Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576810 | KEH20952.1 | 89.461 | 408 | 19 | 3 | 1 | 392 | 1 | 400 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576810 | sp|B2V855|GATA_SULSY | 37.131 | 237 | 125 | 4 | 172 | 387 | 10 | 243 | 4.10e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576810 | A0A072TU58 | 89.461 | 408 | 19 | 3 | 1 | 392 | 1 | 400 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0576810 | Msa0577020 | 0.873098 | 1.912689e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576810 | MtrunA17_Chr8g0385461 | 89.461 | 408 | 19 | 3 | 1 | 392 | 1 | 400 | 0.0 | 732 |
| Msa0576810 | MtrunA17_Chr2g0321571 | 94.937 | 79 | 4 | 0 | 411 | 489 | 29 | 107 | 2.07e-41 | 143 |
| Msa0576810 | MtrunA17_Chr4g0035271 | 93.671 | 79 | 5 | 0 | 411 | 489 | 29 | 107 | 6.57e-41 | 142 |
| Msa0576810 | MtrunA17_Chr8g0377691 | 33.058 | 242 | 134 | 7 | 169 | 384 | 40 | 279 | 2.97e-28 | 117 |
| Msa0576810 | MtrunA17_Chr8g0377701 | 31.013 | 316 | 178 | 10 | 169 | 454 | 41 | 346 | 6.32e-28 | 116 |
| Msa0576810 | MtrunA17_Chr8g0377681 | 30.924 | 249 | 146 | 5 | 161 | 384 | 29 | 276 | 1.72e-25 | 109 |
| Msa0576810 | MtrunA17_Chr4g0037521 | 33.193 | 238 | 132 | 6 | 169 | 381 | 34 | 269 | 4.08e-25 | 108 |
| Msa0576810 | MtrunA17_Chr8g0377651 | 30.924 | 249 | 146 | 5 | 161 | 384 | 32 | 279 | 4.32e-25 | 108 |
| Msa0576810 | MtrunA17_Chr8g0377641 | 28.889 | 315 | 186 | 8 | 169 | 454 | 37 | 342 | 2.06e-24 | 106 |
| Msa0576810 | MtrunA17_Chr3g0097801 | 30.638 | 235 | 142 | 5 | 170 | 384 | 43 | 276 | 1.32e-17 | 85.5 |
| Msa0576810 | MtrunA17_Chr1g0191741 | 30.065 | 153 | 84 | 3 | 232 | 362 | 25 | 176 | 2.00e-16 | 81.3 |
| Msa0576810 | MtrunA17_Chr3g0130801 | 27.206 | 272 | 170 | 8 | 153 | 399 | 184 | 452 | 4.27e-15 | 78.2 |
| Msa0576810 | MtrunA17_Chr6g0455051 | 75.000 | 44 | 2 | 1 | 408 | 451 | 6 | 40 | 2.03e-14 | 67.8 |
| Msa0576810 | MtrunA17_Chr4g0037491 | 44.444 | 72 | 40 | 0 | 310 | 381 | 1 | 72 | 2.45e-13 | 70.9 |
| Msa0576810 | MtrunA17_Chr4g0050371 | 30.667 | 150 | 83 | 3 | 234 | 362 | 73 | 222 | 5.36e-13 | 71.2 |
| Msa0576810 | MtrunA17_Chr8g0384851 | 27.622 | 286 | 174 | 9 | 154 | 409 | 119 | 401 | 1.14e-12 | 70.5 |
| Msa0576810 | MtrunA17_Chr2g0279961 | 26.455 | 189 | 114 | 4 | 215 | 381 | 178 | 363 | 1.06e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576810 | AT5G07360.1 | 67.847 | 339 | 92 | 2 | 70 | 392 | 105 | 442 | 8.39e-164 | 479 |
| Msa0576810 | AT5G07360.3 | 67.847 | 339 | 92 | 2 | 70 | 392 | 105 | 442 | 8.39e-164 | 479 |
| Msa0576810 | AT5G07360.2 | 65.782 | 339 | 92 | 3 | 70 | 392 | 105 | 435 | 2.01e-155 | 457 |
| Msa0576810 | AT2G21580.2 | 87.179 | 78 | 10 | 0 | 412 | 489 | 30 | 107 | 6.83e-39 | 137 |
| Msa0576810 | AT2G21580.1 | 87.342 | 79 | 10 | 0 | 411 | 489 | 30 | 108 | 9.82e-39 | 137 |
| Msa0576810 | AT4G39200.2 | 83.333 | 78 | 13 | 0 | 412 | 489 | 30 | 107 | 2.64e-37 | 133 |
| Msa0576810 | AT4G39200.1 | 83.544 | 79 | 13 | 0 | 411 | 489 | 30 | 108 | 3.83e-37 | 132 |
| Msa0576810 | AT4G34555.1 | 83.333 | 78 | 13 | 0 | 411 | 488 | 30 | 107 | 1.67e-35 | 128 |
| Msa0576810 | AT2G16360.1 | 79.221 | 77 | 16 | 0 | 411 | 487 | 30 | 106 | 1.88e-32 | 120 |
| Msa0576810 | AT4G34880.2 | 34.483 | 232 | 125 | 6 | 180 | 385 | 55 | 285 | 5.77e-23 | 102 |
| Msa0576810 | AT3G25660.1 | 28.685 | 251 | 146 | 6 | 181 | 407 | 57 | 298 | 7.07e-18 | 87.0 |
| Msa0576810 | AT5G64440.1 | 30.159 | 189 | 107 | 4 | 215 | 381 | 179 | 364 | 1.40e-14 | 76.6 |
| Msa0576810 | AT1G08980.1 | 29.508 | 183 | 102 | 5 | 234 | 391 | 28 | 208 | 3.85e-14 | 74.7 |
| Msa0576810 | AT5G09420.1 | 31.056 | 161 | 87 | 5 | 234 | 373 | 71 | 228 | 6.06e-12 | 68.6 |
Find 116 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGCAAAGCTTGTTTC+TGG | 0.145581 | 4_1:+80893618 | Msa0576810:CDS |
| CCTCTTCATGGGATTCCTTA+TGG | 0.207420 | 4_1:+80893389 | Msa0576810:CDS |
| TCTGATCGTCTCATGATTAA+TGG | 0.218175 | 4_1:+80895812 | Msa0576810:CDS |
| GCAATATCTTCTTCAGATTC+TGG | 0.244608 | 4_1:-80892687 | None:intergenic |
| CTCAATATTCCATGGGTTCC+TGG | 0.249322 | 4_1:-80893679 | None:intergenic |
| TCTCATGATTAATGGATCTT+TGG | 0.298410 | 4_1:+80895820 | Msa0576810:CDS |
| GTTCATATATCCTTCTATTT+CGG | 0.304318 | 4_1:+80892653 | Msa0576810:CDS |
| AAGAAATGAAGAAGAAGAAA+TGG | 0.312376 | 4_1:+80895675 | Msa0576810:CDS |
| ACTGCATTGCGTCCAACTTT+TGG | 0.315166 | 4_1:+80893999 | Msa0576810:CDS |
| TTTAACCAGGTTCTTGAGTT+AGG | 0.324762 | 4_1:+80892831 | Msa0576810:intron |
| AGAAGGATATATGAACCTTT+TGG | 0.336084 | 4_1:-80892646 | None:intergenic |
| TGTTGTTCTGGATATTGTTC+GGG | 0.341121 | 4_1:+80894199 | Msa0576810:CDS |
| AGAAGCTACAAGTTCTCTAT+TGG | 0.343289 | 4_1:-80892547 | None:intergenic |
| GTTACTACAGCTTCAAGAAT+AGG | 0.347909 | 4_1:-80893041 | None:intergenic |
| GGTTCAGAAACTGCATTTAC+AGG | 0.349917 | 4_1:-80891433 | None:intergenic |
| TTCATTGAAGGGCCTCTTCA+TGG | 0.352867 | 4_1:+80893377 | Msa0576810:intron |
| AGATTTGATGGCAAGATGTT+TGG | 0.369874 | 4_1:+80895859 | Msa0576810:CDS |
| ACTTGATGCCAACTTCTTCA+AGG | 0.382626 | 4_1:+80892393 | Msa0576810:CDS |
| GGAGTGATGAGTTTGTATTT+AGG | 0.383952 | 4_1:-80895779 | None:intergenic |
| TTCAGAATTGAACCTGCGTC+TGG | 0.386105 | 4_1:-80891356 | None:intergenic |
| AAAGCTTGTTTCTGGATCAT+TGG | 0.387846 | 4_1:+80893626 | Msa0576810:CDS |
| GTAAACCTAAGGAACATCTT+AGG | 0.389631 | 4_1:-80892372 | None:intergenic |
| CTGTTGTTCTGGATATTGTT+CGG | 0.392117 | 4_1:+80894198 | Msa0576810:CDS |
| GCTTATGATGATGTCTGGTT+TGG | 0.393636 | 4_1:+80893648 | Msa0576810:CDS |
| AACTGATTGTGCTGTTGTTC+TGG | 0.393696 | 4_1:+80894187 | Msa0576810:CDS |
| TTTGGTACTGTTGGTCGAAC+TGG | 0.394321 | 4_1:+80894017 | Msa0576810:CDS |
| CATTGGCTTATGATGATGTC+TGG | 0.399917 | 4_1:+80893643 | Msa0576810:CDS |
| GTTCTTCAACATGCTTTCTT+CGG | 0.400483 | 4_1:-80891401 | None:intergenic |
| GGCAAGATGTTTGGTTAGGT+TGG | 0.403635 | 4_1:+80895868 | Msa0576810:CDS |
| TTCAACAGGTTGAAATCTGC+AGG | 0.407055 | 4_1:+80893588 | Msa0576810:intron |
| TCGTGCAATCAAAGATTTGA+TGG | 0.412528 | 4_1:+80895847 | Msa0576810:CDS |
| TATGATGATGTCTGGTTTGG+AGG | 0.417149 | 4_1:+80893651 | Msa0576810:CDS |
| CTCCGTATCTCCGAAATAGA+AGG | 0.418422 | 4_1:-80892663 | None:intergenic |
| CCCTGCCTAAGATGTTCCTT+AGG | 0.419921 | 4_1:+80892367 | Msa0576810:CDS |
| TGGGATTCCTTATGGATTGA+AGG | 0.421366 | 4_1:+80893397 | Msa0576810:CDS |
| CAAAACCGCCTATGTATTAG+TGG | 0.423357 | 4_1:-80895927 | None:intergenic |
| TCATCAAAGCCAGCGAAATC+AGG | 0.424698 | 4_1:+80895633 | Msa0576810:intron |
| CCTGCTGAGGTACTTGCTGC+AGG | 0.447687 | 4_1:-80893729 | None:intergenic |
| CTGATCATCCTTGAAGAAGT+TGG | 0.448974 | 4_1:-80892401 | None:intergenic |
| CAACTTCTTCAAGGATGATC+AGG | 0.452601 | 4_1:+80892402 | Msa0576810:CDS |
| GTAACACCGCATCGAGCTGC+AGG | 0.456235 | 4_1:-80893978 | None:intergenic |
| ATCCTTCTATTTCGGAGATA+CGG | 0.461533 | 4_1:+80892661 | Msa0576810:CDS |
| GAACTTGTAGCTTCTAAGAA+TGG | 0.462031 | 4_1:+80892555 | Msa0576810:CDS |
| TGATGGCAAGATGTTTGGTT+AGG | 0.463827 | 4_1:+80895864 | Msa0576810:CDS |
| AGTAACTTATACAGAAGAAC+TGG | 0.464189 | 4_1:+80893058 | Msa0576810:CDS |
| TCATTGAAGGGCCTCTTCAT+GGG | 0.464627 | 4_1:+80893378 | Msa0576810:intron |
| GAAAATTCCTCAATATTCCA+TGG | 0.474256 | 4_1:-80893687 | None:intergenic |
| ACCTAAGGAACATCTTAGGC+AGG | 0.478047 | 4_1:-80892368 | None:intergenic |
| TCTGGTTTGGAGGCAGAACC+AGG | 0.481401 | 4_1:+80893661 | Msa0576810:CDS |
| CAGTTCACTGCGCAACCAAA+AGG | 0.481855 | 4_1:+80892631 | Msa0576810:CDS |
| GTTTCTGAACCTATCGCAAA+TGG | 0.486252 | 4_1:-80893936 | None:intergenic |
| TGAGGAAGGATATGCGAGAA+GGG | 0.489622 | 4_1:-80891533 | None:intergenic |
| TCGAGCTGCAGGGTAAGTTA+TGG | 0.491305 | 4_1:-80893967 | None:intergenic |
| CCGACACGTGGCAGAGGTGG+TGG | 0.497482 | 4_1:+80891454 | Msa0576810:CDS |
| ATTATGTCCTTCAATCCATA+AGG | 0.498873 | 4_1:-80893404 | None:intergenic |
| CAAAGGTAAACAAAAGGAAA+AGG | 0.503611 | 4_1:+80895700 | Msa0576810:CDS |
| TTCAGTGAGAAGCTTATCAT+AGG | 0.513766 | 4_1:-80895753 | None:intergenic |
| AACTAAACAAATTACTTCGC+AGG | 0.517999 | 4_1:+80892866 | Msa0576810:CDS |
| ATGGAGCAAAGGTAAACAAA+AGG | 0.525529 | 4_1:+80895694 | Msa0576810:CDS |
| GTGAGGAAGGATATGCGAGA+AGG | 0.530767 | 4_1:-80891534 | None:intergenic |
| CACTAGAGCCACTAATACAT+AGG | 0.531061 | 4_1:+80895919 | Msa0576810:CDS |
| TTAGATTGACGAGATTGCTA+AGG | 0.531406 | 4_1:+80892491 | Msa0576810:intron |
| TAACCTTTATAGGATAAGCT+TGG | 0.532243 | 4_1:+80894146 | Msa0576810:intron |
| GCGATAGGTTCAGAAACAGC+TGG | 0.533367 | 4_1:+80893942 | Msa0576810:CDS |
| AATGAGCATATCAGAAAGCT+TGG | 0.537743 | 4_1:+80894043 | Msa0576810:CDS |
| AACAACATAGATAGACTCCT+TGG | 0.539798 | 4_1:-80893118 | None:intergenic |
| GAAGAACAAAGTGGTGAGGA+AGG | 0.544988 | 4_1:-80891547 | None:intergenic |
| CAATCCGCACTGAAAACTAA+AGG | 0.546483 | 4_1:-80892597 | None:intergenic |
| CTGCTGAGGTACTTGCTGCA+GGG | 0.553691 | 4_1:-80893728 | None:intergenic |
| CCTGCAGCAAGTACCTCAGC+AGG | 0.559110 | 4_1:+80893729 | Msa0576810:CDS |
| GCACTGAAAACTAAAGGTGA+TGG | 0.561148 | 4_1:-80892591 | None:intergenic |
| GTTGGCATCAAGTAAACCTA+AGG | 0.563829 | 4_1:-80892383 | None:intergenic |
| CGACCAACAGTACCAAAAGT+TGG | 0.564707 | 4_1:-80894011 | None:intergenic |
| TCAGTTGCGGATCTACAGAA+AGG | 0.566963 | 4_1:-80894170 | None:intergenic |
| AAAATTCCTCAATATTCCAT+GGG | 0.567370 | 4_1:-80893686 | None:intergenic |
| GGAATGGTTCCATTTGCGAT+AGG | 0.568596 | 4_1:+80893927 | Msa0576810:intron |
| AGACGATCAGAGAGGACTGA+AGG | 0.572796 | 4_1:-80895800 | None:intergenic |
| TAGATTGACGAGATTGCTAA+GGG | 0.573146 | 4_1:+80892492 | Msa0576810:intron |
| AAGAAGAAGAAATGGAGCAA+AGG | 0.573427 | 4_1:+80895683 | Msa0576810:CDS |
| GAGGCAGAACCAGGAACCCA+TGG | 0.574434 | 4_1:+80893670 | Msa0576810:CDS |
| CAGGAACCCATGGAATATTG+AGG | 0.577153 | 4_1:+80893680 | Msa0576810:CDS |
| ACAAGTAGAATTACCATGAT+CGG | 0.577662 | 4_1:-80891583 | None:intergenic |
| CAGTTGCGGATCTACAGAAA+GGG | 0.578399 | 4_1:-80894169 | None:intergenic |
| TCTGAACCGACACGTGGCAG+AGG | 0.581655 | 4_1:+80891448 | Msa0576810:CDS |
| GTAGAATTACCATGATCGGT+TGG | 0.583196 | 4_1:-80891579 | None:intergenic |
| TCAGAATTGAACCTGCGTCT+GGG | 0.587121 | 4_1:-80891355 | None:intergenic |
| AGCTTACACAAATATTCTTG+CGG | 0.595183 | 4_1:+80892889 | Msa0576810:CDS |
| GAACCGACACGTGGCAGAGG+TGG | 0.595634 | 4_1:+80891451 | Msa0576810:CDS |
| TTGTAGCTTCTAAGAATGGA+GGG | 0.601229 | 4_1:+80892559 | Msa0576810:CDS |
| CTTGTAGCTTCTAAGAATGG+AGG | 0.602574 | 4_1:+80892558 | Msa0576810:CDS |
| GCTGATGAATTGCTTAGCCA+AGG | 0.603099 | 4_1:+80893101 | Msa0576810:CDS |
| CCTAAGGAACATCTTAGGCA+GGG | 0.603224 | 4_1:-80892367 | None:intergenic |
| TGCCAGAATACAAAACAACA+TGG | 0.604012 | 4_1:+80893432 | Msa0576810:CDS |
| ACTTGCTGCAGGGCCAGCAG+AGG | 0.610001 | 4_1:-80893718 | None:intergenic |
| GCCAGAATACAAAACAACAT+GGG | 0.614131 | 4_1:+80893433 | Msa0576810:CDS |
| AAGCCAGCGAAATCAGGAGG+AGG | 0.614520 | 4_1:+80895639 | Msa0576810:intron |
| TCAACAGGTTGAAATCTGCA+GGG | 0.616666 | 4_1:+80893589 | Msa0576810:intron |
| GTTGGAAGAACAAAGTGGTG+AGG | 0.621389 | 4_1:-80891551 | None:intergenic |
| CCACCACCTCTGCCACGTGT+CGG | 0.626864 | 4_1:-80891454 | None:intergenic |
| AAGAAAGAACTCCCAGACGC+AGG | 0.628951 | 4_1:+80891344 | Msa0576810:five_prime_UTR |
| CCATAAGGAATCCCATGAAG+AGG | 0.635203 | 4_1:-80893389 | None:intergenic |
| GAGGAAGGATATGCGAGAAG+GGG | 0.635335 | 4_1:-80891532 | None:intergenic |
| CCAGGAACGGGTCATCAATG+AGG | 0.635918 | 4_1:-80894256 | None:intergenic |
| AACAACAGCACAATCAGTTG+CGG | 0.636172 | 4_1:-80894183 | None:intergenic |
| TCAAAGCCAGCGAAATCAGG+AGG | 0.651467 | 4_1:+80895636 | Msa0576810:intron |
| AACTCTGAACTTAACGAGAG+CGG | 0.655935 | 4_1:+80891377 | Msa0576810:five_prime_UTR |
| AAAGGAAAAGGTTAACAACA+TGG | 0.658168 | 4_1:+80895712 | Msa0576810:CDS |
| ACTTACCCTGCAGCTCGATG+CGG | 0.661226 | 4_1:+80893972 | Msa0576810:CDS |
| CAACAGGTTGAAATCTGCAG+GGG | 0.661659 | 4_1:+80893590 | Msa0576810:intron |
| CCAGAATACAAAACAACATG+GGG | 0.665616 | 4_1:+80893434 | Msa0576810:CDS |
| ATATGCGAGAAGGGGAACAA+CGG | 0.666354 | 4_1:-80891524 | None:intergenic |
| TAACACCGCATCGAGCTGCA+GGG | 0.681888 | 4_1:-80893977 | None:intergenic |
| TAATTGAAGAGTACCTGCTG+AGG | 0.688194 | 4_1:-80893742 | None:intergenic |
| GCAGTTTCTGAACCGACACG+TGG | 0.699421 | 4_1:+80891442 | Msa0576810:CDS |
| GTTGTTCTGGATATTGTTCG+GGG | 0.705893 | 4_1:+80894200 | Msa0576810:CDS |
| TAATCATGAGACGATCAGAG+AGG | 0.728408 | 4_1:-80895808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAACATTTTTTTTTTTA+AGG | + | chr4_1:80891244-80891263 | Msa0576810:intron | 10.0% |
| !! | ACAATTAATTCATTAATTTA+TGG | - | chr4_1:80891650-80891669 | None:intergenic | 10.0% |
| !!! | TACAATTAAAATCAATTTTT+CGG | - | chr4_1:80892748-80892767 | None:intergenic | 10.0% |
| !!! | TTTTAAGATAATATATATGT+TGG | + | chr4_1:80894487-80894506 | Msa0576810:intron | 10.0% |
| !!! | TTTAAGATAATATATATGTT+GGG | + | chr4_1:80894488-80894507 | Msa0576810:intron | 10.0% |
| !! | ATAAAATAATTTAGCTAATT+AGG | + | chr4_1:80894779-80894798 | Msa0576810:intron | 10.0% |
| !!! | TATTTTTTTTAATAGAGGAA+AGG | - | chr4_1:80891858-80891877 | None:intergenic | 15.0% |
| !! | AGAGTAAATATTTCAAAAAT+TGG | - | chr4_1:80892951-80892970 | None:intergenic | 15.0% |
| !! | CATTAAAAAAAGTTAAGTAT+TGG | - | chr4_1:80894645-80894664 | None:intergenic | 15.0% |
| !!! | GCTGATATTTTTTTTAATAG+AGG | - | chr4_1:80891863-80891882 | None:intergenic | 20.0% |
| !!! | ATGTTTATGTCATCTTTTAT+CGG | - | chr4_1:80892075-80892094 | None:intergenic | 20.0% |
| !!! | GATGTAATTATTTTATCATG+AGG | + | chr4_1:80892771-80892790 | Msa0576810:intron | 20.0% |
| !! | ATACAAGATGAATAGAAATT+AGG | + | chr4_1:80893183-80893202 | Msa0576810:intron | 20.0% |
| !!! | TCTTTTAAATAGTACTTTTG+CGG | + | chr4_1:80893243-80893262 | Msa0576810:intron | 20.0% |
| !!! | TAAATTTTGGTTTTCATTGA+AGG | + | chr4_1:80893365-80893384 | Msa0576810:intron | 20.0% |
| !!! | AAATTTTGGTTTTCATTGAA+GGG | + | chr4_1:80893366-80893385 | Msa0576810:intron | 20.0% |
| !! | TAAAAATCAAGTTATTGACA+TGG | + | chr4_1:80893469-80893488 | Msa0576810:intron | 20.0% |
| !! | AAATAAACCATATAACAGAA+AGG | - | chr4_1:80893811-80893830 | None:intergenic | 20.0% |
| !!! | AAGGAAACAAACAAAATTTT+AGG | - | chr4_1:80893856-80893875 | None:intergenic | 20.0% |
| !!! | TTGATTTTGTTTATTGTGAT+AGG | + | chr4_1:80893906-80893925 | Msa0576810:intron | 20.0% |
| !!! | ACAATTTTAAGTTTTTCCAA+AGG | - | chr4_1:80894094-80894113 | None:intergenic | 20.0% |
| !! | GATGATATAATATGAAAAGT+TGG | + | chr4_1:80894391-80894410 | Msa0576810:intron | 20.0% |
| !!! | TTTTTTTAATGAACACGTAT+AGG | + | chr4_1:80894654-80894673 | Msa0576810:intron | 20.0% |
| !! | AAAGATTGATATTCTAAATC+AGG | - | chr4_1:80894720-80894739 | None:intergenic | 20.0% |
| !! | ACAGGCTATATTATTAATTA+TGG | + | chr4_1:80894924-80894943 | Msa0576810:intron | 20.0% |
| !! | ATTATTAATTATGGAATGTG+AGG | + | chr4_1:80894933-80894952 | Msa0576810:intron | 20.0% |
| ! | TTAGAATCGTCAAAAGAATA+TGG | + | chr4_1:80891733-80891752 | Msa0576810:intron | 25.0% |
| ! | CTATATCCAAATCTAACATA+GGG | - | chr4_1:80891899-80891918 | None:intergenic | 25.0% |
| ! | ACTATATCCAAATCTAACAT+AGG | - | chr4_1:80891900-80891919 | None:intergenic | 25.0% |
| ! | TGTAACTAATTCAATAACAG+AGG | + | chr4_1:80891927-80891946 | Msa0576810:intron | 25.0% |
| ! | ATGAAAATAACGAGCTATAT+AGG | - | chr4_1:80892270-80892289 | None:intergenic | 25.0% |
| !!! | TTTCCTATTTGTTATCAATC+AGG | + | chr4_1:80892300-80892319 | Msa0576810:intron | 25.0% |
| !!! | TTCCTATTTGTTATCAATCA+GGG | + | chr4_1:80892301-80892320 | Msa0576810:intron | 25.0% |
| !! | GCAAAATCAATTTTCAGATA+AGG | + | chr4_1:80892333-80892352 | Msa0576810:CDS | 25.0% |
| !!! | TAATTTCGATTTTGATGACT+TGG | + | chr4_1:80892425-80892444 | Msa0576810:intron | 25.0% |
| !!! | TCTCTATTGGCTTTTATAAT+TGG | - | chr4_1:80892537-80892556 | None:intergenic | 25.0% |
| ! | GTTCATATATCCTTCTATTT+CGG | + | chr4_1:80892653-80892672 | Msa0576810:CDS | 25.0% |
| ! | AACCTGGTTAAAAACAAATA+GGG | - | chr4_1:80892823-80892842 | None:intergenic | 25.0% |
| ! | TCTTAATTAACTTTATCTCC+TGG | + | chr4_1:80892999-80893018 | Msa0576810:intron | 25.0% |
| ! | AAAATTCCTCAATATTCCAT+GGG | - | chr4_1:80893689-80893708 | None:intergenic | 25.0% |
| !! | GAATATTGAGGAATTTTCTA+CGG | + | chr4_1:80893692-80893711 | Msa0576810:CDS | 25.0% |
| !! | AATATTGAGGAATTTTCTAC+GGG | + | chr4_1:80893693-80893712 | Msa0576810:CDS | 25.0% |
| !!! | TGGTTTATTTTACGATTTAC+TGG | + | chr4_1:80893821-80893840 | Msa0576810:intron | 25.0% |
| ! | TTTGTTTATTGTGATAGGAA+TGG | + | chr4_1:80893911-80893930 | Msa0576810:intron | 25.0% |
| ! | ACTAAAGGTTAAAAAATCAG+TGG | - | chr4_1:80894578-80894597 | None:intergenic | 25.0% |
| ! | TATTAAGCAAATCTCACTAA+AGG | - | chr4_1:80894593-80894612 | None:intergenic | 25.0% |
| ! | AAACATTAAAATATTCCAGC+AGG | - | chr4_1:80895307-80895326 | None:intergenic | 25.0% |
| !!! | TGATAACTGGTGATTTTTTA+GGG | - | chr4_1:80895378-80895397 | None:intergenic | 25.0% |
| ! | TACAATTAATTGCTGATAAC+TGG | - | chr4_1:80895391-80895410 | None:intergenic | 25.0% |
| !!! | TCCATGTTTCAATTTTAGTA+GGG | - | chr4_1:80895418-80895437 | None:intergenic | 25.0% |
| ! | AAGAAATGAAGAAGAAGAAA+TGG | + | chr4_1:80895675-80895694 | Msa0576810:CDS | 25.0% |
| TGATGATAAGATCATACAGT+AGG | - | chr4_1:80891218-80891237 | None:intergenic | 30.0% | |
| ! | TTTTTGTTGGAAGAACAAAG+TGG | - | chr4_1:80891559-80891578 | None:intergenic | 30.0% |
| ACAAGTAGAATTACCATGAT+CGG | - | chr4_1:80891586-80891605 | None:intergenic | 30.0% | |
| TTGTTTGAGTGAATTACCAA+AGG | + | chr4_1:80891825-80891844 | Msa0576810:intron | 30.0% | |
| ACTAAACCCTATGTTAGATT+TGG | + | chr4_1:80891890-80891909 | Msa0576810:intron | 30.0% | |
| !! | GTTGTTTTCATTAGCTATCT+TGG | - | chr4_1:80892125-80892144 | None:intergenic | 30.0% |
| ! | TTCCCTGATTGATAACAAAT+AGG | - | chr4_1:80892306-80892325 | None:intergenic | 30.0% |
| ! | AGAAGGATATATGAACCTTT+TGG | - | chr4_1:80892649-80892668 | None:intergenic | 30.0% |
| ! | ATGAGGTACTATTTCATGAT+TGG | + | chr4_1:80892788-80892807 | Msa0576810:intron | 30.0% |
| !!! | TTCCCTATTTGTTTTTAACC+AGG | + | chr4_1:80892818-80892837 | Msa0576810:intron | 30.0% |
| GAACCTGGTTAAAAACAAAT+AGG | - | chr4_1:80892824-80892843 | None:intergenic | 30.0% | |
| AACTAAACAAATTACTTCGC+AGG | + | chr4_1:80892866-80892885 | Msa0576810:CDS | 30.0% | |
| AGCTTACACAAATATTCTTG+CGG | + | chr4_1:80892889-80892908 | Msa0576810:CDS | 30.0% | |
| GGAGAATGAAAAAGTAGTAT+CGG | + | chr4_1:80892910-80892929 | Msa0576810:intron | 30.0% | |
| AGTAACTTATACAGAAGAAC+TGG | + | chr4_1:80893058-80893077 | Msa0576810:CDS | 30.0% | |
| TGTTCATAACTTTACACTCT+AGG | - | chr4_1:80893151-80893170 | None:intergenic | 30.0% | |
| TTCTATTCATCTTGTATAGC+AGG | - | chr4_1:80893180-80893199 | None:intergenic | 30.0% | |
| ATTATGTCCTTCAATCCATA+AGG | - | chr4_1:80893407-80893426 | None:intergenic | 30.0% | |
| !! | TATTGATGATGTTGTTCAAC+AGG | + | chr4_1:80893574-80893593 | Msa0576810:intron | 30.0% |
| GAAAATTCCTCAATATTCCA+TGG | - | chr4_1:80893690-80893709 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTCTGTCTTTTAG+AGG | + | chr4_1:80893784-80893803 | Msa0576810:intron | 30.0% |
| GTTTGTTTCCTTTATATGTG+AGG | + | chr4_1:80893864-80893883 | Msa0576810:intron | 30.0% | |
| AAATTACCATGTTCTACCTT+TGG | + | chr4_1:80894075-80894094 | Msa0576810:intron | 30.0% | |
| GTAAGTTGTGTAACCTTTAT+AGG | + | chr4_1:80894136-80894155 | Msa0576810:intron | 30.0% | |
| TAACCTTTATAGGATAAGCT+TGG | + | chr4_1:80894146-80894165 | Msa0576810:intron | 30.0% | |
| ! | ATGAGGATATCTTTTGATGA+GGG | - | chr4_1:80894242-80894261 | None:intergenic | 30.0% |
| ! | AATGAGGATATCTTTTGATG+AGG | - | chr4_1:80894243-80894262 | None:intergenic | 30.0% |
| AAAACAACCAAGTGTAAAGA+GGG | + | chr4_1:80894433-80894452 | Msa0576810:intron | 30.0% | |
| !! | AGTTAAGTATTGGCTTTCTT+TGG | - | chr4_1:80894635-80894654 | None:intergenic | 30.0% |
| !! | GAGTTTGCTTTTATGATTAC+AGG | + | chr4_1:80894906-80894925 | Msa0576810:intron | 30.0% |
| !! | AATGCTTTGAAGAAATGACA+TGG | + | chr4_1:80894969-80894988 | Msa0576810:intron | 30.0% |
| !! | ATGCTTTGAAGAAATGACAT+GGG | + | chr4_1:80894970-80894989 | Msa0576810:intron | 30.0% |
| TGATTCGCAAATTCTATATG+TGG | - | chr4_1:80895011-80895030 | None:intergenic | 30.0% | |
| !! | TTTCTCCTTTACAGTTTTGA+TGG | + | chr4_1:80895062-80895081 | Msa0576810:intron | 30.0% |
| !!! | AAAAATCACTTTTTACCTGC+TGG | + | chr4_1:80895289-80895308 | Msa0576810:intron | 30.0% |
| TGAGCAGCAAAAACAATAAA+AGG | - | chr4_1:80895351-80895370 | None:intergenic | 30.0% | |
| !!! | CTGATAACTGGTGATTTTTT+AGG | - | chr4_1:80895379-80895398 | None:intergenic | 30.0% |
| !! | CATGTTTCAATTTTAGTAGG+GGG | - | chr4_1:80895416-80895435 | None:intergenic | 30.0% |
| !! | CCATGTTTCAATTTTAGTAG+GGG | - | chr4_1:80895417-80895436 | None:intergenic | 30.0% |
| !! | CTCCATGTTTCAATTTTAGT+AGG | - | chr4_1:80895419-80895438 | None:intergenic | 30.0% |
| TGTTAAGCATGAAGGAAAAA+GGG | - | chr4_1:80895504-80895523 | None:intergenic | 30.0% | |
| !! | AAGAAAAGTGTTAAGCATGA+AGG | - | chr4_1:80895512-80895531 | None:intergenic | 30.0% |
| !! | GTTTGGAGTTGATAGTTAAT+GGG | - | chr4_1:80895576-80895595 | None:intergenic | 30.0% |
| CAAAGGTAAACAAAAGGAAA+AGG | + | chr4_1:80895700-80895719 | Msa0576810:CDS | 30.0% | |
| AAAGGAAAAGGTTAACAACA+TGG | + | chr4_1:80895712-80895731 | Msa0576810:CDS | 30.0% | |
| !!! | AACATGGTTTTGTTTGATCA+AGG | + | chr4_1:80895728-80895747 | Msa0576810:CDS | 30.0% |
| ! | TCTCATGATTAATGGATCTT+TGG | + | chr4_1:80895820-80895839 | Msa0576810:CDS | 30.0% |
| GTTCTTCAACATGCTTTCTT+CGG | - | chr4_1:80891404-80891423 | None:intergenic | 35.0% | |
| AACCTGTTGTACATTTGTCA+GGG | - | chr4_1:80891715-80891734 | None:intergenic | 35.0% | |
| TAACCTGTTGTACATTTGTC+AGG | - | chr4_1:80891716-80891735 | None:intergenic | 35.0% | |
| ACTAACTAACCTGCAATTTG+CGG | - | chr4_1:80891770-80891789 | None:intergenic | 35.0% | |
| ! | CAGGTTAGTTAGTTAGTTAG+TGG | + | chr4_1:80891777-80891796 | Msa0576810:intron | 35.0% |
| TGGTAATTCACTCAAACAAG+TGG | - | chr4_1:80891824-80891843 | None:intergenic | 35.0% | |
| GATGTGATGAACTGTAATGT+TGG | + | chr4_1:80891969-80891988 | Msa0576810:intron | 35.0% | |
| ! | GATGAACTGTAATGTTGGTT+TGG | + | chr4_1:80891974-80891993 | Msa0576810:intron | 35.0% |
| TGACTGTTACTCTTGAACTT+GGG | - | chr4_1:80892003-80892022 | None:intergenic | 35.0% | |
| ! | ATGTCATCTTTTATCGGATG+TGG | - | chr4_1:80892069-80892088 | None:intergenic | 35.0% |
| TCAAGTTCTTTAGCCAAACA+TGG | + | chr4_1:80892225-80892244 | Msa0576810:intron | 35.0% | |
| TGCAAAATTTGAGCCATGTT+TGG | - | chr4_1:80892241-80892260 | None:intergenic | 35.0% | |
| GTAAACCTAAGGAACATCTT+AGG | - | chr4_1:80892375-80892394 | None:intergenic | 35.0% | |
| TTAGATTGACGAGATTGCTA+AGG | + | chr4_1:80892491-80892510 | Msa0576810:intron | 35.0% | |
| TAGATTGACGAGATTGCTAA+GGG | + | chr4_1:80892492-80892511 | Msa0576810:intron | 35.0% | |
| AGAAGCTACAAGTTCTCTAT+TGG | - | chr4_1:80892550-80892569 | None:intergenic | 35.0% | |
| ! | GAACTTGTAGCTTCTAAGAA+TGG | + | chr4_1:80892555-80892574 | Msa0576810:CDS | 35.0% |
| ! | TTGTAGCTTCTAAGAATGGA+GGG | + | chr4_1:80892559-80892578 | Msa0576810:CDS | 35.0% |
| !!! | ATCACCTTTAGTTTTCAGTG+CGG | + | chr4_1:80892593-80892612 | Msa0576810:CDS | 35.0% |
| !!! | TTTAGTTTTCAGTGCGGATT+GGG | + | chr4_1:80892599-80892618 | Msa0576810:CDS | 35.0% |
| ATCCTTCTATTTCGGAGATA+CGG | + | chr4_1:80892661-80892680 | Msa0576810:CDS | 35.0% | |
| GCAATATCTTCTTCAGATTC+TGG | - | chr4_1:80892690-80892709 | None:intergenic | 35.0% | |
| TTTAACCAGGTTCTTGAGTT+AGG | + | chr4_1:80892831-80892850 | Msa0576810:intron | 35.0% | |
| TTCAAGAATAGGATTGTACC+TGG | - | chr4_1:80893033-80893052 | None:intergenic | 35.0% | |
| GTTACTACAGCTTCAAGAAT+AGG | - | chr4_1:80893044-80893063 | None:intergenic | 35.0% | |
| AACAACATAGATAGACTCCT+TGG | - | chr4_1:80893121-80893140 | None:intergenic | 35.0% | |
| CATATACAGTACATCCCAAA+AGG | - | chr4_1:80893314-80893333 | None:intergenic | 35.0% | |
| TGCCAGAATACAAAACAACA+TGG | + | chr4_1:80893432-80893451 | Msa0576810:CDS | 35.0% | |
| GCCAGAATACAAAACAACAT+GGG | + | chr4_1:80893433-80893452 | Msa0576810:CDS | 35.0% | |
| CCAGAATACAAAACAACATG+GGG | + | chr4_1:80893434-80893453 | Msa0576810:CDS | 35.0% | |
| AAGTTATTGACATGGAAGCT+TGG | + | chr4_1:80893477-80893496 | Msa0576810:intron | 35.0% | |
| TGGAAGCTTGGATCTATAAA+AGG | + | chr4_1:80893489-80893508 | Msa0576810:intron | 35.0% | |
| ! | CTTATTGCAAAGCTTGTTTC+TGG | + | chr4_1:80893618-80893637 | Msa0576810:CDS | 35.0% |
| !! | AAAGCTTGTTTCTGGATCAT+TGG | + | chr4_1:80893626-80893645 | Msa0576810:CDS | 35.0% |
| ! | AAACAAAAGTGCAAGCGTTT+AGG | - | chr4_1:80893773-80893792 | None:intergenic | 35.0% |
| TAGAGGTCCTTTCTGTTATA+TGG | + | chr4_1:80893801-80893820 | Msa0576810:intron | 35.0% | |
| AATGAGCATATCAGAAAGCT+TGG | + | chr4_1:80894043-80894062 | Msa0576810:CDS | 35.0% | |
| ! | GTTTTTCCAAAGGTAGAACA+TGG | - | chr4_1:80894084-80894103 | None:intergenic | 35.0% |
| ! | CTGTTGTTCTGGATATTGTT+CGG | + | chr4_1:80894198-80894217 | Msa0576810:CDS | 35.0% |
| ! | TGTTGTTCTGGATATTGTTC+GGG | + | chr4_1:80894199-80894218 | Msa0576810:CDS | 35.0% |
| GTTGGTTAAAGTAGTTGTAG+TGG | + | chr4_1:80894409-80894428 | Msa0576810:intron | 35.0% | |
| CAAAACAACCAAGTGTAAAG+AGG | + | chr4_1:80894432-80894451 | Msa0576810:intron | 35.0% | |
| AAACAACCAAGTGTAAAGAG+GGG | + | chr4_1:80894434-80894453 | Msa0576810:intron | 35.0% | |
| AATCGTTATCTCTCTCAGTA+AGG | - | chr4_1:80894743-80894762 | None:intergenic | 35.0% | |
| CTGAGAGAGATAACGATTAT+TGG | + | chr4_1:80894745-80894764 | Msa0576810:intron | 35.0% | |
| ! | TAAAGCATCCACTTGCAATT+AGG | - | chr4_1:80894821-80894840 | None:intergenic | 35.0% |
| AACGTACGAATATGACAAGA+AGG | + | chr4_1:80895100-80895119 | Msa0576810:intron | 35.0% | |
| ! | CATGATTTTCAACTACCACA+CGG | + | chr4_1:80895193-80895212 | Msa0576810:intron | 35.0% |
| CCCCTACTAAAATTGAAACA+TGG | + | chr4_1:80895414-80895433 | Msa0576810:intron | 35.0% | |
| GTGTTAAGCATGAAGGAAAA+AGG | - | chr4_1:80895505-80895524 | None:intergenic | 35.0% | |
| !! | TTGATGGTGATGAAGAACAT+GGG | - | chr4_1:80895549-80895568 | None:intergenic | 35.0% |
| ! | ATAGTTAATGGGTAGGTTGA+TGG | - | chr4_1:80895565-80895584 | None:intergenic | 35.0% |
| !! | GGTTTGGAGTTGATAGTTAA+TGG | - | chr4_1:80895577-80895596 | None:intergenic | 35.0% |
| AAGAAGAAGAAATGGAGCAA+AGG | + | chr4_1:80895683-80895702 | Msa0576810:CDS | 35.0% | |
| ATGGAGCAAAGGTAAACAAA+AGG | + | chr4_1:80895694-80895713 | Msa0576810:CDS | 35.0% | |
| TTCAGTGAGAAGCTTATCAT+AGG | - | chr4_1:80895756-80895775 | None:intergenic | 35.0% | |
| GGAGTGATGAGTTTGTATTT+AGG | - | chr4_1:80895782-80895801 | None:intergenic | 35.0% | |
| TCTGATCGTCTCATGATTAA+TGG | + | chr4_1:80895812-80895831 | Msa0576810:CDS | 35.0% | |
| TCGTGCAATCAAAGATTTGA+TGG | + | chr4_1:80895847-80895866 | Msa0576810:CDS | 35.0% | |
| ! | AGATTTGATGGCAAGATGTT+TGG | + | chr4_1:80895859-80895878 | Msa0576810:CDS | 35.0% |
| AACTCTGAACTTAACGAGAG+CGG | + | chr4_1:80891377-80891396 | Msa0576810:five_prime_UTR | 40.0% | |
| GGTTCAGAAACTGCATTTAC+AGG | - | chr4_1:80891436-80891455 | None:intergenic | 40.0% | |
| !!! | CATGATCGGTTGGTTTTTGT+TGG | - | chr4_1:80891572-80891591 | None:intergenic | 40.0% |
| CAACAAAAACCAACCGATCA+TGG | + | chr4_1:80891570-80891589 | Msa0576810:CDS | 40.0% | |
| GTAGAATTACCATGATCGGT+TGG | - | chr4_1:80891582-80891601 | None:intergenic | 40.0% | |
| TGGACAGTAAGAAACAGAGT+TGG | - | chr4_1:80891630-80891649 | None:intergenic | 40.0% | |
| ACCTGTTGTACATTTGTCAG+GGG | - | chr4_1:80891714-80891733 | None:intergenic | 40.0% | |
| AATATTCTGCCGCAAATTGC+AGG | + | chr4_1:80891758-80891777 | Msa0576810:intron | 40.0% | |
| GACTGTTACTCTTGAACTTG+GGG | - | chr4_1:80892002-80892021 | None:intergenic | 40.0% | |
| CTGACTGTTACTCTTGAACT+TGG | - | chr4_1:80892004-80892023 | None:intergenic | 40.0% | |
| GTTGGCATCAAGTAAACCTA+AGG | - | chr4_1:80892386-80892405 | None:intergenic | 40.0% | |
| ACTTGATGCCAACTTCTTCA+AGG | + | chr4_1:80892393-80892412 | Msa0576810:CDS | 40.0% | |
| CTGATCATCCTTGAAGAAGT+TGG | - | chr4_1:80892404-80892423 | None:intergenic | 40.0% | |
| CAACTTCTTCAAGGATGATC+AGG | + | chr4_1:80892402-80892421 | Msa0576810:CDS | 40.0% | |
| ! | GAGTTGTTACAGTTGATGCT+TGG | + | chr4_1:80892447-80892466 | Msa0576810:intron | 40.0% |
| ! | TTGTTACAGTTGATGCTTGG+TGG | + | chr4_1:80892450-80892469 | Msa0576810:intron | 40.0% |
| AGCAATCTCGTCAATCTAAG+AGG | - | chr4_1:80892490-80892509 | None:intergenic | 40.0% | |
| ! | CTTGTAGCTTCTAAGAATGG+AGG | + | chr4_1:80892558-80892577 | Msa0576810:CDS | 40.0% |
| GCACTGAAAACTAAAGGTGA+TGG | - | chr4_1:80892594-80892613 | None:intergenic | 40.0% | |
| CAATCCGCACTGAAAACTAA+AGG | - | chr4_1:80892600-80892619 | None:intergenic | 40.0% | |
| !!! | CTTTAGTTTTCAGTGCGGAT+TGG | + | chr4_1:80892598-80892617 | Msa0576810:CDS | 40.0% |
| ! | TGGGATTCCTTATGGATTGA+AGG | + | chr4_1:80893397-80893416 | Msa0576810:CDS | 40.0% |
| !!! | CCCCATGTTGTTTTGTATTC+TGG | - | chr4_1:80893437-80893456 | None:intergenic | 40.0% |
| ! | TTCAACAGGTTGAAATCTGC+AGG | + | chr4_1:80893588-80893607 | Msa0576810:intron | 40.0% |
| ! | TCAACAGGTTGAAATCTGCA+GGG | + | chr4_1:80893589-80893608 | Msa0576810:intron | 40.0% |
| !! | CATTGGCTTATGATGATGTC+TGG | + | chr4_1:80893643-80893662 | Msa0576810:CDS | 40.0% |
| ! | GCTTATGATGATGTCTGGTT+TGG | + | chr4_1:80893648-80893667 | Msa0576810:CDS | 40.0% |
| !! | TATGATGATGTCTGGTTTGG+AGG | + | chr4_1:80893651-80893670 | Msa0576810:CDS | 40.0% |
| !! | TAATTGAAGAGTACCTGCTG+AGG | - | chr4_1:80893745-80893764 | None:intergenic | 40.0% |
| AAAGTGCAAGCGTTTAGGAA+GGG | - | chr4_1:80893768-80893787 | None:intergenic | 40.0% | |
| ! | AAAAGTGCAAGCGTTTAGGA+AGG | - | chr4_1:80893769-80893788 | None:intergenic | 40.0% |
| GTTTCTGAACCTATCGCAAA+TGG | - | chr4_1:80893939-80893958 | None:intergenic | 40.0% | |
| AACAACAGCACAATCAGTTG+CGG | - | chr4_1:80894186-80894205 | None:intergenic | 40.0% | |
| ! | AACTGATTGTGCTGTTGTTC+TGG | + | chr4_1:80894187-80894206 | Msa0576810:CDS | 40.0% |
| ! | GTTGTTCTGGATATTGTTCG+GGG | + | chr4_1:80894200-80894219 | Msa0576810:CDS | 40.0% |
| ! | TCTTTTGATGAGGGATCTTC+AGG | - | chr4_1:80894233-80894252 | None:intergenic | 40.0% |
| AACAACCAAGTGTAAAGAGG+GGG | + | chr4_1:80894435-80894454 | Msa0576810:intron | 40.0% | |
| TGGGTCAAATGCTTTATGAG+TGG | + | chr4_1:80894541-80894560 | Msa0576810:intron | 40.0% | |
| TCCTTTCTCCTAATTGCAAG+TGG | + | chr4_1:80894810-80894829 | Msa0576810:intron | 40.0% | |
| TCCACTTGCAATTAGGAGAA+AGG | - | chr4_1:80894814-80894833 | None:intergenic | 40.0% | |
| ! | TGGATGCTTTAAGCATGCTT+TGG | + | chr4_1:80894830-80894849 | Msa0576810:intron | 40.0% |
| CAAGACTCAAAAGAAAGCAG+AGG | - | chr4_1:80894887-80894906 | None:intergenic | 40.0% | |
| GCGAATCAGAGATATTTGCT+TGG | + | chr4_1:80895023-80895042 | Msa0576810:intron | 40.0% | |
| !! | TGGTGCCATCAAAACTGTAA+AGG | - | chr4_1:80895070-80895089 | None:intergenic | 40.0% |
| TTCGTACGTTCAAACCAAAG+TGG | - | chr4_1:80895090-80895109 | None:intergenic | 40.0% | |
| ATGCACAAGGGAGGAAATTA+AGG | + | chr4_1:80895252-80895271 | Msa0576810:intron | 40.0% | |
| CTTCACTAACACCTGAGTTA+CGG | + | chr4_1:80895453-80895472 | Msa0576810:intron | 40.0% | |
| TGAGATTCAAACCGTAACTC+AGG | - | chr4_1:80895467-80895486 | None:intergenic | 40.0% | |
| !! | GTTGATGGTGATGAAGAACA+TGG | - | chr4_1:80895550-80895569 | None:intergenic | 40.0% |
| !! | GGAGTTGATAGTTAATGGGT+AGG | - | chr4_1:80895572-80895591 | None:intergenic | 40.0% |
| CTATCAACTCCAAACCCTAA+TGG | + | chr4_1:80895581-80895600 | Msa0576810:intron | 40.0% | |
| TAATCATGAGACGATCAGAG+AGG | - | chr4_1:80895811-80895830 | None:intergenic | 40.0% | |
| TGATGGCAAGATGTTTGGTT+AGG | + | chr4_1:80895864-80895883 | Msa0576810:CDS | 40.0% | |
| TCAGAATTGAACCTGCGTCT+GGG | - | chr4_1:80891358-80891377 | None:intergenic | 45.0% | |
| TTCAGAATTGAACCTGCGTC+TGG | - | chr4_1:80891359-80891378 | None:intergenic | 45.0% | |
| ATATGCGAGAAGGGGAACAA+CGG | - | chr4_1:80891527-80891546 | None:intergenic | 45.0% | |
| TGAGGAAGGATATGCGAGAA+GGG | - | chr4_1:80891536-80891555 | None:intergenic | 45.0% | |
| GAAGAACAAAGTGGTGAGGA+AGG | - | chr4_1:80891550-80891569 | None:intergenic | 45.0% | |
| GTTGGAAGAACAAAGTGGTG+AGG | - | chr4_1:80891554-80891573 | None:intergenic | 45.0% | |
| TTGTACATTTGTCAGGGGTG+TGG | - | chr4_1:80891709-80891728 | None:intergenic | 45.0% | |
| ACCCCTGACAAATGTACAAC+AGG | + | chr4_1:80891710-80891729 | Msa0576810:intron | 45.0% | |
| GAGGAAAGGACAATAGCCTT+TGG | - | chr4_1:80891844-80891863 | None:intergenic | 45.0% | |
| CCTAAGGAACATCTTAGGCA+GGG | - | chr4_1:80892370-80892389 | None:intergenic | 45.0% | |
| ACCTAAGGAACATCTTAGGC+AGG | - | chr4_1:80892371-80892390 | None:intergenic | 45.0% | |
| CTCCGTATCTCCGAAATAGA+AGG | - | chr4_1:80892666-80892685 | None:intergenic | 45.0% | |
| GTTCACCTAACTCAAGAACC+TGG | - | chr4_1:80892839-80892858 | None:intergenic | 45.0% | |
| GCTGATGAATTGCTTAGCCA+AGG | + | chr4_1:80893101-80893120 | Msa0576810:CDS | 45.0% | |
| CAAAAGGATGCAGAAGGTTG+CGG | - | chr4_1:80893298-80893317 | None:intergenic | 45.0% | |
| ! | GCAACCTTCTGCATCCTTTT+GGG | + | chr4_1:80893297-80893316 | Msa0576810:intron | 45.0% |
| ACATCCCAAAAGGATGCAGA+AGG | - | chr4_1:80893304-80893323 | None:intergenic | 45.0% | |
| TTCATTGAAGGGCCTCTTCA+TGG | + | chr4_1:80893377-80893396 | Msa0576810:intron | 45.0% | |
| TCATTGAAGGGCCTCTTCAT+GGG | + | chr4_1:80893378-80893397 | Msa0576810:intron | 45.0% | |
| CCATAAGGAATCCCATGAAG+AGG | - | chr4_1:80893392-80893411 | None:intergenic | 45.0% | |
| CCTCTTCATGGGATTCCTTA+TGG | + | chr4_1:80893389-80893408 | Msa0576810:CDS | 45.0% | |
| ! | CAACAGGTTGAAATCTGCAG+GGG | + | chr4_1:80893590-80893609 | Msa0576810:intron | 45.0% |
| CTCAATATTCCATGGGTTCC+TGG | - | chr4_1:80893682-80893701 | None:intergenic | 45.0% | |
| CAGGAACCCATGGAATATTG+AGG | + | chr4_1:80893680-80893699 | Msa0576810:CDS | 45.0% | |
| GGAATGGTTCCATTTGCGAT+AGG | + | chr4_1:80893927-80893946 | Msa0576810:intron | 45.0% | |
| ! | ACTGCATTGCGTCCAACTTT+TGG | + | chr4_1:80893999-80894018 | Msa0576810:CDS | 45.0% |
| ! | CGTCCAACTTTTGGTACTGT+TGG | + | chr4_1:80894008-80894027 | Msa0576810:CDS | 45.0% |
| CGACCAACAGTACCAAAAGT+TGG | - | chr4_1:80894014-80894033 | None:intergenic | 45.0% | |
| TTTGGTACTGTTGGTCGAAC+TGG | + | chr4_1:80894017-80894036 | Msa0576810:CDS | 45.0% | |
| GGGCCAAGCTTATCCTATAA+AGG | - | chr4_1:80894152-80894171 | None:intergenic | 45.0% | |
| CAGTTGCGGATCTACAGAAA+GGG | - | chr4_1:80894172-80894191 | None:intergenic | 45.0% | |
| TCAGTTGCGGATCTACAGAA+AGG | - | chr4_1:80894173-80894192 | None:intergenic | 45.0% | |
| ACAACCAAGTGTAAAGAGGG+GGG | + | chr4_1:80894436-80894455 | Msa0576810:intron | 45.0% | |
| TCCATGGGGTACAAATTGGA+CGG | - | chr4_1:80894516-80894535 | None:intergenic | 45.0% | |
| CATCTCCATGGGGTACAAAT+TGG | - | chr4_1:80894520-80894539 | None:intergenic | 45.0% | |
| CAATTTGTACCCCATGGAGA+TGG | + | chr4_1:80894518-80894537 | Msa0576810:intron | 45.0% | |
| ATTTGACCCACCATCTCCAT+GGG | - | chr4_1:80894531-80894550 | None:intergenic | 45.0% | |
| !! | CAGTTTTGATGGCACCACTT+TGG | + | chr4_1:80895073-80895092 | Msa0576810:intron | 45.0% |
| ! | GATTTTCAACTACCACACGG+TGG | + | chr4_1:80895196-80895215 | Msa0576810:intron | 45.0% |
| ! | CACAACTCTTTTGCTTGTGC+AGG | - | chr4_1:80895229-80895248 | None:intergenic | 45.0% |
| AAGAGTTGTGCACATGCACA+AGG | + | chr4_1:80895239-80895258 | Msa0576810:intron | 45.0% | |
| AGAGTTGTGCACATGCACAA+GGG | + | chr4_1:80895240-80895259 | Msa0576810:intron | 45.0% | |
| AGGAAATTAAGGACAGCTGG+CGG | + | chr4_1:80895263-80895282 | Msa0576810:intron | 45.0% | |
| !! | ATCCTTCTTCGGTGCCATTA+GGG | - | chr4_1:80895598-80895617 | None:intergenic | 45.0% |
| !! | TATCCTTCTTCGGTGCCATT+AGG | - | chr4_1:80895599-80895618 | None:intergenic | 45.0% |
| ! | AATGGCACCGAAGAAGGATA+AGG | + | chr4_1:80895599-80895618 | Msa0576810:intron | 45.0% |
| !! | GATTTCGCTGGCTTTGATGA+CGG | - | chr4_1:80895633-80895652 | None:intergenic | 45.0% |
| TCATCAAAGCCAGCGAAATC+AGG | + | chr4_1:80895633-80895652 | Msa0576810:intron | 45.0% | |
| GGCAAGATGTTTGGTTAGGT+TGG | + | chr4_1:80895868-80895887 | Msa0576810:CDS | 45.0% | |
| !!! | TTTAGTTTTAAAATAAATTT+TGG | + | chr4_1:80893352-80893371 | Msa0576810:intron | 5.0% |
| AAGAAAGAACTCCCAGACGC+AGG | + | chr4_1:80891344-80891363 | Msa0576810:five_prime_UTR | 50.0% | |
| GAGGAAGGATATGCGAGAAG+GGG | - | chr4_1:80891535-80891554 | None:intergenic | 50.0% | |
| GTGAGGAAGGATATGCGAGA+AGG | - | chr4_1:80891537-80891556 | None:intergenic | 50.0% | |
| CCCTGCCTAAGATGTTCCTT+AGG | + | chr4_1:80892367-80892386 | Msa0576810:CDS | 50.0% | |
| !! | CTTTTGGTTGCGCAGTGAAC+TGG | - | chr4_1:80892633-80892652 | None:intergenic | 50.0% |
| CAGTTCACTGCGCAACCAAA+AGG | + | chr4_1:80892631-80892650 | Msa0576810:CDS | 50.0% | |
| ! | CGCAACCTTCTGCATCCTTT+TGG | + | chr4_1:80893296-80893315 | Msa0576810:intron | 50.0% |
| ! | TTTTCTACGGGTTCCTCTGC+TGG | + | chr4_1:80893705-80893724 | Msa0576810:CDS | 50.0% |
| CACGCACGCCTCACATATAA+AGG | - | chr4_1:80893875-80893894 | None:intergenic | 50.0% | |
| GCGATAGGTTCAGAAACAGC+TGG | + | chr4_1:80893942-80893961 | Msa0576810:CDS | 50.0% | |
| TCGAGCTGCAGGGTAAGTTA+TGG | - | chr4_1:80893970-80893989 | None:intergenic | 50.0% | |
| ACCGTCCAATTTGTACCCCA+TGG | + | chr4_1:80894512-80894531 | Msa0576810:intron | 50.0% | |
| TTTGTACCCCATGGAGATGG+TGG | + | chr4_1:80894521-80894540 | Msa0576810:intron | 50.0% | |
| TTGTACCCCATGGAGATGGT+GGG | + | chr4_1:80894522-80894541 | Msa0576810:intron | 50.0% | |
| TTTGACCCACCATCTCCATG+GGG | - | chr4_1:80894530-80894549 | None:intergenic | 50.0% | |
| CATTTGACCCACCATCTCCA+TGG | - | chr4_1:80894532-80894551 | None:intergenic | 50.0% | |
| GGGAGGAAATTAAGGACAGC+TGG | + | chr4_1:80895260-80895279 | Msa0576810:intron | 50.0% | |
| !! | TCTTCGGTGCCATTAGGGTT+TGG | - | chr4_1:80895593-80895612 | None:intergenic | 50.0% |
| ! | AACCCTAATGGCACCGAAGA+AGG | + | chr4_1:80895593-80895612 | Msa0576810:intron | 50.0% |
| GGTGGTGCCTTATCCTTCTT+CGG | - | chr4_1:80895609-80895628 | None:intergenic | 50.0% | |
| TCAAAGCCAGCGAAATCAGG+AGG | + | chr4_1:80895636-80895655 | Msa0576810:intron | 50.0% | |
| TTTCCTCCTCCTGATTTCGC+TGG | - | chr4_1:80895645-80895664 | None:intergenic | 50.0% | |
| AGACGATCAGAGAGGACTGA+AGG | - | chr4_1:80895803-80895822 | None:intergenic | 50.0% | |
| GCAGTTTCTGAACCGACACG+TGG | + | chr4_1:80891442-80891461 | Msa0576810:CDS | 55.0% | |
| TATCTCCTGGAGTGAACGCC+AGG | + | chr4_1:80893012-80893031 | Msa0576810:intron | 55.0% | |
| TTGTACCTGGCGTTCACTCC+AGG | - | chr4_1:80893020-80893039 | None:intergenic | 55.0% | |
| !! | TCTGGTTTGGAGGCAGAACC+AGG | + | chr4_1:80893661-80893680 | Msa0576810:CDS | 55.0% |
| ! | CTGCTGAGGTACTTGCTGCA+GGG | - | chr4_1:80893731-80893750 | None:intergenic | 55.0% |
| ACTTACCCTGCAGCTCGATG+CGG | + | chr4_1:80893972-80893991 | Msa0576810:CDS | 55.0% | |
| TAACACCGCATCGAGCTGCA+GGG | - | chr4_1:80893980-80893999 | None:intergenic | 55.0% | |
| CCAGGAACGGGTCATCAATG+AGG | - | chr4_1:80894259-80894278 | None:intergenic | 55.0% | |
| ! | CCTCATTGATGACCCGTTCC+TGG | + | chr4_1:80894256-80894275 | Msa0576810:intron | 55.0% |
| ACCAAGTGTAAAGAGGGGGG+AGG | + | chr4_1:80894439-80894458 | Msa0576810:intron | 55.0% | |
| CCAAGTGTAAAGAGGGGGGA+GGG | + | chr4_1:80894440-80894459 | Msa0576810:intron | 55.0% | |
| GTTGTGCACATGCACAAGGG+AGG | + | chr4_1:80895243-80895262 | Msa0576810:intron | 55.0% | |
| !! | TTCGCTGGCTTTGATGACGG+TGG | - | chr4_1:80895630-80895649 | None:intergenic | 55.0% |
| AAGCCAGCGAAATCAGGAGG+AGG | + | chr4_1:80895639-80895658 | Msa0576810:intron | 55.0% | |
| TCTGAACCGACACGTGGCAG+AGG | + | chr4_1:80891448-80891467 | Msa0576810:CDS | 60.0% | |
| GAGGCAGAACCAGGAACCCA+TGG | + | chr4_1:80893670-80893689 | Msa0576810:CDS | 60.0% | |
| ! | CCTGCTGAGGTACTTGCTGC+AGG | - | chr4_1:80893732-80893751 | None:intergenic | 60.0% |
| CCTGCAGCAAGTACCTCAGC+AGG | + | chr4_1:80893729-80893748 | Msa0576810:CDS | 60.0% | |
| GTAACACCGCATCGAGCTGC+AGG | - | chr4_1:80893981-80894000 | None:intergenic | 60.0% | |
| CCCTCCCCCCTCTTTACACT+TGG | - | chr4_1:80894443-80894462 | None:intergenic | 60.0% | |
| AGTGTAAAGAGGGGGGAGGG+TGG | + | chr4_1:80894443-80894462 | Msa0576810:intron | 60.0% | |
| GCAGGCTAAATGCCACCGTG+TGG | - | chr4_1:80895211-80895230 | None:intergenic | 60.0% | |
| !! | GCTGGCTTTGATGACGGTGG+TGG | - | chr4_1:80895627-80895646 | None:intergenic | 60.0% |
| GAACCGACACGTGGCAGAGG+TGG | + | chr4_1:80891451-80891470 | Msa0576810:CDS | 65.0% | |
| CCACCACCTCTGCCACGTGT+CGG | - | chr4_1:80891457-80891476 | None:intergenic | 65.0% | |
| ! | ACTTGCTGCAGGGCCAGCAG+AGG | - | chr4_1:80893721-80893740 | None:intergenic | 65.0% |
| CCGACACGTGGCAGAGGTGG+TGG | + | chr4_1:80891454-80891473 | Msa0576810:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 80891167 | 80895940 | 80891167 | ID=Msa0576810;Name=Msa0576810 |
| chr4_1 | mRNA | 80891167 | 80895940 | 80891167 | ID=Msa0576810-mRNA-1;Parent=Msa0576810;Name=Msa0576810-mRNA-1;_AED=0.15;_eAED=0.16;_QI=124|0.7|0.63|1|0.9|0.81|11|0|489 |
| chr4_1 | exon | 80891167 | 80891220 | 80891167 | ID=Msa0576810-mRNA-1:exon:29090;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80891342 | 80891591 | 80891342 | ID=Msa0576810-mRNA-1:exon:29091;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80892322 | 80892423 | 80892322 | ID=Msa0576810-mRNA-1:exon:29092;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80892495 | 80892719 | 80892495 | ID=Msa0576810-mRNA-1:exon:29093;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80892840 | 80892922 | 80892840 | ID=Msa0576810-mRNA-1:exon:29094;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80893034 | 80893137 | 80893034 | ID=Msa0576810-mRNA-1:exon:29095;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80893387 | 80893462 | 80893387 | ID=Msa0576810-mRNA-1:exon:29096;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80893596 | 80893750 | 80893596 | ID=Msa0576810-mRNA-1:exon:29097;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80893928 | 80894064 | 80893928 | ID=Msa0576810-mRNA-1:exon:29098;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80894158 | 80894270 | 80894158 | ID=Msa0576810-mRNA-1:exon:29099;Parent=Msa0576810-mRNA-1 |
| chr4_1 | exon | 80895646 | 80895940 | 80895646 | ID=Msa0576810-mRNA-1:exon:29100;Parent=Msa0576810-mRNA-1 |
| chr4_1 | five_prime_UTR | 80891167 | 80891220 | 80891167 | ID=Msa0576810-mRNA-1:five_prime_utr;Parent=Msa0576810-mRNA-1 |
| chr4_1 | five_prime_UTR | 80891342 | 80891411 | 80891342 | ID=Msa0576810-mRNA-1:five_prime_utr;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80891412 | 80891591 | 80891412 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80892322 | 80892423 | 80892322 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80892495 | 80892719 | 80892495 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80892840 | 80892922 | 80892840 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80893034 | 80893137 | 80893034 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80893387 | 80893462 | 80893387 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80893596 | 80893750 | 80893596 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80893928 | 80894064 | 80893928 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80894158 | 80894270 | 80894158 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| chr4_1 | CDS | 80895646 | 80895940 | 80895646 | ID=Msa0576810-mRNA-1:cds;Parent=Msa0576810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
