Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575270 | XP_003631025.2 | 94.215 | 363 | 8 | 6 | 1 | 359 | 1 | 354 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575270 | sp|O49500|MBR2_ARATH | 47.321 | 112 | 58 | 1 | 241 | 352 | 550 | 660 | 6.78e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575270 | G7LCD4 | 94.215 | 363 | 8 | 6 | 1 | 359 | 1 | 354 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0574640 | Msa0575270 | 0.814742 | 1.319761e-51 | -8.615850e-47 |
| Msa0575270 | Msa0575330 | 0.866743 | 2.281325e-65 | -8.615850e-47 |
| Msa0575270 | Msa0575520 | 0.835160 | 1.972242e-56 | -8.615850e-47 |
| Msa0575270 | Msa0575690 | 0.839075 | 1.967942e-57 | -8.615850e-47 |
| Msa0575270 | Msa0930830 | -0.817969 | 2.502718e-52 | -8.615850e-47 |
| Msa0575270 | Msa1407640 | -0.818747 | 1.668255e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575270 | MtrunA17_Chr8g0392341 | 94.215 | 363 | 8 | 6 | 1 | 359 | 1 | 354 | 0.0 | 691 |
| Msa0575270 | MtrunA17_Chr6g0483631 | 54.155 | 373 | 125 | 10 | 15 | 358 | 4 | 359 | 5.61e-123 | 358 |
| Msa0575270 | MtrunA17_Chr1g0153211 | 45.082 | 122 | 65 | 2 | 231 | 352 | 583 | 702 | 3.09e-31 | 124 |
| Msa0575270 | MtrunA17_Chr3g0138951 | 44.961 | 129 | 64 | 3 | 233 | 355 | 405 | 532 | 1.30e-29 | 119 |
| Msa0575270 | MtrunA17_Chr2g0316601 | 44.444 | 117 | 58 | 1 | 248 | 357 | 401 | 517 | 1.68e-27 | 113 |
| Msa0575270 | MtrunA17_Chr1g0147951 | 39.189 | 148 | 67 | 3 | 229 | 353 | 323 | 470 | 9.51e-27 | 110 |
| Msa0575270 | MtrunA17_Chr7g0263911 | 43.939 | 132 | 68 | 4 | 222 | 352 | 506 | 632 | 2.34e-26 | 110 |
| Msa0575270 | MtrunA17_Chr2g0316591 | 48.598 | 107 | 51 | 3 | 248 | 354 | 194 | 296 | 2.90e-25 | 104 |
| Msa0575270 | MtrunA17_Chr1g0181401 | 46.789 | 109 | 53 | 3 | 245 | 352 | 421 | 525 | 1.16e-24 | 105 |
| Msa0575270 | MtrunA17_Chr4g0044601 | 44.444 | 117 | 64 | 1 | 241 | 357 | 583 | 698 | 2.15e-24 | 104 |
| Msa0575270 | MtrunA17_Chr2g0315711 | 38.793 | 116 | 60 | 3 | 248 | 354 | 214 | 327 | 3.68e-20 | 90.1 |
| Msa0575270 | MtrunA17_Chr3g0086891 | 40.206 | 97 | 57 | 1 | 258 | 354 | 348 | 443 | 2.98e-19 | 88.6 |
| Msa0575270 | MtrunA17_Chr8g0352131 | 34.694 | 98 | 63 | 1 | 258 | 355 | 144 | 240 | 2.05e-16 | 77.8 |
| Msa0575270 | MtrunA17_Chr5g0401961 | 32.331 | 133 | 86 | 4 | 222 | 353 | 464 | 593 | 4.00e-16 | 79.7 |
| Msa0575270 | MtrunA17_Chr3g0124751 | 39.000 | 100 | 50 | 3 | 261 | 356 | 139 | 231 | 2.28e-15 | 74.7 |
| Msa0575270 | MtrunA17_Chr4g0032561 | 35.714 | 112 | 69 | 2 | 248 | 357 | 132 | 242 | 2.80e-15 | 74.7 |
| Msa0575270 | MtrunA17_Chr1g0211831 | 35.455 | 110 | 66 | 2 | 248 | 357 | 230 | 334 | 4.67e-15 | 75.5 |
| Msa0575270 | MtrunA17_Chr2g0315681 | 38.333 | 120 | 51 | 5 | 221 | 331 | 71 | 176 | 4.74e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575270 | AT1G73760.1 | 44.780 | 364 | 157 | 10 | 13 | 352 | 17 | 360 | 1.03e-85 | 264 |
| Msa0575270 | AT1G17970.1 | 37.337 | 383 | 190 | 12 | 8 | 358 | 3 | 367 | 1.14e-57 | 191 |
| Msa0575270 | AT1G73760.2 | 42.086 | 278 | 120 | 9 | 13 | 266 | 17 | 277 | 4.24e-48 | 164 |
| Msa0575270 | AT5G10650.1 | 41.270 | 126 | 70 | 1 | 231 | 352 | 391 | 516 | 2.96e-32 | 127 |
| Msa0575270 | AT5G10650.2 | 41.270 | 126 | 70 | 1 | 231 | 352 | 391 | 516 | 2.96e-32 | 127 |
| Msa0575270 | AT4G31450.1 | 41.221 | 131 | 68 | 2 | 230 | 352 | 360 | 489 | 6.96e-31 | 122 |
| Msa0575270 | AT4G31450.2 | 41.221 | 131 | 68 | 2 | 230 | 352 | 360 | 489 | 6.96e-31 | 122 |
| Msa0575270 | AT4G34040.1 | 47.321 | 112 | 58 | 1 | 241 | 352 | 550 | 660 | 6.89e-29 | 118 |
| Msa0575270 | AT5G24870.3 | 34.239 | 184 | 108 | 3 | 182 | 352 | 326 | 509 | 2.28e-28 | 115 |
| Msa0575270 | AT5G24870.1 | 34.239 | 184 | 108 | 3 | 182 | 352 | 326 | 509 | 2.28e-28 | 115 |
| Msa0575270 | AT5G24870.2 | 34.239 | 184 | 108 | 3 | 182 | 352 | 326 | 509 | 2.28e-28 | 115 |
| Msa0575270 | AT2G15530.5 | 47.009 | 117 | 60 | 1 | 241 | 355 | 584 | 700 | 3.39e-28 | 116 |
| Msa0575270 | AT2G15530.3 | 47.009 | 117 | 60 | 1 | 241 | 355 | 584 | 700 | 3.39e-28 | 116 |
| Msa0575270 | AT2G15530.2 | 47.009 | 117 | 60 | 1 | 241 | 355 | 584 | 700 | 3.39e-28 | 116 |
| Msa0575270 | AT2G15530.1 | 47.009 | 117 | 60 | 1 | 241 | 355 | 584 | 700 | 3.39e-28 | 116 |
| Msa0575270 | AT2G15530.7 | 47.009 | 117 | 60 | 1 | 241 | 355 | 584 | 700 | 3.39e-28 | 116 |
| Msa0575270 | AT2G15530.6 | 47.009 | 117 | 60 | 1 | 241 | 355 | 562 | 678 | 3.82e-28 | 116 |
| Msa0575270 | AT1G45180.2 | 43.511 | 131 | 71 | 2 | 222 | 352 | 458 | 585 | 2.04e-27 | 113 |
| Msa0575270 | AT1G45180.1 | 43.511 | 131 | 71 | 2 | 222 | 352 | 506 | 633 | 3.48e-27 | 113 |
| Msa0575270 | AT1G45180.3 | 43.511 | 131 | 71 | 2 | 222 | 352 | 506 | 633 | 3.48e-27 | 113 |
| Msa0575270 | AT1G45180.4 | 43.511 | 131 | 71 | 2 | 222 | 352 | 506 | 633 | 3.48e-27 | 113 |
| Msa0575270 | AT5G42940.2 | 40.458 | 131 | 73 | 3 | 224 | 352 | 551 | 678 | 3.49e-27 | 113 |
| Msa0575270 | AT5G42940.1 | 40.458 | 131 | 73 | 3 | 224 | 352 | 551 | 678 | 3.49e-27 | 113 |
| Msa0575270 | AT2G15530.4 | 46.491 | 114 | 59 | 1 | 241 | 352 | 584 | 697 | 5.85e-26 | 109 |
| Msa0575270 | AT1G53190.2 | 36.957 | 138 | 77 | 4 | 226 | 355 | 351 | 486 | 1.45e-25 | 107 |
| Msa0575270 | AT1G53190.1 | 36.957 | 138 | 77 | 4 | 226 | 355 | 351 | 486 | 1.45e-25 | 107 |
| Msa0575270 | AT3G15070.1 | 36.036 | 111 | 68 | 1 | 248 | 355 | 362 | 472 | 6.46e-22 | 97.1 |
| Msa0575270 | AT3G15070.2 | 36.036 | 111 | 68 | 1 | 248 | 355 | 362 | 472 | 6.46e-22 | 97.1 |
| Msa0575270 | AT2G37150.10 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.11 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.9 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.12 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.5 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.4 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.2 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.8 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.7 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.6 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.1 | 46.789 | 109 | 54 | 3 | 245 | 352 | 429 | 534 | 4.19e-20 | 92.0 |
| Msa0575270 | AT2G37150.14 | 46.789 | 109 | 54 | 3 | 245 | 352 | 445 | 550 | 4.97e-20 | 91.7 |
| Msa0575270 | AT2G37150.13 | 46.789 | 109 | 54 | 3 | 245 | 352 | 445 | 550 | 4.97e-20 | 91.7 |
| Msa0575270 | AT2G37150.15 | 46.789 | 109 | 54 | 3 | 245 | 352 | 445 | 550 | 4.97e-20 | 91.7 |
| Msa0575270 | AT2G37150.3 | 46.789 | 109 | 54 | 3 | 245 | 352 | 482 | 587 | 6.30e-20 | 91.7 |
| Msa0575270 | AT1G36950.1 | 38.095 | 105 | 57 | 2 | 251 | 353 | 24 | 122 | 5.81e-17 | 79.3 |
| Msa0575270 | AT4G00070.1 | 39.175 | 97 | 51 | 2 | 251 | 345 | 88 | 178 | 1.41e-16 | 77.4 |
| Msa0575270 | AT3G63530.2 | 35.714 | 98 | 62 | 1 | 258 | 355 | 145 | 241 | 4.87e-16 | 77.4 |
| Msa0575270 | AT3G63530.1 | 35.714 | 98 | 62 | 1 | 258 | 355 | 145 | 241 | 4.87e-16 | 77.4 |
| Msa0575270 | AT3G47180.1 | 40.217 | 92 | 51 | 3 | 261 | 351 | 115 | 203 | 1.13e-14 | 72.8 |
| Msa0575270 | AT3G19910.1 | 27.673 | 159 | 107 | 3 | 203 | 356 | 178 | 333 | 2.09e-14 | 73.9 |
| Msa0575270 | AT5G52140.1 | 37.500 | 104 | 58 | 2 | 259 | 355 | 175 | 278 | 4.85e-14 | 72.0 |
| Msa0575270 | AT5G67120.1 | 36.082 | 97 | 56 | 2 | 261 | 356 | 181 | 272 | 7.12e-14 | 71.6 |
| Msa0575270 | AT5G10650.3 | 35.955 | 89 | 53 | 1 | 231 | 315 | 391 | 479 | 2.94e-13 | 71.2 |
Find 76 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTGTTGATTTGGTTTC+TGG | 0.069335 | 4_1:-79102934 | None:intergenic |
| GGACATTCTCATCCTAAAAT+AGG | 0.220524 | 4_1:+79106394 | Msa0575270:three_prime_UTR |
| TCTGCAGCAGCTACCTTTAG+AGG | 0.246991 | 4_1:+79103110 | Msa0575270:CDS |
| ATCTGTTTCTGTTTCTGAAA+TGG | 0.265844 | 4_1:-79102967 | None:intergenic |
| GCAGCTACCTTTAGAGGTTT+AGG | 0.268551 | 4_1:+79103116 | Msa0575270:CDS |
| ATCTTTAGATCATCCTTCTA+AGG | 0.290670 | 4_1:+79106556 | Msa0575270:three_prime_UTR |
| AGAATTGTATTTGCCTTAGA+AGG | 0.298970 | 4_1:-79106569 | None:intergenic |
| TCCGGAAAAGAGAAGGTATC+TGG | 0.302760 | 4_1:-79104561 | None:intergenic |
| CACGTGATCTTTACAGAGAT+TGG | 0.310639 | 4_1:+79105351 | Msa0575270:CDS |
| TGAGGTGGTTGTTGTTTCAT+TGG | 0.328998 | 4_1:-79103054 | None:intergenic |
| TCTGTTTCTGTTTCTGAAAT+GGG | 0.331183 | 4_1:-79102966 | None:intergenic |
| CAACAAGGAGGCTAAAAGTT+TGG | 0.362182 | 4_1:-79106475 | None:intergenic |
| CAGAGATGAAATTGTGGACT+TGG | 0.368102 | 4_1:-79103024 | None:intergenic |
| GTTTGGTGTGGTCCTGGAAT+TGG | 0.370161 | 4_1:+79103296 | Msa0575270:CDS |
| GAATCAACAAGAATGGGATT+TGG | 0.372560 | 4_1:-79102826 | None:intergenic |
| CACTGCCGGTGCTTCTCAAC+AGG | 0.376331 | 4_1:+79103142 | Msa0575270:CDS |
| CTGTTTCTGAAATGGGTTTG+TGG | 0.379427 | 4_1:-79102959 | None:intergenic |
| AGCTTAGTCTTCCTTATGTA+AGG | 0.382634 | 4_1:-79105605 | None:intergenic |
| CTTGAGCTCGGTGAGAGAAT+TGG | 0.385669 | 4_1:+79105545 | Msa0575270:CDS |
| CACAGAAGACATGTTTGGTT+TGG | 0.388980 | 4_1:-79102862 | None:intergenic |
| CAGAGCAACAACATATGAAA+TGG | 0.397557 | 4_1:+79102901 | Msa0575270:CDS |
| CAAGATGTTTGGTGTGGTCC+TGG | 0.397639 | 4_1:+79103290 | Msa0575270:CDS |
| CATGTTTGGTTTGGTTTGGT+TGG | 0.415476 | 4_1:-79102853 | None:intergenic |
| GGTAGACAGCAGTGCGCCTT+CGG | 0.433538 | 4_1:-79104539 | None:intergenic |
| AGAATTGGTTATGTGAATAC+TGG | 0.435476 | 4_1:+79105560 | Msa0575270:CDS |
| TCTGCTGAAAATCCAATTCC+AGG | 0.438438 | 4_1:-79103308 | None:intergenic |
| GCTTCAAGGAAGAATACTAA+TGG | 0.441507 | 4_1:+79105313 | Msa0575270:CDS |
| TGGAGAAGAATCAACAAGAA+TGG | 0.451686 | 4_1:-79102833 | None:intergenic |
| TGTGTCACAGAAGACATGTT+TGG | 0.455016 | 4_1:-79102867 | None:intergenic |
| AAGACATGTTTGGTTTGGTT+TGG | 0.464614 | 4_1:-79102857 | None:intergenic |
| TTCTCAACAGGTGTCGGTGC+CGG | 0.464786 | 4_1:+79103154 | Msa0575270:CDS |
| CTTTCAATGTATACAACAAT+GGG | 0.470945 | 4_1:+79106292 | Msa0575270:CDS |
| GGAGAAGAATCAACAAGAAT+GGG | 0.470963 | 4_1:-79102832 | None:intergenic |
| CTGGCTTTCTTCCCTTGATG+AGG | 0.471545 | 4_1:-79103203 | None:intergenic |
| CTGCCCTGTGTGTAAGCAGC+AGG | 0.483447 | 4_1:+79106331 | Msa0575270:CDS |
| TTTGAAGCAGATGATGAGCT+TGG | 0.488593 | 4_1:+79106242 | Msa0575270:CDS |
| TTGAAGCAGATGATGAGCTT+GGG | 0.488674 | 4_1:+79106243 | Msa0575270:CDS |
| AGCCTTCATCTTCCTTCCGA+AGG | 0.489286 | 4_1:+79104523 | Msa0575270:intron |
| TTGAAGATAATGGCGCTTCA+AGG | 0.491059 | 4_1:+79105299 | Msa0575270:intron |
| GAGCATGCTGTGAAAATGTC+AGG | 0.495406 | 4_1:-79104591 | None:intergenic |
| CGGTGCTTCTCAACAGGTGT+CGG | 0.499626 | 4_1:+79103148 | Msa0575270:CDS |
| TGGACTTGGAGCGTGTGGAT+TGG | 0.504134 | 4_1:-79103010 | None:intergenic |
| AAAATGTCAGGATCGGTGTC+CGG | 0.504228 | 4_1:-79104579 | None:intergenic |
| GAGTCTGTAATATATGTTAT+CGG | 0.508239 | 4_1:+79106500 | Msa0575270:three_prime_UTR |
| AGTGCATCCTAAACCTCTAA+AGG | 0.511813 | 4_1:-79103123 | None:intergenic |
| TTGTTGATTTGGTTTCTGGA+TGG | 0.520614 | 4_1:-79102930 | None:intergenic |
| CTTCAAGGAAGAATACTAAT+GGG | 0.521708 | 4_1:+79105314 | Msa0575270:CDS |
| ATGAGATGGAACCTTACATA+AGG | 0.523941 | 4_1:+79105594 | Msa0575270:CDS |
| GTTGATGGGTTGTTGTGAGG+TGG | 0.538847 | 4_1:-79103069 | None:intergenic |
| TGATTCGTGCATCAGCAGAT+TGG | 0.543188 | 4_1:+79103180 | Msa0575270:CDS |
| GACAGCAGTGCGCCTTCGGA+AGG | 0.548094 | 4_1:-79104535 | None:intergenic |
| CGACACCTGTTGAGAAGCAC+CGG | 0.548448 | 4_1:-79103147 | None:intergenic |
| TGGACTTAAAGAAGATGAGA+TGG | 0.549079 | 4_1:+79105580 | Msa0575270:CDS |
| ACTTTCAATGTATACAACAA+TGG | 0.550883 | 4_1:+79106291 | Msa0575270:CDS |
| TCAGCAGATTGGCCTCATCA+AGG | 0.559576 | 4_1:+79103191 | Msa0575270:CDS |
| AAGCAGATGATGAGCTTGGG+AGG | 0.572047 | 4_1:+79106246 | Msa0575270:CDS |
| CAGCAGATTGGCCTCATCAA+GGG | 0.572824 | 4_1:+79103192 | Msa0575270:CDS |
| GCAACCTGCTGCTTACACAC+AGG | 0.572960 | 4_1:-79106335 | None:intergenic |
| AGAGGTTTAGGATGCACTGC+CGG | 0.573535 | 4_1:+79103128 | Msa0575270:CDS |
| CGCCTTCGGAAGGAAGATGA+AGG | 0.573947 | 4_1:-79104525 | None:intergenic |
| CAACCTGCTGCTTACACACA+GGG | 0.578724 | 4_1:-79106334 | None:intergenic |
| TGACAGCAATTGCTTGAGCT+CGG | 0.580670 | 4_1:+79105533 | Msa0575270:intron |
| ATCGGTGTCCGGAAAAGAGA+AGG | 0.584448 | 4_1:-79104568 | None:intergenic |
| TTTGTTGATGGGTTGTTGTG+AGG | 0.585186 | 4_1:-79103072 | None:intergenic |
| GAGAAGCAGAGATGAAATTG+TGG | 0.590057 | 4_1:-79103030 | None:intergenic |
| TGTTGATAACATGTCATATG+AGG | 0.603689 | 4_1:+79105382 | Msa0575270:CDS |
| CCGGAAAAGAGAAGGTATCT+GGG | 0.604634 | 4_1:-79104560 | None:intergenic |
| TGCTGTGAAAATGTCAGGAT+CGG | 0.629807 | 4_1:-79104586 | None:intergenic |
| GCTGATGCACGAATCACTGC+CGG | 0.635175 | 4_1:-79103173 | None:intergenic |
| AATTGTGGACTTGGAGCGTG+TGG | 0.637667 | 4_1:-79103015 | None:intergenic |
| CAAGGAAGAATACTAATGGG+AGG | 0.689238 | 4_1:+79105317 | Msa0575270:CDS |
| GAAATATCTCTGATATGACG+AGG | 0.695301 | 4_1:-79104633 | None:intergenic |
| ATATTACAGACTCCTCAACA+AGG | 0.696962 | 4_1:-79106490 | None:intergenic |
| AAATATCTCTGATATGACGA+GGG | 0.711372 | 4_1:-79104632 | None:intergenic |
| AGACAAGATAACTCACAGAG+AGG | 0.740642 | 4_1:+79103400 | Msa0575270:CDS |
| TTACAGACTCCTCAACAAGG+AGG | 0.770291 | 4_1:-79106487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAGAATTGATTAT+TGG | - | chr4_1:79105420-79105439 | None:intergenic | 10.0% |
| !! | ATGTATATCATAAATTTAAT+TGG | - | chr4_1:79106197-79106216 | None:intergenic | 10.0% |
| !! | TCAATTCATCAATAAATAAA+GGG | - | chr4_1:79103784-79103803 | None:intergenic | 15.0% |
| !! | TTCAATTCATCAATAAATAA+AGG | - | chr4_1:79103785-79103804 | None:intergenic | 15.0% |
| !! | AGTGTAGATTAAAAAAAAAA+AGG | - | chr4_1:79103824-79103843 | None:intergenic | 15.0% |
| !!! | TTTTGTTCTAATATATGTTT+GGG | + | chr4_1:79103866-79103885 | Msa0575270:intron | 15.0% |
| !!! | GAAAAACTTTAATGTTTTTT+TGG | + | chr4_1:79106373-79106392 | Msa0575270:three_prime_UTR | 15.0% |
| !!! | AAAAATTATACACCTATTTT+AGG | - | chr4_1:79106409-79106428 | None:intergenic | 15.0% |
| !!! | TATTCAGAATTTTCATTTTT+TGG | + | chr4_1:79106431-79106450 | Msa0575270:three_prime_UTR | 15.0% |
| !! | ACAAGTTAAGAATCTAAAAA+TGG | + | chr4_1:79103576-79103595 | Msa0575270:intron | 20.0% |
| !! | CAAACATATATTAGAACAAA+AGG | - | chr4_1:79103867-79103886 | None:intergenic | 20.0% |
| !!! | CTTTTGTTCTAATATATGTT+TGG | + | chr4_1:79103865-79103884 | Msa0575270:intron | 20.0% |
| !!! | ACATTTTTTTTTGTTCCAAT+GGG | + | chr4_1:79103938-79103957 | Msa0575270:intron | 20.0% |
| !!! | TACAAAATTTGAAACCAAAA+TGG | - | chr4_1:79104464-79104483 | None:intergenic | 20.0% |
| !! | AAACTTGATCATAACTATAT+TGG | + | chr4_1:79104499-79104518 | Msa0575270:intron | 20.0% |
| !!! | TTGATTGCAATTTTTATGTT+AGG | + | chr4_1:79105115-79105134 | Msa0575270:intron | 20.0% |
| !! | AAATCGTATATTGAGAAATA+GGG | - | chr4_1:79105759-79105778 | None:intergenic | 20.0% |
| !! | AAAATCGTATATTGAGAAAT+AGG | - | chr4_1:79105760-79105779 | None:intergenic | 20.0% |
| !! | AAAAAATAACCTAACTACAT+AGG | + | chr4_1:79106071-79106090 | Msa0575270:intron | 20.0% |
| !!! | CATTTTTAAATTCGTGATTT+TGG | - | chr4_1:79106132-79106151 | None:intergenic | 20.0% |
| !! | CAAAATCACGAATTTAAAAA+TGG | + | chr4_1:79106130-79106149 | Msa0575270:intron | 20.0% |
| !! | AATAAAGCATAAAATTGCAT+TGG | + | chr4_1:79106169-79106188 | Msa0575270:intron | 20.0% |
| !!! | AAGTTGATCTTTTTGTTGAT+GGG | - | chr4_1:79103086-79103105 | None:intergenic | 25.0% |
| !!! | AAAGTTGATCTTTTTGTTGA+TGG | - | chr4_1:79103087-79103106 | None:intergenic | 25.0% |
| !! | GAACATCACAATTTTCAAAA+TGG | - | chr4_1:79103458-79103477 | None:intergenic | 25.0% |
| !! | CAAAGATAGAAACATTTTGT+TGG | - | chr4_1:79103670-79103689 | None:intergenic | 25.0% |
| !! | CAACAAAATGTTTCTATCTT+TGG | + | chr4_1:79103668-79103687 | Msa0575270:intron | 25.0% |
| ! | CATCAATAAATAAAGGGAAA+TGG | - | chr4_1:79103778-79103797 | None:intergenic | 25.0% |
| !!! | GACATTTTTTTTTGTTCCAA+TGG | + | chr4_1:79103937-79103956 | Msa0575270:intron | 25.0% |
| ! | ATTACTCTATACTACATGTA+TGG | + | chr4_1:79103999-79104018 | Msa0575270:intron | 25.0% |
| ! | TTACTCTATACTACATGTAT+GGG | + | chr4_1:79104000-79104019 | Msa0575270:intron | 25.0% |
| ! | CATACACACATAAATAGTAT+AGG | - | chr4_1:79104363-79104382 | None:intergenic | 25.0% |
| ! | TGGTGATAAAGTTTAACATA+AGG | - | chr4_1:79104444-79104463 | None:intergenic | 25.0% |
| !! | GTTAAACTTTATCACCATTT+TGG | + | chr4_1:79104447-79104466 | Msa0575270:intron | 25.0% |
| ! | TCTTGTGTATTCTTTCATTA+AGG | + | chr4_1:79104687-79104706 | Msa0575270:intron | 25.0% |
| ! | CATAAAAACTAAGCAAAATC+TGG | + | chr4_1:79104738-79104757 | Msa0575270:intron | 25.0% |
| !!! | TGGCTACTAAATTCTAAAAT+TGG | + | chr4_1:79104953-79104972 | Msa0575270:intron | 25.0% |
| !! | GATTTGGTATATTCTATACA+AGG | - | chr4_1:79104988-79105007 | None:intergenic | 25.0% |
| ! | GTGATGTTAAAAACATGATT+TGG | - | chr4_1:79105004-79105023 | None:intergenic | 25.0% |
| ! | TTGCATATTCTCATTATTGT+TGG | + | chr4_1:79105272-79105291 | Msa0575270:intron | 25.0% |
| !!! | TGTTGGAATTTTGAAGATAA+TGG | + | chr4_1:79105289-79105308 | Msa0575270:intron | 25.0% |
| !! | AATTTTACAAACTAACTACC+TGG | - | chr4_1:79105685-79105704 | None:intergenic | 25.0% |
| ! | AAATCGTGAATAAAGCAAAA+CGG | - | chr4_1:79105731-79105750 | None:intergenic | 25.0% |
| ! | AATCGTATATTGAGAAATAG+GGG | - | chr4_1:79105758-79105777 | None:intergenic | 25.0% |
| !!! | ATCAGACATTTTGAAAATTG+TGG | + | chr4_1:79106104-79106123 | Msa0575270:intron | 25.0% |
| !!! | TCAGACATTTTGAAAATTGT+GGG | + | chr4_1:79106105-79106124 | Msa0575270:intron | 25.0% |
| ! | AATCACGAATTTAAAAATGG+AGG | + | chr4_1:79106133-79106152 | Msa0575270:intron | 25.0% |
| ! | ATCACGAATTTAAAAATGGA+GGG | + | chr4_1:79106134-79106153 | Msa0575270:intron | 25.0% |
| ! | ACTTTCAATGTATACAACAA+TGG | + | chr4_1:79106291-79106310 | Msa0575270:CDS | 25.0% |
| ! | CTTTCAATGTATACAACAAT+GGG | + | chr4_1:79106292-79106311 | Msa0575270:CDS | 25.0% |
| ! | GAGTCTGTAATATATGTTAT+CGG | + | chr4_1:79106500-79106519 | Msa0575270:three_prime_UTR | 25.0% |
| !! | TTGGAAATTGATTTTTGCAG+AGG | - | chr4_1:79102810-79102829 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGATTTGGTTTC+TGG | - | chr4_1:79102937-79102956 | None:intergenic | 30.0% |
| !!! | TGTGGTTTTTGTTGTTGATT+TGG | - | chr4_1:79102944-79102963 | None:intergenic | 30.0% |
| !! | TCTGTTTCTGTTTCTGAAAT+GGG | - | chr4_1:79102969-79102988 | None:intergenic | 30.0% |
| !! | ATCTGTTTCTGTTTCTGAAA+TGG | - | chr4_1:79102970-79102989 | None:intergenic | 30.0% |
| !!! | GATTGGATTTGTTTTGTGTT+AGG | - | chr4_1:79102996-79103015 | None:intergenic | 30.0% |
| !!! | ATTCTTGTGCTTCTTTTTTC+TGG | - | chr4_1:79103225-79103244 | None:intergenic | 30.0% |
| !!! | GTGTTGATTTTCAAGATGTT+TGG | + | chr4_1:79103279-79103298 | Msa0575270:CDS | 30.0% |
| TTCTTCTATGTACATCAGTT+AGG | + | chr4_1:79103475-79103494 | Msa0575270:intron | 30.0% | |
| ! | CATAATTGATCTTTTGCATG+CGG | + | chr4_1:79103527-79103546 | Msa0575270:intron | 30.0% |
| ! | ATAATTGATCTTTTGCATGC+GGG | + | chr4_1:79103528-79103547 | Msa0575270:intron | 30.0% |
| !!! | TTTTTTAACTTGTGCCTTGA+GGG | + | chr4_1:79103691-79103710 | Msa0575270:intron | 30.0% |
| TGGAAACAATCAAAGATTTC+AGG | - | chr4_1:79104026-79104045 | None:intergenic | 30.0% | |
| ATCTTTGATTGTTTCCATGT+TGG | + | chr4_1:79104029-79104048 | Msa0575270:intron | 30.0% | |
| TCTTTGATTGTTTCCATGTT+GGG | + | chr4_1:79104030-79104049 | Msa0575270:intron | 30.0% | |
| AATGTGTTGCAGTAATAAAC+AGG | - | chr4_1:79104299-79104318 | None:intergenic | 30.0% | |
| GTGATTTAGATAGACATCTA+TGG | + | chr4_1:79104384-79104403 | Msa0575270:intron | 30.0% | |
| ! | ATAGACATCTATGGTTAGTT+TGG | + | chr4_1:79104393-79104412 | Msa0575270:intron | 30.0% |
| AAATATCTCTGATATGACGA+GGG | - | chr4_1:79104635-79104654 | None:intergenic | 30.0% | |
| TGGTATATTCTATACAAGGT+AGG | - | chr4_1:79104984-79105003 | None:intergenic | 30.0% | |
| AATCAATGCCTACTTAAAGT+AGG | + | chr4_1:79105050-79105069 | Msa0575270:intron | 30.0% | |
| !!! | GCATGTTTTTTTCAAGAAGT+AGG | + | chr4_1:79105140-79105159 | Msa0575270:intron | 30.0% |
| TGTTGAGTAAGTCAATATGA+TGG | + | chr4_1:79105199-79105218 | Msa0575270:intron | 30.0% | |
| TAACTTAGCAAAGACTTGAT+TGG | - | chr4_1:79105231-79105250 | None:intergenic | 30.0% | |
| CTTCAAGGAAGAATACTAAT+GGG | + | chr4_1:79105314-79105333 | Msa0575270:CDS | 30.0% | |
| !! | TGTTGATAACATGTCATATG+AGG | + | chr4_1:79105382-79105401 | Msa0575270:CDS | 30.0% |
| AACAAAGATGAATGCATGTA+CGG | - | chr4_1:79105485-79105504 | None:intergenic | 30.0% | |
| AGAATTGGTTATGTGAATAC+TGG | + | chr4_1:79105560-79105579 | Msa0575270:CDS | 30.0% | |
| ATCGTATATTGAGAAATAGG+GGG | - | chr4_1:79105757-79105776 | None:intergenic | 30.0% | |
| ! | GTCGGTCAATTTTAAATTTG+AGG | - | chr4_1:79105787-79105806 | None:intergenic | 30.0% |
| ATAGGTAGAAAGAAAAAGGT+CGG | - | chr4_1:79105805-79105824 | None:intergenic | 30.0% | |
| ATGCATAGGTAGAAAGAAAA+AGG | - | chr4_1:79105809-79105828 | None:intergenic | 30.0% | |
| !!! | ATTCTCACTTTTTTTGAGCA+AGG | + | chr4_1:79105898-79105917 | Msa0575270:intron | 30.0% |
| AAATAACCTAACTACATAGG+TGG | + | chr4_1:79106074-79106093 | Msa0575270:intron | 30.0% | |
| CATGTTTAATTCATGAGTAC+AGG | + | chr4_1:79106214-79106233 | Msa0575270:intron | 30.0% | |
| ATCTTTAGATCATCCTTCTA+AGG | + | chr4_1:79106556-79106575 | Msa0575270:three_prime_UTR | 30.0% | |
| AGAATTGTATTTGCCTTAGA+AGG | - | chr4_1:79106572-79106591 | None:intergenic | 30.0% | |
| GAATCAACAAGAATGGGATT+TGG | - | chr4_1:79102829-79102848 | None:intergenic | 35.0% | |
| GGAGAAGAATCAACAAGAAT+GGG | - | chr4_1:79102835-79102854 | None:intergenic | 35.0% | |
| TGGAGAAGAATCAACAAGAA+TGG | - | chr4_1:79102836-79102855 | None:intergenic | 35.0% | |
| !! | AAGACATGTTTGGTTTGGTT+TGG | - | chr4_1:79102860-79102879 | None:intergenic | 35.0% |
| CAGAGCAACAACATATGAAA+TGG | + | chr4_1:79102901-79102920 | Msa0575270:CDS | 35.0% | |
| !! | TTGTTGATTTGGTTTCTGGA+TGG | - | chr4_1:79102933-79102952 | None:intergenic | 35.0% |
| !!! | TGGATTTGTTTTGTGTTAGG+AGG | - | chr4_1:79102993-79103012 | None:intergenic | 35.0% |
| !! | GATTTTCAAGATGTTTGGTG+TGG | + | chr4_1:79103284-79103303 | Msa0575270:CDS | 35.0% |
| GATCAATTATGTGCAGCAAA+GGG | - | chr4_1:79103518-79103537 | None:intergenic | 35.0% | |
| AGATCAATTATGTGCAGCAA+AGG | - | chr4_1:79103519-79103538 | None:intergenic | 35.0% | |
| !! | ATTCTTAACTTGTGCCCTAA+GGG | - | chr4_1:79103569-79103588 | None:intergenic | 35.0% |
| !!! | GTTTTTTAACTTGTGCCTTG+AGG | + | chr4_1:79103690-79103709 | Msa0575270:intron | 35.0% |
| TCCAATGGGTGCTTATAATT+AGG | + | chr4_1:79103952-79103971 | Msa0575270:intron | 35.0% | |
| CCAATGGGTGCTTATAATTA+GGG | + | chr4_1:79103953-79103972 | Msa0575270:intron | 35.0% | |
| AAACAAAAAACAGCCCAACA+TGG | - | chr4_1:79104046-79104065 | None:intergenic | 35.0% | |
| TATAGGAAAGAATGCAGTCA+AGG | - | chr4_1:79104346-79104365 | None:intergenic | 35.0% | |
| ! | ATTTTCACAGCATGCTCTTT+TGG | + | chr4_1:79104597-79104616 | Msa0575270:CDS | 35.0% |
| GAAATATCTCTGATATGACG+AGG | - | chr4_1:79104636-79104655 | None:intergenic | 35.0% | |
| ! | TTCGTCTGATGATTTTTCTG+AGG | + | chr4_1:79104653-79104672 | Msa0575270:CDS | 35.0% |
| GGTCTGTCTATATCAAAACA+TGG | + | chr4_1:79104759-79104778 | Msa0575270:intron | 35.0% | |
| TGTGTAGCACTTGAATGTAT+TGG | + | chr4_1:79104933-79104952 | Msa0575270:intron | 35.0% | |
| AATGCCTACTTAAAGTAGGA+AGG | + | chr4_1:79105054-79105073 | Msa0575270:intron | 35.0% | |
| AACACCTTCCTACTTTAAGT+AGG | - | chr4_1:79105061-79105080 | None:intergenic | 35.0% | |
| !! | CTTAAAGTAGGAAGGTGTTA+TGG | + | chr4_1:79105062-79105081 | Msa0575270:intron | 35.0% |
| ATGTAGTAAATTTCCCTGCA+TGG | + | chr4_1:79105169-79105188 | Msa0575270:intron | 35.0% | |
| GCTTCAAGGAAGAATACTAA+TGG | + | chr4_1:79105313-79105332 | Msa0575270:CDS | 35.0% | |
| GACAACATATCAATAGCTTG+AGG | - | chr4_1:79105462-79105481 | None:intergenic | 35.0% | |
| ACAAAGATGAATGCATGTAC+GGG | - | chr4_1:79105484-79105503 | None:intergenic | 35.0% | |
| TGGACTTAAAGAAGATGAGA+TGG | + | chr4_1:79105580-79105599 | Msa0575270:CDS | 35.0% | |
| ATGAGATGGAACCTTACATA+AGG | + | chr4_1:79105594-79105613 | Msa0575270:CDS | 35.0% | |
| ! | AGCTTAGTCTTCCTTATGTA+AGG | - | chr4_1:79105608-79105627 | None:intergenic | 35.0% |
| ! | CTTTCTACCTATGCATTTTG+AGG | + | chr4_1:79105813-79105832 | Msa0575270:intron | 35.0% |
| TGTTGAAGATGTAGTAAGTG+AGG | + | chr4_1:79105841-79105860 | Msa0575270:intron | 35.0% | |
| CTTAGTTGGTTATATGACAC+AGG | + | chr4_1:79105867-79105886 | Msa0575270:intron | 35.0% | |
| TCATCAAATACGTTTGTCGA+TGG | + | chr4_1:79106047-79106066 | Msa0575270:intron | 35.0% | |
| GTTTAATTCATGAGTACAGG+AGG | + | chr4_1:79106217-79106236 | Msa0575270:intron | 35.0% | |
| GGACATTCTCATCCTAAAAT+AGG | + | chr4_1:79106394-79106413 | Msa0575270:three_prime_UTR | 35.0% | |
| ATATTACAGACTCCTCAACA+AGG | - | chr4_1:79106493-79106512 | None:intergenic | 35.0% | |
| !! | CATGTTTGGTTTGGTTTGGT+TGG | - | chr4_1:79102856-79102875 | None:intergenic | 40.0% |
| CACAGAAGACATGTTTGGTT+TGG | - | chr4_1:79102865-79102884 | None:intergenic | 40.0% | |
| TGTGTCACAGAAGACATGTT+TGG | - | chr4_1:79102870-79102889 | None:intergenic | 40.0% | |
| !! | CTGTTTCTGAAATGGGTTTG+TGG | - | chr4_1:79102962-79102981 | None:intergenic | 40.0% |
| CAGAGATGAAATTGTGGACT+TGG | - | chr4_1:79103027-79103046 | None:intergenic | 40.0% | |
| GAGAAGCAGAGATGAAATTG+TGG | - | chr4_1:79103033-79103052 | None:intergenic | 40.0% | |
| !! | TGAGGTGGTTGTTGTTTCAT+TGG | - | chr4_1:79103057-79103076 | None:intergenic | 40.0% |
| !! | TTTGTTGATGGGTTGTTGTG+AGG | - | chr4_1:79103075-79103094 | None:intergenic | 40.0% |
| AGTGCATCCTAAACCTCTAA+AGG | - | chr4_1:79103126-79103145 | None:intergenic | 40.0% | |
| TCTGCTGAAAATCCAATTCC+AGG | - | chr4_1:79103311-79103330 | None:intergenic | 40.0% | |
| AGACAAGATAACTCACAGAG+AGG | + | chr4_1:79103400-79103419 | Msa0575270:CDS | 40.0% | |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr4_1:79103551-79103570 | Msa0575270:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr4_1:79103552-79103571 | Msa0575270:intron | 40.0% |
| !! | GATTCTTAACTTGTGCCCTA+AGG | - | chr4_1:79103570-79103589 | None:intergenic | 40.0% |
| CCCTAATTATAAGCACCCAT+TGG | - | chr4_1:79103956-79103975 | None:intergenic | 40.0% | |
| TCCTTGCATACATGTACCTA+GGG | - | chr4_1:79104272-79104291 | None:intergenic | 40.0% | |
| TGCTGTGAAAATGTCAGGAT+CGG | - | chr4_1:79104589-79104608 | None:intergenic | 40.0% | |
| TCAACATCATCTACCATGCA+GGG | - | chr4_1:79105185-79105204 | None:intergenic | 40.0% | |
| ! | TTGAAGATAATGGCGCTTCA+AGG | + | chr4_1:79105299-79105318 | Msa0575270:intron | 40.0% |
| CAAGGAAGAATACTAATGGG+AGG | + | chr4_1:79105317-79105336 | Msa0575270:CDS | 40.0% | |
| CACGTGATCTTTACAGAGAT+TGG | + | chr4_1:79105351-79105370 | Msa0575270:CDS | 40.0% | |
| CATTCAGCCTCAAAATGCAT+AGG | - | chr4_1:79105823-79105842 | None:intergenic | 40.0% | |
| AGTAAGTGAGGCAACTTAGT+TGG | + | chr4_1:79105853-79105872 | Msa0575270:intron | 40.0% | |
| TTGGTTATATGACACAGGCT+AGG | + | chr4_1:79105872-79105891 | Msa0575270:intron | 40.0% | |
| TTTCTGCCACCTATGTAGTT+AGG | - | chr4_1:79106083-79106102 | None:intergenic | 40.0% | |
| ! | TTTGAAGCAGATGATGAGCT+TGG | + | chr4_1:79106242-79106261 | Msa0575270:CDS | 40.0% |
| TTGAAGCAGATGATGAGCTT+GGG | + | chr4_1:79106243-79106262 | Msa0575270:CDS | 40.0% | |
| CAACAAGGAGGCTAAAAGTT+TGG | - | chr4_1:79106478-79106497 | None:intergenic | 40.0% | |
| ! | AACTTTTAGCCTCCTTGTTG+AGG | + | chr4_1:79106478-79106497 | Msa0575270:three_prime_UTR | 40.0% |
| ! | GCAGCTACCTTTAGAGGTTT+AGG | + | chr4_1:79103116-79103135 | Msa0575270:CDS | 45.0% |
| TGATTCGTGCATCAGCAGAT+TGG | + | chr4_1:79103180-79103199 | Msa0575270:CDS | 45.0% | |
| CCTTGCATACATGTACCTAG+GGG | - | chr4_1:79104271-79104290 | None:intergenic | 45.0% | |
| CTCCTTGCATACATGTACCT+AGG | - | chr4_1:79104273-79104292 | None:intergenic | 45.0% | |
| !! | CCGGAAAAGAGAAGGTATCT+GGG | - | chr4_1:79104563-79104582 | None:intergenic | 45.0% |
| ! | CCCAGATACCTTCTCTTTTC+CGG | + | chr4_1:79104560-79104579 | Msa0575270:CDS | 45.0% |
| !! | TCCGGAAAAGAGAAGGTATC+TGG | - | chr4_1:79104564-79104583 | None:intergenic | 45.0% |
| ! | AAAATGTCAGGATCGGTGTC+CGG | - | chr4_1:79104582-79104601 | None:intergenic | 45.0% |
| GAGCATGCTGTGAAAATGTC+AGG | - | chr4_1:79104594-79104613 | None:intergenic | 45.0% | |
| CTCAACATCATCTACCATGC+AGG | - | chr4_1:79105186-79105205 | None:intergenic | 45.0% | |
| TGACAGCAATTGCTTGAGCT+CGG | + | chr4_1:79105533-79105552 | Msa0575270:intron | 45.0% | |
| ! | CAAAAAGTGCAGCATTTGCC+AGG | + | chr4_1:79105664-79105683 | Msa0575270:CDS | 45.0% |
| TTACAGACTCCTCAACAAGG+AGG | - | chr4_1:79106490-79106509 | None:intergenic | 45.0% | |
| AATTGTGGACTTGGAGCGTG+TGG | - | chr4_1:79103018-79103037 | None:intergenic | 50.0% | |
| !! | GTTGATGGGTTGTTGTGAGG+TGG | - | chr4_1:79103072-79103091 | None:intergenic | 50.0% |
| TCTGCAGCAGCTACCTTTAG+AGG | + | chr4_1:79103110-79103129 | Msa0575270:CDS | 50.0% | |
| ! | AGAGGTTTAGGATGCACTGC+CGG | + | chr4_1:79103128-79103147 | Msa0575270:CDS | 50.0% |
| !! | TCAGCAGATTGGCCTCATCA+AGG | + | chr4_1:79103191-79103210 | Msa0575270:CDS | 50.0% |
| !! | CAGCAGATTGGCCTCATCAA+GGG | + | chr4_1:79103192-79103211 | Msa0575270:CDS | 50.0% |
| ! | CTGGCTTTCTTCCCTTGATG+AGG | - | chr4_1:79103206-79103225 | None:intergenic | 50.0% |
| !! | CAAGATGTTTGGTGTGGTCC+TGG | + | chr4_1:79103290-79103309 | Msa0575270:CDS | 50.0% |
| !! | GTTTGGTGTGGTCCTGGAAT+TGG | + | chr4_1:79103296-79103315 | Msa0575270:CDS | 50.0% |
| AATGCTAACCTGTGCCCTCA+AGG | - | chr4_1:79103708-79103727 | None:intergenic | 50.0% | |
| AAACACTGCGTGCACGCATT+GGG | - | chr4_1:79104248-79104267 | None:intergenic | 50.0% | |
| CCCCTAGGTACATGTATGCA+AGG | + | chr4_1:79104268-79104287 | Msa0575270:intron | 50.0% | |
| AGCCTTCATCTTCCTTCCGA+AGG | + | chr4_1:79104523-79104542 | Msa0575270:intron | 50.0% | |
| ! | ATCGGTGTCCGGAAAAGAGA+AGG | - | chr4_1:79104571-79104590 | None:intergenic | 50.0% |
| ! | CTTGAGCTCGGTGAGAGAAT+TGG | + | chr4_1:79105545-79105564 | Msa0575270:CDS | 50.0% |
| AAGCAGATGATGAGCTTGGG+AGG | + | chr4_1:79106246-79106265 | Msa0575270:CDS | 50.0% | |
| ! | CAACCTGCTGCTTACACACA+GGG | - | chr4_1:79106337-79106356 | None:intergenic | 50.0% |
| TGGACTTGGAGCGTGTGGAT+TGG | - | chr4_1:79103013-79103032 | None:intergenic | 55.0% | |
| ! | CGACACCTGTTGAGAAGCAC+CGG | - | chr4_1:79103150-79103169 | None:intergenic | 55.0% |
| CGGTGCTTCTCAACAGGTGT+CGG | + | chr4_1:79103148-79103167 | Msa0575270:CDS | 55.0% | |
| !! | TTCTCAACAGGTGTCGGTGC+CGG | + | chr4_1:79103154-79103173 | Msa0575270:CDS | 55.0% |
| GCTGATGCACGAATCACTGC+CGG | - | chr4_1:79103176-79103195 | None:intergenic | 55.0% | |
| ! | AACTTGTGCCTTGAGGGCAC+AGG | + | chr4_1:79103697-79103716 | Msa0575270:intron | 55.0% |
| GAAACACTGCGTGCACGCAT+TGG | - | chr4_1:79104249-79104268 | None:intergenic | 55.0% | |
| CGCCTTCGGAAGGAAGATGA+AGG | - | chr4_1:79104528-79104547 | None:intergenic | 55.0% | |
| ! | GCAACCTGCTGCTTACACAC+AGG | - | chr4_1:79106338-79106357 | None:intergenic | 55.0% |
| CACTGCCGGTGCTTCTCAAC+AGG | + | chr4_1:79103142-79103161 | Msa0575270:CDS | 60.0% | |
| GTGCACGCAGTGTTTCCCCT+AGG | + | chr4_1:79104253-79104272 | Msa0575270:intron | 60.0% | |
| GGTAGACAGCAGTGCGCCTT+CGG | - | chr4_1:79104542-79104561 | None:intergenic | 60.0% | |
| CTGCCCTGTGTGTAAGCAGC+AGG | + | chr4_1:79106331-79106350 | Msa0575270:CDS | 60.0% | |
| GACAGCAGTGCGCCTTCGGA+AGG | - | chr4_1:79104538-79104557 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79102800 | 79106609 | 79102800 | ID=Msa0575270;Name=Msa0575270 |
| chr4_1 | mRNA | 79102800 | 79106609 | 79102800 | ID=Msa0575270-mRNA-1;Parent=Msa0575270;Name=Msa0575270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=73|1|1|1|1|1|5|239|359 |
| chr4_1 | exon | 79102800 | 79103421 | 79102800 | ID=Msa0575270-mRNA-1:exon:28160;Parent=Msa0575270-mRNA-1 |
| chr4_1 | exon | 79104525 | 79104674 | 79104525 | ID=Msa0575270-mRNA-1:exon:28161;Parent=Msa0575270-mRNA-1 |
| chr4_1 | exon | 79105305 | 79105403 | 79105305 | ID=Msa0575270-mRNA-1:exon:28162;Parent=Msa0575270-mRNA-1 |
| chr4_1 | exon | 79105539 | 79105685 | 79105539 | ID=Msa0575270-mRNA-1:exon:28163;Parent=Msa0575270-mRNA-1 |
| chr4_1 | exon | 79106236 | 79106609 | 79106236 | ID=Msa0575270-mRNA-1:exon:28164;Parent=Msa0575270-mRNA-1 |
| chr4_1 | five_prime_UTR | 79102800 | 79102872 | 79102800 | ID=Msa0575270-mRNA-1:five_prime_utr;Parent=Msa0575270-mRNA-1 |
| chr4_1 | CDS | 79102873 | 79103421 | 79102873 | ID=Msa0575270-mRNA-1:cds;Parent=Msa0575270-mRNA-1 |
| chr4_1 | CDS | 79104525 | 79104674 | 79104525 | ID=Msa0575270-mRNA-1:cds;Parent=Msa0575270-mRNA-1 |
| chr4_1 | CDS | 79105305 | 79105403 | 79105305 | ID=Msa0575270-mRNA-1:cds;Parent=Msa0575270-mRNA-1 |
| chr4_1 | CDS | 79105539 | 79105685 | 79105539 | ID=Msa0575270-mRNA-1:cds;Parent=Msa0575270-mRNA-1 |
| chr4_1 | CDS | 79106236 | 79106370 | 79106236 | ID=Msa0575270-mRNA-1:cds;Parent=Msa0575270-mRNA-1 |
| chr4_1 | three_prime_UTR | 79106371 | 79106609 | 79106371 | ID=Msa0575270-mRNA-1:three_prime_utr;Parent=Msa0575270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
