AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457860 MtrunA17_Chr8g0389281 84.358 358 37 3 1 350 1 347 0.0 596
Msa1457860 MtrunA17_Chr1g0151691 64.620 342 94 3 21 350 2 328 1.37e-151 429
Msa1457860 MtrunA17_Chr1g0190891 53.388 369 138 4 1 350 1 354 6.48e-131 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457860 AT5G56750.1 67.042 355 98 3 1 347 1 344 1.79e-169 476
Msa1457860 AT5G56750.2 67.761 335 89 3 21 347 2 325 8.54e-161 453
Msa1457860 AT5G11790.1 63.712 361 101 6 1 348 1 344 9.32e-155 438
Msa1457860 AT2G19620.1 61.838 359 108 6 1 346 1 343 2.00e-154 437
Msa1457860 AT2G19620.2 62.537 339 98 6 21 346 2 324 1.43e-147 419
Msa1457860 AT2G19620.3 70.182 275 77 2 72 346 20 289 2.65e-144 410
Msa1457860 AT5G11790.2 72.563 277 70 2 72 348 20 290 8.03e-144 409

Find 114 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGAAACACGCGTCTTTA+TGG 0.099306 tig0039250:+2006 None:intergenic
ATTCATATTCATAATATTTA+TGG 0.105530 tig0039250:-1670 Msa1457860:three_prime_UTR
CCTTATGCAAAGCACCTTCT+TGG 0.232192 tig0039250:-3617 Msa1457860:CDS
AGCTTCAACCCCATGCTTTC+CGG 0.245987 tig0039250:+2034 None:intergenic
TGATTCCGTTTCAGTTGATA+TGG 0.277119 tig0039250:-5843 Msa1457860:CDS
TCTAATCCTTCTGTAATATC+AGG 0.279231 tig0039250:+2965 None:intergenic
GATATGGAAAAGATCTTTCT+TGG 0.298817 tig0039250:-5827 Msa1457860:CDS
TTTAGTGCGGTCTTGAATAA+AGG 0.300865 tig0039250:-1740 Msa1457860:three_prime_UTR
AGCGAAACACGCGTCTTTAT+GGG 0.326221 tig0039250:+2007 None:intergenic
AAAAGAGGTATGGTAGAGTT+TGG 0.331848 tig0039250:-1870 Msa1457860:three_prime_UTR
ATGGGCTAAGTGGGCTCCTT+GGG 0.341176 tig0039250:+2083 None:intergenic
TGATGGGGTATGGGTTGTAT+AGG 0.367144 tig0039250:-2126 Msa1457860:CDS
GATGGGCTAAGTGGGCTCCT+TGG 0.387609 tig0039250:+2082 None:intergenic
CAACAAGAGTTCTTGCAGTT+AGG 0.388719 tig0039250:-4023 Msa1457860:CDS
AAGAAGAGAGAGAAAATTGT+TGG 0.392374 tig0039250:-5944 Msa1457860:five_prime_UTR
TATTTATCTGTAAATCCAAT+TGG 0.398532 tig0039250:-1704 Msa1457860:three_prime_UTR
TTCTTTGAAGTTCTTCAGAA+AGG 0.400309 tig0039250:-5905 Msa1457860:five_prime_UTR
CAGGAGCATCATATTCAAAC+TGG 0.411787 tig0039250:-4729 Msa1457860:CDS
ATTAAGGGGTCAATGATTGC+TGG 0.415224 tig0039250:+1644 None:intergenic
TGTGTTGTTGTTTATGTGTC+AGG 0.418622 tig0039250:+5982 None:intergenic
GCTTGGTGCTGTGATGTGTA+TGG 0.420350 tig0039250:-3819 Msa1457860:CDS
CCAAGAAGGTGCTTTGCATA+AGG 0.422664 tig0039250:+3617 None:intergenic
GAGATATATATTAATAATGT+AGG 0.428351 tig0039250:-1809 Msa1457860:three_prime_UTR
AAGCACCTTCTTGGACTGAA+TGG 0.428934 tig0039250:-3608 Msa1457860:CDS
CATAAAGACGCGTGTTTCGC+TGG 0.429083 tig0039250:-2005 Msa1457860:CDS
TCTTTGAAGTTCTTCAGAAA+GGG 0.429525 tig0039250:-5904 Msa1457860:five_prime_UTR
CTTCTTTCTCCGGAAAGCAT+GGG 0.432890 tig0039250:-2043 Msa1457860:CDS
ACTATGTAAATAATAATATT+CGG 0.434338 tig0039250:+4062 None:intergenic
CTCCCCGGAGCTTCTTTCTC+CGG 0.435564 tig0039250:-2053 Msa1457860:CDS
GAATATAGCTAGAGTCCAAT+TGG 0.436757 tig0039250:+1689 None:intergenic
AGCAGCAAAGAAGCAGCCTC+TGG 0.437665 tig0039250:+4174 None:intergenic
TGAAGAACTTCAAAGAAAGA+AGG 0.444254 tig0039250:+5911 None:intergenic
AAATATAGGAATCGCGTTGT+TGG 0.444613 tig0039250:-3657 Msa1457860:CDS
TCAAATTTGTTACATTTCTA+CGG 0.444894 tig0039250:-3485 Msa1457860:CDS
TGCCCCTTCCGCTGAAGACT+TGG 0.450271 tig0039250:-3973 Msa1457860:CDS
TATTTACATAGTTTCTCCTC+TGG 0.455521 tig0039250:-4051 Msa1457860:CDS
CAAGAAGGTGCTTTGCATAA+GGG 0.465836 tig0039250:+3618 None:intergenic
GCTTCTTTCTCCGGAAAGCA+TGG 0.467061 tig0039250:-2044 Msa1457860:CDS
GGATAGCCTCAGAATGGAAT+GGG 0.467778 tig0039250:+2900 None:intergenic
AAGAAGAAGAGAAAGAAAAG+AGG 0.481042 tig0039250:-6029 Msa1457860:five_prime_UTR
AAGATTTAGTGCCTTGGTTG+AGG 0.482830 tig0039250:-2855 Msa1457860:intron
CAGAGATAGAGAAAGAAAAG+AGG 0.485980 tig0039250:-1885 Msa1457860:three_prime_UTR
AGAGGTATGGTAGAGTTTGG+AGG 0.485998 tig0039250:-1867 Msa1457860:three_prime_UTR
AGAGAAAATTGTTGGGTGGG+TGG 0.487770 tig0039250:-5936 Msa1457860:five_prime_UTR
GACTTACAAACCTCGTGTCC+AGG 0.494595 tig0039250:+4120 None:intergenic
TGATAGAAGATTTAGTGCCT+TGG 0.501311 tig0039250:-2861 Msa1457860:CDS
TGCCAAGTCTTCAGCGGAAG+GGG 0.501435 tig0039250:+3971 None:intergenic
CTTTCCGGAGAAAGAAGCTC+CGG 0.501653 tig0039250:+2049 None:intergenic
GAGGTATGGTAGAGTTTGGA+GGG 0.510380 tig0039250:-1866 Msa1457860:three_prime_UTR
GAGAGAGAAAATTGTTGGGT+GGG 0.512997 tig0039250:-5939 Msa1457860:five_prime_UTR
ATAGAGAAAGAAAAGAGGTA+TGG 0.513983 tig0039250:-1880 Msa1457860:three_prime_UTR
GCTTGAACTATCTCTGACTC+TGG 0.514137 tig0039250:+3308 None:intergenic
CTTTGAAGTTCTTCAGAAAG+GGG 0.516116 tig0039250:-5903 Msa1457860:five_prime_UTR
ATTAATAATGTAGGGAGGAG+AGG 0.517515 tig0039250:-1800 Msa1457860:three_prime_UTR
TGTTTGCAGGTCCAGGCTTG+TGG 0.517552 tig0039250:-2205 Msa1457860:intron
AAAGATCTTTCTTGGTGGAA+AGG 0.519204 tig0039250:-5819 Msa1457860:intron
GGGCTGTGACTGAACTTGCA+TGG 0.530749 tig0039250:+2103 None:intergenic
AAAGAATCGAATTGTGACAT+TGG 0.535573 tig0039250:-6086 Msa1457860:five_prime_UTR
ATGGAAAAGATCTTTCTTGG+TGG 0.538424 tig0039250:-5824 Msa1457860:CDS
AGATGCAAGATGGGCTAAGT+GGG 0.538699 tig0039250:+2074 None:intergenic
AGCTCCGGGGAGATGCAAGA+TGG 0.541313 tig0039250:+2064 None:intergenic
CTTGGTGCTGTGATGTGTAT+GGG 0.542761 tig0039250:-3818 Msa1457860:CDS
TCACCATTGATCCACAAGCC+TGG 0.543442 tig0039250:+2194 None:intergenic
ATATATCATATCAGTCCTCC+TGG 0.544551 tig0039250:-4138 Msa1457860:CDS
GCATGCGATGCTGATACCTA+TGG 0.544656 tig0039250:-2158 Msa1457860:CDS
GGTCCAGGCTTGTGGATCAA+TGG 0.547337 tig0039250:-2197 Msa1457860:CDS
CAACTTTATCAGGAAGTTCG+CGG 0.549393 tig0039250:-3344 Msa1457860:intron
TGGATAGCCTCAGAATGGAA+TGG 0.551882 tig0039250:+2899 None:intergenic
TTCTTTCTCCGGAAAGCATG+GGG 0.553544 tig0039250:-2042 Msa1457860:CDS
TAGCCCATCTTGCATCTCCC+CGG 0.558551 tig0039250:-2068 Msa1457860:CDS
CATCATATTCAAACTGGCTG+TGG 0.559367 tig0039250:-4723 Msa1457860:CDS
GCAGATATGTCATGTTTCCA+AGG 0.559903 tig0039250:-4210 Msa1457860:intron
AGATATATATTAATAATGTA+GGG 0.561752 tig0039250:-1808 Msa1457860:three_prime_UTR
GCTCCGGGGAGATGCAAGAT+GGG 0.562541 tig0039250:+2065 None:intergenic
GCAGCAAAGAAGCAGCCTCT+GGG 0.566376 tig0039250:+4175 None:intergenic
AGAAGAGAGAGAAAATTGTT+GGG 0.568050 tig0039250:-5943 Msa1457860:five_prime_UTR
TAATGTAGGGAGGAGAGGAG+AGG 0.573183 tig0039250:-1795 Msa1457860:three_prime_UTR
GAGATGCAAGATGGGCTAAG+TGG 0.573247 tig0039250:+2073 None:intergenic
TTTCCGGAGAAAGAAGCTCC+GGG 0.574094 tig0039250:+2050 None:intergenic
CAGTTCCCCATTCCATTCTG+AGG 0.577238 tig0039250:-2906 Msa1457860:CDS
GGAATCATTTGATTCTGCCA+TGG 0.577286 tig0039250:+5859 None:intergenic
TCATGTGGATAGCCTCAGAA+TGG 0.577878 tig0039250:+2894 None:intergenic
AGAGAGAGAAAATTGTTGGG+TGG 0.580911 tig0039250:-5940 Msa1457860:five_prime_UTR
GAAAGAAAACAAATGTCTTG+CGG 0.581540 tig0039250:-3122 Msa1457860:CDS
CTGCCAAGTCTTCAGCGGAA+GGG 0.583824 tig0039250:+3970 None:intergenic
TAAAAGAGTGTTTACTTCAG+CGG 0.584282 tig0039250:-3448 Msa1457860:CDS
GCAAGTTCAGTCACAGCCCA+AGG 0.585749 tig0039250:-2099 Msa1457860:CDS
TTACATTTCTACGGCATGTG+TGG 0.586202 tig0039250:-3476 Msa1457860:CDS
AGACTTGGCAGATCAAATAG+TGG 0.587192 tig0039250:-3958 Msa1457860:CDS
AACTCTTGTTGAAGTTCCAG+AGG 0.590898 tig0039250:+4035 None:intergenic
CCCGTAGACTATGACAGATA+CGG 0.591367 tig0039250:+4698 None:intergenic
TATCAAGTTTCGAAGTCATG+TGG 0.597724 tig0039250:+2879 None:intergenic
TAAAACCATTCAGTCCAAGA+AGG 0.602523 tig0039250:+3603 None:intergenic
TCTGCCAAGTCTTCAGCGGA+AGG 0.604002 tig0039250:+3969 None:intergenic
AGGAGGCCTGATATTACAGA+AGG 0.604098 tig0039250:-2971 Msa1457860:CDS
ATGTGTATGGGAGTAACGGC+TGG 0.609518 tig0039250:-3806 Msa1457860:CDS
GGTATGGTAGAGTTTGGAGG+GGG 0.612771 tig0039250:-1864 Msa1457860:three_prime_UTR
TGTCGGTGGTTGTTAACCGT+AGG 0.623522 tig0039250:-6157 None:intergenic
ACTTCAGCGGTACTTCAGCA+AGG 0.629263 tig0039250:-3435 Msa1457860:intron
TTGATCTGCCAAGTCTTCAG+CGG 0.631136 tig0039250:+3965 None:intergenic
ATCATCAAGAGCGACATCCA+TGG 0.635085 tig0039250:-5876 Msa1457860:exon
TGTGATGTGTATGGGAGTAA+CGG 0.638338 tig0039250:-3810 Msa1457860:CDS
GATAGTTCAAGCTTGCCGAA+AGG 0.640690 tig0039250:-3297 Msa1457860:intron
TATATATTAATAATGTAGGG+AGG 0.643617 tig0039250:-1805 Msa1457860:three_prime_UTR
TTGTGGATCAATGGTGACAG+AGG 0.643977 tig0039250:-2188 Msa1457860:CDS
TATCAGTCCTCCTGGACACG+AGG 0.645279 tig0039250:-4130 Msa1457860:CDS
CCCATCAGAAAATACTCCAT+AGG 0.649901 tig0039250:+2142 None:intergenic
AGGTATGGTAGAGTTTGGAG+GGG 0.662668 tig0039250:-1865 Msa1457860:three_prime_UTR
CTTGGCAGATCAAATAGTGG+AGG 0.676605 tig0039250:-3955 Msa1457860:CDS
TTACAAACCTCGTGTCCAGG+AGG 0.698406 tig0039250:+4123 None:intergenic
ATAGGTATCAGCATCGCATG+CGG 0.699214 tig0039250:+2160 None:intergenic
GATAGCCTCAGAATGGAATG+GGG 0.713909 tig0039250:+2901 None:intergenic
GGATATACATACCTCAACCA+AGG 0.717535 tig0039250:+2844 None:intergenic
TTCCGGAGAAAGAAGCTCCG+GGG 0.722655 tig0039250:+2051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATAATTTTTTTTAA+TGG - tig0039250:1979-1998 Msa1457860:exon 10.0%
!!! AAGGTATAATTTTTTTTAAT+GGG - tig0039250:1980-1999 Msa1457860:exon 10.0%
!! ACTATGTAAATAATAATATT+CGG + tig0039250:3721-3740 None:intergenic 10.0%
!! AGATATATATTAATAATGTA+GGG - tig0039250:5972-5991 Msa1457860:five_prime_UTR 10.0%
!! ATTCATATTCATAATATTTA+TGG - tig0039250:6110-6129 Msa1457860:five_prime_UTR 10.0%
!!! ATAATTTTTTTTAATGGGTT+TGG - tig0039250:1985-2004 Msa1457860:exon 15.0%
!!! TAATTTTTTTTAATGGGTTT+GGG - tig0039250:1986-2005 Msa1457860:exon 15.0%
!!! TTTGTTATTTTGAAGAATAA+TGG - tig0039250:2034-2053 Msa1457860:CDS 15.0%
!!! TTGTTATTTTGAAGAATAAT+GGG - tig0039250:2035-2054 Msa1457860:CDS 15.0%
!!! AATGGGTTTTTTTTTTTTTT+TGG - tig0039250:2052-2071 Msa1457860:CDS 15.0%
!!! ATGGGTTTTTTTTTTTTTTT+GGG - tig0039250:2053-2072 Msa1457860:CDS 15.0%
!!! TTTTTTTTTTTTGGGTTTAA+AGG - tig0039250:2061-2080 Msa1457860:CDS 15.0%
!!! ATTTTGTATGTTTTTTTGAA+CGG - tig0039250:2087-2106 Msa1457860:CDS 15.0%
!!! TTTTTCTTCTTTCAATAATT+AGG - tig0039250:2123-2142 Msa1457860:CDS 15.0%
!!! TTTTTAAGTGATTAATGATT+TGG - tig0039250:2146-2165 Msa1457860:CDS 15.0%
!!! CTTTTACTTTATGTTTATTT+GGG - tig0039250:2633-2652 Msa1457860:intron 15.0%
!!! TTTTACTTTATGTTTATTTG+GGG - tig0039250:2634-2653 Msa1457860:intron 15.0%
!!! TTGATTTACTGATTAAAATT+TGG + tig0039250:4752-4771 None:intergenic 15.0%
!! TGAAGAAAAAAATAAAAAAG+TGG + tig0039250:5853-5872 None:intergenic 15.0%
!! GAGATATATATTAATAATGT+AGG - tig0039250:5971-5990 Msa1457860:five_prime_UTR 15.0%
!!! TTTTTGTTTTTCCAGAATAA+TGG - tig0039250:2009-2028 Msa1457860:CDS 20.0%
!!! TTTTGTTTTTCCAGAATAAT+GGG - tig0039250:2010-2029 Msa1457860:CDS 20.0%
!!! TTTTGTATGTTTTTTTGAAC+GGG - tig0039250:2088-2107 Msa1457860:CDS 20.0%
!!! GATTATCTTATTTATGAATG+TGG - tig0039250:2256-2275 Msa1457860:intron 20.0%
!!! TATCAATTGTTTAAAGTCAA+TGG - tig0039250:2282-2301 Msa1457860:intron 20.0%
!!! ATCAATTGTTTAAAGTCAAT+GGG - tig0039250:2283-2302 Msa1457860:intron 20.0%
!!! AACAAAAAACGTTTTTTACT+TGG - tig0039250:2326-2345 Msa1457860:intron 20.0%
!! TTCAAAGAAAGAAAACAAAA+AGG + tig0039250:2405-2424 None:intergenic 20.0%
!!! ATTTTCTCATGTTATGAATT+TGG - tig0039250:2437-2456 Msa1457860:intron 20.0%
!!! TTTTCTCATGTTATGAATTT+GGG - tig0039250:2438-2457 Msa1457860:intron 20.0%
!! CCAAATAAACATAAAGTAAA+AGG + tig0039250:2635-2654 None:intergenic 20.0%
!!! CCTTTTACTTTATGTTTATT+TGG - tig0039250:2632-2651 Msa1457860:intron 20.0%
!!! ATGTATGTAAATACTTTTGT+TGG - tig0039250:2659-2678 Msa1457860:intron 20.0%
!! ATAAGGTTAAAATTCCTAAA+TGG + tig0039250:2904-2923 None:intergenic 20.0%
!! TATTTCCAGAGTAAATTAAA+AGG + tig0039250:3521-3540 None:intergenic 20.0%
!!! TGTTTTTACAGATGAAATAT+AGG - tig0039250:4109-4128 Msa1457860:intron 20.0%
!! TGTATCAAAGAATTCATAAA+AGG + tig0039250:4236-4255 None:intergenic 20.0%
!! TACAAATTATTAATCGTTTC+AGG + tig0039250:4268-4287 None:intergenic 20.0%
!!! TGAAACGATTAATAATTTGT+AGG - tig0039250:4267-4286 Msa1457860:intron 20.0%
!!! TCAAATTTGTTACATTTCTA+CGG - tig0039250:4295-4314 Msa1457860:intron 20.0%
!! TCAACTTATGAAATAAAAGA+GGG + tig0039250:4405-4424 None:intergenic 20.0%
!! TTCAACTTATGAAATAAAAG+AGG + tig0039250:4406-4425 None:intergenic 20.0%
!! TATATATTAATAATGTAGGG+AGG - tig0039250:5975-5994 Msa1457860:five_prime_UTR 20.0%
!! TATTTATCTGTAAATCCAAT+TGG - tig0039250:6076-6095 Msa1457860:five_prime_UTR 20.0%
!!! CTTCGTTTTTTTTTAACCTA+CGG + tig0039250:1642-1661 None:intergenic 25.0%
!!! TTCTTCTTGTATGGTTTTAA+TGG + tig0039250:1733-1752 None:intergenic 25.0%
!! TTTTCTCTCTCTTCTTTTAT+GGG + tig0039250:1832-1851 None:intergenic 25.0%
!! ATTTTCTCTCTCTTCTTTTA+TGG + tig0039250:1833-1852 None:intergenic 25.0%
! AATAACAAAACCCATTATTC+TGG + tig0039250:2023-2042 None:intergenic 25.0%
!!! TTTGTATGTTTTTTTGAACG+GGG - tig0039250:2089-2108 Msa1457860:CDS 25.0%
! ACTCTTGTGAAAAATTAATG+AGG - tig0039250:2357-2376 Msa1457860:intron 25.0%
! ACAAAAAGGATTACAGAAAA+AGG + tig0039250:2391-2410 None:intergenic 25.0%
!! GCATTTGTGAATTTTACATT+TGG - tig0039250:2502-2521 Msa1457860:intron 25.0%
!! TTTGTGAATTTTACATTTGG+TGG - tig0039250:2505-2524 Msa1457860:intron 25.0%
! TGTCTTCAATTATTAGAATC+TGG - tig0039250:2760-2779 Msa1457860:intron 25.0%
! CATTTAGAAAACAAATAGCT+TGG - tig0039250:2871-2890 Msa1457860:CDS 25.0%
!!! GAATTTTAACCTTATCCAAA+TGG - tig0039250:2909-2928 Msa1457860:CDS 25.0%
!!! ATATTCTTTGCTTTTGATGA+AGG - tig0039250:2951-2970 Msa1457860:CDS 25.0%
!! TGCTATGTTGATTATGATTA+TGG - tig0039250:3017-3036 Msa1457860:intron 25.0%
!!! TTAAGCTATTTTTCCAAACA+GGG + tig0039250:3172-3191 None:intergenic 25.0%
!!! ATTAAGCTATTTTTCCAAAC+AGG + tig0039250:3173-3192 None:intergenic 25.0%
! AATCAGCTGTAAACAATTTA+TGG - tig0039250:3332-3351 Msa1457860:CDS 25.0%
!!! ATTGTCCTTTTAATTTACTC+TGG - tig0039250:3513-3532 Msa1457860:intron 25.0%
! TGAGTTAATATTTACTTGCA+TGG - tig0039250:3541-3560 Msa1457860:intron 25.0%
!! ATATTTACTTGCATGGATTA+TGG - tig0039250:3548-3567 Msa1457860:intron 25.0%
!!! TATGTACCCTTTTAATTTGA+CGG - tig0039250:4023-4042 Msa1457860:CDS 25.0%
! TTCTTTCCGTCAAATTAAAA+GGG + tig0039250:4032-4051 None:intergenic 25.0%
! TTTCTTTCCGTCAAATTAAA+AGG + tig0039250:4033-4052 None:intergenic 25.0%
! TTTGACGGAAAGAAAATATT+AGG - tig0039250:4038-4057 Msa1457860:CDS 25.0%
!! TTACTGATTAAAATTTGGTC+AGG + tig0039250:4747-4766 None:intergenic 25.0%
! CTTCTTACAACATTATCTAT+GGG + tig0039250:5089-5108 None:intergenic 25.0%
! TCTTCTTACAACATTATCTA+TGG + tig0039250:5090-5109 None:intergenic 25.0%
! TATTAGAGAAACCATTAGAA+AGG - tig0039250:5166-5185 Msa1457860:intron 25.0%
! GTTCTATCATAAACCATATT+TGG + tig0039250:5215-5234 None:intergenic 25.0%
! ATTTAGAGATAGAAAACTGT+GGG + tig0039250:5370-5389 None:intergenic 25.0%
! TCTAAATCAATGATAGCAAT+TGG - tig0039250:5383-5402 Msa1457860:intron 25.0%
! ATGAATGTTTATCTTATAGC+AGG - tig0039250:5481-5500 Msa1457860:intron 25.0%
! TGAATGTTTATCTTATAGCA+GGG - tig0039250:5482-5501 Msa1457860:intron 25.0%
! AACTAACTATAGAAATCATG+CGG + tig0039250:5517-5536 None:intergenic 25.0%
! ACGATGAACATATAATAACT+TGG - tig0039250:5546-5565 Msa1457860:intron 25.0%
!!! ACTTTGATTCATTTTTAGTG+CGG - tig0039250:6027-6046 Msa1457860:five_prime_UTR 25.0%
AAAGAATCGAATTGTGACAT+TGG - tig0039250:1694-1713 Msa1457860:three_prime_UTR 30.0%
AAGAAGAAGAGAAAGAAAAG+AGG - tig0039250:1751-1770 Msa1457860:three_prime_UTR 30.0%
AAGAAGAGAGAGAAAATTGT+TGG - tig0039250:1836-1855 Msa1457860:three_prime_UTR 30.0%
AGAAGAGAGAGAAAATTGTT+GGG - tig0039250:1837-1856 Msa1457860:three_prime_UTR 30.0%
TGAAGAACTTCAAAGAAAGA+AGG + tig0039250:1872-1891 None:intergenic 30.0%
!! TTCTTTGAAGTTCTTCAGAA+AGG - tig0039250:1875-1894 Msa1457860:three_prime_UTR 30.0%
!! TCTTTGAAGTTCTTCAGAAA+GGG - tig0039250:1876-1895 Msa1457860:three_prime_UTR 30.0%
! CTTTTCCATATCAACTGAAA+CGG + tig0039250:1945-1964 None:intergenic 30.0%
GATATGGAAAAGATCTTTCT+TGG - tig0039250:1953-1972 Msa1457860:three_prime_UTR 30.0%
! GTGCTGCATTTTATGTTTTT+TGG - tig0039250:2234-2253 Msa1457860:intron 30.0%
! GTTATGAATTTGGGATATAG+TGG - tig0039250:2447-2466 Msa1457860:intron 30.0%
GCAGAAATATGTGACAAATA+AGG + tig0039250:2484-2503 None:intergenic 30.0%
CTCATAGAAATTGTCAGATT+TGG - tig0039250:2536-2555 Msa1457860:intron 30.0%
GAAATTGTCAGATTTGGATT+TGG - tig0039250:2542-2561 Msa1457860:intron 30.0%
!! CTTTTTGCTTTTGTTCTTTG+TGG - tig0039250:2566-2585 Msa1457860:intron 30.0%
! CAGTATCTTAGGCTTTTTAA+AGG + tig0039250:2716-2735 None:intergenic 30.0%
TAGTTTGGTTGTCCAATAAA+AGG - tig0039250:2839-2858 Msa1457860:intron 30.0%
AGTTTGGTTGTCCAATAAAA+GGG - tig0039250:2840-2859 Msa1457860:intron 30.0%
CATTATGAATGTAGTCCATT+TGG + tig0039250:2927-2946 None:intergenic 30.0%
TAATCAACATAGCATAAGCA+GGG + tig0039250:3011-3030 None:intergenic 30.0%
ATAATCAACATAGCATAAGC+AGG + tig0039250:3012-3031 None:intergenic 30.0%
GATTATGGATTTACCATTTC+AGG - tig0039250:3032-3051 Msa1457860:intron 30.0%
TTACAATTTAGCGCTAAATC+TGG + tig0039250:3138-3157 None:intergenic 30.0%
! CTGATTTTATTAAGCTCTTC+AGG + tig0039250:3318-3337 None:intergenic 30.0%
TAAACTATCGTGAGACTATT+TGG + tig0039250:3388-3407 None:intergenic 30.0%
!! GTCAACTGATTTGAATGTAT+TGG - tig0039250:3680-3699 Msa1457860:intron 30.0%
TATTTACATAGTTTCTCCTC+TGG - tig0039250:3729-3748 Msa1457860:intron 30.0%
TACATACTGCAAAAAGAGTA+AGG + tig0039250:4009-4028 None:intergenic 30.0%
!!! TTGTTGATTTGTTCCTTTTC+TGG - tig0039250:4084-4103 Msa1457860:intron 30.0%
!!! GACTGAATGGTTTTATAACA+AGG - tig0039250:4185-4204 Msa1457860:CDS 30.0%
!! TAAAAGAGTGTTTACTTCAG+CGG - tig0039250:4332-4351 Msa1457860:intron 30.0%
GAAAGAAAACAAATGTCTTG+CGG - tig0039250:4658-4677 Msa1457860:intron 30.0%
! CTACTGATTAAAATTTGGTC+AGG + tig0039250:4724-4743 None:intergenic 30.0%
! TCAGGCTACTGATTAAAATT+TGG + tig0039250:4729-4748 None:intergenic 30.0%
TCTAATCCTTCTGTAATATC+AGG + tig0039250:4818-4837 None:intergenic 30.0%
ATCAAATTTCGAAGTCATGT+GGG + tig0039250:4961-4980 None:intergenic 30.0%
TATCAAATTTCGAAGTCATG+TGG + tig0039250:4962-4981 None:intergenic 30.0%
ACATGACTTCGAAATTTGAT+AGG - tig0039250:4961-4980 Msa1457860:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - tig0039250:5100-5119 Msa1457860:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + tig0039250:5158-5177 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG - tig0039250:5175-5194 Msa1457860:intron 30.0%
TGGTTTATGATAGAACACTA+TGG - tig0039250:5219-5238 Msa1457860:intron 30.0%
GATTTAGAGATAGAAAACTG+TGG + tig0039250:5371-5390 None:intergenic 30.0%
TTATCTTATAGCAGGGAATT+CGG - tig0039250:5489-5508 Msa1457860:intron 30.0%
GATTTCTATAGTTAGTTGAC+CGG - tig0039250:5520-5539 Msa1457860:intron 30.0%
ATAGAGAAAGAAAAGAGGTA+TGG - tig0039250:5900-5919 Msa1457860:five_prime_UTR 30.0%
CTCTTCTTCTTCTTCTTGTA+TGG + tig0039250:1742-1761 None:intergenic 35.0%
!! TGTGTTGTTGTTTATGTGTC+AGG + tig0039250:1801-1820 None:intergenic 35.0%
!! CTTTGAAGTTCTTCAGAAAG+GGG - tig0039250:1877-1896 Msa1457860:three_prime_UTR 35.0%
! TGATTCCGTTTCAGTTGATA+TGG - tig0039250:1937-1956 Msa1457860:three_prime_UTR 35.0%
ATGGAAAAGATCTTTCTTGG+TGG - tig0039250:1956-1975 Msa1457860:three_prime_UTR 35.0%
AAAGATCTTTCTTGGTGGAA+AGG - tig0039250:1961-1980 Msa1457860:three_prime_UTR 35.0%
TTGTGGTATCTGATGCAATT+TGG - tig0039250:2583-2602 Msa1457860:intron 35.0%
TGTGGTATCTGATGCAATTT+GGG - tig0039250:2584-2603 Msa1457860:intron 35.0%
TACAAAGAGGACAGTATCTT+AGG + tig0039250:2727-2746 None:intergenic 35.0%
AGCTTGGAAAAGTTCCATTT+AGG - tig0039250:2887-2906 Msa1457860:CDS 35.0%
GAATGTAGTCCATTTGGATA+AGG + tig0039250:2921-2940 None:intergenic 35.0%
AATCAACATAGCATAAGCAG+GGG + tig0039250:3010-3029 None:intergenic 35.0%
TGAATATGATGCTCCTGAAA+TGG + tig0039250:3048-3067 None:intergenic 35.0%
AGACTATTTGGTAGAGCTTA+TGG + tig0039250:3376-3395 None:intergenic 35.0%
CTCACGATAGTTTATTTCAG+TGG - tig0039250:3394-3413 Msa1457860:intron 35.0%
ATATATCATATCAGTCCTCC+TGG - tig0039250:3642-3661 Msa1457860:CDS 35.0%
! TGGAGGTTCTCAACTATTTT+AGG - tig0039250:3842-3861 Msa1457860:intron 35.0%
TGGACAGGATATAATTCATG+CGG + tig0039250:3940-3959 None:intergenic 35.0%
CTGTAAAAACATGCCAGAAA+AGG + tig0039250:4100-4119 None:intergenic 35.0%
AAATATAGGAATCGCGTTGT+TGG - tig0039250:4123-4142 Msa1457860:CDS 35.0%
TAAAACCATTCAGTCCAAGA+AGG + tig0039250:4180-4199 None:intergenic 35.0%
ACAATCTGCAAGGATTTGAA+AGG + tig0039250:4213-4232 None:intergenic 35.0%
TCATAAAAGGACAATCTGCA+AGG + tig0039250:4223-4242 None:intergenic 35.0%
TTTCCTTGCTCAACTTTATC+AGG - tig0039250:4426-4445 Msa1457860:intron 35.0%
!! CAAGTGATAAGAGTACTACA+GGG + tig0039250:4536-4555 None:intergenic 35.0%
!! TCAAGTGATAAGAGTACTAC+AGG + tig0039250:4537-4556 None:intergenic 35.0%
AATGTGAGTACACCAAACAA+GGG + tig0039250:4589-4608 None:intergenic 35.0%
! TTATTGTCTTGCTAACTTGC+AGG - tig0039250:4789-4808 Msa1457860:intron 35.0%
TATCAAGTTTCGAAGTCATG+TGG + tig0039250:4904-4923 None:intergenic 35.0%
TGATAGAAGATTTAGTGCCT+TGG - tig0039250:4919-4938 Msa1457860:intron 35.0%
TCAAATTTCGAAGTCATGTG+GGG + tig0039250:4960-4979 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG - tig0039250:5103-5122 Msa1457860:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + tig0039250:5180-5199 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - tig0039250:5199-5218 Msa1457860:intron 35.0%
ATTATATGTTCATCGTCGTC+CGG + tig0039250:5542-5561 None:intergenic 35.0%
!! AACTTGGTAATGTTGTTTGC+AGG - tig0039250:5562-5581 Msa1457860:intron 35.0%
!! ACCTATGGAGTATTTTCTGA+TGG - tig0039250:5637-5656 Msa1457860:intron 35.0%
!! CCTATGGAGTATTTTCTGAT+GGG - tig0039250:5638-5657 Msa1457860:intron 35.0%
!! CTATGGAGTATTTTCTGATG+GGG - tig0039250:5639-5658 Msa1457860:intron 35.0%
! AGTATTTTCTGATGGGGTAT+GGG - tig0039250:5645-5664 Msa1457860:intron 35.0%
CAGAGATAGAGAAAGAAAAG+AGG - tig0039250:5895-5914 Msa1457860:five_prime_UTR 35.0%
! AAAAGAGGTATGGTAGAGTT+TGG - tig0039250:5910-5929 Msa1457860:five_prime_UTR 35.0%
ATTAATAATGTAGGGAGGAG+AGG - tig0039250:5980-5999 Msa1457860:five_prime_UTR 35.0%
TTTAGTGCGGTCTTGAATAA+AGG - tig0039250:6040-6059 Msa1457860:five_prime_UTR 35.0%
GAATATAGCTAGAGTCCAAT+TGG + tig0039250:6094-6113 None:intergenic 35.0%
AGAGAGAGAAAATTGTTGGG+TGG - tig0039250:1840-1859 Msa1457860:three_prime_UTR 40.0%
GAGAGAGAAAATTGTTGGGT+GGG - tig0039250:1841-1860 Msa1457860:three_prime_UTR 40.0%
GGAATCATTTGATTCTGCCA+TGG + tig0039250:1924-1943 None:intergenic 40.0%
TGATGCAATTTGGGTGATGT+AGG - tig0039250:2593-2612 Msa1457860:intron 40.0%
AGTTGAAGACAGCTACAAAG+AGG + tig0039250:2740-2759 None:intergenic 40.0%
!! TGTGCTTTTGCTTGCTAGTT+TGG - tig0039250:2824-2843 Msa1457860:intron 40.0%
GTTGTCCAATAAAAGGGCAA+GGG - tig0039250:2846-2865 Msa1457860:intron 40.0%
!! CAGGAGCATCATATTCAAAC+TGG - tig0039250:3051-3070 Msa1457860:intron 40.0%
CATCATATTCAAACTGGCTG+TGG - tig0039250:3057-3076 Msa1457860:intron 40.0%
TCCGTATCTGTCATAGTCTA+CGG - tig0039250:3081-3100 Msa1457860:intron 40.0%
GCAGATATGTCATGTTTCCA+AGG - tig0039250:3570-3589 Msa1457860:intron 40.0%
CTGGGCAGAAAAATAATCCT+TGG + tig0039250:3590-3609 None:intergenic 40.0%
!! AGGATTATTTTTCTGCCCAG+AGG - tig0039250:3590-3609 Msa1457860:intron 40.0%
AACTCTTGTTGAAGTTCCAG+AGG + tig0039250:3748-3767 None:intergenic 40.0%
CAACAAGAGTTCTTGCAGTT+AGG - tig0039250:3757-3776 Msa1457860:intron 40.0%
AGACTTGGCAGATCAAATAG+TGG - tig0039250:3822-3841 Msa1457860:CDS 40.0%
GCATGAATTATATCCTGTCC+AGG - tig0039250:3939-3958 Msa1457860:CDS 40.0%
AATTATATCCTGTCCAGGCT+TGG - tig0039250:3944-3963 Msa1457860:CDS 40.0%
TGTGATGTGTATGGGAGTAA+CGG - tig0039250:3970-3989 Msa1457860:CDS 40.0%
!! CAAGAAGGTGCTTTGCATAA+GGG + tig0039250:4165-4184 None:intergenic 40.0%
TTACATTTCTACGGCATGTG+TGG - tig0039250:4304-4323 Msa1457860:intron 40.0%
CTTCCTGATAAAGTTGAGCA+AGG + tig0039250:4432-4451 None:intergenic 40.0%
CAACTTTATCAGGAAGTTCG+CGG - tig0039250:4436-4455 Msa1457860:intron 40.0%
CTAGCTTAGCACTAACCTTT+CGG + tig0039250:4501-4520 None:intergenic 40.0%
TCTTTCATCCTTCCCTTGTT+TGG - tig0039250:4574-4593 Msa1457860:intron 40.0%
CAATGTGAGTACACCAAACA+AGG + tig0039250:4590-4609 None:intergenic 40.0%
!!! TGTGTTTCTTTTTCAGCTGC+TGG - tig0039250:4629-4648 Msa1457860:intron 40.0%
!!! TGCCGTACGCTTATTTTTGT+TGG - tig0039250:4848-4867 Msa1457860:intron 40.0%
!!! GCCGTACGCTTATTTTTGTT+GGG - tig0039250:4849-4868 Msa1457860:intron 40.0%
CCCCAACAAAAATAAGCGTA+CGG + tig0039250:4853-4872 None:intergenic 40.0%
!!! CCGTACGCTTATTTTTGTTG+GGG - tig0039250:4850-4869 Msa1457860:intron 40.0%
AAGATTTAGTGCCTTGGTTG+AGG - tig0039250:4925-4944 Msa1457860:intron 40.0%
GGATATACATACCTCAACCA+AGG + tig0039250:4939-4958 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - tig0039250:5128-5147 Msa1457860:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - tig0039250:5187-5206 Msa1457860:intron 40.0%
GCATGTCTATAAAACTTGCG+AGG - tig0039250:5323-5342 Msa1457860:intron 40.0%
CCCATCAGAAAATACTCCAT+AGG + tig0039250:5641-5660 None:intergenic 40.0%
! GAGTATTTTCTGATGGGGTA+TGG - tig0039250:5644-5663 Msa1457860:intron 40.0%
ATTAAGGGGTCAATGATTGC+TGG + tig0039250:6139-6158 None:intergenic 40.0%
AGAGAAAATTGTTGGGTGGG+TGG - tig0039250:1844-1863 Msa1457860:three_prime_UTR 45.0%
ATCATCAAGAGCGACATCCA+TGG - tig0039250:1904-1923 Msa1457860:three_prime_UTR 45.0%
GGTTGTCCAATAAAAGGGCA+AGG - tig0039250:2845-2864 Msa1457860:intron 45.0%
! ATGTGCCCTTGCCCTTTTAT+TGG + tig0039250:2854-2873 None:intergenic 45.0%
CCCGTAGACTATGACAGATA+CGG + tig0039250:3085-3104 None:intergenic 45.0%
CCGTATCTGTCATAGTCTAC+GGG - tig0039250:3082-3101 Msa1457860:intron 45.0%
CGTATCTGTCATAGTCTACG+GGG - tig0039250:3083-3102 Msa1457860:intron 45.0%
TCTGGATAAGTGATCAGAGC+TGG + tig0039250:3120-3139 None:intergenic 45.0%
AAGTGCATTACGACCCTGTT+TGG - tig0039250:3156-3175 Msa1457860:intron 45.0%
TTGATCTGCCAAGTCTTCAG+CGG + tig0039250:3818-3837 None:intergenic 45.0%
CTTGGCAGATCAAATAGTGG+AGG - tig0039250:3825-3844 Msa1457860:intron 45.0%
!! CTTGGTGCTGTGATGTGTAT+GGG - tig0039250:3962-3981 Msa1457860:CDS 45.0%
!! CCAAGAAGGTGCTTTGCATA+AGG + tig0039250:4166-4185 None:intergenic 45.0%
! CCTTATGCAAAGCACCTTCT+TGG - tig0039250:4163-4182 Msa1457860:CDS 45.0%
AAGCACCTTCTTGGACTGAA+TGG - tig0039250:4172-4191 Msa1457860:CDS 45.0%
GCTTGAACTATCTCTGACTC+TGG + tig0039250:4475-4494 None:intergenic 45.0%
GATAGTTCAAGCTTGCCGAA+AGG - tig0039250:4483-4502 Msa1457860:intron 45.0%
TGAGTACACCAAACAAGGGA+AGG + tig0039250:4585-4604 None:intergenic 45.0%
! TTGTCTTGCTAACTTGCAGG+AGG - tig0039250:4792-4811 Msa1457860:intron 45.0%
AGGAGGCCTGATATTACAGA+AGG - tig0039250:4809-4828 Msa1457860:intron 45.0%
GATAGCCTCAGAATGGAATG+GGG + tig0039250:4882-4901 None:intergenic 45.0%
GGATAGCCTCAGAATGGAAT+GGG + tig0039250:4883-4902 None:intergenic 45.0%
TGGATAGCCTCAGAATGGAA+TGG + tig0039250:4884-4903 None:intergenic 45.0%
TCATGTGGATAGCCTCAGAA+TGG + tig0039250:4889-4908 None:intergenic 45.0%
TGATAGGAGATTTAGTGCCG+TGG - tig0039250:4977-4996 Msa1457860:intron 45.0%
CATGCTACATACCACAACCA+CGG + tig0039250:4997-5016 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - tig0039250:5112-5131 Msa1457860:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - tig0039250:5122-5141 Msa1457860:intron 45.0%
AAAGAGGTAGAGGAAGACCT+AGG - tig0039250:5138-5157 Msa1457860:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0039250:5268-5287 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0039250:5269-5288 None:intergenic 45.0%
GCTGTCCGATCTCAAATTAG+CGG - tig0039250:5437-5456 Msa1457860:intron 45.0%
! GTAATGTTGTTTGCAGGTCC+AGG - tig0039250:5568-5587 Msa1457860:intron 45.0%
TTGTGGATCAATGGTGACAG+AGG - tig0039250:5592-5611 Msa1457860:intron 45.0%
ATAGGTATCAGCATCGCATG+CGG + tig0039250:5623-5642 None:intergenic 45.0%
! TGATGGGGTATGGGTTGTAT+AGG - tig0039250:5654-5673 Msa1457860:intron 45.0%
!! AGATGCAAGATGGGCTAAGT+GGG + tig0039250:5709-5728 None:intergenic 45.0%
! CTTCTTTCTCCGGAAAGCAT+GGG - tig0039250:5737-5756 Msa1457860:intron 45.0%
! TTCTTTCTCCGGAAAGCATG+GGG - tig0039250:5738-5757 Msa1457860:intron 45.0%
AGCGAAACACGCGTCTTTAT+GGG + tig0039250:5776-5795 None:intergenic 45.0%
! AGAGGTATGGTAGAGTTTGG+AGG - tig0039250:5913-5932 Msa1457860:five_prime_UTR 45.0%
GAGGTATGGTAGAGTTTGGA+GGG - tig0039250:5914-5933 Msa1457860:five_prime_UTR 45.0%
AGGTATGGTAGAGTTTGGAG+GGG - tig0039250:5915-5934 Msa1457860:five_prime_UTR 45.0%
! TTGGAGGGGGTGTAGATAAA+AGG - tig0039250:5929-5948 Msa1457860:five_prime_UTR 45.0%
! TGGAGGGGGTGTAGATAAAA+GGG - tig0039250:5930-5949 Msa1457860:five_prime_UTR 45.0%
TGTCATAGTCTACGGGGATC+AGG - tig0039250:3089-3108 Msa1457860:intron 50.0%
TTACAAACCTCGTGTCCAGG+AGG + tig0039250:3660-3679 None:intergenic 50.0%
GACTTACAAACCTCGTGTCC+AGG + tig0039250:3663-3682 None:intergenic 50.0%
!! GCTTGGTGCTGTGATGTGTA+TGG - tig0039250:3961-3980 Msa1457860:CDS 50.0%
ATGTGTATGGGAGTAACGGC+TGG - tig0039250:3974-3993 Msa1457860:CDS 50.0%
ACTTCAGCGGTACTTCAGCA+AGG - tig0039250:4345-4364 Msa1457860:intron 50.0%
!! CAGCAAGGTATTGTACCGTG+AGG - tig0039250:4360-4379 Msa1457860:intron 50.0%
CGACAGAGCTACAATCCTCA+CGG + tig0039250:4378-4397 None:intergenic 50.0%
CAGTTCCCCATTCCATTCTG+AGG - tig0039250:4874-4893 Msa1457860:intron 50.0%
GAGATTTAGTGCCGTGGTTG+TGG - tig0039250:4983-5002 Msa1457860:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + tig0039250:5264-5283 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0039250:5270-5289 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0039250:5267-5286 Msa1457860:intron 50.0%
GTCCGATCTCAAATTAGCGG+CGG - tig0039250:5440-5459 Msa1457860:intron 50.0%
! CTCCGCCGCTAATTTGAGAT+CGG + tig0039250:5445-5464 None:intergenic 50.0%
TCACCATTGATCCACAAGCC+TGG + tig0039250:5589-5608 None:intergenic 50.0%
GCATGCGATGCTGATACCTA+TGG - tig0039250:5622-5641 Msa1457860:intron 50.0%
!! GAGATGCAAGATGGGCTAAG+TGG + tig0039250:5710-5729 None:intergenic 50.0%
TTTCCGGAGAAAGAAGCTCC+GGG + tig0039250:5733-5752 None:intergenic 50.0%
CTTTCCGGAGAAAGAAGCTC+CGG + tig0039250:5734-5753 None:intergenic 50.0%
GCTTCTTTCTCCGGAAAGCA+TGG - tig0039250:5736-5755 Msa1457860:intron 50.0%
AGCTTCAACCCCATGCTTTC+CGG + tig0039250:5749-5768 None:intergenic 50.0%
CAGCGAAACACGCGTCTTTA+TGG + tig0039250:5777-5796 None:intergenic 50.0%
CATAAAGACGCGTGTTTCGC+TGG - tig0039250:5775-5794 Msa1457860:intron 50.0%
GGTATGGTAGAGTTTGGAGG+GGG - tig0039250:5916-5935 Msa1457860:five_prime_UTR 50.0%
TAATGTAGGGAGGAGAGGAG+AGG - tig0039250:5985-6004 Msa1457860:five_prime_UTR 50.0%
GCAGCAAAGAAGCAGCCTCT+GGG + tig0039250:3608-3627 None:intergenic 55.0%
AGCAGCAAAGAAGCAGCCTC+TGG + tig0039250:3609-3628 None:intergenic 55.0%
TATCAGTCCTCCTGGACACG+AGG - tig0039250:3650-3669 Msa1457860:CDS 55.0%
TGCCAAGTCTTCAGCGGAAG+GGG + tig0039250:3812-3831 None:intergenic 55.0%
CTGCCAAGTCTTCAGCGGAA+GGG + tig0039250:3813-3832 None:intergenic 55.0%
TCTGCCAAGTCTTCAGCGGA+AGG + tig0039250:3814-3833 None:intergenic 55.0%
ACACATCACAGCACCAAGCC+TGG + tig0039250:3960-3979 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + tig0039250:5256-5275 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - tig0039250:5255-5274 Msa1457860:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - tig0039250:5256-5275 Msa1457860:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - tig0039250:5262-5281 Msa1457860:intron 55.0%
TGTTTGCAGGTCCAGGCTTG+TGG - tig0039250:5575-5594 Msa1457860:intron 55.0%
GGTCCAGGCTTGTGGATCAA+TGG - tig0039250:5583-5602 Msa1457860:intron 55.0%
GGGCTGTGACTGAACTTGCA+TGG + tig0039250:5680-5699 None:intergenic 55.0%
GCAAGTTCAGTCACAGCCCA+AGG - tig0039250:5681-5700 Msa1457860:intron 55.0%
! ATGGGCTAAGTGGGCTCCTT+GGG + tig0039250:5700-5719 None:intergenic 55.0%
TAGCCCATCTTGCATCTCCC+CGG - tig0039250:5712-5731 Msa1457860:intron 55.0%
TTCCGGAGAAAGAAGCTCCG+GGG + tig0039250:5732-5751 None:intergenic 55.0%
TGCCCCTTCCGCTGAAGACT+TGG - tig0039250:3807-3826 Msa1457860:CDS 60.0%
TCACAGCACCAAGCCTGGAC+AGG + tig0039250:3955-3974 None:intergenic 60.0%
!! GATGGGCTAAGTGGGCTCCT+TGG + tig0039250:5701-5720 None:intergenic 60.0%
GCTCCGGGGAGATGCAAGAT+GGG + tig0039250:5718-5737 None:intergenic 60.0%
AGCTCCGGGGAGATGCAAGA+TGG + tig0039250:5719-5738 None:intergenic 60.0%
CTCCCCGGAGCTTCTTTCTC+CGG - tig0039250:5727-5746 Msa1457860:intron 60.0%
Chromosome Type Strat End Strand Name
tig0039250 gene 1634 6168 1634 ID=Msa1457860;Name=Msa1457860
tig0039250 mRNA 1634 6168 1634 ID=Msa1457860-mRNA-1;Parent=Msa1457860;Name=Msa1457860-mRNA-1;_AED=0.22;_eAED=0.22;_QI=289|0.8|0.72|1|0.8|0.72|11|363|350
tig0039250 exon 1634 2218 1634 ID=Msa1457860-mRNA-1:exon:21449;Parent=Msa1457860-mRNA-1
tig0039250 exon 2856 2991 2856 ID=Msa1457860-mRNA-1:exon:21448;Parent=Msa1457860-mRNA-1
tig0039250 exon 3102 3157 3102 ID=Msa1457860-mRNA-1:exon:21447;Parent=Msa1457860-mRNA-1
tig0039250 exon 3298 3354 3298 ID=Msa1457860-mRNA-1:exon:21446;Parent=Msa1457860-mRNA-1
tig0039250 exon 3436 3513 3436 ID=Msa1457860-mRNA-1:exon:21445;Parent=Msa1457860-mRNA-1
tig0039250 exon 3596 3682 3596 ID=Msa1457860-mRNA-1:exon:21444;Parent=Msa1457860-mRNA-1
tig0039250 exon 3781 3841 3781 ID=Msa1457860-mRNA-1:exon:21443;Parent=Msa1457860-mRNA-1
tig0039250 exon 3939 4086 3939 ID=Msa1457860-mRNA-1:exon:21442;Parent=Msa1457860-mRNA-1
tig0039250 exon 4123 4228 4123 ID=Msa1457860-mRNA-1:exon:21441;Parent=Msa1457860-mRNA-1
tig0039250 exon 4707 4748 4707 ID=Msa1457860-mRNA-1:exon:21440;Parent=Msa1457860-mRNA-1
tig0039250 exon 5820 6168 5820 ID=Msa1457860-mRNA-1:exon:21439;Parent=Msa1457860-mRNA-1
tig0039250 five_prime_UTR 5880 6168 5880 ID=Msa1457860-mRNA-1:five_prime_utr;Parent=Msa1457860-mRNA-1
tig0039250 CDS 5820 5879 5820 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 4707 4748 4707 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 4123 4228 4123 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3939 4086 3939 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3781 3841 3781 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3596 3682 3596 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3436 3513 3436 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3298 3354 3298 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 3102 3157 3102 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 2856 2991 2856 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 CDS 1997 2218 1997 ID=Msa1457860-mRNA-1:cds;Parent=Msa1457860-mRNA-1
tig0039250 three_prime_UTR 1634 1996 1634 ID=Msa1457860-mRNA-1:three_prime_utr;Parent=Msa1457860-mRNA-1
Gene Sequence

>Msa1457860

ATGGCAGAATCAAATGATTCCGTTTCAGTTGATATGGAAAAGATCTTTCTTGGTGGAAAGGAGCATCATATTCAAACTGGCTGTGGTTCCGTATCTGTCATAATATGTCATGTTTCCAAGGATTATTTTTCTGCCCAGAGGCTGCTTCTTTGCTGCTTCATAACTTTTGCATATATCATATCAGTCCTCCTGGACACGAGGTTTGTAAAACCGAATATTATTATTTACATAGTTTCTCCTCTGGAACTTCAACAAGAGTTCTTGCAGTTAGGAGCTGCTGCGATTTGTTCTGATAATCATGCCCCTTCCGCTGAAGACTTGGCAGATCAAATAGTGGAGGTTCTCAACTATTTTAGGCTTGGTGCTGTGATGTGTATGGGAGTAACGGCTGGTGCTTATATCCTTACTCTTTTTGCAATGAAATATAGGAATCGCGTTGTTGGATTAATACTTGTATCTCCCTTATGCAAAGCACCTTCTTGGACTGAATGGTTTTATAACAAGGTGATGTCAAATTTGTTACATTTCTACGGCATGTGTGGTTTGCTAAAAGAGTGTTTACTTCAGCGGTACTTCAGCAAGGAAGTTCGCGGTAATGTTGAAGTTCCAGAGTCAGAGATAGTTCAAGCTTGCCGAAAGCTGCTGGATGAGAGAAAGAAAACAAATGTCTTGCGGTTTCTTCAAGCAATTGATCAGAGGCCTGATATTACAGAAGGATTAGAAAAATTAAACTGCCGTACGCTTATTTTTGTTGGGGACAGTTCCCCATTCCATTCTGAGGCTATCCACATGACTTCGAAACTTGATAGAAGATTTAGTGCCTTGGTTGAGGTCCAGGCTTGTGGATCAATGGTGACAGAGGAACAACCGCATGCGATGCTGATACCTATGGAGTATTTTCTGATGGGGTATGGGTTGTATAGGCCATGCAAGTTCAGTCACAGCCCAAGGAGCCCACTTAGCCCATCTTGCATCTCCCCGGAGCTTCTTTCTCCGGAAAGCATGGGGTTGAAGCTAAAGCCCATAAAGACGCGTGTTTCGCTGGAAGTTTGA
Protein sequence

>Msa1457860

MAESNDSVSVDMEKIFLGGKEHHIQTGCGSVSVIICHVSKDYFSAQRLLLCCFITFAYIISVLLDTRFVKPNIIIYIVSPLELQQEFLQLGAAAICSDNHAPSAEDLADQIVEVLNYFRLGAVMCMGVTAGAYILTLFAMKYRNRVVGLILVSPLCKAPSWTEWFYNKVMSNLLHFYGMCGLLKECLLQRYFSKEVRGNVEVPESEIVQACRKLLDERKKTNVLRFLQAIDQRPDITEGLEKLNCRTLIFVGDSSPFHSEAIHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPCKFSHSPRSPLSPSCISPELLSPESMGLKLKPIKTRVSLEV*