Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575520 | XP_003631070.2 | 94.490 | 363 | 20 | 0 | 1 | 363 | 1 | 363 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575520 | sp|Q8S9K7|PEX32_ARATH | 53.134 | 367 | 156 | 5 | 4 | 361 | 4 | 363 | 3.34e-135 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575520 | G7LD97 | 94.490 | 363 | 20 | 0 | 1 | 363 | 1 | 363 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0575270 | Msa0575520 | 0.835160 | 1.972242e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575520 | MtrunA17_Chr8g0392691 | 94.490 | 363 | 20 | 0 | 1 | 363 | 1 | 363 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575520 | AT1G48635.1 | 53.134 | 367 | 156 | 5 | 4 | 361 | 4 | 363 | 3.40e-136 | 392 |
| Msa0575520 | AT1G48635.2 | 49.005 | 402 | 155 | 6 | 4 | 361 | 4 | 399 | 4.48e-130 | 378 |
| Msa0575520 | AT3G18160.1 | 51.648 | 364 | 160 | 6 | 4 | 361 | 4 | 357 | 2.73e-129 | 375 |
| Msa0575520 | AT3G18160.3 | 51.397 | 358 | 158 | 6 | 10 | 361 | 28 | 375 | 8.26e-125 | 364 |
| Msa0575520 | AT3G18160.2 | 50.479 | 313 | 139 | 6 | 55 | 361 | 1 | 303 | 1.11e-103 | 308 |
Find 114 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAGAGAAACTACATTTA+TGG | 0.209134 | 4_1:-79411177 | Msa0575520:CDS |
| TATTGTTTGTATAAGCTTTA+TGG | 0.232407 | 4_1:-79411540 | Msa0575520:CDS |
| TAGCATGACGTTTCCTCTTT+TGG | 0.238509 | 4_1:-79406403 | Msa0575520:three_prime_UTR |
| CACGAATGGCATTGTCAGTT+TGG | 0.260565 | 4_1:-79410998 | Msa0575520:CDS |
| GGACGACCAGCAGAAATTTC+TGG | 0.297743 | 4_1:-79408834 | Msa0575520:CDS |
| GTTGTGTTCTTCGATTTATT+TGG | 0.319020 | 4_1:+79412007 | None:intergenic |
| TAATAATAATAATAGGAAAA+AGG | 0.325985 | 4_1:+79411847 | None:intergenic |
| TTCCTCTCCGTTGGTGTTGT+AGG | 0.326862 | 4_1:-79411570 | Msa0575520:CDS |
| ATTGGTTCTAACTTGACATT+TGG | 0.328733 | 4_1:-79406333 | Msa0575520:three_prime_UTR |
| CAATGGAACTGTGTCATTAC+TGG | 0.328752 | 4_1:+79407661 | None:intergenic |
| GAAGAAATAATAATAATAAT+AGG | 0.335011 | 4_1:+79411840 | None:intergenic |
| GGGGAGGAAGTAAGGGTGTT+TGG | 0.338091 | 4_1:+79411918 | None:intergenic |
| GGAAGTAAGGGTGTTTGGTT+TGG | 0.341729 | 4_1:+79411923 | None:intergenic |
| ATCAGAGAAACTACATTTAT+GGG | 0.343595 | 4_1:-79411176 | Msa0575520:CDS |
| AAACAAGTGGGGAGGAAGTA+AGG | 0.347570 | 4_1:+79411910 | None:intergenic |
| CTCTGATTGTGTTAAAGTGT+TGG | 0.359693 | 4_1:+79411192 | None:intergenic |
| GTAAGGGTGTTTGGTTTGGT+TGG | 0.382437 | 4_1:+79411927 | None:intergenic |
| TCTGATTGTGTTAAAGTGTT+GGG | 0.382501 | 4_1:+79411193 | None:intergenic |
| TTGGAGGAGCCAGGCCAGTT+AGG | 0.386798 | 4_1:-79406314 | Msa0575520:three_prime_UTR |
| TGTATATAAGCTAAGCATTA+CGG | 0.389185 | 4_1:+79410971 | None:intergenic |
| TTAAGTTGAGAATCACGATT+TGG | 0.392956 | 4_1:+79411818 | None:intergenic |
| TAAGGGTGTTTGGTTTGGTT+GGG | 0.393832 | 4_1:+79411928 | None:intergenic |
| GGTTCGAAAGAGATAGTTAT+AGG | 0.394057 | 4_1:-79406450 | Msa0575520:three_prime_UTR |
| AAGCAAACTAAAGTCCTAAC+TGG | 0.396022 | 4_1:+79406300 | None:intergenic |
| TTTCATAATGCTCGTGTCAT+TGG | 0.402048 | 4_1:-79406351 | Msa0575520:three_prime_UTR |
| GGATACTCTGCCCGAGCTCA+TGG | 0.411380 | 4_1:-79406738 | Msa0575520:CDS |
| ACGAATGGCATTGTCAGTTT+GGG | 0.414148 | 4_1:-79410997 | Msa0575520:CDS |
| GTTCGAATTCATTGCACAAA+AGG | 0.417366 | 4_1:-79406501 | Msa0575520:three_prime_UTR |
| ATAAGCTTTATGGTGCTCAT+AGG | 0.421013 | 4_1:-79411530 | Msa0575520:CDS |
| GGTTCTAACTTGACATTTGG+AGG | 0.430664 | 4_1:-79406330 | Msa0575520:three_prime_UTR |
| GATACTCTGCCCGAGCTCAT+GGG | 0.440816 | 4_1:-79406737 | Msa0575520:CDS |
| GCTTGCAGTCCCCATGAGCT+CGG | 0.452655 | 4_1:+79406727 | None:intergenic |
| CTCCTCCATGTCAGAAATCA+AGG | 0.455762 | 4_1:+79408775 | None:intergenic |
| GGGGACTGCAAGCGTGCCAC+TGG | 0.456864 | 4_1:-79406717 | Msa0575520:CDS |
| TACTGAACACTTTCATGAGC+AGG | 0.459817 | 4_1:-79407751 | Msa0575520:CDS |
| GATAGTGGAGACGTGGTTGA+TGG | 0.462000 | 4_1:-79408857 | Msa0575520:CDS |
| GACGACCAGCAGAAATTTCT+GGG | 0.467415 | 4_1:-79408833 | Msa0575520:CDS |
| GATCCAAGTCTTGTGCTATC+CGG | 0.471758 | 4_1:+79411257 | None:intergenic |
| CTTGCAGTCCCCATGAGCTC+GGG | 0.478006 | 4_1:+79406728 | None:intergenic |
| GTCATTACTGGCAAAGGTTG+TGG | 0.479857 | 4_1:+79407673 | None:intergenic |
| TTGCGATATGTGCAGGATAG+TGG | 0.480335 | 4_1:-79408872 | Msa0575520:intron |
| AAGGACACATCTGTGCAACT+TGG | 0.483385 | 4_1:+79406681 | None:intergenic |
| TCCGTTGGTGTTGTAGGAGG+TGG | 0.487315 | 4_1:-79411564 | Msa0575520:CDS |
| CACTTCCCAGAAATTTCTGC+TGG | 0.488319 | 4_1:+79408828 | None:intergenic |
| TGCTATGCTAAGAATCTAGT+AGG | 0.489240 | 4_1:+79412036 | None:intergenic |
| CTTCTTGAGAGGCTAATTCA+AGG | 0.497204 | 4_1:-79411226 | Msa0575520:CDS |
| TGTAGTTGAAACTCTGGTAG+TGG | 0.500259 | 4_1:+79411791 | None:intergenic |
| CTGCCGGATAGCACAAGACT+TGG | 0.500307 | 4_1:-79411260 | Msa0575520:CDS |
| GCCTGCCTTGATTTCTGACA+TGG | 0.501525 | 4_1:-79408780 | Msa0575520:CDS |
| ACTTGACATTTGGAGGAGCC+AGG | 0.506789 | 4_1:-79406323 | Msa0575520:three_prime_UTR |
| CTCGGTTCTTCTAGGAGCAA+AGG | 0.507255 | 4_1:+79406662 | None:intergenic |
| AAAGTTCAAGTCAATATACT+TGG | 0.507917 | 4_1:-79410948 | Msa0575520:CDS |
| AACTAAAGTCCTAACTGGCC+TGG | 0.508147 | 4_1:+79406305 | None:intergenic |
| CGTCATGCTATAAAAGATGA+AGG | 0.510521 | 4_1:+79406416 | None:intergenic |
| ATCTTTCTCACCTTCTTGAG+AGG | 0.512799 | 4_1:-79411237 | Msa0575520:CDS |
| CATTGTACAAAATTTAATTG+AGG | 0.513201 | 4_1:-79406471 | Msa0575520:three_prime_UTR |
| AACAAGTGGGGAGGAAGTAA+GGG | 0.515743 | 4_1:+79411911 | None:intergenic |
| GAATGTAATTTAGCATCCTC+AGG | 0.519076 | 4_1:+79407695 | None:intergenic |
| CGTCGTATTGTTGAAGAGAC+TGG | 0.519135 | 4_1:+79407796 | None:intergenic |
| GTGAGTGATTACACCAAAAG+AGG | 0.520131 | 4_1:+79406390 | None:intergenic |
| TAGATAAGAAAGAAACAAGT+GGG | 0.520332 | 4_1:+79411898 | None:intergenic |
| AGGACACATCTGTGCAACTT+GGG | 0.520478 | 4_1:+79406682 | None:intergenic |
| ATAGTGGAGACGTGGTTGAT+GGG | 0.524773 | 4_1:-79408856 | Msa0575520:CDS |
| TGAGAGGCTAATTCAAGGAA+AGG | 0.526338 | 4_1:-79411221 | Msa0575520:CDS |
| CAACAAAAGAAGTTCTCAAA+GGG | 0.529703 | 4_1:-79408751 | Msa0575520:intron |
| CTTGAATTAGCCTCTCAAGA+AGG | 0.529724 | 4_1:+79411227 | None:intergenic |
| CTCTCCGTTGGTGTTGTAGG+AGG | 0.533032 | 4_1:-79411567 | Msa0575520:CDS |
| TCTTATCTATGCGTTGCTTG+CGG | 0.534700 | 4_1:-79411884 | Msa0575520:five_prime_UTR |
| CTATGCACAACTTAAGCTGC+CGG | 0.543324 | 4_1:-79411276 | Msa0575520:CDS |
| TGGGGCAGTGCTCTCGCCAG+TGG | 0.547572 | 4_1:+79406701 | None:intergenic |
| TGAATTTGATCAACTCATGA+TGG | 0.549809 | 4_1:-79407630 | Msa0575520:CDS |
| GATATCTCTAAAAGCTGTGG+TGG | 0.550884 | 4_1:-79406759 | Msa0575520:CDS |
| CTTGATTTCTGACATGGAGG+AGG | 0.552441 | 4_1:-79408774 | Msa0575520:CDS |
| AAGACTTGATGCACTTGAGA+TGG | 0.560609 | 4_1:-79411505 | Msa0575520:CDS |
| CTGAACACTTTCATGAGCAG+GGG | 0.561820 | 4_1:-79407749 | Msa0575520:CDS |
| CAGTAATGACACAGTTCCAT+TGG | 0.562877 | 4_1:-79407660 | Msa0575520:CDS |
| TCAACTCATGATGGAAGCAC+AGG | 0.567240 | 4_1:-79407621 | Msa0575520:CDS |
| AGTTGAAACTCTGGTAGTGG+TGG | 0.569170 | 4_1:+79411794 | None:intergenic |
| CTTAAGTTGTGCATAGAATG+AGG | 0.571298 | 4_1:+79411283 | None:intergenic |
| ATTTCTGGAGACGGCATAGG+AGG | 0.571356 | 4_1:-79411599 | Msa0575520:CDS |
| TTCAAGTCAATATACTTGGA+AGG | 0.572385 | 4_1:-79410944 | Msa0575520:CDS |
| ACTAATCATCACTATGCACT+TGG | 0.576673 | 4_1:+79406563 | None:intergenic |
| TCAAATTCAGTCATATCCAA+TGG | 0.577987 | 4_1:+79407644 | None:intergenic |
| GGGATTTCTGGAGACGGCAT+AGG | 0.578873 | 4_1:-79411602 | Msa0575520:CDS |
| AAGCACAGGCAGTATTATCA+AGG | 0.579337 | 4_1:-79407607 | Msa0575520:intron |
| CCACACTGTATACGTTGGCA+AGG | 0.582185 | 4_1:-79406274 | Msa0575520:three_prime_UTR |
| GAGAGGCTAATTCAAGGAAA+GGG | 0.582214 | 4_1:-79411220 | Msa0575520:CDS |
| TCCATGTCAGAAATCAAGGC+AGG | 0.583710 | 4_1:+79408779 | None:intergenic |
| AGTGTTCAGTATATTTGTGA+TGG | 0.585228 | 4_1:+79407763 | None:intergenic |
| GCAACAAAAGAAGTTCTCAA+AGG | 0.586356 | 4_1:-79408752 | Msa0575520:CDS |
| ACTGAACACTTTCATGAGCA+GGG | 0.589996 | 4_1:-79407750 | Msa0575520:CDS |
| AACTGTGTCATTACTGGCAA+AGG | 0.595267 | 4_1:+79407667 | None:intergenic |
| TAAGAAAGAAACAAGTGGGG+AGG | 0.595619 | 4_1:+79411902 | None:intergenic |
| ATACTCTGCCCGAGCTCATG+GGG | 0.602228 | 4_1:-79406736 | Msa0575520:CDS |
| TTTCAAGGGATTTCTGGAGA+CGG | 0.608435 | 4_1:-79411608 | Msa0575520:intron |
| TGCCTTGATTTCTGACATGG+AGG | 0.610146 | 4_1:-79408777 | Msa0575520:CDS |
| CACTTGGCATATTTGCGTAG+AGG | 0.611504 | 4_1:+79406579 | None:intergenic |
| TTTATCCACACTGTATACGT+TGG | 0.612798 | 4_1:-79406279 | Msa0575520:three_prime_UTR |
| TAGTGGAGACGTGGTTGATG+GGG | 0.623409 | 4_1:-79408855 | Msa0575520:CDS |
| GATTCTGAAAGCTCAATCAA+AGG | 0.626972 | 4_1:-79411965 | Msa0575520:five_prime_UTR |
| GGACACATCTGTGCAACTTG+GGG | 0.628008 | 4_1:+79406683 | None:intergenic |
| CACACTGTATACGTTGGCAA+GGG | 0.633524 | 4_1:-79406273 | Msa0575520:three_prime_UTR |
| AGAGCTTTCAAGGCTTCGTG+CGG | 0.639005 | 4_1:+79410905 | None:intergenic |
| GCCACCTCCTACAACACCAA+CGG | 0.647065 | 4_1:+79411563 | None:intergenic |
| ATAGATAAGAAAGAAACAAG+TGG | 0.648786 | 4_1:+79411897 | None:intergenic |
| AGAGATATCTCTAAAAGCTG+TGG | 0.659917 | 4_1:-79406762 | Msa0575520:CDS |
| CTCCTACAACACCAACGGAG+AGG | 0.670807 | 4_1:+79411568 | None:intergenic |
| TGAACACTTTCATGAGCAGG+GGG | 0.679803 | 4_1:-79407748 | Msa0575520:CDS |
| CCTTGCCAACGTATACAGTG+TGG | 0.680586 | 4_1:+79406274 | None:intergenic |
| GTTGAAACTCTGGTAGTGGT+GGG | 0.683582 | 4_1:+79411795 | None:intergenic |
| TCAGAGAAACTACATTTATG+GGG | 0.688809 | 4_1:-79411175 | Msa0575520:CDS |
| GGTAAAATATATGATACCTG+AGG | 0.693885 | 4_1:-79407711 | Msa0575520:CDS |
| AGATAAGAAAGAAACAAGTG+GGG | 0.733659 | 4_1:+79411899 | None:intergenic |
| TGTGCAGGATAGTGGAGACG+TGG | 0.754505 | 4_1:-79408864 | Msa0575520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAGGAAAA+AGG | + | chr4_1:79406438-79406457 | None:intergenic | 10.0% |
| !! | GAAGAAATAATAATAATAAT+AGG | + | chr4_1:79406445-79406464 | None:intergenic | 10.0% |
| !! | TAATAATAATATATTTGTGT+CGG | + | chr4_1:79410897-79410916 | None:intergenic | 10.0% |
| !!! | TTAGTATATATTTTCTTAAT+TGG | - | chr4_1:79411230-79411249 | Msa0575520:CDS | 10.0% |
| !! | ATATGAAATGACATAAAAAA+TGG | - | chr4_1:79407873-79407892 | Msa0575520:intron | 15.0% |
| !! | TAGATTTAAAGAGAATATAT+AGG | + | chr4_1:79408444-79408463 | None:intergenic | 15.0% |
| !! | AAGAGAAAAAATAAACTTTA+AGG | + | chr4_1:79409385-79409404 | None:intergenic | 15.0% |
| !! | GGAAAACTATAAAAAAAAAT+AGG | - | chr4_1:79411152-79411171 | Msa0575520:intron | 15.0% |
| !! | TAAGAAAATATATACTAACA+TGG | + | chr4_1:79411228-79411247 | None:intergenic | 15.0% |
| !! | TATTGTTTGTATAAGCTTTA+TGG | - | chr4_1:79406742-79406761 | Msa0575520:CDS | 20.0% |
| !! | TTAAAAAATTAGAGCTTTCA+AGG | + | chr4_1:79407390-79407409 | None:intergenic | 20.0% |
| !!! | TGAAAGCTCTAATTTTTTAA+TGG | - | chr4_1:79407390-79407409 | Msa0575520:intron | 20.0% |
| !!! | GGATGTTTTATATGATATAT+GGG | + | chr4_1:79407567-79407586 | None:intergenic | 20.0% |
| !!! | TGGATGTTTTATATGATATA+TGG | + | chr4_1:79407568-79407587 | None:intergenic | 20.0% |
| !!! | TTTTATTGAATATATCTCAG+AGG | + | chr4_1:79408312-79408331 | None:intergenic | 20.0% |
| !! | AATCATTAAAAATCTTGTCT+TGG | - | chr4_1:79409608-79409627 | Msa0575520:intron | 20.0% |
| !!! | ATCTTAATTGTGAATAGTTT+TGG | - | chr4_1:79409645-79409664 | Msa0575520:intron | 20.0% |
| !!! | ATTTTTATTATAAACCTACC+TGG | - | chr4_1:79409818-79409837 | Msa0575520:intron | 20.0% |
| !! | ATTGTTAAATTGAAGTTCTT+TGG | - | chr4_1:79410075-79410094 | Msa0575520:intron | 20.0% |
| !! | ATCTACAAAAGTTATTAAAC+AGG | - | chr4_1:79410188-79410207 | Msa0575520:intron | 20.0% |
| !!! | TATCAATGGAACTTTTAATT+CGG | - | chr4_1:79410244-79410263 | Msa0575520:intron | 20.0% |
| !!! | ACAGAATATGTCTTTTTAAA+CGG | - | chr4_1:79410293-79410312 | Msa0575520:intron | 20.0% |
| !! | GATTAAGACTCAATTTAAAT+TGG | - | chr4_1:79410429-79410448 | Msa0575520:intron | 20.0% |
| !!! | AAGGTATTTTTTGTTTGTTT+TGG | - | chr4_1:79410694-79410713 | Msa0575520:intron | 20.0% |
| !! | ACTTAAATTGTTTATCCAAT+CGG | - | chr4_1:79411048-79411067 | Msa0575520:intron | 20.0% |
| !!! | ATATATTTTGTGCTGTTTAT+TGG | + | chr4_1:79411101-79411120 | None:intergenic | 20.0% |
| !! | CATTGTACAAAATTTAATTG+AGG | - | chr4_1:79411811-79411830 | Msa0575520:five_prime_UTR | 20.0% |
| ! | TAGATAAGAAAGAAACAAGT+GGG | + | chr4_1:79406387-79406406 | None:intergenic | 25.0% |
| ! | ATAGATAAGAAAGAAACAAG+TGG | + | chr4_1:79406388-79406407 | None:intergenic | 25.0% |
| ! | TAATAATAGGAAAAAGGCTT+TGG | + | chr4_1:79406432-79406451 | None:intergenic | 25.0% |
| !!! | TATGCATTCTTTTGTTTTCA+AGG | - | chr4_1:79406659-79406678 | Msa0575520:CDS | 25.0% |
| !!! | ATGCATTCTTTTGTTTTCAA+GGG | - | chr4_1:79406660-79406679 | Msa0575520:CDS | 25.0% |
| ! | TTTATAAACAAAAAGACAGG+AGG | + | chr4_1:79406876-79406895 | None:intergenic | 25.0% |
| !! | GCTTTTATAAACAAAAAGAC+AGG | + | chr4_1:79406879-79406898 | None:intergenic | 25.0% |
| ! | ATAAAAGCAACAAATGTTGA+TGG | - | chr4_1:79406891-79406910 | Msa0575520:intron | 25.0% |
| ! | AATCAGAGAAACTACATTTA+TGG | - | chr4_1:79407105-79407124 | Msa0575520:intron | 25.0% |
| ! | ATCAGAGAAACTACATTTAT+GGG | - | chr4_1:79407106-79407125 | Msa0575520:intron | 25.0% |
| ! | TGTATATAAGCTAAGCATTA+CGG | + | chr4_1:79407314-79407333 | None:intergenic | 25.0% |
| ! | AAAGTTCAAGTCAATATACT+TGG | - | chr4_1:79407334-79407353 | Msa0575520:intron | 25.0% |
| ! | TCACATTGAATAATCATAAG+AGG | + | chr4_1:79407436-79407455 | None:intergenic | 25.0% |
| !!! | ACCATTTTTCTATTCTTTTG+CGG | - | chr4_1:79407457-79407476 | Msa0575520:intron | 25.0% |
| ! | GTGTCATAATAAAGTGTATT+TGG | + | chr4_1:79407588-79407607 | None:intergenic | 25.0% |
| ! | GAATGAAATAGAATCTGTTA+GGG | - | chr4_1:79407722-79407741 | Msa0575520:CDS | 25.0% |
| ! | AATGAAATAGAATCTGTTAG+GGG | - | chr4_1:79407723-79407742 | Msa0575520:CDS | 25.0% |
| !! | TCCTTTTCAATTAAGATTAC+AGG | - | chr4_1:79407915-79407934 | Msa0575520:intron | 25.0% |
| !! | CCTTTTCAATTAAGATTACA+GGG | - | chr4_1:79407916-79407935 | Msa0575520:intron | 25.0% |
| !! | CTTTTCAATTAAGATTACAG+GGG | - | chr4_1:79407917-79407936 | Msa0575520:intron | 25.0% |
| !! | TTTTCAATTAAGATTACAGG+GGG | - | chr4_1:79407918-79407937 | Msa0575520:intron | 25.0% |
| ! | AATAAAAGATGATAGGCTAT+TGG | - | chr4_1:79407941-79407960 | Msa0575520:intron | 25.0% |
| !! | CTGTCTTTGTATTTTCATTT+AGG | - | chr4_1:79408205-79408224 | Msa0575520:intron | 25.0% |
| ! | ATATTTGTACACTACAACAA+AGG | + | chr4_1:79408242-79408261 | None:intergenic | 25.0% |
| ! | AAGATTATTTATGTACCAGA+TGG | + | chr4_1:79408265-79408284 | None:intergenic | 25.0% |
| ! | TCATATTAGTATCAATGAAG+AGG | - | chr4_1:79408284-79408303 | Msa0575520:intron | 25.0% |
| ! | CATATTAGTATCAATGAAGA+GGG | - | chr4_1:79408285-79408304 | Msa0575520:intron | 25.0% |
| ! | TCAATAAAACAAACTAGTTC+AGG | - | chr4_1:79408323-79408342 | Msa0575520:intron | 25.0% |
| !!! | AGTGCATAGTTTTTTTTTTC+TGG | + | chr4_1:79408626-79408645 | None:intergenic | 25.0% |
| !! | CATCTTATTACAATTTTCTC+TGG | - | chr4_1:79408895-79408914 | Msa0575520:intron | 25.0% |
| !! | TATGATTACTGACATTTTTG+TGG | - | chr4_1:79408934-79408953 | Msa0575520:intron | 25.0% |
| ! | TTACTATTTACAAAAACCTC+TGG | - | chr4_1:79408977-79408996 | Msa0575520:intron | 25.0% |
| ! | TCAATATATTCACCCATAAT+CGG | + | chr4_1:79409059-79409078 | None:intergenic | 25.0% |
| !!! | AACTTTAAGGTTCAATAATG+TGG | + | chr4_1:79409372-79409391 | None:intergenic | 25.0% |
| ! | ATCAAGTTTATTAACTATCC+AGG | + | chr4_1:79409839-79409858 | None:intergenic | 25.0% |
| ! | CATAACTATACTCAATAGTT+AGG | + | chr4_1:79410012-79410031 | None:intergenic | 25.0% |
| ! | AGAATACGTATTAGTATCAA+TGG | - | chr4_1:79410230-79410249 | Msa0575520:intron | 25.0% |
| ! | AACACATATTTGTAAACACA+CGG | - | chr4_1:79410345-79410364 | Msa0575520:intron | 25.0% |
| !! | TATATTTTACCCAGAAATGT+GGG | + | chr4_1:79410562-79410581 | None:intergenic | 25.0% |
| !! | ATATATTTTACCCAGAAATG+TGG | + | chr4_1:79410563-79410582 | None:intergenic | 25.0% |
| ! | ATTGCTTATATTCAAACTGT+TGG | - | chr4_1:79410868-79410887 | Msa0575520:intron | 25.0% |
| ! | TATACACAAGCAATTACTAT+AGG | - | chr4_1:79411004-79411023 | Msa0575520:CDS | 25.0% |
| ! | CTTAAATTGTTTATCCAATC+GGG | - | chr4_1:79411049-79411068 | Msa0575520:intron | 25.0% |
| ! | CAGCACAAAATATATAAGTA+TGG | - | chr4_1:79411106-79411125 | Msa0575520:intron | 25.0% |
| !! | TATAGTTTTCCTGCATAAAT+TGG | + | chr4_1:79411143-79411162 | None:intergenic | 25.0% |
| ! | TACATAATATAATTGCTGAG+TGG | + | chr4_1:79411345-79411364 | None:intergenic | 25.0% |
| !!! | CTGGTATATTTTTAAGGATT+TGG | + | chr4_1:79411661-79411680 | None:intergenic | 25.0% |
| ! | AATCCTTAAAAATATACCAG+AGG | - | chr4_1:79411661-79411680 | Msa0575520:intron | 25.0% |
| !! | TATCATCGCTTCAATTTTAT+TGG | - | chr4_1:79412043-79412062 | Msa0575520:five_prime_UTR | 25.0% |
| !! | ATTTTATTGGATGATCTTGA+AGG | - | chr4_1:79412056-79412075 | Msa0575520:five_prime_UTR | 25.0% |
| !! | TTTTATTGGATGATCTTGAA+GGG | - | chr4_1:79412057-79412076 | Msa0575520:five_prime_UTR | 25.0% |
| GTTGTGTTCTTCGATTTATT+TGG | + | chr4_1:79406278-79406297 | None:intergenic | 30.0% | |
| AGATAAGAAAGAAACAAGTG+GGG | + | chr4_1:79406386-79406405 | None:intergenic | 30.0% | |
| !! | TTAAGTTGAGAATCACGATT+TGG | + | chr4_1:79406467-79406486 | None:intergenic | 30.0% |
| ! | CATTTTTGTAGTTGAAACTC+TGG | + | chr4_1:79406500-79406519 | None:intergenic | 30.0% |
| CAACATTAAACCAAAGTTGT+TGG | + | chr4_1:79406543-79406562 | None:intergenic | 30.0% | |
| !! | CTTTTATCGCTTTTACAACA+TGG | - | chr4_1:79406606-79406625 | Msa0575520:CDS | 30.0% |
| !!! | TTTTGTTTTCAAGGGATTTC+TGG | - | chr4_1:79406668-79406687 | Msa0575520:CDS | 30.0% |
| TAGTGAATTGCGAAAAACAA+AGG | + | chr4_1:79406921-79406940 | None:intergenic | 30.0% | |
| ! | TTTTCGCAATTCACTATGAT+AGG | - | chr4_1:79406925-79406944 | Msa0575520:intron | 30.0% |
| ! | TCTGATTGTGTTAAAGTGTT+GGG | + | chr4_1:79407092-79407111 | None:intergenic | 30.0% |
| TCAGAGAAACTACATTTATG+GGG | - | chr4_1:79407107-79407126 | Msa0575520:intron | 30.0% | |
| TTCAAGTCAATATACTTGGA+AGG | - | chr4_1:79407338-79407357 | Msa0575520:intron | 30.0% | |
| AATCATAAGAGGAAGAAAGA+TGG | + | chr4_1:79407425-79407444 | None:intergenic | 30.0% | |
| ACCGCAAAAGAATAGAAAAA+TGG | + | chr4_1:79407461-79407480 | None:intergenic | 30.0% | |
| TTATATGATATATGGGTTCC+TGG | + | chr4_1:79407560-79407579 | None:intergenic | 30.0% | |
| ATTATGACACATTTCTGCAA+AGG | - | chr4_1:79407598-79407617 | Msa0575520:intron | 30.0% | |
| TTAGATTAACACCCTATTTG+AGG | - | chr4_1:79407658-79407677 | Msa0575520:CDS | 30.0% | |
| GGAATGAAATAGAATCTGTT+AGG | - | chr4_1:79407721-79407740 | Msa0575520:CDS | 30.0% | |
| ATGAAATAGAATCTGTTAGG+GGG | - | chr4_1:79407724-79407743 | Msa0575520:CDS | 30.0% | |
| CCCTGTAATCTTAATTGAAA+AGG | + | chr4_1:79407919-79407938 | None:intergenic | 30.0% | |
| ATAAAACAAACTAGTTCAGG+TGG | - | chr4_1:79408326-79408345 | Msa0575520:intron | 30.0% | |
| GGACATGACTTAATTCTTTA+GGG | + | chr4_1:79408517-79408536 | None:intergenic | 30.0% | |
| ! | AATATGTACTTGTGTTTCTG+TGG | + | chr4_1:79408677-79408696 | None:intergenic | 30.0% |
| ! | CTGACATTTTTGTGGATTTA+AGG | - | chr4_1:79408942-79408961 | Msa0575520:intron | 30.0% |
| ATTTACAAAAACCTCTGGTT+TGG | - | chr4_1:79408982-79409001 | Msa0575520:intron | 30.0% | |
| AATAGTAATGAGTGAGATTC+AGG | - | chr4_1:79409133-79409152 | Msa0575520:intron | 30.0% | |
| AAGCTTTCCAATCAAACTAT+AGG | - | chr4_1:79409245-79409264 | Msa0575520:intron | 30.0% | |
| AGCTTTCCAATCAAACTATA+GGG | - | chr4_1:79409246-79409265 | Msa0575520:intron | 30.0% | |
| ACATTGAAGTTGAACAAGTA+TGG | + | chr4_1:79409317-79409336 | None:intergenic | 30.0% | |
| ! | CATGTCATATGCAAATTTTG+TGG | + | chr4_1:79409349-79409368 | None:intergenic | 30.0% |
| CAACAAAAGAAGTTCTCAAA+GGG | - | chr4_1:79409531-79409550 | Msa0575520:intron | 30.0% | |
| ! | ACTGACAATTTTATGCACAT+TGG | + | chr4_1:79409692-79409711 | None:intergenic | 30.0% |
| AAAAGAATTGGAAGCTATCT+GGG | + | chr4_1:79409782-79409801 | None:intergenic | 30.0% | |
| ! | AGATAGCTTCCAATTCTTTT+CGG | - | chr4_1:79409782-79409801 | Msa0575520:intron | 30.0% |
| ACAGTTAAACCGAAAAGAAT+TGG | + | chr4_1:79409794-79409813 | None:intergenic | 30.0% | |
| AGTTTATTAACTATCCAGGT+AGG | + | chr4_1:79409835-79409854 | None:intergenic | 30.0% | |
| ACTATACTCAATAGTTAGGT+GGG | + | chr4_1:79410008-79410027 | None:intergenic | 30.0% | |
| AACTATACTCAATAGTTAGG+TGG | + | chr4_1:79410009-79410028 | None:intergenic | 30.0% | |
| GACATATAGAGAGCAAAAAA+CGG | - | chr4_1:79410367-79410386 | Msa0575520:intron | 30.0% | |
| AGTGTTCAGTATATTTGTGA+TGG | + | chr4_1:79410522-79410541 | None:intergenic | 30.0% | |
| GGTAAAATATATGATACCTG+AGG | - | chr4_1:79410571-79410590 | Msa0575520:intron | 30.0% | |
| TCAAATTCAGTCATATCCAA+TGG | + | chr4_1:79410641-79410660 | None:intergenic | 30.0% | |
| TGAATTTGATCAACTCATGA+TGG | - | chr4_1:79410652-79410671 | Msa0575520:intron | 30.0% | |
| !!! | TTTGTTTGTTTTGGATGCAT+TGG | - | chr4_1:79410703-79410722 | Msa0575520:intron | 30.0% |
| TTCATGCACATTATTGTTAC+AGG | + | chr4_1:79410759-79410778 | None:intergenic | 30.0% | |
| !!! | ATTTTGTGCTGTTTATTGGT+CGG | + | chr4_1:79411097-79411116 | None:intergenic | 30.0% |
| CTTAATTGGACATCAAAATG+AGG | - | chr4_1:79411244-79411263 | Msa0575520:CDS | 30.0% | |
| AGTGGAATAACATGTATTAG+TGG | + | chr4_1:79411327-79411346 | None:intergenic | 30.0% | |
| AAATTCAGCACTGCAAAAAA+AGG | + | chr4_1:79411489-79411508 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGCAGTGCTGAATT+TGG | - | chr4_1:79411488-79411507 | Msa0575520:CDS | 30.0% |
| !!! | TTTTTTGCAGTGCTGAATTT+GGG | - | chr4_1:79411489-79411508 | Msa0575520:CDS | 30.0% |
| !! | TGGATGAACTGATTTTTACT+CGG | + | chr4_1:79411641-79411660 | None:intergenic | 30.0% |
| !! | CAACCTCTGGTATATTTTTA+AGG | + | chr4_1:79411667-79411686 | None:intergenic | 30.0% |
| ! | TGCAATGAATTCGAACTTTT+TGG | + | chr4_1:79411777-79411796 | None:intergenic | 30.0% |
| !! | ATTGGTTCTAACTTGACATT+TGG | - | chr4_1:79411949-79411968 | Msa0575520:five_prime_UTR | 30.0% |
| TGCTATGCTAAGAATCTAGT+AGG | + | chr4_1:79406249-79406268 | None:intergenic | 35.0% | |
| ! | GATTCTGAAAGCTCAATCAA+AGG | - | chr4_1:79406317-79406336 | Msa0575520:three_prime_UTR | 35.0% |
| CTACAAAAATGTTCTCTGTC+AGG | - | chr4_1:79406509-79406528 | Msa0575520:three_prime_UTR | 35.0% | |
| GGTAAATTCTCCAACAACTT+TGG | - | chr4_1:79406530-79406549 | Msa0575520:three_prime_UTR | 35.0% | |
| ! | ATAAGCTTTATGGTGCTCAT+AGG | - | chr4_1:79406752-79406771 | Msa0575520:CDS | 35.0% |
| ACAGGAGGAAGAATTGAAAT+TGG | + | chr4_1:79406861-79406880 | None:intergenic | 35.0% | |
| ! | CTTAAGTTGTGCATAGAATG+AGG | + | chr4_1:79407002-79407021 | None:intergenic | 35.0% |
| CTCTGATTGTGTTAAAGTGT+TGG | + | chr4_1:79407093-79407112 | None:intergenic | 35.0% | |
| ! | GAAGCGAAAGGCATAATAAA+GGG | + | chr4_1:79407170-79407189 | None:intergenic | 35.0% |
| GCTCGCTGTTATAATCAATA+CGG | - | chr4_1:79407212-79407231 | Msa0575520:intron | 35.0% | |
| TCGAGTATACTATTAGTACC+AGG | - | chr4_1:79407539-79407558 | Msa0575520:intron | 35.0% | |
| ATTTCTGCAAAGGTTACTGT+AGG | - | chr4_1:79407608-79407627 | Msa0575520:CDS | 35.0% | |
| AAAGGTTACTGTAGGTAGAA+AGG | - | chr4_1:79407616-79407635 | Msa0575520:CDS | 35.0% | |
| TCACAGTGTATCCTCAAATA+GGG | + | chr4_1:79407672-79407691 | None:intergenic | 35.0% | |
| ATCACAGTGTATCCTCAAAT+AGG | + | chr4_1:79407673-79407692 | None:intergenic | 35.0% | |
| TCGGTCTGGTAAAAAAATAG+TGG | - | chr4_1:79407762-79407781 | Msa0575520:CDS | 35.0% | |
| CTGATTGAATATGCAGTGTT+TGG | - | chr4_1:79407827-79407846 | Msa0575520:intron | 35.0% | |
| GCAGTGTTTGGTAAAATTAG+TGG | - | chr4_1:79407839-79407858 | Msa0575520:intron | 35.0% | |
| ATAAGCTCATGAGTAAGTGA+CGG | - | chr4_1:79408029-79408048 | Msa0575520:intron | 35.0% | |
| CCCATACTTTCAAGAGATTT+CGG | + | chr4_1:79408185-79408204 | None:intergenic | 35.0% | |
| ! | CCGAAATCTCTTGAAAGTAT+GGG | - | chr4_1:79408182-79408201 | Msa0575520:intron | 35.0% |
| GTAGTGTACAAATATCCATC+TGG | - | chr4_1:79408247-79408266 | Msa0575520:intron | 35.0% | |
| GAATATATAGGAGAGAGAGA+GGG | + | chr4_1:79408432-79408451 | None:intergenic | 35.0% | |
| AGAATATATAGGAGAGAGAG+AGG | + | chr4_1:79408433-79408452 | None:intergenic | 35.0% | |
| AGAGACTCCCTAAAGAATTA+AGG | - | chr4_1:79408467-79408486 | Msa0575520:intron | 35.0% | |
| GGGACATGACTTAATTCTTT+AGG | + | chr4_1:79408518-79408537 | None:intergenic | 35.0% | |
| ! | TTTGAAAACACTGCCTTGTT+AGG | - | chr4_1:79408695-79408714 | Msa0575520:intron | 35.0% |
| TTCTTTCATAGAAACTCCCT+TGG | + | chr4_1:79408816-79408835 | None:intergenic | 35.0% | |
| TTAGCAGAATGAGTGAGAAA+TGG | - | chr4_1:79408853-79408872 | Msa0575520:CDS | 35.0% | |
| AATTGCTTGATACAACGCAT+AGG | - | chr4_1:79409194-79409213 | Msa0575520:intron | 35.0% | |
| AACGCATAGGTCAAATATCA+AGG | - | chr4_1:79409207-79409226 | Msa0575520:intron | 35.0% | |
| TGCATTCCCTATAGTTTGAT+TGG | + | chr4_1:79409255-79409274 | None:intergenic | 35.0% | |
| GCAACAAAAGAAGTTCTCAA+AGG | - | chr4_1:79409530-79409549 | Msa0575520:intron | 35.0% | |
| !!! | TTGTGAATAGTTTTGGCTGT+AGG | - | chr4_1:79409652-79409671 | Msa0575520:intron | 35.0% |
| ACAAGTTTCAAACACAGACA+TGG | + | chr4_1:79409717-79409736 | None:intergenic | 35.0% | |
| GAAAAGAATTGGAAGCTATC+TGG | + | chr4_1:79409783-79409802 | None:intergenic | 35.0% | |
| ! | ATACGTGTGTTTGAAACACA+GGG | + | chr4_1:79409907-79409926 | None:intergenic | 35.0% |
| ! | TATACGTGTGTTTGAAACAC+AGG | + | chr4_1:79409908-79409927 | None:intergenic | 35.0% |
| TTTCAAACACACGTATAAGC+TGG | - | chr4_1:79409911-79409930 | Msa0575520:intron | 35.0% | |
| TATAAGCTGGTGATTCATTC+AGG | - | chr4_1:79409924-79409943 | Msa0575520:intron | 35.0% | |
| !! | ACGTATTCTGTTTCTGAGAA+AGG | + | chr4_1:79410219-79410238 | None:intergenic | 35.0% |
| AAATATGTGTTTGTGTGAGC+GGG | + | chr4_1:79410336-79410355 | None:intergenic | 35.0% | |
| CAAATATGTGTTTGTGTGAG+CGG | + | chr4_1:79410337-79410356 | None:intergenic | 35.0% | |
| GAATGTAATTTAGCATCCTC+AGG | + | chr4_1:79410590-79410609 | None:intergenic | 35.0% | |
| TACAGGTTTATCGAGTTTCT+AGG | + | chr4_1:79410742-79410761 | None:intergenic | 35.0% | |
| !!! | TCTAATTTTGAGATCCCGAT+TGG | + | chr4_1:79411066-79411085 | None:intergenic | 35.0% |
| AACACAGTACCAATTTATGC+AGG | - | chr4_1:79411131-79411150 | Msa0575520:intron | 35.0% | |
| ATGAGACACCATTATATGGT+GGG | + | chr4_1:79411205-79411224 | None:intergenic | 35.0% | |
| ATGGATGAGACACCATTATA+TGG | + | chr4_1:79411209-79411228 | None:intergenic | 35.0% | |
| GTTTCGATGATTGTTATGCT+TGG | - | chr4_1:79411293-79411312 | Msa0575520:CDS | 35.0% | |
| !! | ACACTAGCATTCCATTTTTG+AGG | - | chr4_1:79411385-79411404 | Msa0575520:intron | 35.0% |
| ! | AGAGATATCTCTAAAAGCTG+TGG | - | chr4_1:79411520-79411539 | Msa0575520:CDS | 35.0% |
| ! | GATTTTTACTCGGTTCTTCT+AGG | + | chr4_1:79411631-79411650 | None:intergenic | 35.0% |
| ACTAATCATCACTATGCACT+TGG | + | chr4_1:79411722-79411741 | None:intergenic | 35.0% | |
| GTTCGAATTCATTGCACAAA+AGG | - | chr4_1:79411781-79411800 | Msa0575520:exon | 35.0% | |
| GGTTCGAAAGAGATAGTTAT+AGG | - | chr4_1:79411832-79411851 | Msa0575520:five_prime_UTR | 35.0% | |
| CGTCATGCTATAAAAGATGA+AGG | + | chr4_1:79411869-79411888 | None:intergenic | 35.0% | |
| TTTCATAATGCTCGTGTCAT+TGG | - | chr4_1:79411931-79411950 | Msa0575520:five_prime_UTR | 35.0% | |
| AAGCAAACTAAAGTCCTAAC+TGG | + | chr4_1:79411985-79412004 | None:intergenic | 35.0% | |
| TTTATCCACACTGTATACGT+TGG | - | chr4_1:79412003-79412022 | Msa0575520:five_prime_UTR | 35.0% | |
| !! | TAAGGGTGTTTGGTTTGGTT+GGG | + | chr4_1:79406357-79406376 | None:intergenic | 40.0% |
| TAAGAAAGAAACAAGTGGGG+AGG | + | chr4_1:79406383-79406402 | None:intergenic | 40.0% | |
| TCTTATCTATGCGTTGCTTG+CGG | - | chr4_1:79406398-79406417 | Msa0575520:three_prime_UTR | 40.0% | |
| TGTAGTTGAAACTCTGGTAG+TGG | + | chr4_1:79406494-79406513 | None:intergenic | 40.0% | |
| !! | ATCGCTTTTACAACATGGCT+TGG | - | chr4_1:79406611-79406630 | Msa0575520:CDS | 40.0% |
| !! | TCGCTTTTACAACATGGCTT+GGG | - | chr4_1:79406612-79406631 | Msa0575520:CDS | 40.0% |
| ! | TTTCAAGGGATTTCTGGAGA+CGG | - | chr4_1:79406674-79406693 | Msa0575520:CDS | 40.0% |
| AAGACTTGATGCACTTGAGA+TGG | - | chr4_1:79406777-79406796 | Msa0575520:CDS | 40.0% | |
| ATCTTTCTCACCTTCTTGAG+AGG | - | chr4_1:79407045-79407064 | Msa0575520:intron | 40.0% | |
| ! | CTTGAATTAGCCTCTCAAGA+AGG | + | chr4_1:79407058-79407077 | None:intergenic | 40.0% |
| CTTCTTGAGAGGCTAATTCA+AGG | - | chr4_1:79407056-79407075 | Msa0575520:intron | 40.0% | |
| TGAGAGGCTAATTCAAGGAA+AGG | - | chr4_1:79407061-79407080 | Msa0575520:intron | 40.0% | |
| GAGAGGCTAATTCAAGGAAA+GGG | - | chr4_1:79407062-79407081 | Msa0575520:intron | 40.0% | |
| ! | CGAAGCGAAAGGCATAATAA+AGG | + | chr4_1:79407171-79407190 | None:intergenic | 40.0% |
| ACGAATGGCATTGTCAGTTT+GGG | - | chr4_1:79407285-79407304 | Msa0575520:intron | 40.0% | |
| GTTACTGTAGGTAGAAAGGA+CGG | - | chr4_1:79407620-79407639 | Msa0575520:CDS | 40.0% | |
| ! | ACTTACAAGCTAGCCTATAG+CGG | - | chr4_1:79407795-79407814 | Msa0575520:CDS | 40.0% |
| CAGGGGGAATAAAAGATGAT+AGG | - | chr4_1:79407934-79407953 | Msa0575520:intron | 40.0% | |
| AGTAAGTGACGGTTACGAAA+CGG | - | chr4_1:79408040-79408059 | Msa0575520:intron | 40.0% | |
| ! | TTCTAAGAGTCTGTTTGGCA+GGG | + | chr4_1:79408121-79408140 | None:intergenic | 40.0% |
| GCCGAAATCTCTTGAAAGTA+TGG | - | chr4_1:79408181-79408200 | Msa0575520:intron | 40.0% | |
| GACGGTGCCTTAATTCTTTA+GGG | + | chr4_1:79408477-79408496 | None:intergenic | 40.0% | |
| ! | TTCTTTAGGGAGACACTTGT+CGG | + | chr4_1:79408504-79408523 | None:intergenic | 40.0% |
| AACTTTGAACTGAAGTCGAG+TGG | + | chr4_1:79408554-79408573 | None:intergenic | 40.0% | |
| GAGAAAGAGCTGCATATTGT+TGG | + | chr4_1:79408652-79408671 | None:intergenic | 40.0% | |
| ! | ATGTACTTGTGTTTCTGTGG+TGG | + | chr4_1:79408674-79408693 | None:intergenic | 40.0% |
| GAAGATCCATACTCCTAACA+AGG | + | chr4_1:79408711-79408730 | None:intergenic | 40.0% | |
| TGATCAATCATCCAAACCAG+AGG | + | chr4_1:79408996-79409015 | None:intergenic | 40.0% | |
| TTTCAGCAGCAAACCGATTA+TGG | - | chr4_1:79409043-79409062 | Msa0575520:intron | 40.0% | |
| TTCAGCAGCAAACCGATTAT+GGG | - | chr4_1:79409044-79409063 | Msa0575520:intron | 40.0% | |
| TTCTATGTTGCGATATGTGC+AGG | - | chr4_1:79409403-79409422 | Msa0575520:intron | 40.0% | |
| !! | GTTGATTTTCTCTCTCAGCA+TGG | - | chr4_1:79409476-79409495 | Msa0575520:intron | 40.0% |
| CTTGGTCAAGAACAGGTTTA+AGG | + | chr4_1:79409743-79409762 | None:intergenic | 40.0% | |
| TCAGATACTTGGTCAAGAAC+AGG | + | chr4_1:79409750-79409769 | None:intergenic | 40.0% | |
| GACCAAGTATCTGAATTGAC+AGG | - | chr4_1:79409756-79409775 | Msa0575520:intron | 40.0% | |
| TACTGAACACTTTCATGAGC+AGG | - | chr4_1:79410531-79410550 | Msa0575520:intron | 40.0% | |
| ACTGAACACTTTCATGAGCA+GGG | - | chr4_1:79410532-79410551 | Msa0575520:intron | 40.0% | |
| ! | AACTGTGTCATTACTGGCAA+AGG | + | chr4_1:79410618-79410637 | None:intergenic | 40.0% |
| ! | CAATGGAACTGTGTCATTAC+TGG | + | chr4_1:79410624-79410643 | None:intergenic | 40.0% |
| CAGTAATGACACAGTTCCAT+TGG | - | chr4_1:79410622-79410641 | Msa0575520:intron | 40.0% | |
| AAGCACAGGCAGTATTATCA+AGG | - | chr4_1:79410675-79410694 | Msa0575520:intron | 40.0% | |
| TCAAGCACTAACTTAGACAC+TGG | - | chr4_1:79410825-79410844 | Msa0575520:intron | 40.0% | |
| CATCCTTTCCCACCATATAA+TGG | - | chr4_1:79411194-79411213 | Msa0575520:CDS | 40.0% | |
| ! | ACACCATTATATGGTGGGAA+AGG | + | chr4_1:79411200-79411219 | None:intergenic | 40.0% |
| GATGAGACACCATTATATGG+TGG | + | chr4_1:79411206-79411225 | None:intergenic | 40.0% | |
| TGTGTTCAGAGCCTCAAAAA+TGG | + | chr4_1:79411399-79411418 | None:intergenic | 40.0% | |
| ! | GATATCTCTAAAAGCTGTGG+TGG | - | chr4_1:79411523-79411542 | Msa0575520:CDS | 40.0% |
| GTGAGAAAAAGTTCAACCTC+TGG | + | chr4_1:79411680-79411699 | None:intergenic | 40.0% | |
| ! | TAGCATGACGTTTCCTCTTT+TGG | - | chr4_1:79411879-79411898 | Msa0575520:five_prime_UTR | 40.0% |
| GTGAGTGATTACACCAAAAG+AGG | + | chr4_1:79411895-79411914 | None:intergenic | 40.0% | |
| ! | GGTTCTAACTTGACATTTGG+AGG | - | chr4_1:79411952-79411971 | Msa0575520:five_prime_UTR | 40.0% |
| !! | GTAAGGGTGTTTGGTTTGGT+TGG | + | chr4_1:79406358-79406377 | None:intergenic | 45.0% |
| !! | GGAAGTAAGGGTGTTTGGTT+TGG | + | chr4_1:79406362-79406381 | None:intergenic | 45.0% |
| AACAAGTGGGGAGGAAGTAA+GGG | + | chr4_1:79406374-79406393 | None:intergenic | 45.0% | |
| AAACAAGTGGGGAGGAAGTA+AGG | + | chr4_1:79406375-79406394 | None:intergenic | 45.0% | |
| !! | GTTGAAACTCTGGTAGTGGT+GGG | + | chr4_1:79406490-79406509 | None:intergenic | 45.0% |
| !! | AGTTGAAACTCTGGTAGTGG+TGG | + | chr4_1:79406491-79406510 | None:intergenic | 45.0% |
| ! | AGGAAGATTTTCCTCTCCGT+TGG | - | chr4_1:79406703-79406722 | Msa0575520:CDS | 45.0% |
| CTATGCACAACTTAAGCTGC+CGG | - | chr4_1:79407006-79407025 | Msa0575520:intron | 45.0% | |
| ! | GATCCAAGTCTTGTGCTATC+CGG | + | chr4_1:79407028-79407047 | None:intergenic | 45.0% |
| GAAAACAGTGACGAAGCGAA+AGG | + | chr4_1:79407182-79407201 | None:intergenic | 45.0% | |
| ATGCCATTCGTGTGAAACCT+GGG | + | chr4_1:79407276-79407295 | None:intergenic | 45.0% | |
| AATGCCATTCGTGTGAAACC+TGG | + | chr4_1:79407277-79407296 | None:intergenic | 45.0% | |
| CACGAATGGCATTGTCAGTT+TGG | - | chr4_1:79407284-79407303 | Msa0575520:intron | 45.0% | |
| CTCTTACCAAAGCTCAGTGT+TGG | - | chr4_1:79407500-79407519 | Msa0575520:intron | 45.0% | |
| !! | ACCAAAGCTCAGTGTTGGTT+AGG | - | chr4_1:79407505-79407524 | Msa0575520:intron | 45.0% |
| TCCTAACCAACACTGAGCTT+TGG | + | chr4_1:79407509-79407528 | None:intergenic | 45.0% | |
| GTGATTCCAAGCACACATGA+CGG | - | chr4_1:79407688-79407707 | Msa0575520:CDS | 45.0% | |
| ATAGAATCTGTTAGGGGGCA+AGG | - | chr4_1:79407729-79407748 | Msa0575520:CDS | 45.0% | |
| ! | AAGGATAACTAGGTTCGGTC+TGG | - | chr4_1:79407748-79407767 | Msa0575520:CDS | 45.0% |
| ! | TCAGCTAGCTTATCCGCTAT+AGG | + | chr4_1:79407811-79407830 | None:intergenic | 45.0% |
| GTAAGTGACGGTTACGAAAC+GGG | - | chr4_1:79408041-79408060 | Msa0575520:intron | 45.0% | |
| ! | CTTCTAAGAGTCTGTTTGGC+AGG | + | chr4_1:79408122-79408141 | None:intergenic | 45.0% |
| CTGCCAAACAGACTCTTAGA+AGG | - | chr4_1:79408120-79408139 | Msa0575520:intron | 45.0% | |
| ! | CCTCCTTCTAAGAGTCTGTT+TGG | + | chr4_1:79408126-79408145 | None:intergenic | 45.0% |
| CCAAACAGACTCTTAGAAGG+AGG | - | chr4_1:79408123-79408142 | Msa0575520:intron | 45.0% | |
| AGACTCTTAGAAGGAGGAGA+GGG | - | chr4_1:79408129-79408148 | Msa0575520:intron | 45.0% | |
| CAAATACACGCTAGCAGTAG+AGG | + | chr4_1:79408397-79408416 | None:intergenic | 45.0% | |
| GGACGGTGCCTTAATTCTTT+AGG | + | chr4_1:79408478-79408497 | None:intergenic | 45.0% | |
| ! | TGAAGTCGAGTGGTGCTTTT+CGG | + | chr4_1:79408544-79408563 | None:intergenic | 45.0% |
| ! | ACACTGCCTTGTTAGGAGTA+TGG | - | chr4_1:79408702-79408721 | Msa0575520:intron | 45.0% |
| AGTGCAGCTATCCAAGTAGA+AGG | - | chr4_1:79408765-79408784 | Msa0575520:CDS | 45.0% | |
| CAAGTAGAAGGCTCGAGTTT+GGG | - | chr4_1:79408777-79408796 | Msa0575520:CDS | 45.0% | |
| AAGTAGAAGGCTCGAGTTTG+GGG | - | chr4_1:79408778-79408797 | Msa0575520:CDS | 45.0% | |
| !! | TGGGGCATTTTGGATTTCCA+AGG | - | chr4_1:79408796-79408815 | Msa0575520:CDS | 45.0% |
| !! | GGGGCATTTTGGATTTCCAA+GGG | - | chr4_1:79408797-79408816 | Msa0575520:CDS | 45.0% |
| ! | AACATTTTCCCCCTAGTGCT+TGG | - | chr4_1:79409092-79409111 | Msa0575520:intron | 45.0% |
| ! | ACATTTTCCCCCTAGTGCTT+GGG | - | chr4_1:79409093-79409112 | Msa0575520:intron | 45.0% |
| ATTTGTGCTCCCAAGCACTA+GGG | + | chr4_1:79409105-79409124 | None:intergenic | 45.0% | |
| AATTTGTGCTCCCAAGCACT+AGG | + | chr4_1:79409106-79409125 | None:intergenic | 45.0% | |
| TTGCGATATGTGCAGGATAG+TGG | - | chr4_1:79409410-79409429 | Msa0575520:intron | 45.0% | |
| ! | ATAGTGGAGACGTGGTTGAT+GGG | - | chr4_1:79409426-79409445 | Msa0575520:intron | 45.0% |
| GACGACCAGCAGAAATTTCT+GGG | - | chr4_1:79409449-79409468 | Msa0575520:intron | 45.0% | |
| CACTTCCCAGAAATTTCTGC+TGG | + | chr4_1:79409457-79409476 | None:intergenic | 45.0% | |
| TCCATGTCAGAAATCAAGGC+AGG | + | chr4_1:79409506-79409525 | None:intergenic | 45.0% | |
| TGCCTTGATTTCTGACATGG+AGG | - | chr4_1:79409505-79409524 | Msa0575520:intron | 45.0% | |
| CTCCTCCATGTCAGAAATCA+AGG | + | chr4_1:79409510-79409529 | None:intergenic | 45.0% | |
| CTTGATTTCTGACATGGAGG+AGG | - | chr4_1:79409508-79409527 | Msa0575520:intron | 45.0% | |
| GGCCTGTCAATTCAGATACT+TGG | + | chr4_1:79409761-79409780 | None:intergenic | 45.0% | |
| CGTCGTATTGTTGAAGAGAC+TGG | + | chr4_1:79410489-79410508 | None:intergenic | 45.0% | |
| CTGAACACTTTCATGAGCAG+GGG | - | chr4_1:79410533-79410552 | Msa0575520:intron | 45.0% | |
| TGAACACTTTCATGAGCAGG+GGG | - | chr4_1:79410534-79410553 | Msa0575520:intron | 45.0% | |
| GTCATTACTGGCAAAGGTTG+TGG | + | chr4_1:79410612-79410631 | None:intergenic | 45.0% | |
| ! | TCAACTCATGATGGAAGCAC+AGG | - | chr4_1:79410661-79410680 | Msa0575520:intron | 45.0% |
| !! | TGAGGCTCTGAACACATCAT+AGG | - | chr4_1:79411403-79411422 | Msa0575520:intron | 45.0% |
| ! | GCTCTGAACACATCATAGGA+TGG | - | chr4_1:79411407-79411426 | Msa0575520:intron | 45.0% |
| AGGACACATCTGTGCAACTT+GGG | + | chr4_1:79411603-79411622 | None:intergenic | 45.0% | |
| AAGGACACATCTGTGCAACT+TGG | + | chr4_1:79411604-79411623 | None:intergenic | 45.0% | |
| CACTTGGCATATTTGCGTAG+AGG | + | chr4_1:79411706-79411725 | None:intergenic | 45.0% | |
| AACTAAAGTCCTAACTGGCC+TGG | + | chr4_1:79411980-79411999 | None:intergenic | 45.0% | |
| CACACTGTATACGTTGGCAA+GGG | - | chr4_1:79412009-79412028 | Msa0575520:five_prime_UTR | 45.0% | |
| ! | ATTTCTGGAGACGGCATAGG+AGG | - | chr4_1:79406683-79406702 | Msa0575520:CDS | 50.0% |
| !! | TTCCTCTCCGTTGGTGTTGT+AGG | - | chr4_1:79406712-79406731 | Msa0575520:CDS | 50.0% |
| TGCCATTCGTGTGAAACCTG+GGG | + | chr4_1:79407275-79407294 | None:intergenic | 50.0% | |
| AGAGCTTTCAAGGCTTCGTG+CGG | + | chr4_1:79407380-79407399 | None:intergenic | 50.0% | |
| ATCACACCGTCATGTGTGCT+TGG | + | chr4_1:79407697-79407716 | None:intergenic | 50.0% | |
| AAGCACACATGACGGTGTGA+TGG | - | chr4_1:79407696-79407715 | Msa0575520:CDS | 50.0% | |
| ! | ACACATGACGGTGTGATGGA+AGG | - | chr4_1:79407700-79407719 | Msa0575520:CDS | 50.0% |
| GTTAGGGGGCAAGGATAACT+AGG | - | chr4_1:79407738-79407757 | Msa0575520:CDS | 50.0% | |
| GGGGCAAGGATAACTAGGTT+CGG | - | chr4_1:79407743-79407762 | Msa0575520:CDS | 50.0% | |
| CAGACTCTTAGAAGGAGGAG+AGG | - | chr4_1:79408128-79408147 | Msa0575520:intron | 50.0% | |
| GCAAGGAAGAAGCGAGTAGT+GGG | - | chr4_1:79408159-79408178 | Msa0575520:intron | 50.0% | |
| GAGACACTTGTCGGAAAGGA+CGG | + | chr4_1:79408495-79408514 | None:intergenic | 50.0% | |
| TAGGGAGACACTTGTCGGAA+AGG | + | chr4_1:79408499-79408518 | None:intergenic | 50.0% | |
| ! | CGAGTGGTGCTTTTCGGAAA+GGG | + | chr4_1:79408538-79408557 | None:intergenic | 50.0% |
| ! | TCGAGTGGTGCTTTTCGGAA+AGG | + | chr4_1:79408539-79408558 | None:intergenic | 50.0% |
| TATGCTGTGTCTGCTGTCTC+TGG | + | chr4_1:79408577-79408596 | None:intergenic | 50.0% | |
| CCAAACTCGAGCCTTCTACT+TGG | + | chr4_1:79408779-79408798 | None:intergenic | 50.0% | |
| CCAAGTAGAAGGCTCGAGTT+TGG | - | chr4_1:79408776-79408795 | Msa0575520:CDS | 50.0% | |
| TTTGTGCTCCCAAGCACTAG+GGG | + | chr4_1:79409104-79409123 | None:intergenic | 50.0% | |
| !! | GATAGTGGAGACGTGGTTGA+TGG | - | chr4_1:79409425-79409444 | Msa0575520:intron | 50.0% |
| ! | TAGTGGAGACGTGGTTGATG+GGG | - | chr4_1:79409427-79409446 | Msa0575520:intron | 50.0% |
| GGACGACCAGCAGAAATTTC+TGG | - | chr4_1:79409448-79409467 | Msa0575520:intron | 50.0% | |
| GCCTGCCTTGATTTCTGACA+TGG | - | chr4_1:79409502-79409521 | Msa0575520:intron | 50.0% | |
| TGTGTTTGTGTGAGCGGGAA+GGG | + | chr4_1:79410331-79410350 | None:intergenic | 50.0% | |
| ATGTGTTTGTGTGAGCGGGA+AGG | + | chr4_1:79410332-79410351 | None:intergenic | 50.0% | |
| GGACACATCTGTGCAACTTG+GGG | + | chr4_1:79411602-79411621 | None:intergenic | 50.0% | |
| ! | CTCGGTTCTTCTAGGAGCAA+AGG | + | chr4_1:79411623-79411642 | None:intergenic | 50.0% |
| ACTTGACATTTGGAGGAGCC+AGG | - | chr4_1:79411959-79411978 | Msa0575520:five_prime_UTR | 50.0% | |
| CCTTGCCAACGTATACAGTG+TGG | + | chr4_1:79412011-79412030 | None:intergenic | 50.0% | |
| CCACACTGTATACGTTGGCA+AGG | - | chr4_1:79412008-79412027 | Msa0575520:five_prime_UTR | 50.0% | |
| !! | GGGGAGGAAGTAAGGGTGTT+TGG | + | chr4_1:79406367-79406386 | None:intergenic | 55.0% |
| ! | GGGATTTCTGGAGACGGCAT+AGG | - | chr4_1:79406680-79406699 | Msa0575520:CDS | 55.0% |
| CTCCTACAACACCAACGGAG+AGG | + | chr4_1:79406717-79406736 | None:intergenic | 55.0% | |
| !! | CTCTCCGTTGGTGTTGTAGG+AGG | - | chr4_1:79406715-79406734 | Msa0575520:CDS | 55.0% |
| !! | TCCGTTGGTGTTGTAGGAGG+TGG | - | chr4_1:79406718-79406737 | Msa0575520:CDS | 55.0% |
| GCCACCTCCTACAACACCAA+CGG | + | chr4_1:79406722-79406741 | None:intergenic | 55.0% | |
| CTGCCGGATAGCACAAGACT+TGG | - | chr4_1:79407022-79407041 | Msa0575520:intron | 55.0% | |
| TTCTGTGCAATTTCCCCCCC+AGG | - | chr4_1:79407256-79407275 | Msa0575520:intron | 55.0% | |
| CATTCGTGTGAAACCTGGGG+GGG | + | chr4_1:79407272-79407291 | None:intergenic | 55.0% | |
| CCATTCGTGTGAAACCTGGG+GGG | + | chr4_1:79407273-79407292 | None:intergenic | 55.0% | |
| GCCATTCGTGTGAAACCTGG+GGG | + | chr4_1:79407274-79407293 | None:intergenic | 55.0% | |
| CTCTTAGAAGGAGGAGAGGG+AGG | - | chr4_1:79408132-79408151 | Msa0575520:intron | 55.0% | |
| TAGAAGGAGGAGAGGGAGGA+AGG | - | chr4_1:79408136-79408155 | Msa0575520:intron | 55.0% | |
| AGAAGGAGGAGAGGGAGGAA+GGG | - | chr4_1:79408137-79408156 | Msa0575520:intron | 55.0% | |
| GGCAAGGAAGAAGCGAGTAG+TGG | - | chr4_1:79408158-79408177 | Msa0575520:intron | 55.0% | |
| !! | GGCTCGAGTTTGGGGCATTT+TGG | - | chr4_1:79408786-79408805 | Msa0575520:CDS | 55.0% |
| TTGTGCTCCCAAGCACTAGG+GGG | + | chr4_1:79409103-79409122 | None:intergenic | 55.0% | |
| !! | TGTGCAGGATAGTGGAGACG+TGG | - | chr4_1:79409418-79409437 | Msa0575520:intron | 55.0% |
| GTGTTTGTGTGAGCGGGAAG+GGG | + | chr4_1:79410330-79410349 | None:intergenic | 55.0% | |
| GATACTCTGCCCGAGCTCAT+GGG | - | chr4_1:79411545-79411564 | Msa0575520:CDS | 55.0% | |
| ATACTCTGCCCGAGCTCATG+GGG | - | chr4_1:79411546-79411565 | Msa0575520:CDS | 55.0% | |
| CCCCCCAGGTTTCACACGAA+TGG | - | chr4_1:79407270-79407289 | Msa0575520:intron | 60.0% | |
| CAGGGGGAGCCCACATTTCT+GGG | - | chr4_1:79410550-79410569 | Msa0575520:intron | 60.0% | |
| GGATACTCTGCCCGAGCTCA+TGG | - | chr4_1:79411544-79411563 | Msa0575520:CDS | 60.0% | |
| CTTGCAGTCCCCATGAGCTC+GGG | + | chr4_1:79411557-79411576 | None:intergenic | 60.0% | |
| GCTTGCAGTCCCCATGAGCT+CGG | + | chr4_1:79411558-79411577 | None:intergenic | 60.0% | |
| TTGGAGGAGCCAGGCCAGTT+AGG | - | chr4_1:79411968-79411987 | Msa0575520:five_prime_UTR | 60.0% | |
| GAGGAGAGGGAGGAAGGGCA+AGG | - | chr4_1:79408142-79408161 | Msa0575520:intron | 65.0% | |
| GCAGGGGGAGCCCACATTTC+TGG | - | chr4_1:79410549-79410568 | Msa0575520:intron | 65.0% | |
| GGGGACTGCAAGCGTGCCAC+TGG | - | chr4_1:79411565-79411584 | Msa0575520:CDS | 70.0% | |
| TGGGGCAGTGCTCTCGCCAG+TGG | + | chr4_1:79411584-79411603 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79406192 | 79412112 | 79406192 | ID=Msa0575520;Name=Msa0575520 |
| chr4_1 | mRNA | 79406192 | 79412112 | 79406192 | ID=Msa0575520-mRNA-1;Parent=Msa0575520;Name=Msa0575520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=325|1|1|1|1|1|7|382|363 |
| chr4_1 | exon | 79406192 | 79406805 | 79406192 | ID=Msa0575520-mRNA-1:exon:28351;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79407608 | 79407829 | 79407608 | ID=Msa0575520-mRNA-1:exon:28350;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79408752 | 79408879 | 79408752 | ID=Msa0575520-mRNA-1:exon:28349;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79410893 | 79411026 | 79410893 | ID=Msa0575520-mRNA-1:exon:28348;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79411158 | 79411357 | 79411158 | ID=Msa0575520-mRNA-1:exon:28347;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79411462 | 79411623 | 79411462 | ID=Msa0575520-mRNA-1:exon:28346;Parent=Msa0575520-mRNA-1 |
| chr4_1 | exon | 79411774 | 79412112 | 79411774 | ID=Msa0575520-mRNA-1:exon:28345;Parent=Msa0575520-mRNA-1 |
| chr4_1 | five_prime_UTR | 79411788 | 79412112 | 79411788 | ID=Msa0575520-mRNA-1:five_prime_utr;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79411774 | 79411787 | 79411774 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79411462 | 79411623 | 79411462 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79411158 | 79411357 | 79411158 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79410893 | 79411026 | 79410893 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79408752 | 79408879 | 79408752 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79407608 | 79407829 | 79407608 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | CDS | 79406574 | 79406805 | 79406574 | ID=Msa0575520-mRNA-1:cds;Parent=Msa0575520-mRNA-1 |
| chr4_1 | three_prime_UTR | 79406192 | 79406573 | 79406192 | ID=Msa0575520-mRNA-1:three_prime_utr;Parent=Msa0575520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
