Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573670 | XP_039685390.1 | 97.746 | 488 | 10 | 1 | 1 | 488 | 1 | 487 | 0.0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573670 | sp|Q9M0F8|NAC75_ARATH | 60.118 | 509 | 163 | 18 | 3 | 486 | 4 | 497 | 5.48e-177 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573670 | G7L7D0 | 97.541 | 488 | 9 | 2 | 1 | 488 | 1 | 485 | 0.0 | 981 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0573670 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0573670 | Msa0575690 | 0.810427 | 1.159010e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573670 | MtrunA17_Chr8g0389661 | 97.541 | 488 | 9 | 2 | 1 | 488 | 1 | 485 | 0.0 | 981 |
| Msa0573670 | MtrunA17_Chr4g0046431 | 69.484 | 213 | 52 | 5 | 30 | 238 | 47 | 250 | 1.18e-97 | 297 |
| Msa0573670 | MtrunA17_Chr4g0040541 | 73.846 | 195 | 40 | 4 | 30 | 219 | 26 | 214 | 6.20e-95 | 289 |
| Msa0573670 | MtrunA17_Chr2g0282871 | 63.182 | 220 | 67 | 5 | 3 | 218 | 8 | 217 | 7.56e-90 | 276 |
| Msa0573670 | MtrunA17_Chr2g0324961 | 73.737 | 198 | 40 | 4 | 30 | 222 | 27 | 217 | 6.05e-89 | 273 |
| Msa0573670 | MtrunA17_Chr8g0367761 | 71.739 | 184 | 41 | 4 | 30 | 209 | 47 | 223 | 3.93e-87 | 268 |
| Msa0573670 | MtrunA17_Chr1g0198751 | 53.394 | 221 | 92 | 5 | 27 | 245 | 36 | 247 | 6.14e-75 | 244 |
| Msa0573670 | MtrunA17_Chr5g0422431 | 59.162 | 191 | 68 | 3 | 27 | 215 | 36 | 218 | 4.18e-73 | 238 |
| Msa0573670 | MtrunA17_Chr7g0227071 | 53.646 | 192 | 80 | 4 | 25 | 213 | 30 | 215 | 3.64e-62 | 211 |
| Msa0573670 | MtrunA17_Chr1g0198741 | 48.951 | 143 | 66 | 3 | 104 | 246 | 8 | 143 | 3.49e-36 | 135 |
| Msa0573670 | MtrunA17_Chr6g0484441 | 29.680 | 219 | 117 | 9 | 47 | 256 | 5 | 195 | 1.39e-13 | 71.6 |
| Msa0573670 | MtrunA17_Chr8g0359921 | 32.895 | 152 | 76 | 5 | 45 | 194 | 12 | 139 | 2.37e-13 | 71.2 |
| Msa0573670 | MtrunA17_Chr1g0147421 | 31.176 | 170 | 90 | 6 | 47 | 211 | 27 | 174 | 1.24e-12 | 69.3 |
| Msa0573670 | MtrunA17_Chr3g0124761 | 34.416 | 154 | 72 | 8 | 45 | 195 | 5 | 132 | 1.32e-12 | 68.2 |
| Msa0573670 | MtrunA17_Chr2g0318081 | 32.895 | 152 | 76 | 5 | 45 | 194 | 14 | 141 | 1.72e-12 | 68.6 |
| Msa0573670 | MtrunA17_Chr7g0253011 | 30.851 | 188 | 94 | 8 | 38 | 213 | 8 | 171 | 1.91e-12 | 68.9 |
| Msa0573670 | MtrunA17_Chr2g0318101 | 32.258 | 155 | 79 | 7 | 47 | 198 | 15 | 146 | 3.96e-12 | 67.8 |
| Msa0573670 | MtrunA17_Chr4g0047841 | 34.437 | 151 | 73 | 8 | 47 | 194 | 15 | 142 | 4.58e-12 | 67.4 |
| Msa0573670 | MtrunA17_Chr3g0139331 | 31.579 | 190 | 95 | 9 | 47 | 226 | 11 | 175 | 5.76e-12 | 67.0 |
| Msa0573670 | MtrunA17_Chr4g0060931 | 30.286 | 175 | 90 | 7 | 45 | 211 | 15 | 165 | 1.24e-11 | 66.2 |
| Msa0573670 | MtrunA17_Chr2g0309891 | 32.051 | 156 | 74 | 7 | 45 | 194 | 4 | 133 | 1.29e-11 | 65.9 |
| Msa0573670 | MtrunA17_Chr7g0263931 | 31.788 | 151 | 77 | 6 | 47 | 194 | 11 | 138 | 1.42e-11 | 65.9 |
| Msa0573670 | MtrunA17_Chr7g0217711 | 32.000 | 150 | 76 | 6 | 47 | 194 | 19 | 144 | 2.33e-11 | 62.8 |
| Msa0573670 | MtrunA17_Chr3g0091921 | 31.638 | 177 | 89 | 7 | 43 | 211 | 12 | 164 | 2.53e-11 | 64.7 |
| Msa0573670 | MtrunA17_Chr5g0433781 | 29.341 | 167 | 86 | 6 | 45 | 205 | 4 | 144 | 2.73e-11 | 65.9 |
| Msa0573670 | MtrunA17_Chr7g0214071 | 28.571 | 203 | 109 | 11 | 47 | 243 | 15 | 187 | 3.93e-11 | 63.5 |
| Msa0573670 | MtrunA17_Chr2g0309331 | 32.000 | 175 | 87 | 9 | 45 | 211 | 8 | 158 | 5.69e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573670 | AT4G29230.2 | 60.236 | 508 | 163 | 17 | 3 | 486 | 4 | 496 | 6.37e-180 | 514 |
| Msa0573670 | AT4G29230.1 | 60.118 | 509 | 163 | 18 | 3 | 486 | 4 | 497 | 5.58e-178 | 509 |
| Msa0573670 | AT4G29230.3 | 60.739 | 433 | 141 | 13 | 3 | 421 | 4 | 421 | 1.73e-152 | 442 |
| Msa0573670 | AT5G56620.3 | 48.861 | 483 | 146 | 15 | 10 | 475 | 4 | 402 | 4.24e-134 | 394 |
| Msa0573670 | AT5G56620.2 | 48.861 | 483 | 146 | 15 | 10 | 475 | 4 | 402 | 5.15e-134 | 393 |
| Msa0573670 | AT5G56620.1 | 51.463 | 410 | 118 | 11 | 10 | 400 | 4 | 351 | 7.65e-121 | 359 |
| Msa0573670 | AT4G28500.1 | 66.514 | 218 | 63 | 3 | 9 | 222 | 17 | 228 | 4.78e-97 | 295 |
| Msa0573670 | AT1G28470.1 | 67.513 | 197 | 50 | 3 | 30 | 219 | 53 | 242 | 2.94e-89 | 276 |
| Msa0573670 | AT1G25580.1 | 58.247 | 194 | 65 | 5 | 27 | 218 | 36 | 215 | 1.31e-68 | 226 |
| Msa0573670 | AT5G14490.4 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 2.98e-58 | 196 |
| Msa0573670 | AT5G14490.1 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 3.67e-58 | 196 |
| Msa0573670 | AT5G14490.2 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.86e-58 | 194 |
| Msa0573670 | AT5G14490.3 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 6.89e-58 | 196 |
| Msa0573670 | AT3G01600.1 | 50.510 | 196 | 87 | 5 | 23 | 215 | 28 | 216 | 6.01e-55 | 188 |
| Msa0573670 | AT1G01720.1 | 35.065 | 154 | 71 | 8 | 45 | 195 | 5 | 132 | 5.83e-14 | 72.8 |
| Msa0573670 | AT5G09330.5 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.27e-12 | 70.5 |
| Msa0573670 | AT5G09330.2 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.27e-12 | 70.5 |
| Msa0573670 | AT5G09330.4 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.27e-12 | 70.5 |
| Msa0573670 | AT5G09330.3 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.27e-12 | 70.5 |
| Msa0573670 | AT5G09330.1 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.27e-12 | 70.5 |
| Msa0573670 | AT3G15500.1 | 31.579 | 152 | 78 | 5 | 45 | 194 | 12 | 139 | 3.65e-12 | 67.8 |
| Msa0573670 | AT1G02220.1 | 30.719 | 153 | 79 | 5 | 48 | 197 | 4 | 132 | 4.01e-12 | 68.2 |
| Msa0573670 | AT1G33060.2 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.74e-12 | 68.6 |
| Msa0573670 | AT1G33060.1 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.97e-12 | 68.6 |
| Msa0573670 | AT1G52890.1 | 30.921 | 152 | 79 | 5 | 45 | 194 | 12 | 139 | 1.23e-11 | 66.2 |
| Msa0573670 | AT4G27410.3 | 27.919 | 197 | 95 | 7 | 45 | 218 | 12 | 184 | 2.32e-11 | 65.5 |
| Msa0573670 | AT3G29035.1 | 30.682 | 176 | 88 | 7 | 45 | 211 | 22 | 172 | 2.33e-11 | 65.5 |
| Msa0573670 | AT5G39610.1 | 30.222 | 225 | 117 | 10 | 45 | 260 | 18 | 211 | 2.97e-11 | 64.7 |
Find 139 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCGAAATGATCAGATTTA+AGG | 0.202690 | 4_1:-76935281 | None:intergenic |
| CTTCCATTGATATTATAATT+AGG | 0.223614 | 4_1:-76935129 | None:intergenic |
| GCATTTGTGAAGCTTGTTAA+AGG | 0.254170 | 4_1:-76935243 | None:intergenic |
| AGCTTCTTGTTGGTTTCTAA+TGG | 0.256606 | 4_1:-76938312 | None:intergenic |
| ACCAGACCTGTTATGGTTAA+TGG | 0.262903 | 4_1:+76934859 | Msa0573670:CDS |
| CCTGTTGTATATGCCTTTGA+TGG | 0.263920 | 4_1:-76934748 | None:intergenic |
| GGTTGAAATACTCTTCTTAC+TGG | 0.281746 | 4_1:+76938339 | Msa0573670:CDS |
| TGAAGGTCTTCTTGTTGAAT+TGG | 0.297596 | 4_1:-76933814 | None:intergenic |
| TGTTTACCATTAACCATAAC+AGG | 0.301271 | 4_1:-76934865 | None:intergenic |
| CATCAAAACAAGTTCATGAT+TGG | 0.304962 | 4_1:+76939085 | Msa0573670:three_prime_UTR |
| CACCTTAAATCTGATCATTT+CGG | 0.305151 | 4_1:+76935279 | Msa0573670:CDS |
| GATTGGAAGGCCTACTTATA+TGG | 0.307907 | 4_1:-76936256 | None:intergenic |
| TGGTTTGGAGGAAGTCATTA+TGG | 0.313328 | 4_1:+76937560 | Msa0573670:CDS |
| CAGTAGAAACTTTGAGTCTT+AGG | 0.334208 | 4_1:-76938772 | None:intergenic |
| CACAGCCAAGACAGTGTAAT+TGG | 0.340413 | 4_1:+76935040 | Msa0573670:CDS |
| ATGGTTAATGGTAAACAAAA+AGG | 0.341742 | 4_1:+76934871 | Msa0573670:CDS |
| GTGTGCAACGGAACAAGTTT+TGG | 0.344961 | 4_1:+76938612 | Msa0573670:three_prime_UTR |
| AGGAAGAAACTGTTAGAATA+AGG | 0.352029 | 4_1:-76933447 | None:intergenic |
| TATATGCCTTTGATGGTCTA+TGG | 0.358040 | 4_1:-76934741 | None:intergenic |
| TCAACCACTCAGCTTCTTGT+TGG | 0.371776 | 4_1:-76938322 | None:intergenic |
| TGGAAGGTCTGCGTCTGGTT+TGG | 0.383750 | 4_1:+76937545 | Msa0573670:CDS |
| CATCACCCAATTCGTCTTCT+CGG | 0.388325 | 4_1:-76934944 | None:intergenic |
| CATGTTCTTTGACTCAACTT+TGG | 0.392039 | 4_1:-76934325 | None:intergenic |
| GGTTTGGAGGAAGTCATTAT+GGG | 0.397618 | 4_1:+76937561 | Msa0573670:CDS |
| TATAATAATGATATTAATGT+AGG | 0.399708 | 4_1:-76938808 | None:intergenic |
| TCCACAGCGAGGGCAGTGTT+TGG | 0.404918 | 4_1:-76933949 | None:intergenic |
| TCAATCAATTCTTGATCTGT+TGG | 0.405063 | 4_1:-76934291 | None:intergenic |
| TGGTAAGACCAGACCTGTTA+TGG | 0.407089 | 4_1:+76934852 | Msa0573670:CDS |
| GGGAGGTGGAGAGATGATAG+TGG | 0.407529 | 4_1:-76936285 | None:intergenic |
| GTGAAGCTTGTTAAAGGACT+AGG | 0.412943 | 4_1:-76935237 | None:intergenic |
| TTAAAGTAGAGAGCAAATTC+TGG | 0.413171 | 4_1:+76933363 | Msa0573670:five_prime_UTR |
| CTTCTTCATGTTGTCCAAGA+TGG | 0.416813 | 4_1:-76934975 | None:intergenic |
| TGGAGAGATGATAGTGGAGA+TGG | 0.419657 | 4_1:-76936279 | None:intergenic |
| GATGTGTGATGGAGGGGAGG+TGG | 0.419705 | 4_1:-76936299 | None:intergenic |
| GGAAGAAGAGATAGTGGAAG+TGG | 0.419947 | 4_1:+76935147 | Msa0573670:CDS |
| AATCTGAGTAACAATTTCCT+TGG | 0.423878 | 4_1:-76935181 | None:intergenic |
| GATGGATATGATGATTACTT+TGG | 0.425161 | 4_1:-76938506 | None:intergenic |
| TGAATTCATTCTCACTATTG+AGG | 0.429469 | 4_1:+76934371 | Msa0573670:CDS |
| ATCAATGGAAGAAGAGATAG+TGG | 0.430228 | 4_1:+76935141 | Msa0573670:CDS |
| TCCTTGTAAGTCACACTCTT+CGG | 0.430646 | 4_1:-76934797 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.433929 | 4_1:+76934832 | Msa0573670:CDS |
| AACAAGCTTCACAAATGCCT+TGG | 0.435738 | 4_1:+76935248 | Msa0573670:CDS |
| GAAAACCCGAGAAGACGAAT+TGG | 0.436292 | 4_1:+76934938 | Msa0573670:CDS |
| GATGATAGTGGAGATGGGAT+TGG | 0.442110 | 4_1:-76936273 | None:intergenic |
| ATCACCCAATTCGTCTTCTC+GGG | 0.442795 | 4_1:-76934943 | None:intergenic |
| ATCAGGAGGCTCATGTGATC+AGG | 0.445075 | 4_1:+76936103 | Msa0573670:CDS |
| AGAAAGTGACAAAGAACAAA+GGG | 0.453408 | 4_1:+76938637 | Msa0573670:three_prime_UTR |
| CCATCAAAGGCATATACAAC+AGG | 0.455100 | 4_1:+76934748 | Msa0573670:CDS |
| ACCATTAACCATAACAGGTC+TGG | 0.456313 | 4_1:-76934860 | None:intergenic |
| CTATCATTATAGGTTGGAAT+AGG | 0.457175 | 4_1:+76936050 | Msa0573670:intron |
| TACAATATGCACAAACTCAA+TGG | 0.460608 | 4_1:-76938971 | None:intergenic |
| GAACCTAATTATAATATCAA+TGG | 0.462340 | 4_1:+76935126 | Msa0573670:CDS |
| AATAAATATAAATAATATGA+TGG | 0.464405 | 4_1:-76938851 | None:intergenic |
| GGATCAAATTTCACTCCTGC+TGG | 0.469166 | 4_1:-76934270 | None:intergenic |
| CATCATCATGATTAGAATGA+AGG | 0.470307 | 4_1:+76938389 | Msa0573670:exon |
| CTCACTATTGAGGGAGAAGA+TGG | 0.475585 | 4_1:+76934381 | Msa0573670:CDS |
| ATAAGAGAAATGCAAGCATC+AGG | 0.476627 | 4_1:+76936086 | Msa0573670:CDS |
| TCAGACCAATTACACTGTCT+TGG | 0.476749 | 4_1:-76935045 | None:intergenic |
| GATGAAATGTCTGCTGTTGT+TGG | 0.479390 | 4_1:+76935210 | Msa0573670:CDS |
| CCCTCGTGACATCACATTGA+GGG | 0.485296 | 4_1:+76938742 | Msa0573670:three_prime_UTR |
| AAGGTCTGCGTCTGGTTTGG+AGG | 0.488566 | 4_1:+76937548 | Msa0573670:CDS |
| CTGCGTTTGCACTAATCTGC+TGG | 0.490246 | 4_1:-76936229 | None:intergenic |
| GTGGATGTGTGATGGAGGGG+AGG | 0.491180 | 4_1:-76936302 | None:intergenic |
| TGATGGTGGATGTGTGATGG+AGG | 0.493985 | 4_1:-76936307 | None:intergenic |
| AACTAAGGTGGCTTTAAAGA+AGG | 0.494819 | 4_1:-76933395 | None:intergenic |
| AAAACCCGAGAAGACGAATT+GGG | 0.496349 | 4_1:+76934939 | Msa0573670:CDS |
| CTAATATATCAAGCTCTTGA+GGG | 0.498548 | 4_1:+76933744 | Msa0573670:five_prime_UTR |
| CTTGTTCTCTACACCAACTT+CGG | 0.499621 | 4_1:+76934907 | Msa0573670:CDS |
| GAATTCATTCTCACTATTGA+GGG | 0.500195 | 4_1:+76934372 | Msa0573670:CDS |
| GGAGAGATGATAGTGGAGAT+GGG | 0.502154 | 4_1:-76936278 | None:intergenic |
| TTATTAATATAATACTATGA+AGG | 0.506494 | 4_1:-76933831 | None:intergenic |
| AGTGTTTGGATCCACACAAC+TGG | 0.507034 | 4_1:-76933935 | None:intergenic |
| CATTCTAATCATGATGATGA+TGG | 0.514227 | 4_1:-76938385 | None:intergenic |
| TCTAATATATCAAGCTCTTG+AGG | 0.514788 | 4_1:+76933743 | Msa0573670:five_prime_UTR |
| TGAAGCTTGTTAAAGGACTA+GGG | 0.515511 | 4_1:-76935236 | None:intergenic |
| AGGCACCGAAGTTCATAAAC+CGG | 0.516038 | 4_1:-76938561 | None:intergenic |
| GATGGTGGATGTGTGATGGA+GGG | 0.519141 | 4_1:-76936306 | None:intergenic |
| ATAATAATGATATTAATGTA+GGG | 0.525986 | 4_1:-76938807 | None:intergenic |
| GGTGGTGGAAGGTCTGCGTC+TGG | 0.526615 | 4_1:+76937540 | Msa0573670:CDS |
| TGTGACTTACAAGGAAGTAC+AGG | 0.531187 | 4_1:+76934805 | Msa0573670:CDS |
| GTGATTATGCTAAGTGGTGT+TGG | 0.531304 | 4_1:+76933766 | Msa0573670:five_prime_UTR |
| AGAATGAATTCATCAATCAA+AGG | 0.532417 | 4_1:-76934360 | None:intergenic |
| CATGGTAAGAATTGTCATCA+AGG | 0.534349 | 4_1:-76936331 | None:intergenic |
| ATGGTGGATGTGTGATGGAG+GGG | 0.535220 | 4_1:-76936305 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536833 | 4_1:+76934961 | Msa0573670:CDS |
| TTGGAAAGTGAGTTGAGGTA+TGG | 0.540037 | 4_1:-76938477 | None:intergenic |
| TTTAAGGTGTTGAATATCCA+AGG | 0.540367 | 4_1:-76935265 | None:intergenic |
| AGATAGATAGATATAAACTA+AGG | 0.542206 | 4_1:-76933410 | None:intergenic |
| CAGCAACAACATCATAAACT+AGG | 0.542717 | 4_1:+76937519 | Msa0573670:CDS |
| AAGTGGAAGTTCTTCTTCCA+AGG | 0.544042 | 4_1:+76935164 | Msa0573670:CDS |
| ACAACAACTGGTGAAGGAAG+TGG | 0.551888 | 4_1:+76935099 | Msa0573670:CDS |
| CAACATGAAGAAGAGAAAGA+AGG | 0.555164 | 4_1:+76934985 | Msa0573670:CDS |
| AGAATTGTCATCAAGGATGA+TGG | 0.555788 | 4_1:-76936324 | None:intergenic |
| GTGTGAGTATAGAAAACAAA+CGG | 0.556739 | 4_1:+76933292 | None:intergenic |
| GAATGAATTCATCAATCAAA+GGG | 0.558039 | 4_1:-76934359 | None:intergenic |
| GGATGATGGTGGATGTGTGA+TGG | 0.559886 | 4_1:-76936310 | None:intergenic |
| ACGCAGCTTTCCATATAAGT+AGG | 0.560422 | 4_1:+76936246 | Msa0573670:CDS |
| TGTGGACACAAATTTGATCA+AGG | 0.561466 | 4_1:+76933966 | Msa0573670:CDS |
| CAAATTTGATCAAGGCAAGC+CGG | 0.561825 | 4_1:+76933974 | Msa0573670:CDS |
| TTATAGGTTGGAATAGGAGA+AGG | 0.569160 | 4_1:+76936056 | Msa0573670:intron |
| CAACATCATAAACTAGGTGG+TGG | 0.571157 | 4_1:+76937525 | Msa0573670:CDS |
| ACCGAAGAGTGTGACTTACA+AGG | 0.573730 | 4_1:+76934796 | Msa0573670:CDS |
| TGATCTCATAGATTCTAAGC+TGG | 0.574339 | 4_1:+76933905 | Msa0573670:CDS |
| AAACTGTTAGAATAAGGTTG+AGG | 0.575223 | 4_1:-76933441 | None:intergenic |
| CAAATTTGTGTCCACAGCGA+GGG | 0.577429 | 4_1:-76933959 | None:intergenic |
| CTGTTAGAATAAGGTTGAGG+TGG | 0.589168 | 4_1:-76933438 | None:intergenic |
| ATCATAAACTAGGTGGTGGA+AGG | 0.591383 | 4_1:+76937529 | Msa0573670:CDS |
| TCCAAACACTGCCCTCGCTG+TGG | 0.598125 | 4_1:+76933948 | Msa0573670:CDS |
| CTGGAAGAGCACCAGTTGTG+TGG | 0.599801 | 4_1:+76933924 | Msa0573670:CDS |
| TCCCTCGTGACATCACATTG+AGG | 0.600903 | 4_1:+76938741 | Msa0573670:three_prime_UTR |
| TCTCTACTTTAACTGACTGA+AGG | 0.601315 | 4_1:-76933352 | None:intergenic |
| ATACAACAGGAACACGAAAG+AGG | 0.605890 | 4_1:+76934761 | Msa0573670:CDS |
| ACTTTAACTGACTGAAGGCA+AGG | 0.606235 | 4_1:-76933347 | None:intergenic |
| TCCCTCAATGTGATGTCACG+AGG | 0.612447 | 4_1:-76938743 | None:intergenic |
| GTTTGGAGGAAGTCATTATG+GGG | 0.614581 | 4_1:+76937562 | Msa0573670:CDS |
| TGGAACTAACAGGATTGGCT+AGG | 0.614683 | 4_1:+76934243 | Msa0573670:intron |
| TTGAGGGTGATTATGCTAAG+TGG | 0.615720 | 4_1:+76933760 | Msa0573670:five_prime_UTR |
| AAGAAAGTGACAAAGAACAA+AGG | 0.616998 | 4_1:+76938636 | Msa0573670:three_prime_UTR |
| ATAGTGGAGATGGGATTGGA+AGG | 0.617201 | 4_1:-76936269 | None:intergenic |
| TTGTTGTCATGAGGGTCGAC+TGG | 0.619843 | 4_1:-76938362 | None:intergenic |
| ACAACAACAACAACTGGTGA+AGG | 0.627737 | 4_1:+76935093 | Msa0573670:CDS |
| TAGATAGATATAAACTAAGG+TGG | 0.629951 | 4_1:-76933407 | None:intergenic |
| TCAAATTTGTGTCCACAGCG+AGG | 0.631442 | 4_1:-76933960 | None:intergenic |
| GATTGGCTAGGTCTACCAGC+AGG | 0.635385 | 4_1:+76934255 | Msa0573670:CDS |
| TGATGATGGTTGTTGTCATG+AGG | 0.638720 | 4_1:-76938371 | None:intergenic |
| AGGAGGCTCATGTGATCAGG+AGG | 0.640907 | 4_1:+76936106 | Msa0573670:CDS |
| GATGATGGTTGTTGTCATGA+GGG | 0.647114 | 4_1:-76938370 | None:intergenic |
| GAAACACTAACTGTGTGCAA+CGG | 0.654931 | 4_1:+76938600 | Msa0573670:three_prime_UTR |
| AGAGAAATGCAAGCATCAGG+AGG | 0.658708 | 4_1:+76936089 | Msa0573670:CDS |
| GTACAGGAGGAGAAACAAGA+TGG | 0.661050 | 4_1:+76934821 | Msa0573670:CDS |
| ACAACTGGTGAAGGAAGTGG+TGG | 0.665064 | 4_1:+76935102 | Msa0573670:CDS |
| GACTTACAAGGAAGTACAGG+AGG | 0.666650 | 4_1:+76934808 | Msa0573670:CDS |
| ATTGTCATCAAGGATGATGG+TGG | 0.672021 | 4_1:-76936321 | None:intergenic |
| CCCTCAATGTGATGTCACGA+GGG | 0.674289 | 4_1:-76938742 | None:intergenic |
| GAAAGTGACAAAGAACAAAG+GGG | 0.680561 | 4_1:+76938638 | Msa0573670:three_prime_UTR |
| AACGTCGTCTGATATCAAAG+AGG | 0.681906 | 4_1:+76937593 | Msa0573670:CDS |
| GAAACCAACAAGAAGCTGAG+TGG | 0.685593 | 4_1:+76938318 | Msa0573670:CDS |
| GGAGCATGATTGTTGAAACA+TGG | 0.690838 | 4_1:-76936349 | None:intergenic |
| CAACAACATCATAAACTAGG+TGG | 0.704443 | 4_1:+76937522 | Msa0573670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATAGAAATTAAAAAT+TGG | - | chr4_1:76933637-76933656 | None:intergenic | 10.0% |
| !! | CAATAAAAAATTAAGAAAAT+TGG | - | chr4_1:76933690-76933709 | None:intergenic | 10.0% |
| !!! | TAATTTTTTATTGATTTTGT+AGG | + | chr4_1:76933697-76933716 | Msa0573670:intron | 10.0% |
| !! | TTATTAATATAATACTATGA+AGG | - | chr4_1:76933834-76933853 | None:intergenic | 10.0% |
| !! | AAAAATAAAAAGCAATTAAA+GGG | - | chr4_1:76934209-76934228 | None:intergenic | 10.0% |
| !! | TAAAAATAAAAAGCAATTAA+AGG | - | chr4_1:76934210-76934229 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTTGAATTTCAA+TGG | + | chr4_1:76934223-76934242 | Msa0573670:intron | 10.0% |
| !! | AATTAATTAATTAATTAACC+TGG | - | chr4_1:76934435-76934454 | None:intergenic | 10.0% |
| !!! | AAAAAAATTATCTCTAATTT+TGG | - | chr4_1:76935583-76935602 | None:intergenic | 10.0% |
| !!! | TCAAATTATTAAAGTTTTAT+TGG | + | chr4_1:76936733-76936752 | Msa0573670:intron | 10.0% |
| !! | AAAAAGAAAAGAAAAAAAAA+AGG | + | chr4_1:76938685-76938704 | Msa0573670:three_prime_UTR | 10.0% |
| !! | ATAATAATGATATTAATGTA+GGG | - | chr4_1:76938810-76938829 | None:intergenic | 10.0% |
| !! | TATAATAATGATATTAATGT+AGG | - | chr4_1:76938811-76938830 | None:intergenic | 10.0% |
| !! | AAATAGAAGAAGAAAAAAAA+AGG | - | chr4_1:76933470-76933489 | None:intergenic | 15.0% |
| !! | ATAAATTTAAATTCTCAGTT+AGG | + | chr4_1:76934516-76934535 | Msa0573670:intron | 15.0% |
| !! | ATAATTTGAAAAAATGAAAG+TGG | - | chr4_1:76935444-76935463 | None:intergenic | 15.0% |
| !!! | TTTCCTCTAATATTTTTTAT+TGG | + | chr4_1:76935600-76935619 | Msa0573670:intron | 15.0% |
| !! | TTACCAATAAAAAATATTAG+AGG | - | chr4_1:76935606-76935625 | None:intergenic | 15.0% |
| !! | TTATATGAAATTTCAACATT+CGG | + | chr4_1:76935744-76935763 | Msa0573670:intron | 15.0% |
| !! | ATATTTGATACTATCATTAT+AGG | + | chr4_1:76936040-76936059 | Msa0573670:intron | 15.0% |
| !!! | AATAATTTTCAATTTTGTCT+TGG | + | chr4_1:76936626-76936645 | Msa0573670:intron | 15.0% |
| !! | ACTAGTACATTAAATAAAAT+CGG | - | chr4_1:76936904-76936923 | None:intergenic | 15.0% |
| !!! | AAATCAATAAAATTCTAAAG+AGG | + | chr4_1:76937161-76937180 | Msa0573670:intron | 15.0% |
| !!! | TAAATTCATTGATTTATACT+AGG | + | chr4_1:76937334-76937353 | Msa0573670:intron | 15.0% |
| !! | AAAAAAAAAGAAGATGAATA+TGG | - | chr4_1:76937861-76937880 | None:intergenic | 15.0% |
| !! | AGATAGATAGATATAAACTA+AGG | - | chr4_1:76933413-76933432 | None:intergenic | 20.0% |
| !!! | ATATATTTGATGATACTTAC+CGG | - | chr4_1:76933996-76934015 | None:intergenic | 20.0% |
| !! | GAACCTAATTATAATATCAA+TGG | + | chr4_1:76935126-76935145 | Msa0573670:CDS | 20.0% |
| !! | CTTCCATTGATATTATAATT+AGG | - | chr4_1:76935132-76935151 | None:intergenic | 20.0% |
| !! | AACTTTAATAATTTGACTCA+CGG | - | chr4_1:76936729-76936748 | None:intergenic | 20.0% |
| !!! | TAGATTTTTAAAAGAGAATG+AGG | + | chr4_1:76936797-76936816 | Msa0573670:intron | 20.0% |
| !! | ACCTATTTATTTATTTATCG+TGG | + | chr4_1:76936824-76936843 | Msa0573670:intron | 20.0% |
| !! | CTAGTACATTAAATAAAATC+GGG | - | chr4_1:76936903-76936922 | None:intergenic | 20.0% |
| !! | TAGTTCTCTTAAGTTAATAA+AGG | - | chr4_1:76937012-76937031 | None:intergenic | 20.0% |
| !!! | TTGTGAATTTTAACAAATCA+TGG | - | chr4_1:76937093-76937112 | None:intergenic | 20.0% |
| !! | GAAAAAAAATAGTGTTTGTT+CGG | + | chr4_1:76937127-76937146 | Msa0573670:intron | 20.0% |
| !! | AATAAAGATGAAGATGAAAA+TGG | - | chr4_1:76937771-76937790 | None:intergenic | 20.0% |
| !!! | TATTTTAAAGATCTAAAGAG+AGG | - | chr4_1:76937884-76937903 | None:intergenic | 20.0% |
| !! | CATGAAAAGAAGATTAATTA+GGG | - | chr4_1:76938260-76938279 | None:intergenic | 20.0% |
| !! | TCATGAAAAGAAGATTAATT+AGG | - | chr4_1:76938261-76938280 | None:intergenic | 20.0% |
| !!! | ATGTTGTCTTTTGTTTATTT+GGG | - | chr4_1:76938431-76938450 | None:intergenic | 20.0% |
| !! | AAAAAGAGCAAAAATAACTA+AGG | - | chr4_1:76938531-76938550 | None:intergenic | 20.0% |
| ! | TAGATAGATATAAACTAAGG+TGG | - | chr4_1:76933410-76933429 | None:intergenic | 25.0% |
| ! | GACTGAGAATATAAAAGAAA+TGG | - | chr4_1:76933570-76933589 | None:intergenic | 25.0% |
| !!! | TTATGTCACCATAGTTTTAA+AGG | - | chr4_1:76934058-76934077 | None:intergenic | 25.0% |
| ! | ACTATGGTGACATAATTTAA+TGG | + | chr4_1:76934063-76934082 | Msa0573670:intron | 25.0% |
| !! | TATAATCCCTTTTCTCATTT+AGG | + | chr4_1:76934090-76934109 | Msa0573670:intron | 25.0% |
| ! | GAATGAATTCATCAATCAAA+GGG | - | chr4_1:76934362-76934381 | None:intergenic | 25.0% |
| ! | AGAATGAATTCATCAATCAA+AGG | - | chr4_1:76934363-76934382 | None:intergenic | 25.0% |
| ! | ATGGTTAATGGTAAACAAAA+AGG | + | chr4_1:76934871-76934890 | Msa0573670:CDS | 25.0% |
| ! | TTGAATGTAACTATGTATGT+CGG | - | chr4_1:76935421-76935440 | None:intergenic | 25.0% |
| ! | TCAAACACTTACAAATACTT+TGG | - | chr4_1:76935495-76935514 | None:intergenic | 25.0% |
| ! | ACATGAAATGAGTTTAATGA+AGG | - | chr4_1:76935528-76935547 | None:intergenic | 25.0% |
| ! | AATAAAGCATAGCATTTGAT+TGG | + | chr4_1:76935640-76935659 | Msa0573670:intron | 25.0% |
| ! | AAAGAACATGCATGAAATTA+AGG | + | chr4_1:76935799-76935818 | Msa0573670:intron | 25.0% |
| ! | AAGAACATGCATGAAATTAA+GGG | + | chr4_1:76935800-76935819 | Msa0573670:intron | 25.0% |
| !! | GTCCATACAAATTAATTTTG+CGG | - | chr4_1:76935881-76935900 | None:intergenic | 25.0% |
| !! | AACATTTTCTTTTCTTAGCT+AGG | - | chr4_1:76935959-76935978 | None:intergenic | 25.0% |
| ! | TTGATACTATCATTATAGGT+TGG | + | chr4_1:76936044-76936063 | Msa0573670:intron | 25.0% |
| !! | CCTGAAAATTTTCATTTTGT+TGG | - | chr4_1:76936373-76936392 | None:intergenic | 25.0% |
| !! | CCAACAAAATGAAAATTTTC+AGG | + | chr4_1:76936370-76936389 | Msa0573670:CDS | 25.0% |
| ! | GCCACGATAAATAAATAAAT+AGG | - | chr4_1:76936828-76936847 | None:intergenic | 25.0% |
| ! | TAAAAGTTCTATCACGATTT+AGG | - | chr4_1:76936986-76937005 | None:intergenic | 25.0% |
| !!! | ACAAACACTATTTTTTTTCC+TGG | - | chr4_1:76937126-76937145 | None:intergenic | 25.0% |
| !!! | TTAAGTTGGTGCAAATTAAT+GGG | + | chr4_1:76937255-76937274 | Msa0573670:intron | 25.0% |
| ! | TCAATATGTTGAACCAAAAT+GGG | + | chr4_1:76937282-76937301 | Msa0573670:intron | 25.0% |
| !!! | TCATTGATTTATACTAGGAA+AGG | + | chr4_1:76937339-76937358 | Msa0573670:intron | 25.0% |
| !!! | TAGGAAAGGTTTTATATATG+TGG | + | chr4_1:76937353-76937372 | Msa0573670:intron | 25.0% |
| ! | ATGTATAATATGTATCCACA+TGG | + | chr4_1:76937484-76937503 | Msa0573670:intron | 25.0% |
| !!! | ATTTTTTACAAACAAGACCA+AGG | - | chr4_1:76938102-76938121 | None:intergenic | 25.0% |
| !!! | GATGTTGTCTTTTGTTTATT+TGG | - | chr4_1:76938432-76938451 | None:intergenic | 25.0% |
| ! | AAAAATATCTCAATATCGCT+TGG | - | chr4_1:76939123-76939142 | None:intergenic | 25.0% |
| CAGTGAGAGAAGAAAAATAA+AGG | - | chr4_1:76933327-76933346 | None:intergenic | 30.0% | |
| TTAAAGTAGAGAGCAAATTC+TGG | + | chr4_1:76933363-76933382 | Msa0573670:five_prime_UTR | 30.0% | |
| AAACTGTTAGAATAAGGTTG+AGG | - | chr4_1:76933444-76933463 | None:intergenic | 30.0% | |
| AGGAAGAAACTGTTAGAATA+AGG | - | chr4_1:76933450-76933469 | None:intergenic | 30.0% | |
| TCTAATATATCAAGCTCTTG+AGG | + | chr4_1:76933743-76933762 | Msa0573670:five_prime_UTR | 30.0% | |
| CTAATATATCAAGCTCTTGA+GGG | + | chr4_1:76933744-76933763 | Msa0573670:five_prime_UTR | 30.0% | |
| TAGCTACCTAAATGAGAAAA+GGG | - | chr4_1:76934099-76934118 | None:intergenic | 30.0% | |
| ATAGCTACCTAAATGAGAAA+AGG | - | chr4_1:76934100-76934119 | None:intergenic | 30.0% | |
| TAAAGGGAGAGAAATCAATA+AGG | - | chr4_1:76934193-76934212 | None:intergenic | 30.0% | |
| TGAATTTCAATGGAACTAAC+AGG | + | chr4_1:76934233-76934252 | Msa0573670:intron | 30.0% | |
| TCAATCAATTCTTGATCTGT+TGG | - | chr4_1:76934294-76934313 | None:intergenic | 30.0% | |
| TGAATTCATTCTCACTATTG+AGG | + | chr4_1:76934371-76934390 | Msa0573670:CDS | 30.0% | |
| GAATTCATTCTCACTATTGA+GGG | + | chr4_1:76934372-76934391 | Msa0573670:CDS | 30.0% | |
| ! | AATTAACCTGGAAGTTTTTC+AGG | - | chr4_1:76934423-76934442 | None:intergenic | 30.0% |
| AAGAAATAAACTTGAGCAAG+AGG | + | chr4_1:76934613-76934632 | Msa0573670:intron | 30.0% | |
| AGAAATAAACTTGAGCAAGA+GGG | + | chr4_1:76934614-76934633 | Msa0573670:intron | 30.0% | |
| CAAAGTTAGGTGACTTAATT+AGG | - | chr4_1:76934666-76934685 | None:intergenic | 30.0% | |
| !! | AAGTCACCTAACTTTGATTT+TGG | + | chr4_1:76934670-76934689 | Msa0573670:intron | 30.0% |
| TCATTGCCAAAATCAAAGTT+AGG | - | chr4_1:76934679-76934698 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAATGAATTTTC+AGG | + | chr4_1:76934685-76934704 | Msa0573670:intron | 30.0% |
| TGTTTACCATTAACCATAAC+AGG | - | chr4_1:76934868-76934887 | None:intergenic | 30.0% | |
| AATCTGAGTAACAATTTCCT+TGG | - | chr4_1:76935184-76935203 | None:intergenic | 30.0% | |
| !! | TTTAAGGTGTTGAATATCCA+AGG | - | chr4_1:76935268-76935287 | None:intergenic | 30.0% |
| CACCTTAAATCTGATCATTT+CGG | + | chr4_1:76935279-76935298 | Msa0573670:CDS | 30.0% | |
| !!! | CATCATAGCTTTTTCGAAAT+GGG | - | chr4_1:76935311-76935330 | None:intergenic | 30.0% |
| !!! | TCATCATAGCTTTTTCGAAA+TGG | - | chr4_1:76935312-76935331 | None:intergenic | 30.0% |
| ATTTCGAAAAAGCTATGATG+AGG | + | chr4_1:76935311-76935330 | Msa0573670:CDS | 30.0% | |
| ATGAAATTTCAACATTCGGT+TGG | + | chr4_1:76935748-76935767 | Msa0573670:intron | 30.0% | |
| ATGCATGAAATTAAGGGTTA+AGG | + | chr4_1:76935806-76935825 | Msa0573670:intron | 30.0% | |
| !! | CACCGCAAAATTAATTTGTA+TGG | + | chr4_1:76935876-76935895 | Msa0573670:intron | 30.0% |
| ! | TTTTCTTTTCTTAGCTAGGT+GGG | - | chr4_1:76935955-76935974 | None:intergenic | 30.0% |
| ! | ATTTTCTTTTCTTAGCTAGG+TGG | - | chr4_1:76935956-76935975 | None:intergenic | 30.0% |
| ! | CTATCATTATAGGTTGGAAT+AGG | + | chr4_1:76936050-76936069 | Msa0573670:intron | 30.0% |
| ! | ACTCATCGTTAAACTTTTTG+AGG | + | chr4_1:76936595-76936614 | Msa0573670:intron | 30.0% |
| !!! | TTTTTTTTCCTGGAAAGAAC+AGG | - | chr4_1:76937116-76937135 | None:intergenic | 30.0% |
| TTTACTCAACCAAATACATG+TGG | + | chr4_1:76937212-76937231 | Msa0573670:intron | 30.0% | |
| !! | CTTAAGTTGGTGCAAATTAA+TGG | + | chr4_1:76937254-76937273 | Msa0573670:intron | 30.0% |
| !!! | TTTTGGTTCAACATATTGAG+TGG | - | chr4_1:76937281-76937300 | None:intergenic | 30.0% |
| CTCAATATGTTGAACCAAAA+TGG | + | chr4_1:76937281-76937300 | Msa0573670:intron | 30.0% | |
| CAATATGTTGAACCAAAATG+GGG | + | chr4_1:76937283-76937302 | Msa0573670:intron | 30.0% | |
| !! | ACAGTTTCATGCTTGTTATT+TGG | - | chr4_1:76937382-76937401 | None:intergenic | 30.0% |
| ! | ATAGCTATTTCACACAAGAA+AGG | + | chr4_1:76938019-76938038 | Msa0573670:intron | 30.0% |
| !! | TCATGTATTTTTGCATTCCT+TGG | + | chr4_1:76938082-76938101 | Msa0573670:intron | 30.0% |
| GATATTCATTTCAAACTCTG+AGG | - | chr4_1:76938207-76938226 | None:intergenic | 30.0% | |
| ! | CATTCTAATCATGATGATGA+TGG | - | chr4_1:76938388-76938407 | None:intergenic | 30.0% |
| CATCATCATGATTAGAATGA+AGG | + | chr4_1:76938389-76938408 | Msa0573670:exon | 30.0% | |
| !!! | ATGATTACTTTGGCTTTTGT+TGG | - | chr4_1:76938499-76938518 | None:intergenic | 30.0% |
| GATGGATATGATGATTACTT+TGG | - | chr4_1:76938509-76938528 | None:intergenic | 30.0% | |
| AGAGCAAAAATAACTAAGGA+TGG | - | chr4_1:76938527-76938546 | None:intergenic | 30.0% | |
| !!! | GCTCTTTTTTCTTTCTTTTC+CGG | + | chr4_1:76938542-76938561 | Msa0573670:three_prime_UTR | 30.0% |
| TTTCCAATGAGAAAAATGAG+AGG | - | chr4_1:76938584-76938603 | None:intergenic | 30.0% | |
| AAGAAAGTGACAAAGAACAA+AGG | + | chr4_1:76938636-76938655 | Msa0573670:three_prime_UTR | 30.0% | |
| AGAAAGTGACAAAGAACAAA+GGG | + | chr4_1:76938637-76938656 | Msa0573670:three_prime_UTR | 30.0% | |
| TACAATATGCACAAACTCAA+TGG | - | chr4_1:76938974-76938993 | None:intergenic | 30.0% | |
| CATCAAAACAAGTTCATGAT+TGG | + | chr4_1:76939085-76939104 | Msa0573670:three_prime_UTR | 30.0% | |
| TCTCTACTTTAACTGACTGA+AGG | - | chr4_1:76933355-76933374 | None:intergenic | 35.0% | |
| !! | AACTAAGGTGGCTTTAAAGA+AGG | - | chr4_1:76933398-76933417 | None:intergenic | 35.0% |
| CTAGTATGCAGTTACTTACA+AGG | - | chr4_1:76933511-76933530 | None:intergenic | 35.0% | |
| TGAAGGTCTTCTTGTTGAAT+TGG | - | chr4_1:76933817-76933836 | None:intergenic | 35.0% | |
| TGATCTCATAGATTCTAAGC+TGG | + | chr4_1:76933905-76933924 | Msa0573670:CDS | 35.0% | |
| TGTGGACACAAATTTGATCA+AGG | + | chr4_1:76933966-76933985 | Msa0573670:CDS | 35.0% | |
| ATTCTTCTCTCAAATACTCG+TGG | + | chr4_1:76934014-76934033 | Msa0573670:intron | 35.0% | |
| !! | GCTGTGAACCTTTAAAACTA+TGG | + | chr4_1:76934047-76934066 | Msa0573670:intron | 35.0% |
| TTCAATGGAACTAACAGGAT+TGG | + | chr4_1:76934238-76934257 | Msa0573670:intron | 35.0% | |
| CATGTTCTTTGACTCAACTT+TGG | - | chr4_1:76934328-76934347 | None:intergenic | 35.0% | |
| ! | CTTTTTCCATAGACCATCAA+AGG | + | chr4_1:76934735-76934754 | Msa0573670:CDS | 35.0% |
| ! | TATATGCCTTTGATGGTCTA+TGG | - | chr4_1:76934744-76934763 | None:intergenic | 35.0% |
| CAACATGAAGAAGAGAAAGA+AGG | + | chr4_1:76934985-76935004 | Msa0573670:CDS | 35.0% | |
| ATCAATGGAAGAAGAGATAG+TGG | + | chr4_1:76935141-76935160 | Msa0573670:CDS | 35.0% | |
| !! | TGAAGCTTGTTAAAGGACTA+GGG | - | chr4_1:76935239-76935258 | None:intergenic | 35.0% |
| !! | GCATTTGTGAAGCTTGTTAA+AGG | - | chr4_1:76935246-76935265 | None:intergenic | 35.0% |
| AGCCGAAATGATCAGATTTA+AGG | - | chr4_1:76935284-76935303 | None:intergenic | 35.0% | |
| CATAGCATTTGATTGGAACA+TGG | + | chr4_1:76935647-76935666 | Msa0573670:intron | 35.0% | |
| !! | ACTGACACTGATTTATCATC+TGG | - | chr4_1:76935908-76935927 | None:intergenic | 35.0% |
| ! | TTATAGGTTGGAATAGGAGA+AGG | + | chr4_1:76936056-76936075 | Msa0573670:intron | 35.0% |
| ATAAGAGAAATGCAAGCATC+AGG | + | chr4_1:76936086-76936105 | Msa0573670:CDS | 35.0% | |
| AGAATTGTCATCAAGGATGA+TGG | - | chr4_1:76936327-76936346 | None:intergenic | 35.0% | |
| CATGGTAAGAATTGTCATCA+AGG | - | chr4_1:76936334-76936353 | None:intergenic | 35.0% | |
| TCGCTAGGAAAAAACTATAG+CGG | + | chr4_1:76936526-76936545 | Msa0573670:intron | 35.0% | |
| ! | ACTCACGGTTAAACATTTTG+AGG | - | chr4_1:76936714-76936733 | None:intergenic | 35.0% |
| TATCGTCATCGTTGATATTG+TGG | + | chr4_1:76936929-76936948 | Msa0573670:intron | 35.0% | |
| GTCTCACATCAAGTATATTG+AGG | - | chr4_1:76936964-76936983 | None:intergenic | 35.0% | |
| ! | ATAGTGTTTGTTCGGTTTTG+AGG | + | chr4_1:76937135-76937154 | Msa0573670:intron | 35.0% |
| TCTCACTTTCCACATGTATT+TGG | - | chr4_1:76937224-76937243 | None:intergenic | 35.0% | |
| AGAAAAGAGGTCTCTTAAGT+TGG | + | chr4_1:76937241-76937260 | Msa0573670:intron | 35.0% | |
| TGATTGTCAATTGTCATCGA+TGG | + | chr4_1:76937414-76937433 | Msa0573670:intron | 35.0% | |
| CAGCAACAACATCATAAACT+AGG | + | chr4_1:76937519-76937538 | Msa0573670:CDS | 35.0% | |
| CAACAACATCATAAACTAGG+TGG | + | chr4_1:76937522-76937541 | Msa0573670:CDS | 35.0% | |
| TTCTCATAATAATGCCCACT+AGG | + | chr4_1:76937667-76937686 | Msa0573670:intron | 35.0% | |
| TCTCATAATAATGCCCACTA+GGG | + | chr4_1:76937668-76937687 | Msa0573670:intron | 35.0% | |
| ! | ACTATGATGACGTGGAAAAA+AGG | + | chr4_1:76938140-76938159 | Msa0573670:intron | 35.0% |
| ACAATGCAATGGAAATTGAC+TGG | - | chr4_1:76938167-76938186 | None:intergenic | 35.0% | |
| GTACACAGAAAACAATGCAA+TGG | - | chr4_1:76938178-76938197 | None:intergenic | 35.0% | |
| !! | AGCTTCTTGTTGGTTTCTAA+TGG | - | chr4_1:76938315-76938334 | None:intergenic | 35.0% |
| GGTTGAAATACTCTTCTTAC+TGG | + | chr4_1:76938339-76938358 | Msa0573670:CDS | 35.0% | |
| ! | TTTTGTTGGAAAGTGAGTTG+AGG | - | chr4_1:76938485-76938504 | None:intergenic | 35.0% |
| ! | CTTTTCCGGTTTATGAACTT+CGG | + | chr4_1:76938556-76938575 | Msa0573670:three_prime_UTR | 35.0% |
| GAAAGTGACAAAGAACAAAG+GGG | + | chr4_1:76938638-76938657 | Msa0573670:three_prime_UTR | 35.0% | |
| CAGTAGAAACTTTGAGTCTT+AGG | - | chr4_1:76938775-76938794 | None:intergenic | 35.0% | |
| ACTTTAACTGACTGAAGGCA+AGG | - | chr4_1:76933350-76933369 | None:intergenic | 40.0% | |
| CTGTTAGAATAAGGTTGAGG+TGG | - | chr4_1:76933441-76933460 | None:intergenic | 40.0% | |
| ACAATGAACTGTGCAGGATA+AGG | - | chr4_1:76933541-76933560 | None:intergenic | 40.0% | |
| ATCCTGCACAGTTCATTGTA+TGG | + | chr4_1:76933542-76933561 | Msa0573670:intron | 40.0% | |
| ATCCATACAATGAACTGTGC+AGG | - | chr4_1:76933547-76933566 | None:intergenic | 40.0% | |
| TTGAGGGTGATTATGCTAAG+TGG | + | chr4_1:76933760-76933779 | Msa0573670:five_prime_UTR | 40.0% | |
| GTGATTATGCTAAGTGGTGT+TGG | + | chr4_1:76933766-76933785 | Msa0573670:five_prime_UTR | 40.0% | |
| CAAATTTGATCAAGGCAAGC+CGG | + | chr4_1:76933974-76933993 | Msa0573670:CDS | 40.0% | |
| !!! | ACCTGGAAGTTTTTCAGGAT+GGG | - | chr4_1:76934418-76934437 | None:intergenic | 40.0% |
| !!! | AACCTGGAAGTTTTTCAGGA+TGG | - | chr4_1:76934419-76934438 | None:intergenic | 40.0% |
| !! | TTTTCAGGAGTGACAAGAGA+TGG | + | chr4_1:76934700-76934719 | Msa0573670:intron | 40.0% |
| CCTGTTGTATATGCCTTTGA+TGG | - | chr4_1:76934751-76934770 | None:intergenic | 40.0% | |
| ! | CCATCAAAGGCATATACAAC+AGG | + | chr4_1:76934748-76934767 | Msa0573670:CDS | 40.0% |
| ATACAACAGGAACACGAAAG+AGG | + | chr4_1:76934761-76934780 | Msa0573670:CDS | 40.0% | |
| TCCTTGTAAGTCACACTCTT+CGG | - | chr4_1:76934800-76934819 | None:intergenic | 40.0% | |
| ! | TGTGACTTACAAGGAAGTAC+AGG | + | chr4_1:76934805-76934824 | Msa0573670:CDS | 40.0% |
| GAAACAAGATGGCACAAAAC+TGG | + | chr4_1:76934832-76934851 | Msa0573670:CDS | 40.0% | |
| ACCAGACCTGTTATGGTTAA+TGG | + | chr4_1:76934859-76934878 | Msa0573670:CDS | 40.0% | |
| ACCATTAACCATAACAGGTC+TGG | - | chr4_1:76934863-76934882 | None:intergenic | 40.0% | |
| CTTGTTCTCTACACCAACTT+CGG | + | chr4_1:76934907-76934926 | Msa0573670:CDS | 40.0% | |
| ! | TTTTCGATTCTTGCCGAAGT+TGG | - | chr4_1:76934923-76934942 | None:intergenic | 40.0% |
| AAAACCCGAGAAGACGAATT+GGG | + | chr4_1:76934939-76934958 | Msa0573670:CDS | 40.0% | |
| GTGATGCATCAATACCATCT+TGG | + | chr4_1:76934961-76934980 | Msa0573670:CDS | 40.0% | |
| CTTCTTCATGTTGTCCAAGA+TGG | - | chr4_1:76934978-76934997 | None:intergenic | 40.0% | |
| TCAGACCAATTACACTGTCT+TGG | - | chr4_1:76935048-76935067 | None:intergenic | 40.0% | |
| AGTGCAACAACAACAACAAC+TGG | + | chr4_1:76935087-76935106 | Msa0573670:CDS | 40.0% | |
| ACAACAACAACAACTGGTGA+AGG | + | chr4_1:76935093-76935112 | Msa0573670:CDS | 40.0% | |
| AAGTGGAAGTTCTTCTTCCA+AGG | + | chr4_1:76935164-76935183 | Msa0573670:CDS | 40.0% | |
| GATGAAATGTCTGCTGTTGT+TGG | + | chr4_1:76935210-76935229 | Msa0573670:CDS | 40.0% | |
| !! | GTGAAGCTTGTTAAAGGACT+AGG | - | chr4_1:76935240-76935259 | None:intergenic | 40.0% |
| AACAAGCTTCACAAATGCCT+TGG | + | chr4_1:76935248-76935267 | Msa0573670:CDS | 40.0% | |
| GTAACTATGTATGTCGGTGT+CGG | - | chr4_1:76935415-76935434 | None:intergenic | 40.0% | |
| !! | CACTGATTTATCATCTGGTC+AGG | - | chr4_1:76935903-76935922 | None:intergenic | 40.0% |
| ACGCAGCTTTCCATATAAGT+AGG | + | chr4_1:76936246-76936265 | Msa0573670:CDS | 40.0% | |
| GATTGGAAGGCCTACTTATA+TGG | - | chr4_1:76936259-76936278 | None:intergenic | 40.0% | |
| ! | ATTGTCATCAAGGATGATGG+TGG | - | chr4_1:76936324-76936343 | None:intergenic | 40.0% |
| GGAGCATGATTGTTGAAACA+TGG | - | chr4_1:76936352-76936371 | None:intergenic | 40.0% | |
| CGCTAGGAAAAAACTATAGC+GGG | + | chr4_1:76936527-76936546 | Msa0573670:intron | 40.0% | |
| ATTCACAACCTGTTCTTTCC+AGG | + | chr4_1:76937105-76937124 | Msa0573670:intron | 40.0% | |
| CATGTGGAAAGTGAGAAAAG+AGG | + | chr4_1:76937228-76937247 | Msa0573670:intron | 40.0% | |
| ! | ATGCACAATCAACCCCATTT+TGG | - | chr4_1:76937298-76937317 | None:intergenic | 40.0% |
| ! | AAAATGGGGTTGATTGTGCA+TGG | + | chr4_1:76937297-76937316 | Msa0573670:intron | 40.0% |
| CAACATCATAAACTAGGTGG+TGG | + | chr4_1:76937525-76937544 | Msa0573670:CDS | 40.0% | |
| !! | ATCATAAACTAGGTGGTGGA+AGG | + | chr4_1:76937529-76937548 | Msa0573670:CDS | 40.0% |
| ! | TGGTTTGGAGGAAGTCATTA+TGG | + | chr4_1:76937560-76937579 | Msa0573670:CDS | 40.0% |
| GGTTTGGAGGAAGTCATTAT+GGG | + | chr4_1:76937561-76937580 | Msa0573670:CDS | 40.0% | |
| GTTTGGAGGAAGTCATTATG+GGG | + | chr4_1:76937562-76937581 | Msa0573670:CDS | 40.0% | |
| AACGTCGTCTGATATCAAAG+AGG | + | chr4_1:76937593-76937612 | Msa0573670:CDS | 40.0% | |
| ! | CTCTTTTCTCTTTCCCTAGT+GGG | - | chr4_1:76937684-76937703 | None:intergenic | 40.0% |
| CACTAGGGAAAGAGAAAAGA+GGG | + | chr4_1:76937683-76937702 | Msa0573670:intron | 40.0% | |
| !! | AGCTTTTGACTATGATGACG+TGG | + | chr4_1:76938132-76938151 | Msa0573670:intron | 40.0% |
| ! | GATGATGGTTGTTGTCATGA+GGG | - | chr4_1:76938373-76938392 | None:intergenic | 40.0% |
| !! | TGATGATGGTTGTTGTCATG+AGG | - | chr4_1:76938374-76938393 | None:intergenic | 40.0% |
| ! | TTGGAAAGTGAGTTGAGGTA+TGG | - | chr4_1:76938480-76938499 | None:intergenic | 40.0% |
| !! | GTGCCTCTCATTTTTCTCAT+TGG | + | chr4_1:76938578-76938597 | Msa0573670:three_prime_UTR | 40.0% |
| GAAACACTAACTGTGTGCAA+CGG | + | chr4_1:76938600-76938619 | Msa0573670:three_prime_UTR | 40.0% | |
| AGTGTTTGGATCCACACAAC+TGG | - | chr4_1:76933938-76933957 | None:intergenic | 45.0% | |
| CAAATTTGTGTCCACAGCGA+GGG | - | chr4_1:76933962-76933981 | None:intergenic | 45.0% | |
| TCAAATTTGTGTCCACAGCG+AGG | - | chr4_1:76933963-76933982 | None:intergenic | 45.0% | |
| CTCTCAAATACTCGTGGTTG+CGG | + | chr4_1:76934020-76934039 | Msa0573670:intron | 45.0% | |
| !! | TGGAACTAACAGGATTGGCT+AGG | + | chr4_1:76934243-76934262 | Msa0573670:intron | 45.0% |
| GGATCAAATTTCACTCCTGC+TGG | - | chr4_1:76934273-76934292 | None:intergenic | 45.0% | |
| CTCACTATTGAGGGAGAAGA+TGG | + | chr4_1:76934381-76934400 | Msa0573670:CDS | 45.0% | |
| ACCCATCCTGAAAAACTTCC+AGG | + | chr4_1:76934414-76934433 | Msa0573670:CDS | 45.0% | |
| ! | ACCGAAGAGTGTGACTTACA+AGG | + | chr4_1:76934796-76934815 | Msa0573670:CDS | 45.0% |
| ! | GACTTACAAGGAAGTACAGG+AGG | + | chr4_1:76934808-76934827 | Msa0573670:CDS | 45.0% |
| GTACAGGAGGAGAAACAAGA+TGG | + | chr4_1:76934821-76934840 | Msa0573670:CDS | 45.0% | |
| TGGTAAGACCAGACCTGTTA+TGG | + | chr4_1:76934852-76934871 | Msa0573670:CDS | 45.0% | |
| GAAAACCCGAGAAGACGAAT+TGG | + | chr4_1:76934938-76934957 | Msa0573670:CDS | 45.0% | |
| ATCACCCAATTCGTCTTCTC+GGG | - | chr4_1:76934946-76934965 | None:intergenic | 45.0% | |
| CATCACCCAATTCGTCTTCT+CGG | - | chr4_1:76934947-76934966 | None:intergenic | 45.0% | |
| CACAGCCAAGACAGTGTAAT+TGG | + | chr4_1:76935040-76935059 | Msa0573670:CDS | 45.0% | |
| ACAACAACTGGTGAAGGAAG+TGG | + | chr4_1:76935099-76935118 | Msa0573670:CDS | 45.0% | |
| !! | GGAAGAAGAGATAGTGGAAG+TGG | + | chr4_1:76935147-76935166 | Msa0573670:CDS | 45.0% |
| AGTAGCTAGCTAACCAACGT+TGG | + | chr4_1:76935925-76935944 | Msa0573670:intron | 45.0% | |
| AGAGAAATGCAAGCATCAGG+AGG | + | chr4_1:76936089-76936108 | Msa0573670:CDS | 45.0% | |
| ! | ATAGTGGAGATGGGATTGGA+AGG | - | chr4_1:76936272-76936291 | None:intergenic | 45.0% |
| !! | GATGATAGTGGAGATGGGAT+TGG | - | chr4_1:76936276-76936295 | None:intergenic | 45.0% |
| !! | GGAGAGATGATAGTGGAGAT+GGG | - | chr4_1:76936281-76936300 | None:intergenic | 45.0% |
| !! | TGGAGAGATGATAGTGGAGA+TGG | - | chr4_1:76936282-76936301 | None:intergenic | 45.0% |
| ACAATTGCGATTGCATCGCT+AGG | + | chr4_1:76936511-76936530 | Msa0573670:intron | 45.0% | |
| ! | CCTCTTTTCTCTTTCCCTAG+TGG | - | chr4_1:76937685-76937704 | None:intergenic | 45.0% |
| CCACTAGGGAAAGAGAAAAG+AGG | + | chr4_1:76937682-76937701 | Msa0573670:intron | 45.0% | |
| GAAACCAACAAGAAGCTGAG+TGG | + | chr4_1:76938318-76938337 | Msa0573670:CDS | 45.0% | |
| TCAACCACTCAGCTTCTTGT+TGG | - | chr4_1:76938325-76938344 | None:intergenic | 45.0% | |
| !! | AGGCACCGAAGTTCATAAAC+CGG | - | chr4_1:76938564-76938583 | None:intergenic | 45.0% |
| ! | GTGTGCAACGGAACAAGTTT+TGG | + | chr4_1:76938612-76938631 | Msa0573670:three_prime_UTR | 45.0% |
| !!! | TCTTTTTTATAAATAAAAAT+TGG | + | chr4_1:76936869-76936888 | Msa0573670:intron | 5.0% |
| !!! | CTTTTTTATAAATAAAAATT+GGG | + | chr4_1:76936870-76936889 | Msa0573670:intron | 5.0% |
| !!! | TTTTTTATAAATAAAAATTG+GGG | + | chr4_1:76936871-76936890 | Msa0573670:intron | 5.0% |
| !! | AATAAATATAAATAATATGA+TGG | - | chr4_1:76938854-76938873 | None:intergenic | 5.0% |
| ACAACTGGTGAAGGAAGTGG+TGG | + | chr4_1:76935102-76935121 | Msa0573670:CDS | 50.0% | |
| !! | ATGTATGTCGGTGTCGGACA+TGG | - | chr4_1:76935409-76935428 | None:intergenic | 50.0% |
| CTAGGTGGGTAAACCAACGT+TGG | - | chr4_1:76935941-76935960 | None:intergenic | 50.0% | |
| ATCAGGAGGCTCATGTGATC+AGG | + | chr4_1:76936103-76936122 | Msa0573670:CDS | 50.0% | |
| CTGCGTTTGCACTAATCTGC+TGG | - | chr4_1:76936232-76936251 | None:intergenic | 50.0% | |
| !! | ATGGTGGATGTGTGATGGAG+GGG | - | chr4_1:76936308-76936327 | None:intergenic | 50.0% |
| !! | GATGGTGGATGTGTGATGGA+GGG | - | chr4_1:76936309-76936328 | None:intergenic | 50.0% |
| !! | TGATGGTGGATGTGTGATGG+AGG | - | chr4_1:76936310-76936329 | None:intergenic | 50.0% |
| !! | GGATGATGGTGGATGTGTGA+TGG | - | chr4_1:76936313-76936332 | None:intergenic | 50.0% |
| TTGTTGTCATGAGGGTCGAC+TGG | - | chr4_1:76938365-76938384 | None:intergenic | 50.0% | |
| TCCCTCGTGACATCACATTG+AGG | + | chr4_1:76938741-76938760 | Msa0573670:three_prime_UTR | 50.0% | |
| CCCTCAATGTGATGTCACGA+GGG | - | chr4_1:76938745-76938764 | None:intergenic | 50.0% | |
| CCCTCGTGACATCACATTGA+GGG | + | chr4_1:76938742-76938761 | Msa0573670:three_prime_UTR | 50.0% | |
| TCCCTCAATGTGATGTCACG+AGG | - | chr4_1:76938746-76938765 | None:intergenic | 50.0% | |
| !! | CTGGAAGAGCACCAGTTGTG+TGG | + | chr4_1:76933924-76933943 | Msa0573670:CDS | 55.0% |
| ! | GATTGGCTAGGTCTACCAGC+AGG | + | chr4_1:76934255-76934274 | Msa0573670:CDS | 55.0% |
| AGGAGGCTCATGTGATCAGG+AGG | + | chr4_1:76936106-76936125 | Msa0573670:CDS | 55.0% | |
| GGGAGGTGGAGAGATGATAG+TGG | - | chr4_1:76936288-76936307 | None:intergenic | 55.0% | |
| TGGAAGGTCTGCGTCTGGTT+TGG | + | chr4_1:76937545-76937564 | Msa0573670:CDS | 55.0% | |
| !! | AAGGTCTGCGTCTGGTTTGG+AGG | + | chr4_1:76937548-76937567 | Msa0573670:CDS | 55.0% |
| TCCAAACACTGCCCTCGCTG+TGG | + | chr4_1:76933948-76933967 | Msa0573670:CDS | 60.0% | |
| TCCACAGCGAGGGCAGTGTT+TGG | - | chr4_1:76933952-76933971 | None:intergenic | 60.0% | |
| ! | GATGTGTGATGGAGGGGAGG+TGG | - | chr4_1:76936302-76936321 | None:intergenic | 60.0% |
| ! | GTGGATGTGTGATGGAGGGG+AGG | - | chr4_1:76936305-76936324 | None:intergenic | 60.0% |
| CTGCTGCTGTTGCTGCCATG+TGG | - | chr4_1:76937502-76937521 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAAGGTCTGCGTC+TGG | + | chr4_1:76937540-76937559 | Msa0573670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 76933305 | 76939143 | 76933305 | ID=Msa0573670;Name=Msa0573670 |
| chr4_1 | mRNA | 76933305 | 76939143 | 76933305 | ID=Msa0573670-mRNA-1;Parent=Msa0573670;Name=Msa0573670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=358|1|1|1|0.83|0.71|7|740|488 |
| chr4_1 | exon | 76933305 | 76933511 | 76933305 | ID=Msa0573670-mRNA-1:exon:27002;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76933719 | 76933995 | 76933719 | ID=Msa0573670-mRNA-1:exon:27003;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76934255 | 76934435 | 76934255 | ID=Msa0573670-mRNA-1:exon:27004;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76934707 | 76935332 | 76934707 | ID=Msa0573670-mRNA-1:exon:27005;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76936062 | 76936391 | 76936062 | ID=Msa0573670-mRNA-1:exon:27006;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76937510 | 76937614 | 76937510 | ID=Msa0573670-mRNA-1:exon:27007;Parent=Msa0573670-mRNA-1 |
| chr4_1 | exon | 76938305 | 76939143 | 76938305 | ID=Msa0573670-mRNA-1:exon:27008;Parent=Msa0573670-mRNA-1 |
| chr4_1 | five_prime_UTR | 76933305 | 76933511 | 76933305 | ID=Msa0573670-mRNA-1:five_prime_utr;Parent=Msa0573670-mRNA-1 |
| chr4_1 | five_prime_UTR | 76933719 | 76933869 | 76933719 | ID=Msa0573670-mRNA-1:five_prime_utr;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76933870 | 76933995 | 76933870 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76934255 | 76934435 | 76934255 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76934707 | 76935332 | 76934707 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76936062 | 76936391 | 76936062 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76937510 | 76937614 | 76937510 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | CDS | 76938305 | 76938403 | 76938305 | ID=Msa0573670-mRNA-1:cds;Parent=Msa0573670-mRNA-1 |
| chr4_1 | three_prime_UTR | 76938404 | 76939143 | 76938404 | ID=Msa0573670-mRNA-1:three_prime_utr;Parent=Msa0573670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
