:intergenic 40.0%
CTTCTTACAACGGCATCTAT+GGG - chr4_1:76661984-76662003 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+TGG - chr4_1:76661985-76662004 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr4_1:76662023-76662042 Msa0573460:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr4_1:76662082-76662101 Msa0573460:intron 40.0%
GCATGTCTATAAAACTTGCG+AGG + chr4_1:76662221-76662240 Msa0573460:intron 40.0%
CCCATCAGAAAATACTCCAT+AGG - chr4_1:76662539-76662558 None:intergenic 40.0%
! GAGTATTTTCTGATGGGGTA+TGG + chr4_1:76662542-76662561 Msa0573460:CDS 40.0%
ATTAATAATGTAGGGAGGGG+AGG + chr4_1:76662878-76662897 Msa0573460:three_prime_UTR 40.0%
ATTAAGGGGTCAATGATTGC+TGG - chr4_1:76663037-76663056 None:intergenic 40.0%
AGAGAAAATTGTTGGGTGGG+TGG + chr4_1:76658749-76658768 Msa0573460:five_prime_UTR 45.0%
ATCATCAAGAGCGACATCCA+TGG + chr4_1:76658809-76658828 Msa0573460:exon 45.0%
GGTTGTCCAATAAAAGGGCA+AGG + chr4_1:76659764-76659783 Msa0573460:intron 45.0%
! ATGTGCCCTTGCCCTTTTAT+TGG - chr4_1:76659773-76659792 None:intergenic 45.0%
CCCGTAGACTATGACAGATA+CGG - chr4_1:76660004-76660023 None:intergenic 45.0%
CCGTATCTGTCATAGTCTAC+GGG + chr4_1:76660001-76660020 Msa0573460:CDS 45.0%
CGTATCTGTCATAGTCTACG+GGG + chr4_1:76660002-76660021 Msa0573460:CDS 45.0%
TCTGGATAAGTGATCAGAGC+TGG - chr4_1:76660039-76660058 None:intergenic 45.0%
AAGTGCATTACGACCCTGTT+TGG + chr4_1:76660075-76660094 Msa0573460:intron 45.0%
TTGATCTGCCAAGTCTTCAG+CGG - chr4_1:76660737-76660756 None:intergenic 45.0%
CTTGGCAGATCAAATAGTGG+AGG + chr4_1:76660744-76660763 Msa0573460:CDS 45.0%
!! CTTGGTGCTGTGATGTGTAT+GGG + chr4_1:76660881-76660900 Msa0573460:CDS 45.0%
GCTTGAACTATCTCTGACTC+TGG - chr4_1:76661394-76661413 None:intergenic 45.0%
GATAGTTCAAGCTTGCCGAA+AGG + chr4_1:76661402-76661421 Msa0573460:CDS 45.0%
TGAGTACACCAAACAAGGGA+AGG - chr4_1:76661503-76661522 None:intergenic 45.0%
! TTGTCTTGCTAACTTGCAGG+AGG + chr4_1:76661687-76661706 Msa0573460:intron 45.0%
AGGAGGCCTGATATTACAGA+AGG + chr4_1:76661704-76661723 Msa0573460:intron 45.0%
GATAGCCTCAGAATGGAATG+GGG - chr4_1:76661777-76661796 None:intergenic 45.0%
GGATAGCCTCAGAATGGAAT+GGG - chr4_1:76661778-76661797 None:intergenic 45.0%
TGGATAGCCTCAGAATGGAA+TGG - chr4_1:76661779-76661798 None:intergenic 45.0%
TCATGTGGATAGCCTCAGAA+TGG - chr4_1:76661784-76661803 None:intergenic 45.0%
TGATAGGAGATTTAGTGCCG+TGG + chr4_1:76661872-76661891 Msa0573460:intron 45.0%
CATGCTACATACCACAACCA+CGG - chr4_1:76661892-76661911 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr4_1:76662007-76662026 Msa0573460:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr4_1:76662017-76662036 Msa0573460:intron 45.0%
AAAGAGGTAGAGGAAGACCT+AGG + chr4_1:76662033-76662052 Msa0573460:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_1:76662163-76662182 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_1:76662164-76662183 None:intergenic 45.0%
GCTGTCCGATCTCAAATTAG+CGG + chr4_1:76662335-76662354 Msa0573460:intron 45.0%
! GTAATGTTGTTTGCAGGTCC+AGG + chr4_1:76662466-76662485 Msa0573460:intron 45.0%
TTGTGGATCAATGGTGACAG+AGG + chr4_1:76662490-76662509 Msa0573460:CDS 45.0%
ATAGGTATCAGCATCGCATG+CGG - chr4_1:76662521-76662540 None:intergenic 45.0%
! TGATGGGGTATGGGTTGTAT+AGG + chr4_1:76662552-76662571 Msa0573460:CDS 45.0%
!! AGATGCAAGATGGGCTAAGT+GGG - chr4_1:76662607-76662626 None:intergenic 45.0%
! CTTCTTTCTCCGGAAAGCAT+GGG + chr4_1:76662635-76662654 Msa0573460:CDS 45.0%
! TTCTTTCTCCGGAAAGCATG+GGG + chr4_1:76662636-76662655 Msa0573460:CDS 45.0%
AGCGAAACACGCGTCTTTAT+GGG - chr4_1:76662674-76662693 None:intergenic 45.0%
! AGAGGTATGGTAGAGTTTGG+AGG + chr4_1:76662811-76662830 Msa0573460:three_prime_UTR 45.0%
GAGGTATGGTAGAGTTTGGA+GGG + chr4_1:76662812-76662831 Msa0573460:three_prime_UTR 45.0%
AGGTATGGTAGAGTTTGGAG+GGG + chr4_1:76662813-76662832 Msa0573460:three_prime_UTR 45.0%
! TTGGAGGGGGTGTAGATAAA+AGG + chr4_1:76662827-76662846 Msa0573460:three_prime_UTR 45.0%
! TGGAGGGGGTGTAGATAAAA+GGG + chr4_1:76662828-76662847 Msa0573460:three_prime_UTR 45.0%
TGTCATAGTCTACGGGGATC+AGG + chr4_1:76660008-76660027 Msa0573460:CDS 50.0%
TTACAAACCTCGTGTCCAGG+AGG - chr4_1:76660579-76660598 None:intergenic 50.0%
GACTTACAAACCTCGTGTCC+AGG - chr4_1:76660582-76660601 None:intergenic 50.0%
!! GCTTGGTGCTGTGATGTGTA+TGG + chr4_1:76660880-76660899 Msa0573460:CDS 50.0%
ATGTGTATGGGAGTAACGGC+TGG + chr4_1:76660893-76660912 Msa0573460:CDS 50.0%
ACTTCAGCGGTACTTCAGCA+AGG + chr4_1:76661264-76661283 Msa0573460:CDS 50.0%
!! CAGCAAGGTATTGTACCGTG+AGG + chr4_1:76661279-76661298 Msa0573460:intron 50.0%
CGACAGAGCTACAATCCTCA+CGG - chr4_1:76661297-76661316 None:intergenic 50.0%
CAGTTCCCCATTCCATTCTG+AGG + chr4_1:76661769-76661788 Msa0573460:CDS 50.0%
GAGATTTAGTGCCGTGGTTG+TGG + chr4_1:76661878-76661897 Msa0573460:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_1:76662159-76662178 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_1:76662165-76662184 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_1:76662162-76662181 Msa0573460:intron 50.0%
GTCCGATCTCAAATTAGCGG+CGG + chr4_1:76662338-76662357 Msa0573460:intron 50.0%
! CTCCGCCGCTAATTTGAGAT+CGG - chr4_1:76662343-76662362 None:intergenic 50.0%
TCACCATTGATCCACAAGCC+TGG - chr4_1:76662487-76662506 None:intergenic 50.0%
GCATGCGATGCTGATACCTA+TGG + chr4_1:76662520-76662539 Msa0573460:CDS 50.0%
!! GAGATGCAAGATGGGCTAAG+TGG - chr4_1:76662608-76662627 None:intergenic 50.0%
TTTCCGGAGAAAGAAGCTCC+GGG - chr4_1:76662631-76662650 None:intergenic 50.0%
CTTTCCGGAGAAAGAAGCTC+CGG - chr4_1:76662632-76662651 None:intergenic 50.0%
GCTTCTTTCTCCGGAAAGCA+TGG + chr4_1:76662634-76662653 Msa0573460:CDS 50.0%
AGCTTCAACCCCATGCTTTC+CGG - chr4_1:76662647-76662666 None:intergenic 50.0%
CAGCGAAACACGCGTCTTTA+TGG - chr4_1:76662675-76662694 None:intergenic 50.0%
CATAAAGACGCGTGTTTCGC+TGG + chr4_1:76662673-76662692 Msa0573460:CDS 50.0%
GGTATGGTAGAGTTTGGAGG+GGG + chr4_1:76662814-76662833 Msa0573460:three_prime_UTR 50.0%
GCAGCAAAGAAGCAGCCTCT+GGG - chr4_1:76660527-76660546 None:intergenic 55.0%
AGCAGCAAAGAAGCAGCCTC+TGG - chr4_1:76660528-76660547 None:intergenic 55.0%
TATCAGTCCTCCTGGACACG+AGG + chr4_1:76660569-76660588 Msa0573460:intron 55.0%
TGCCAAGTCTTCAGCGGAAG+GGG - chr4_1:76660731-76660750 None:intergenic 55.0%
CTGCCAAGTCTTCAGCGGAA+GGG - chr4_1:76660732-76660751 None:intergenic 55.0%
TCTGCCAAGTCTTCAGCGGA+AGG - chr4_1:76660733-76660752 None:intergenic 55.0%
ACACATCACAGCACCAAGCC+TGG - chr4_1:76660879-76660898 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_1:76662151-76662170 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_1:76662150-76662169 Msa0573460:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_1:76662151-76662170 Msa0573460:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_1:76662157-76662176 Msa0573460:intron 55.0%
TGTTTGCAGGTCCAGGCTTG+TGG + chr4_1:76662473-76662492 Msa0573460:intron 55.0%
GGTCCAGGCTTGTGGATCAA+TGG + chr4_1:76662481-76662500 Msa0573460:intron 55.0%
GGGCTGTGACTGAACTTGCA+TGG - chr4_1:76662578-76662597 None:intergenic 55.0%
GCAAGTTCAGTCACAGCCCA+AGG + chr4_1:76662579-76662598 Msa0573460:CDS 55.0%
! ATGGGCTAAGTGGGCTCCTT+GGG - chr4_1:76662598-76662617 None:intergenic 55.0%
TAGCCCATCTTGCATCTCCC+CGG + chr4_1:76662610-76662629 Msa0573460:CDS 55.0%
TTCCGGAGAAAGAAGCTCCG+GGG - chr4_1:76662630-76662649 None:intergenic 55.0%
TAATGTAGGGAGGGGAGGAG+AGG + chr4_1:76662883-76662902 Msa0573460:three_prime_UTR 55.0%
TGCCCCTTCCGCTGAAGACT+TGG + chr4_1:76660726-76660745 Msa0573460:CDS 60.0%
TCACAGCACCAAGCCTGGAC+AGG - chr4_1:76660874-76660893 None:intergenic 60.0%
!! GATGGGCTAAGTGGGCTCCT+TGG - chr4_1:76662599-76662618 None:intergenic 60.0%
GCTCCGGGGAGATGCAAGAT+GGG - chr4_1:76662616-76662635 None:intergenic 60.0%
AGCTCCGGGGAGATGCAAGA+TGG - chr4_1:76662617-76662636 None:intergenic 60.0%
CTCCCCGGAGCTTCTTTCTC+CGG + chr4_1:76662625-76662644 Msa0573460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 76658540 76663066 76658540 ID=Msa0573460;Name=Msa0573460
chr4_1 mRNA 76658540 76663066 76658540 ID=Msa0573460-mRNA-1;Parent=Msa0573460;Name=Msa0573460-mRNA-1;_AED=0.25;_eAED=0.25;_QI=288|0.88|0.9|1|1|1|10|363|326
chr4_1 exon 76658540 76658887 76658540 ID=Msa0573460-mRNA-1:exon:26826;Parent=Msa0573460-mRNA-1
chr4_1 exon 76659973 76660072 76659973 ID=Msa0573460-mRNA-1:exon:26827;Parent=Msa0573460-mRNA-1
chr4_1 exon 76660659 76660782 76660659 ID=Msa0573460-mRNA-1:exon:26828;Parent=Msa0573460-mRNA-1
chr4_1 exon 76660880 76660940 76660880 ID=Msa0573460-mRNA-1:exon:26829;Parent=Msa0573460-mRNA-1
chr4_1 exon 76661039 76661125 76661039 ID=Msa0573460-mRNA-1:exon:26830;Parent=Msa0573460-mRNA-1
chr4_1 exon 76661208 76661285 76661208 ID=Msa0573460-mRNA-1:exon:26831;Parent=Msa0573460-mRNA-1
chr4_1 exon 76661367 76661423 76661367 ID=Msa0573460-mRNA-1:exon:26832;Parent=Msa0573460-mRNA-1
chr4_1 exon 76661563 76661618 76661563 ID=Msa0573460-mRNA-1:exon:26833;Parent=Msa0573460-mRNA-1
chr4_1 exon 76661706 76661841 76661706 ID=Msa0573460-mRNA-1:exon:26834;Parent=Msa0573460-mRNA-1
chr4_1 exon 76662482 76663066 76662482 ID=Msa0573460-mRNA-1:exon:26835;Parent=Msa0573460-mRNA-1
chr4_1 five_prime_UTR 76658540 76658827 76658540 ID=Msa0573460-mRNA-1:five_prime_utr;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76658828 76658887 76658828 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76659973 76660072 76659973 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76660659 76660782 76660659 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76660880 76660940 76660880 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76661039 76661125 76661039 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76661208 76661285 76661208 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76661367 76661423 76661367 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76661563 76661618 76661563 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76661706 76661841 76661706 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 CDS 76662482 76662703 76662482 ID=Msa0573460-mRNA-1:cds;Parent=Msa0573460-mRNA-1
chr4_1 three_prime_UTR 76662704 76663066 76662704 ID=Msa0573460-mRNA-1:three_prime_utr;Parent=Msa0573460-mRNA-1
Gene Sequence

>Msa0573460

ATGGCAGAATCAAATGATTCCGTTTCAGTTGATATGGAAAAGATCTTTCTTGGTGGAAAGGAGCATCATATTCAAACTGGCTGTGGTTCCGTATCTGTCATAGTCTACGGGGATCAGGACAAACCAGCTCTGATCACTTATCCAGATTTAGCGCTAAATTTTTCTCCTCTGGAACTTCAACAAGAGTTCTTGCAGTTAGGAGCTGCTGCGATTTGTTCTGATAATCATGCCCCTTCCGCTGAAGACTTGGCAGATCAAATAGTGGAGGTTCTCAACTATTTTAGGCTTGGTGCTGTGATGTGTATGGGAGTAACGGCTGGTGCTTATATCCTTACTCTTTTTGCAATGAAATATAGGAATCGCGTTGTTGGATTAATACTTGTATCTCCCTTATGCAAATCACCTTCTTGGACTGAATGGTTTTATAACAAGGTGATGTCAAATTTGTTACATTTCTACGGCATGTGTGGTTTGCTAAAAGAGTGTTTACTTCAGCGGTACTTCAGCAAGGAAGTTCGCGGTAATGTTGAAGTTCCAGAGTCAGAGATAGTTCAAGCTTGCCGAAAGCTGCTGGACGAGAGAAAGAAAACAAATGTCTTGCGGTTTCTTCAAGCAATTGATCAGAGGCCTGATATTACAGAAGGATTAGAAAAATTAAACTGCCGTACGCTTATTTTTGTTGGGGACAGTTCCCCATTCCATTCTGAGGCTATCCACATGACTTCGAAACTTGATAGAAGATTTAGTGCCTTGGTTGAGGTCCAGGCTTGTGGATCAATGGTGACAGAGGAACAACCGCATGCGATGCTGATACCTATGGAGTATTTTCTGATGGGGTATGGGTTGTATAGGCCATGCAAGTTCAGTCACAGCCCAAGGAGCCCACTTAGCCCATCTTGCATCTCCCCGGAGCTTCTTTCTCCGGAAAGCATGGGGTTGAAGCTAAAGCCCATAAAGACGCGTGTTTCGCTGGAAGTTTGA
Protein sequence

>Msa0573460

MAESNDSVSVDMEKIFLGGKEHHIQTGCGSVSVIVYGDQDKPALITYPDLALNFSPLELQQEFLQLGAAAICSDNHAPSAEDLADQIVEVLNYFRLGAVMCMGVTAGAYILTLFAMKYRNRVVGLILVSPLCKSPSWTEWFYNKVMSNLLHFYGMCGLLKECLLQRYFSKEVRGNVEVPESEIVQACRKLLDERKKTNVLRFLQAIDQRPDITEGLEKLNCRTLIFVGDSSPFHSEAIHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPCKFSHSPRSPLSPSCISPELLSPESMGLKLKPIKTRVSLEV*