AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576700 MtrunA17_Chr4g0031961 84.713 314 21 3 1 305 1 296 5.43e-157 441
Msa0576700 MtrunA17_Chr7g0255711 40.000 230 78 7 8 214 5 197 1.55e-33 125
Msa0576700 MtrunA17_Chr4g0067981 58.824 68 21 1 124 184 210 277 1.58e-18 86.3
Msa0576700 MtrunA17_Chr2g0294911 44.340 106 45 2 124 215 206 311 2.36e-18 85.9
Msa0576700 MtrunA17_Chr3g0137101 45.361 97 43 2 128 217 197 290 5.33e-18 84.7
Msa0576700 MtrunA17_Chr4g0074401 63.934 61 15 1 126 179 200 260 2.10e-17 82.8
Msa0576700 MtrunA17_Chr2g0304841 62.712 59 15 1 128 179 212 270 4.38e-17 82.0
Msa0576700 MtrunA17_Chr4g0074411 63.934 61 15 1 126 179 198 258 1.16e-16 80.5
Msa0576700 MtrunA17_Chr1g0161431 51.948 77 26 2 111 180 186 258 5.58e-16 78.6
Msa0576700 MtrunA17_Chr8g0376881 48.315 89 37 3 111 191 190 277 1.78e-15 77.0
Msa0576700 MtrunA17_Chr1g0149841 41.284 109 42 3 128 218 190 294 2.31e-15 76.6
Msa0576700 MtrunA17_Chr7g0275891 39.259 135 60 4 128 241 190 323 8.11e-15 74.3
Msa0576700 MtrunA17_Chr3g0123131 34.000 150 81 5 100 238 176 318 3.83e-14 73.2
Msa0576700 MtrunA17_Chr1g0149831 52.113 71 26 2 128 194 127 193 1.79e-13 68.9
Msa0576700 MtrunA17_Chr6g0473731 49.206 63 25 1 126 181 92 154 2.18e-13 70.5
Msa0576700 MtrunA17_Chr4g0074421 53.333 60 21 1 124 176 128 187 3.49e-12 64.7
Msa0576700 MtrunA17_Chr4g0054981 34.921 126 62 3 68 175 240 363 8.68e-12 65.9
Msa0576700 MtrunA17_Chr1g0149851 39.560 91 33 2 128 196 190 280 1.42e-11 65.1
Msa0576700 MtrunA17_Chr5g0400241 50.000 60 23 1 128 180 310 369 5.26e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576700 AT3G46640.2 55.556 234 71 6 1 206 1 229 2.95e-70 221
Msa0576700 AT3G46640.1 55.556 234 71 6 1 206 1 229 2.95e-70 221
Msa0576700 AT3G46640.3 55.556 234 71 6 1 206 1 229 1.35e-69 219
Msa0576700 AT5G59570.2 51.373 255 90 10 11 243 25 267 8.42e-65 206
Msa0576700 AT5G59570.1 51.373 255 90 10 11 243 25 267 8.42e-65 206
Msa0576700 AT3G10760.1 70.787 89 15 2 124 201 100 188 1.85e-30 118
Msa0576700 AT5G05090.1 72.941 85 15 2 125 201 77 161 2.86e-30 115
Msa0576700 AT2G40970.1 64.894 94 17 2 124 201 100 193 3.79e-30 115
Msa0576700 AT3G16857.3 47.872 94 37 2 98 184 141 229 6.88e-19 87.8
Msa0576700 AT3G16857.2 47.872 94 37 2 98 184 211 299 9.36e-19 87.4
Msa0576700 AT3G16857.1 47.872 94 37 2 98 184 211 299 1.00e-18 87.4
Msa0576700 AT2G25180.1 38.509 161 73 5 32 185 117 258 6.90e-18 84.7
Msa0576700 AT5G58080.1 50.633 79 27 2 126 192 191 269 1.65e-16 80.5
Msa0576700 AT2G01760.3 52.632 76 26 2 128 193 134 209 3.94e-16 78.2
Msa0576700 AT2G01760.1 52.632 76 26 2 128 193 199 274 8.29e-16 77.8
Msa0576700 AT2G01760.2 52.632 76 26 2 128 193 227 302 1.20e-15 77.4
Msa0576700 AT4G31920.1 36.290 124 62 3 128 244 182 295 2.10e-13 71.2
Msa0576700 AT5G44190.1 45.946 74 31 2 128 194 146 217 9.52e-12 65.9
Msa0576700 AT5G44190.2 45.946 74 31 2 128 194 146 217 1.18e-11 65.5
Msa0576700 AT1G67710.2 38.776 98 46 3 95 181 94 188 2.75e-11 64.7
Msa0576700 AT1G67710.3 38.776 98 46 3 95 181 85 179 3.31e-11 64.3
Msa0576700 AT1G67710.1 38.776 98 46 3 95 181 159 253 4.80e-11 63.9
Msa0576700 AT2G20570.1 35.088 114 63 2 81 187 109 218 5.66e-11 63.5
Msa0576700 AT5G07210.2 40.789 76 36 2 117 183 210 285 9.10e-11 63.2
Msa0576700 AT5G07210.1 40.789 76 36 2 117 183 218 293 9.32e-11 63.2

Find 153 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGACCATTCATTATTCT+AGG 0.208986 4_1:-80766876 Msa0576700:three_prime_UTR
AGAAGAAGGTTAACACTTTC+AGG 0.212736 4_1:+80767183 None:intergenic
CTATGATGCATCATATTAAA+TGG 0.267208 4_1:+80768983 None:intergenic
TCACAGATTTACAAACTTCT+TGG 0.277317 4_1:-80767372 Msa0576700:three_prime_UTR
GGAGTGAGATCGTGGAGGTT+AGG 0.288087 4_1:+80769829 None:intergenic
ACACACCCAATATAAGAAAA+TGG 0.290247 4_1:+80767020 None:intergenic
CATTTAATATGATGCATCAT+AGG 0.291545 4_1:-80768982 Msa0576700:CDS
GCTTGAACAAGATCTATAAA+AGG 0.294175 4_1:-80766825 Msa0576700:three_prime_UTR
TTAGAATCAGCTATCTGTTT+AGG 0.301320 4_1:+80767278 None:intergenic
GATGAGTTTGCCTCCTCCTT+CGG 0.309025 4_1:-80769032 Msa0576700:CDS
GAGTGAGATCGTGGAGGTTA+GGG 0.316953 4_1:+80769830 None:intergenic
TGAAGCCTTTCTTGTGGATA+AGG 0.335131 4_1:-80766517 Msa0576700:three_prime_UTR
ACATCATCCACATGGGCATA+TGG 0.344716 4_1:-80769056 Msa0576700:CDS
GTGGATGTTGTTGCTCATCT+TGG 0.347586 4_1:-80769454 Msa0576700:CDS
ATGAGTTTGCCTCCTCCTTC+GGG 0.352579 4_1:-80769031 Msa0576700:CDS
AAACAAGAATTCTCAAGGTT+GGG 0.364633 4_1:+80766902 None:intergenic
CAAATGGTGGGACCCCTTCC+CGG 0.367038 4_1:+80766765 None:intergenic
AGGGGTAACCTTGGCGCAAC+TGG 0.377114 4_1:+80766650 None:intergenic
TTACACAAGAGGCTGTTTCC+AGG 0.378319 4_1:-80766714 Msa0576700:three_prime_UTR
CGGGAAGGGGTCCCACCATT+TGG 0.381455 4_1:-80766764 Msa0576700:three_prime_UTR
CTCGAAGGTGGTGGTGGATA+AGG 0.394424 4_1:+80769112 None:intergenic
GCTCCTGCATACGCAGGGTC+CGG 0.400711 4_1:-80766784 Msa0576700:three_prime_UTR
GAACAACGGAGACGATAAAA+AGG 0.405625 4_1:-80769516 Msa0576700:CDS
TATATTGGGTGTGTAGGACT+AGG 0.412630 4_1:-80767011 Msa0576700:three_prime_UTR
CATCATCCACATGGGCATAT+GGG 0.413116 4_1:-80769055 Msa0576700:CDS
TCAAATGGAGGGCATGGAAA+TGG 0.414953 4_1:-80769196 Msa0576700:CDS
AAGAGAGTACGGAGAGGCTC+CGG 0.421773 4_1:+80769754 None:intergenic
CAAATAAAATAATACTAATC+AGG 0.422932 4_1:+80767054 None:intergenic
GCATACGCAGGGTCCGGGAA+GGG 0.423667 4_1:-80766778 Msa0576700:three_prime_UTR
CATACGCAGGGTCCGGGAAG+GGG 0.429334 4_1:-80766777 Msa0576700:three_prime_UTR
TCAAATGCTAATCATTCAAA+TGG 0.429533 4_1:-80769211 Msa0576700:CDS
TGATTGTTCCGGAGTTGCTT+CGG 0.434817 4_1:+80769692 None:intergenic
TGAGGATGAGAATGTGGATT+CGG 0.435504 4_1:+80768950 None:intergenic
TTCCCGGACCCTGCGTATGC+AGG 0.435681 4_1:+80766781 None:intergenic
TGGATGTTGTTGCTCATCTT+GGG 0.442275 4_1:-80769453 Msa0576700:CDS
CCGCAGAGTTTGCATGAAAC+CGG 0.443486 4_1:-80769259 Msa0576700:CDS
AACATTAAGATATACTAATC+AGG 0.443774 4_1:+80767077 None:intergenic
TTCCATGGCTTTGATCCCAC+CGG 0.445349 4_1:-80769803 Msa0576700:CDS
AGTGGAAGCTGAAGCAGATT+CGG 0.449529 4_1:-80769545 Msa0576700:CDS
ACGTGTAACGGAGTGGGAAA+AGG 0.453107 4_1:-80769857 Msa0576700:CDS
AGAGAGTACGGAGAGGCTCC+GGG 0.454039 4_1:+80769755 None:intergenic
GAACCCGAGCGAGATGGATC+AGG 0.456693 4_1:-80769613 Msa0576700:CDS
CTGAAAGCGGAAGCGAGCTC+CGG 0.460721 4_1:+80769784 None:intergenic
TGATGTCCCATACCAATCAT+AGG 0.460751 4_1:+80769073 None:intergenic
AAGGTCACGGGTTCAAGTCC+TGG 0.462983 4_1:+80766696 None:intergenic
AAAACAAGAATTCTCAAGGT+TGG 0.463126 4_1:+80766901 None:intergenic
TCATGCAAACTCTGCGGCAC+AGG 0.465750 4_1:+80769265 None:intergenic
GATTTGATGAGTGATTGTTC+CGG 0.471479 4_1:+80769681 None:intergenic
ACAGCTACATAAAAGATTTG+TGG 0.472539 4_1:-80769473 Msa0576700:CDS
ACAAGCCTTATCCACAAGAA+AGG 0.474142 4_1:+80766512 None:intergenic
TGTTACAATGAGAGTGGAAA+GGG 0.475079 4_1:-80766973 Msa0576700:three_prime_UTR
CTCCTGCATACGCAGGGTCC+GGG 0.482619 4_1:-80766783 Msa0576700:three_prime_UTR
CGATCTCACTCCTCTTTCCA+TGG 0.482732 4_1:-80769818 Msa0576700:CDS
ATATGATGCATCATAGGGAT+TGG 0.484646 4_1:-80768976 Msa0576700:CDS
ATGAGAATGATTAGCAGAAC+CGG 0.486272 4_1:+80769240 None:intergenic
AGATTCAAATGTTTGATTGT+TGG 0.488040 4_1:-80767501 Msa0576700:exon
ATTTAATATGATGCATCATA+GGG 0.488329 4_1:-80768981 Msa0576700:CDS
ATGCAGTTGATGAATGTTGA+AGG 0.492393 4_1:-80769403 Msa0576700:intron
TTCCGCTTTCAGCATCTCCC+CGG 0.493661 4_1:-80769773 Msa0576700:CDS
TAGAAATGTTACAATGAGAG+TGG 0.495630 4_1:-80766979 Msa0576700:three_prime_UTR
ACCACAGAGCAGGTTACAAA+TGG 0.503255 4_1:+80767109 None:intergenic
ATCCCTTGATCAAAAGAACT+AGG 0.505539 4_1:-80766849 Msa0576700:three_prime_UTR
ATCATACTCGAAGGTGGTGG+TGG 0.507063 4_1:+80769106 None:intergenic
TGCATACGCAGGGTCCGGGA+AGG 0.509378 4_1:-80766779 Msa0576700:three_prime_UTR
CTTGAACAAGATCTATAAAA+GGG 0.510111 4_1:-80766824 Msa0576700:three_prime_UTR
CGTGTAACGGAGTGGGAAAA+GGG 0.517852 4_1:-80769856 Msa0576700:CDS
TCTCTTCTCCGAAGCAACTC+CGG 0.518098 4_1:-80769700 Msa0576700:CDS
CGAGCGAGATGGATCAGGTT+CGG 0.519486 4_1:-80769608 Msa0576700:CDS
TAGGCGGTGATTGTGAGTTA+AGG 0.520176 4_1:-80767319 Msa0576700:three_prime_UTR
AAAGCGGAAGCGAGCTCCGG+TGG 0.521066 4_1:+80769787 None:intergenic
GCTGCGTACAATACACCAAA+TGG 0.522967 4_1:+80766749 None:intergenic
GACGAAGAACCCGAGCGAGA+TGG 0.525147 4_1:-80769619 Msa0576700:CDS
ACCGCCTACATTTACGTGAC+AGG 0.525269 4_1:+80767334 None:intergenic
AATCATTCAAATGGAGGGCA+TGG 0.528339 4_1:-80769202 Msa0576700:CDS
AGATTCTGTTACAGAAGAAG+TGG 0.528651 4_1:-80769563 Msa0576700:CDS
TGCAGGAGCTTCAGTGCACC+AGG 0.530180 4_1:+80766798 None:intergenic
CGAACCTGATCCATCTCGCT+CGG 0.534136 4_1:+80769609 None:intergenic
GTTGTTGTCATGTGACTGTA+AGG 0.540289 4_1:+80766677 None:intergenic
AAAAGATGATCAGAAGAAGA+AGG 0.541009 4_1:+80769298 None:intergenic
GAACCTGATCCATCTCGCTC+GGG 0.541572 4_1:+80769610 None:intergenic
ATGTCAATGCCGCCTATGAT+TGG 0.542928 4_1:-80769085 Msa0576700:CDS
GACATATGAGGATGAGAATG+TGG 0.546426 4_1:+80768944 None:intergenic
AACAAGAATTCTCAAGGTTG+GGG 0.547453 4_1:+80766903 None:intergenic
ACTTTATGAAGCCTTTCTTG+TGG 0.547792 4_1:-80766523 Msa0576700:three_prime_UTR
ACGAAGAACGTGTAACGGAG+TGG 0.550873 4_1:-80769864 Msa0576700:CDS
AATGCTAATCATTCAAATGG+AGG 0.554348 4_1:-80769208 Msa0576700:CDS
TGCATAGATCTTGTTCAAGA+GGG 0.554891 4_1:+80766631 None:intergenic
ATCATCCACATGGGCATATG+GGG 0.557841 4_1:-80769054 Msa0576700:CDS
CTAGAACCACCCGAAGGAGG+AGG 0.558990 4_1:+80769022 None:intergenic
CTATCATTGGAAGACATATG+AGG 0.559295 4_1:+80768932 None:intergenic
GGGATCAAAGCCATGGAAAG+AGG 0.559832 4_1:+80769808 None:intergenic
ATGCCGCCTATGATTGGTAT+GGG 0.560585 4_1:-80769079 Msa0576700:CDS
AATTCCTGTCACGTAAATGT+AGG 0.561916 4_1:-80767338 Msa0576700:three_prime_UTR
ATAAAACCTAGAATAATGAA+TGG 0.566088 4_1:+80766870 None:intergenic
CTGCATAGATCTTGTTCAAG+AGG 0.566537 4_1:+80766630 None:intergenic
GTCATGTGACTGTAAGGTCA+CGG 0.567657 4_1:+80766683 None:intergenic
GGTTGACGTCGAAGAGAGTA+CGG 0.568518 4_1:+80769743 None:intergenic
AATTTGTTTGTGCAATGTAG+AGG 0.569279 4_1:+80767460 None:intergenic
CTCCGGTGGGATCAAAGCCA+TGG 0.569390 4_1:+80769801 None:intergenic
GTTCGGATTCAAGAAAACAT+AGG 0.571081 4_1:-80769591 Msa0576700:CDS
AGATCTATAAAAGGGCAACC+TGG 0.574490 4_1:-80766816 Msa0576700:three_prime_UTR
AATGCCGCCTATGATTGGTA+TGG 0.579585 4_1:-80769080 Msa0576700:CDS
CTAGAATAATGAATGGTCAC+AGG 0.580291 4_1:+80766877 None:intergenic
ATGCTAATCATTCAAATGGA+GGG 0.580774 4_1:-80769207 Msa0576700:CDS
CTTTATTTGAAGAGAATGCA+AGG 0.583827 4_1:-80769337 Msa0576700:CDS
CAACTTTACCAGTTGCGCCA+AGG 0.585916 4_1:-80766658 Msa0576700:three_prime_UTR
TCATGTGACTGTAAGGTCAC+GGG 0.586314 4_1:+80766684 None:intergenic
ACTGAAGCTCCTGCATACGC+AGG 0.586588 4_1:-80766790 Msa0576700:three_prime_UTR
CAAATTGTAATTTAGCTCCG+TGG 0.586773 4_1:+80767415 None:intergenic
AACAAACTGAATGGGTGAAG+AGG 0.590082 4_1:-80769896 None:intergenic
GGTGGTGGTGGATAAGGCAT+AGG 0.595338 4_1:+80769118 None:intergenic
CTCCGGGGAGATGCTGAAAG+CGG 0.595726 4_1:+80769771 None:intergenic
GAACATTGATACCACAGAGC+AGG 0.597922 4_1:+80767099 None:intergenic
TGGAAAGAGGAGTGAGATCG+TGG 0.601806 4_1:+80769821 None:intergenic
GCGTACAATACACCAAATGG+TGG 0.601920 4_1:+80766752 None:intergenic
AGGTAAAACAAGAATTCTCA+AGG 0.603233 4_1:+80766897 None:intergenic
CTGAAGCTCCTGCATACGCA+GGG 0.605623 4_1:-80766789 Msa0576700:three_prime_UTR
ATTGCACAAACAAATTCTTG+AGG 0.608904 4_1:-80767453 Msa0576700:three_prime_UTR
ATGTTACAATGAGAGTGGAA+AGG 0.612203 4_1:-80766974 Msa0576700:three_prime_UTR
AAGAGAGAGTGTGTTGCGAG+AGG 0.612371 4_1:+80769717 None:intergenic
TTTATTTGAAGAGAATGCAA+GGG 0.613259 4_1:-80769336 Msa0576700:CDS
GACATCATACTCGAAGGTGG+TGG 0.615415 4_1:+80769103 None:intergenic
AGCAATGGTTCTGAAGAAGA+AGG 0.615488 4_1:+80767169 None:intergenic
GAGCTAGAACCACCCGAAGG+AGG 0.617421 4_1:+80769019 None:intergenic
GGAGGGCATGGAAATGGACA+TGG 0.620162 4_1:-80769190 Msa0576700:CDS
GGCATTGACATCATACTCGA+AGG 0.620560 4_1:+80769097 None:intergenic
CTCATCCCCATATGCCCATG+TGG 0.624417 4_1:+80769049 None:intergenic
GAGAGTACGGAGAGGCTCCG+GGG 0.626074 4_1:+80769756 None:intergenic
AGTTTGCCTCCTCCTTCGGG+TGG 0.628086 4_1:-80769028 Msa0576700:CDS
CGAAGAACGTGTAACGGAGT+GGG 0.629837 4_1:-80769863 Msa0576700:CDS
TTGTTCAAGAGGGGTAACCT+TGG 0.631918 4_1:+80766641 None:intergenic
GTTACAATGAGAGTGGAAAG+GGG 0.635051 4_1:-80766972 Msa0576700:three_prime_UTR
TGTGGGGTCCACACCAACCT+CGG 0.635154 4_1:+80769493 None:intergenic
AAGCGGAAGCGAGCTCCGGT+GGG 0.636737 4_1:+80769788 None:intergenic
AACAGACGAAGAACGTGTAA+CGG 0.639303 4_1:-80769869 Msa0576700:CDS
GGATGAGAATGTGGATTCGG+AGG 0.643753 4_1:+80768953 None:intergenic
GGTATGGGACATCATCCACA+TGG 0.649470 4_1:-80769064 Msa0576700:CDS
GGAAGTATATGAAGATTCCA+CGG 0.650423 4_1:-80767432 Msa0576700:three_prime_UTR
TCCTGTCACGTAAATGTAGG+CGG 0.654015 4_1:-80767335 Msa0576700:three_prime_UTR
TCAGGAGTACACGCACTACA+CGG 0.666051 4_1:+80767201 None:intergenic
GCATAGATCTTGTTCAAGAG+GGG 0.667682 4_1:+80766632 None:intergenic
CGTACAATACACCAAATGGT+GGG 0.668975 4_1:+80766753 None:intergenic
AAAGAGGAGTGAGATCGTGG+AGG 0.675435 4_1:+80769824 None:intergenic
ATTGACATCATACTCGAAGG+TGG 0.684359 4_1:+80769100 None:intergenic
GCCATTTGTAACCTGCTCTG+TGG 0.690054 4_1:-80767110 Msa0576700:three_prime_UTR
AGAGTGTGTTGCGAGAGGCG+CGG 0.693296 4_1:+80769722 None:intergenic
TAAGAGCTAGAACCACCCGA+AGG 0.715458 4_1:+80769016 None:intergenic
AGATTCGGCTGTTAGAACAA+CGG 0.719098 4_1:-80769530 Msa0576700:CDS
TCATCTTGGGATAAAGAACG+CGG 0.719383 4_1:-80769440 Msa0576700:intron
GTATGGGACATCATCCACAT+GGG 0.727717 4_1:-80769063 Msa0576700:CDS
CCGGTTTCATGCAAACTCTG+CGG 0.740073 4_1:+80769259 None:intergenic
TGTCCCATACCAATCATAGG+CGG 0.741457 4_1:+80769076 None:intergenic
ACGTCGAAGAGAGTACGGAG+AGG 0.748301 4_1:+80769748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATAGTAATAAATAAAA+GGG - chr4_1:80767436-80767455 Msa0576700:three_prime_UTR 10.0%
!!! TATTTGTACTTTTTTTTTTA+AGG - chr4_1:80769792-80769811 Msa0576700:CDS 10.0%
!!! CTTTTATTTATTACTATCAT+TGG + chr4_1:80767437-80767456 None:intergenic 15.0%
!! CAATGATAGTAATAAATAAA+AGG - chr4_1:80767435-80767454 Msa0576700:three_prime_UTR 15.0%
!! ATGATAGTAATAAATAAAAG+GGG - chr4_1:80767437-80767456 Msa0576700:three_prime_UTR 15.0%
!!! TTTACTTAAGATTGAATTTT+TGG - chr4_1:80767817-80767836 Msa0576700:intron 15.0%
!!! TTACTTAAGATTGAATTTTT+GGG - chr4_1:80767818-80767837 Msa0576700:intron 15.0%
!!! TTTGTTATAGAAATAACTTA+CGG + chr4_1:80768070-80768089 None:intergenic 15.0%
!!! AAGTTAAATTATTTTCATGT+AGG - chr4_1:80768100-80768119 Msa0576700:intron 15.0%
!! AAGTTTATTAAATTACTATG+TGG - chr4_1:80768368-80768387 Msa0576700:intron 15.0%
!! AGTTTATTAAATTACTATGT+GGG - chr4_1:80768369-80768388 Msa0576700:intron 15.0%
!! CAAAATTTAATGTAAATGAT+TGG - chr4_1:80768474-80768493 Msa0576700:intron 15.0%
!!! TTTGTTTATAGTGATTTTTT+AGG - chr4_1:80768594-80768613 Msa0576700:intron 15.0%
!!! TATTGATTGTATATTTAATG+AGG - chr4_1:80768787-80768806 Msa0576700:intron 15.0%
!! CAAATAAAATAATACTAATC+AGG + chr4_1:80769302-80769321 None:intergenic 15.0%
!! ATTTAATATGATGCATCATA+GGG - chr4_1:80767372-80767391 Msa0576700:three_prime_UTR 20.0%
!!! CTTATTCTTTTGAACATAAT+TGG - chr4_1:80767537-80767556 Msa0576700:intron 20.0%
!!! TTATTTTCTTAAGCTCTTAT+AGG - chr4_1:80767665-80767684 Msa0576700:intron 20.0%
!!! TTTGACTTTATTTTATCTGT+TGG - chr4_1:80767703-80767722 Msa0576700:intron 20.0%
!! ATAACCAGAAATTAAGTAAT+AGG + chr4_1:80767894-80767913 None:intergenic 20.0%
!!! TTTTTTAGTACATAACATTG+AGG - chr4_1:80767996-80768015 Msa0576700:intron 20.0%
!! TTGTTATAGAAATAACTTAC+GGG + chr4_1:80768069-80768088 None:intergenic 20.0%
!! AATTTAATGTAAATGATTGG+TGG - chr4_1:80768477-80768496 Msa0576700:intron 20.0%
!! ATTTAATGTAAATGATTGGT+GGG - chr4_1:80768478-80768497 Msa0576700:intron 20.0%
!!! TTTATAGTGATTTTTTAGGA+TGG - chr4_1:80768598-80768617 Msa0576700:intron 20.0%
!! TTGGAAAATACATATTTCAT+TGG - chr4_1:80768636-80768655 Msa0576700:intron 20.0%
!! AAACATTTGAATCTACAAAA+AGG + chr4_1:80768846-80768865 None:intergenic 20.0%
!! AACATTAAGATATACTAATC+AGG + chr4_1:80769279-80769298 None:intergenic 20.0%
!!! TAAGTTCCATTTTCTTATAT+TGG - chr4_1:80769327-80769346 Msa0576700:CDS 20.0%
!!! AAGTTCCATTTTCTTATATT+GGG - chr4_1:80769328-80769347 Msa0576700:CDS 20.0%
!!! GATTTATATTTTGTAAGTAG+AGG - chr4_1:80769403-80769422 Msa0576700:intron 20.0%
!! ATAAAACCTAGAATAATGAA+TGG + chr4_1:80769486-80769505 None:intergenic 20.0%
!!! TTGCTAATTTGTTTTTTTCT+TGG - chr4_1:80769756-80769775 Msa0576700:CDS 20.0%
!!! TAATTTGTTTTTTTCTTGGT+GGG - chr4_1:80769760-80769779 Msa0576700:CDS 20.0%
!!! TTTTATACTGATTTGCTAAT+TGG - chr4_1:80769879-80769898 Msa0576700:CDS 20.0%
! TTTATTTGAAGAGAATGCAA+GGG - chr4_1:80767017-80767036 Msa0576700:three_prime_UTR 25.0%
! TCAAATGCTAATCATTCAAA+TGG - chr4_1:80767142-80767161 Msa0576700:three_prime_UTR 25.0%
! CTATGATGCATCATATTAAA+TGG + chr4_1:80767373-80767392 None:intergenic 25.0%
! CATTTAATATGATGCATCAT+AGG - chr4_1:80767371-80767390 Msa0576700:three_prime_UTR 25.0%
! CATACCTATTACTTAATTTC+TGG - chr4_1:80767887-80767906 Msa0576700:intron 25.0%
! AAAAACAGAACAAAGAAACA+AGG + chr4_1:80767981-80768000 None:intergenic 25.0%
! ATAGGTCATAAATAATCATC+GGG + chr4_1:80768024-80768043 None:intergenic 25.0%
! CATAGGTCATAAATAATCAT+CGG + chr4_1:80768025-80768044 None:intergenic 25.0%
! TGTTATAGAAATAACTTACG+GGG + chr4_1:80768068-80768087 None:intergenic 25.0%
!!! AGCTATTTTGTATAGTTTGT+AGG - chr4_1:80768141-80768160 Msa0576700:intron 25.0%
!! TACAAACTGAAAACATCTTT+TGG - chr4_1:80768164-80768183 Msa0576700:intron 25.0%
!! ACAAACTGAAAACATCTTTT+GGG - chr4_1:80768165-80768184 Msa0576700:intron 25.0%
!!! TTTTTTAGTGCATTACATTG+AGG - chr4_1:80768428-80768447 Msa0576700:intron 25.0%
! AAATACAACTTTACCATATG+CGG + chr4_1:80768545-80768564 None:intergenic 25.0%
! ATGTGATACAATATCAGATT+TGG - chr4_1:80768569-80768588 Msa0576700:intron 25.0%
!!! GATACTTTTGTTTTGTTTGT+TGG - chr4_1:80768676-80768695 Msa0576700:intron 25.0%
! TAAGAATGCATTTCTTCATT+TGG - chr4_1:80768709-80768728 Msa0576700:intron 25.0%
! TATATTATATTACCATTGCC+CGG - chr4_1:80768735-80768754 Msa0576700:intron 25.0%
! AGATTCAAATGTTTGATTGT+TGG - chr4_1:80768852-80768871 Msa0576700:intron 25.0%
!! TCTTTTATTCAATGTAGCAA+TGG + chr4_1:80769202-80769221 None:intergenic 25.0%
! CTTGAACAAGATCTATAAAA+GGG - chr4_1:80769529-80769548 Msa0576700:CDS 25.0%
!!! CTAATTTGTTTTTTTCTTGG+TGG - chr4_1:80769759-80769778 Msa0576700:CDS 25.0%
! AAATCTTTTATGTAGCTGTG+GGG + chr4_1:80766879-80766898 None:intergenic 30.0%
! CAAATCTTTTATGTAGCTGT+GGG + chr4_1:80766880-80766899 None:intergenic 30.0%
! ACAAATCTTTTATGTAGCTG+TGG + chr4_1:80766881-80766900 None:intergenic 30.0%
ACAGCTACATAAAAGATTTG+TGG - chr4_1:80766880-80766899 Msa0576700:three_prime_UTR 30.0%
! ATCAACTGCATAATCGTTTT+CGG + chr4_1:80766941-80766960 None:intergenic 30.0%
! CTTTATTTGAAGAGAATGCA+AGG - chr4_1:80767016-80767035 Msa0576700:three_prime_UTR 30.0%
AAAAGATGATCAGAAGAAGA+AGG + chr4_1:80767058-80767077 None:intergenic 30.0%
AATGCTAATCATTCAAATGG+AGG - chr4_1:80767145-80767164 Msa0576700:three_prime_UTR 30.0%
ATGCTAATCATTCAAATGGA+GGG - chr4_1:80767146-80767165 Msa0576700:three_prime_UTR 30.0%
AAGAAACACCAACTATTCTT+TGG + chr4_1:80767520-80767539 None:intergenic 30.0%
!! GGTTTTATGTAAGTTTGCAA+TGG - chr4_1:80767839-80767858 Msa0576700:intron 30.0%
TATGTAAGTTTGCAATGGTT+TGG - chr4_1:80767844-80767863 Msa0576700:intron 30.0%
ATGTAAGTTTGCAATGGTTT+GGG - chr4_1:80767845-80767864 Msa0576700:intron 30.0%
TGAAAACTTGAAACAGAGTT+AGG - chr4_1:80767946-80767965 Msa0576700:intron 30.0%
! GAGCTAAATTTTCATCTCAT+AGG + chr4_1:80768042-80768061 None:intergenic 30.0%
TCTACAATCAAGTAATAGGT+GGG + chr4_1:80768294-80768313 None:intergenic 30.0%
CTAGTCTACAATCAAGTAAT+AGG + chr4_1:80768298-80768317 None:intergenic 30.0%
TTAAATTACTATGTGGGTAG+TGG - chr4_1:80768375-80768394 Msa0576700:intron 30.0%
TAAATTACTATGTGGGTAGT+GGG - chr4_1:80768376-80768395 Msa0576700:intron 30.0%
! AATTTGTTTGTGCAATGTAG+AGG + chr4_1:80768896-80768915 None:intergenic 30.0%
ATTGCACAAACAAATTCTTG+AGG - chr4_1:80768900-80768919 Msa0576700:intron 30.0%
TCACAGATTTACAAACTTCT+TGG - chr4_1:80768981-80769000 Msa0576700:CDS 30.0%
TTAGAATCAGCTATCTGTTT+AGG + chr4_1:80769078-80769097 None:intergenic 30.0%
ACACACCCAATATAAGAAAA+TGG + chr4_1:80769336-80769355 None:intergenic 30.0%
! TTTTCTTATATTGGGTGTGT+AGG - chr4_1:80769336-80769355 Msa0576700:CDS 30.0%
TAGAAATGTTACAATGAGAG+TGG - chr4_1:80769374-80769393 Msa0576700:CDS 30.0%
AAACAAGAATTCTCAAGGTT+GGG + chr4_1:80769454-80769473 None:intergenic 30.0%
AAAACAAGAATTCTCAAGGT+TGG + chr4_1:80769455-80769474 None:intergenic 30.0%
AGGTAAAACAAGAATTCTCA+AGG + chr4_1:80769459-80769478 None:intergenic 30.0%
GCTTGAACAAGATCTATAAA+AGG - chr4_1:80769528-80769547 Msa0576700:CDS 30.0%
GATTTGATGAGTGATTGTTC+CGG + chr4_1:80766675-80766694 None:intergenic 35.0%
GTTCGGATTCAAGAAAACAT+AGG - chr4_1:80766762-80766781 Msa0576700:three_prime_UTR 35.0%
AGATTCTGTTACAGAAGAAG+TGG - chr4_1:80766790-80766809 Msa0576700:three_prime_UTR 35.0%
!! ATGCAGTTGATGAATGTTGA+AGG - chr4_1:80766950-80766969 Msa0576700:three_prime_UTR 35.0%
ATGAGAATGATTAGCAGAAC+CGG + chr4_1:80767116-80767135 None:intergenic 35.0%
ATATGATGCATCATAGGGAT+TGG - chr4_1:80767377-80767396 Msa0576700:three_prime_UTR 35.0%
CTATCATTGGAAGACATATG+AGG + chr4_1:80767424-80767443 None:intergenic 35.0%
TTGTGCTTCCAAAGAATAGT+TGG - chr4_1:80767509-80767528 Msa0576700:intron 35.0%
ATATCTCAAGCGCTTATGTA+TGG - chr4_1:80767754-80767773 Msa0576700:intron 35.0%
TTATGTATGGTATAAGCGCT+TGG - chr4_1:80767767-80767786 Msa0576700:intron 35.0%
AAGTACTTGTGAGACAGTTT+GGG + chr4_1:80768219-80768238 None:intergenic 35.0%
GTCTACAATCAAGTAATAGG+TGG + chr4_1:80768295-80768314 None:intergenic 35.0%
! GGAAGTATATGAAGATTCCA+CGG - chr4_1:80768921-80768940 Msa0576700:intron 35.0%
! CAAATTGTAATTTAGCTCCG+TGG + chr4_1:80768941-80768960 None:intergenic 35.0%
AATTCCTGTCACGTAAATGT+AGG - chr4_1:80769015-80769034 Msa0576700:CDS 35.0%
AGAAGAAGGTTAACACTTTC+AGG + chr4_1:80769173-80769192 None:intergenic 35.0%
ATGTTACAATGAGAGTGGAA+AGG - chr4_1:80769379-80769398 Msa0576700:CDS 35.0%
TGTTACAATGAGAGTGGAAA+GGG - chr4_1:80769380-80769399 Msa0576700:CDS 35.0%
AACAAGAATTCTCAAGGTTG+GGG + chr4_1:80769453-80769472 None:intergenic 35.0%
CTAGAATAATGAATGGTCAC+AGG + chr4_1:80769479-80769498 None:intergenic 35.0%
CTGTGACCATTCATTATTCT+AGG - chr4_1:80769477-80769496 Msa0576700:CDS 35.0%
ATCCCTTGATCAAAAGAACT+AGG - chr4_1:80769504-80769523 Msa0576700:CDS 35.0%
!! CTCCTAGTTCTTTTGATCAA+GGG + chr4_1:80769509-80769528 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_1:80769629-80769648 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_1:80769628-80769647 Msa0576700:CDS 35.0%
TGCATAGATCTTGTTCAAGA+GGG + chr4_1:80769725-80769744 None:intergenic 35.0%
ACTTTATGAAGCCTTTCTTG+TGG - chr4_1:80769830-80769849 Msa0576700:CDS 35.0%
AACAGACGAAGAACGTGTAA+CGG - chr4_1:80766484-80766503 Msa0576700:three_prime_UTR 40.0%
AGATTCGGCTGTTAGAACAA+CGG - chr4_1:80766823-80766842 Msa0576700:three_prime_UTR 40.0%
GAACAACGGAGACGATAAAA+AGG - chr4_1:80766837-80766856 Msa0576700:three_prime_UTR 40.0%
TGGATGTTGTTGCTCATCTT+GGG - chr4_1:80766900-80766919 Msa0576700:three_prime_UTR 40.0%
TCATCTTGGGATAAAGAACG+CGG - chr4_1:80766913-80766932 Msa0576700:three_prime_UTR 40.0%
AATCATTCAAATGGAGGGCA+TGG - chr4_1:80767151-80767170 Msa0576700:three_prime_UTR 40.0%
ATTGACATCATACTCGAAGG+TGG + chr4_1:80767256-80767275 None:intergenic 40.0%
TGATGTCCCATACCAATCAT+AGG + chr4_1:80767283-80767302 None:intergenic 40.0%
TGAGGATGAGAATGTGGATT+CGG + chr4_1:80767406-80767425 None:intergenic 40.0%
GACATATGAGGATGAGAATG+TGG + chr4_1:80767412-80767431 None:intergenic 40.0%
! GGAAGCACAATGAAAAGTGA+TGG + chr4_1:80767499-80767518 None:intergenic 40.0%
CAAGTACTTGTGAGACAGTT+TGG + chr4_1:80768220-80768239 None:intergenic 40.0%
GTATGAGAGTGAGTTCTGTT+AGG + chr4_1:80768272-80768291 None:intergenic 40.0%
ACAGCACAATGAAATGGGTA+AGG + chr4_1:80768519-80768538 None:intergenic 40.0%
GGATGACAGCACAATGAAAT+GGG + chr4_1:80768524-80768543 None:intergenic 40.0%
! ATGGTCTTTGCTGTCTGATT+TGG - chr4_1:80768617-80768636 Msa0576700:intron 40.0%
!! ACTGAGAGTGTTGATCAATC+CGG + chr4_1:80768757-80768776 None:intergenic 40.0%
!! AGCAATGGTTCTGAAGAAGA+AGG + chr4_1:80769187-80769206 None:intergenic 40.0%
TATATTGGGTGTGTAGGACT+AGG - chr4_1:80769342-80769361 Msa0576700:CDS 40.0%
GTTACAATGAGAGTGGAAAG+GGG - chr4_1:80769381-80769400 Msa0576700:CDS 40.0%
!! GCTCCTAGTTCTTTTGATCA+AGG + chr4_1:80769510-80769529 None:intergenic 40.0%
AGATCTATAAAAGGGCAACC+TGG - chr4_1:80769537-80769556 Msa0576700:CDS 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_1:80769603-80769622 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr4_1:80769634-80769653 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr4_1:80769635-80769654 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr4_1:80769679-80769698 None:intergenic 40.0%
GCATAGATCTTGTTCAAGAG+GGG + chr4_1:80769724-80769743 None:intergenic 40.0%
CTGCATAGATCTTGTTCAAG+AGG + chr4_1:80769726-80769745 None:intergenic 40.0%
TGAAGCCTTTCTTGTGGATA+AGG - chr4_1:80769836-80769855 Msa0576700:CDS 40.0%
! ACAAGCCTTATCCACAAGAA+AGG + chr4_1:80769844-80769863 None:intergenic 40.0%
TGATTGTTCCGGAGTTGCTT+CGG + chr4_1:80766664-80766683 None:intergenic 45.0%
TTCAACGTCTTCTACTTCGC+TGG + chr4_1:80766711-80766730 None:intergenic 45.0%
AGTGGAAGCTGAAGCAGATT+CGG - chr4_1:80766808-80766827 Msa0576700:three_prime_UTR 45.0%
GTGGATGTTGTTGCTCATCT+TGG - chr4_1:80766899-80766918 Msa0576700:three_prime_UTR 45.0%
! TCAAATGGAGGGCATGGAAA+TGG - chr4_1:80767157-80767176 Msa0576700:three_prime_UTR 45.0%
!! GGCATTGACATCATACTCGA+AGG + chr4_1:80767259-80767278 None:intergenic 45.0%
ATGTCAATGCCGCCTATGAT+TGG - chr4_1:80767268-80767287 Msa0576700:three_prime_UTR 45.0%
AATGCCGCCTATGATTGGTA+TGG - chr4_1:80767273-80767292 Msa0576700:three_prime_UTR 45.0%
ATGCCGCCTATGATTGGTAT+GGG - chr4_1:80767274-80767293 Msa0576700:three_prime_UTR 45.0%
TGTCCCATACCAATCATAGG+CGG + chr4_1:80767280-80767299 None:intergenic 45.0%
GTATGGGACATCATCCACAT+GGG - chr4_1:80767290-80767309 Msa0576700:three_prime_UTR 45.0%
ACATCATCCACATGGGCATA+TGG - chr4_1:80767297-80767316 Msa0576700:three_prime_UTR 45.0%
CATCATCCACATGGGCATAT+GGG - chr4_1:80767298-80767317 Msa0576700:three_prime_UTR 45.0%
ATCATCCACATGGGCATATG+GGG - chr4_1:80767299-80767318 Msa0576700:three_prime_UTR 45.0%
TCTTCAGGTCAGCAATCACA+TGG - chr4_1:80767471-80767490 Msa0576700:three_prime_UTR 45.0%
CGGATGACAGCACAATGAAA+TGG + chr4_1:80768525-80768544 None:intergenic 45.0%
ATTGTGCTGTCATCCGCATA+TGG - chr4_1:80768529-80768548 Msa0576700:intron 45.0%
!! CTGAGAGTGTTGATCAATCC+GGG + chr4_1:80768756-80768775 None:intergenic 45.0%
TCCTGTCACGTAAATGTAGG+CGG - chr4_1:80769018-80769037 Msa0576700:CDS 45.0%
TAGGCGGTGATTGTGAGTTA+AGG - chr4_1:80769034-80769053 Msa0576700:CDS 45.0%
ACCACAGAGCAGGTTACAAA+TGG + chr4_1:80769247-80769266 None:intergenic 45.0%
GAACATTGATACCACAGAGC+AGG + chr4_1:80769257-80769276 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_1:80769604-80769623 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_1:80769607-80769626 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_1:80769639-80769658 Msa0576700:CDS 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr4_1:80769672-80769691 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr4_1:80769673-80769692 None:intergenic 45.0%
TTGTTCAAGAGGGGTAACCT+TGG + chr4_1:80769715-80769734 None:intergenic 45.0%
! ACGAAGAACGTGTAACGGAG+TGG - chr4_1:80766489-80766508 Msa0576700:three_prime_UTR 50.0%
! CGAAGAACGTGTAACGGAGT+GGG - chr4_1:80766490-80766509 Msa0576700:three_prime_UTR 50.0%
! ACGTGTAACGGAGTGGGAAA+AGG - chr4_1:80766496-80766515 Msa0576700:three_prime_UTR 50.0%
! CGTGTAACGGAGTGGGAAAA+GGG - chr4_1:80766497-80766516 Msa0576700:three_prime_UTR 50.0%
GAGTGAGATCGTGGAGGTTA+GGG + chr4_1:80766526-80766545 None:intergenic 50.0%
AAAGAGGAGTGAGATCGTGG+AGG + chr4_1:80766532-80766551 None:intergenic 50.0%
TGGAAAGAGGAGTGAGATCG+TGG + chr4_1:80766535-80766554 None:intergenic 50.0%
CGATCTCACTCCTCTTTCCA+TGG - chr4_1:80766535-80766554 Msa0576700:three_prime_UTR 50.0%
GGGATCAAAGCCATGGAAAG+AGG + chr4_1:80766548-80766567 None:intergenic 50.0%
!! TTCCATGGCTTTGATCCCAC+CGG - chr4_1:80766550-80766569 Msa0576700:three_prime_UTR 50.0%
GGTTGACGTCGAAGAGAGTA+CGG + chr4_1:80766613-80766632 None:intergenic 50.0%
! AAGAGAGAGTGTGTTGCGAG+AGG + chr4_1:80766639-80766658 None:intergenic 50.0%
TCTCTTCTCCGAAGCAACTC+CGG - chr4_1:80766653-80766672 Msa0576700:three_prime_UTR 50.0%
TCTTCTACTTCGCTGGACAC+GGG + chr4_1:80766704-80766723 None:intergenic 50.0%
GTCTTCTACTTCGCTGGACA+CGG + chr4_1:80766705-80766724 None:intergenic 50.0%
GACGATAAAAAGGCCGAGGT+TGG - chr4_1:80766847-80766866 Msa0576700:three_prime_UTR 50.0%
!! TAAAAAGGCCGAGGTTGGTG+TGG - chr4_1:80766852-80766871 Msa0576700:three_prime_UTR 50.0%
CCGGTTTCATGCAAACTCTG+CGG + chr4_1:80767097-80767116 None:intergenic 50.0%
CCGCAGAGTTTGCATGAAAC+CGG - chr4_1:80767094-80767113 Msa0576700:three_prime_UTR 50.0%
! ATCATACTCGAAGGTGGTGG+TGG + chr4_1:80767250-80767269 None:intergenic 50.0%
GACATCATACTCGAAGGTGG+TGG + chr4_1:80767253-80767272 None:intergenic 50.0%
GGTATGGGACATCATCCACA+TGG - chr4_1:80767289-80767308 Msa0576700:three_prime_UTR 50.0%
GATGAGTTTGCCTCCTCCTT+CGG - chr4_1:80767321-80767340 Msa0576700:three_prime_UTR 50.0%
ATGAGTTTGCCTCCTCCTTC+GGG - chr4_1:80767322-80767341 Msa0576700:three_prime_UTR 50.0%
TAAGAGCTAGAACCACCCGA+AGG + chr4_1:80767340-80767359 None:intergenic 50.0%
GGATGAGAATGTGGATTCGG+AGG + chr4_1:80767403-80767422 None:intergenic 50.0%
! GTGTTGATCAATCCGGGCAA+TGG + chr4_1:80768750-80768769 None:intergenic 50.0%
ACCGCCTACATTTACGTGAC+AGG + chr4_1:80769022-80769041 None:intergenic 50.0%
! TCAGGAGTACACGCACTACA+CGG + chr4_1:80769155-80769174 None:intergenic 50.0%
GCCATTTGTAACCTGCTCTG+TGG - chr4_1:80769243-80769262 Msa0576700:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4_1:80769695-80769714 Msa0576700:CDS 50.0%
GGAGTGAGATCGTGGAGGTT+AGG + chr4_1:80766527-80766546 None:intergenic 55.0%
TTCCGCTTTCAGCATCTCCC+CGG - chr4_1:80766580-80766599 Msa0576700:three_prime_UTR 55.0%
! AAGAGAGTACGGAGAGGCTC+CGG + chr4_1:80766602-80766621 None:intergenic 55.0%
! ACGTCGAAGAGAGTACGGAG+AGG + chr4_1:80766608-80766627 None:intergenic 55.0%
GAACCTGATCCATCTCGCTC+GGG + chr4_1:80766746-80766765 None:intergenic 55.0%
CGAACCTGATCCATCTCGCT+CGG + chr4_1:80766747-80766766 None:intergenic 55.0%
CGAGCGAGATGGATCAGGTT+CGG - chr4_1:80766745-80766764 Msa0576700:three_prime_UTR 55.0%
CGGAGACGATAAAAAGGCCG+AGG - chr4_1:80766843-80766862 Msa0576700:three_prime_UTR 55.0%
TCATGCAAACTCTGCGGCAC+AGG + chr4_1:80767091-80767110 None:intergenic 55.0%
! GGAGGGCATGGAAATGGACA+TGG - chr4_1:80767163-80767182 Msa0576700:three_prime_UTR 55.0%
!! GGTGGTGGTGGATAAGGCAT+AGG + chr4_1:80767238-80767257 None:intergenic 55.0%
!! CTCGAAGGTGGTGGTGGATA+AGG + chr4_1:80767244-80767263 None:intergenic 55.0%
CTCATCCCCATATGCCCATG+TGG + chr4_1:80767307-80767326 None:intergenic 55.0%
GGGGTTCTGCTCGTTTCTTC+AGG - chr4_1:80767456-80767475 Msa0576700:three_prime_UTR 55.0%
ACTGAAGCTCCTGCATACGC+AGG - chr4_1:80769563-80769582 Msa0576700:CDS 55.0%
CTGAAGCTCCTGCATACGCA+GGG - chr4_1:80769564-80769583 Msa0576700:CDS 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_1:80769660-80769679 None:intergenic 55.0%
CTCCGGTGGGATCAAAGCCA+TGG + chr4_1:80766555-80766574 None:intergenic 60.0%
CTGAAAGCGGAAGCGAGCTC+CGG + chr4_1:80766572-80766591 None:intergenic 60.0%
CTCCGGGGAGATGCTGAAAG+CGG + chr4_1:80766585-80766604 None:intergenic 60.0%
! AGAGAGTACGGAGAGGCTCC+GGG + chr4_1:80766601-80766620 None:intergenic 60.0%
AGAGTGTGTTGCGAGAGGCG+CGG + chr4_1:80766634-80766653 None:intergenic 60.0%
GACGAAGAACCCGAGCGAGA+TGG - chr4_1:80766734-80766753 Msa0576700:three_prime_UTR 60.0%
GAACCCGAGCGAGATGGATC+AGG - chr4_1:80766740-80766759 Msa0576700:three_prime_UTR 60.0%
TGTGGGGTCCACACCAACCT+CGG + chr4_1:80766863-80766882 None:intergenic 60.0%
AGTTTGCCTCCTCCTTCGGG+TGG - chr4_1:80767325-80767344 Msa0576700:three_prime_UTR 60.0%
CTAGAACCACCCGAAGGAGG+AGG + chr4_1:80767334-80767353 None:intergenic 60.0%
GAGCTAGAACCACCCGAAGG+AGG + chr4_1:80767337-80767356 None:intergenic 60.0%
TGCAGGAGCTTCAGTGCACC+AGG + chr4_1:80769558-80769577 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_1:80769591-80769610 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr4_1:80769706-80769725 None:intergenic 60.0%
AAGCGGAAGCGAGCTCCGGT+GGG + chr4_1:80766568-80766587 None:intergenic 65.0%
AAAGCGGAAGCGAGCTCCGG+TGG + chr4_1:80766569-80766588 None:intergenic 65.0%
! GAGAGTACGGAGAGGCTCCG+GGG + chr4_1:80766600-80766619 None:intergenic 65.0%
GCTCCTGCATACGCAGGGTC+CGG - chr4_1:80769569-80769588 Msa0576700:CDS 65.0%
CTCCTGCATACGCAGGGTCC+GGG - chr4_1:80769570-80769589 Msa0576700:CDS 65.0%
TTCCCGGACCCTGCGTATGC+AGG + chr4_1:80769575-80769594 None:intergenic 65.0%
TGCATACGCAGGGTCCGGGA+AGG - chr4_1:80769574-80769593 Msa0576700:CDS 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr4_1:80769575-80769594 Msa0576700:CDS 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr4_1:80769576-80769595 Msa0576700:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_1:80769589-80769608 Msa0576700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80766467 80769908 80766467 ID=Msa0576700;Name=Msa0576700
chr4_1 mRNA 80766467 80769908 80766467 ID=Msa0576700-mRNA-1;Parent=Msa0576700;Name=Msa0576700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|1|0|0|4|1041|320
chr4_1 exon 80766467 80767521 80766467 ID=Msa0576700-mRNA-1:exon:28963;Parent=Msa0576700-mRNA-1
chr4_1 exon 80768933 80769419 80768933 ID=Msa0576700-mRNA-1:exon:28962;Parent=Msa0576700-mRNA-1
chr4_1 exon 80769441 80769663 80769441 ID=Msa0576700-mRNA-1:exon:28961;Parent=Msa0576700-mRNA-1
chr4_1 exon 80769670 80769908 80769670 ID=Msa0576700-mRNA-1:exon:28960;Parent=Msa0576700-mRNA-1
chr4_1 CDS 80769670 80769908 80769670 ID=Msa0576700-mRNA-1:cds;Parent=Msa0576700-mRNA-1
chr4_1 CDS 80769441 80769663 80769441 ID=Msa0576700-mRNA-1:cds;Parent=Msa0576700-mRNA-1
chr4_1 CDS 80768933 80769419 80768933 ID=Msa0576700-mRNA-1:cds;Parent=Msa0576700-mRNA-1
chr4_1 CDS 80767508 80767521 80767508 ID=Msa0576700-mRNA-1:cds;Parent=Msa0576700-mRNA-1
chr4_1 three_prime_UTR 80766467 80767507 80766467 ID=Msa0576700-mRNA-1:three_prime_utr;Parent=Msa0576700-mRNA-1
Gene Sequence

>Msa0576700

ATGGGTGAAGAGGTTCGAACAGACGAAGAACGTGTAACGGAGTGGGAAAAGGGTCTCCCTAACCTCCACGATCTCACTCCTCTTTCCATGGCTTTGATCCCACCGGAGCTCGCTTCCGCTTTCAGCATCTCCCCGGAGCCTCTCCGTACTCTCTTCGACGTCAACCGCGCCTCTCGCAACACACTCTCTCTTCTCCGAAGCAACTCCGGAACAATCACTCATCAAATCAATCAACCCGTCGAAGTAGAAGACGTTGAAGAAGACGAAGAACCCGAGCGAGATGGATCAGGTTCGGATTCAAGAAAACATAGGAAAATAGATTCTGTTACAGAAGAAGTGGAAGCTGAAGCAGATTCGGCTGTTAGAACAACGGAGACGATAAAAAGGCCGAGGTTGGTGTGGACCCCACAGCTACATAAAAGATTTGTGGATGTTGTTGCTCATCTTGGGATAAAGAACGCGTTGATGAATGTTGAAGGATTAACAAGAGAAAATGTTGCTAGTCATTTGCAGAAATATCGTCTTTATTTGAAGAGAATGCAAGGGCTGTCAAATGATGCACCTTCTTCTTCTGATCATCTTTTTGCTTCTACACCTGTGCCGCAGAGTTTGCATGAAACCGGTTCTGCTAATCATTCTCATTCACATTCAAATGCTAATCATTCAAATGGAGGGCATGGAAATGGACATGGAAATTTGCATTCTCATTCACATTCACATTCGCATCATTCTGTGACGATTCCTATGCCTTATCCACCACCACCTTCGAGTATGATGTCAATGCCGCCTATGATTGGTATGGGACATCATCCACATGGGCATATGGGGATGAGTTTGCCTCCTCCTTCGGGTGGTTCTAGCTCTTATCGCTCGCATCCATTTAATATGATGCATCATAGGGATTGGCCTCCGAATCCACATTCTCATCCTCATATGTCTTCCAATGATAATTCAAATGTTTGA
Protein sequence

>Msa0576700

MGEEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPLRTLFDVNRASRNTLSLLRSNSGTITHQINQPVEVEDVEEDEEPERDGSGSDSRKHRKIDSVTEEVEAEADSAVRTTETIKRPRLVWTPQLHKRFVDVVAHLGIKNALMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHETGSANHSHSHSNANHSNGGHGNGHGNLHSHSHSHSHHSVTIPMPYPPPPSSMMSMPPMIGMGHHPHGHMGMSLPPPSGGSSSYRSHPFNMMHHRDWPPNPHSHPHMSSNDNSNV*