Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577250 | XP_013446571.2 | 96.537 | 231 | 8 | 0 | 1 | 231 | 1 | 231 | 1.80e-164 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577250 | sp|Q9FYF7|Y1736_ARATH | 52.542 | 236 | 95 | 2 | 7 | 225 | 1 | 236 | 2.08e-80 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577250 | A0A396GN58 | 96.537 | 231 | 8 | 0 | 1 | 231 | 1 | 231 | 8.62e-165 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0577250 | Msa1085480 | 0.806446 | 8.194716e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577250 | MtrunA17_Chr8g0377351 | 96.537 | 231 | 8 | 0 | 1 | 231 | 1 | 231 | 1.66e-168 | 463 |
| Msa0577250 | MtrunA17_Chr3g0122531 | 63.366 | 202 | 68 | 1 | 14 | 215 | 23 | 218 | 3.50e-93 | 272 |
| Msa0577250 | MtrunA17_Chr3g0122501 | 66.176 | 204 | 69 | 0 | 12 | 215 | 8 | 211 | 1.66e-90 | 265 |
| Msa0577250 | MtrunA17_Chr2g0282081 | 42.308 | 208 | 109 | 3 | 7 | 210 | 11 | 211 | 1.60e-49 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577250 | AT1G67360.1 | 52.542 | 236 | 95 | 2 | 7 | 225 | 1 | 236 | 2.11e-81 | 243 |
| Msa0577250 | AT1G67360.2 | 52.542 | 236 | 95 | 2 | 7 | 225 | 1 | 236 | 2.11e-81 | 243 |
| Msa0577250 | AT2G47780.1 | 36.792 | 212 | 117 | 2 | 10 | 216 | 34 | 233 | 5.36e-44 | 148 |
| Msa0577250 | AT3G05500.1 | 35.874 | 223 | 122 | 3 | 6 | 210 | 11 | 230 | 1.72e-39 | 137 |
| Msa0577250 | AT3G05500.2 | 31.973 | 147 | 79 | 3 | 84 | 212 | 17 | 160 | 6.71e-14 | 67.8 |
Find 59 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAACAAATTGTGCTTAC+TGG | 0.274507 | 4_1:+81481203 | Msa0577250:CDS |
| GTCAGTTGTTACTGGTTATA+AGG | 0.285330 | 4_1:-81479489 | None:intergenic |
| CATGTTGTTAAGGACATTAC+TGG | 0.302136 | 4_1:+81481326 | Msa0577250:CDS |
| TGATATATAGAGGTGGAAAT+TGG | 0.330039 | 4_1:-81479446 | None:intergenic |
| CTTCATATTTAACTCAGAAT+TGG | 0.356325 | 4_1:-81481629 | None:intergenic |
| GGCTTGAATTTGTTGTAAAC+AGG | 0.366243 | 4_1:-81479824 | None:intergenic |
| TTCTCCTTGTTTAAATGCCT+TGG | 0.368309 | 4_1:-81481402 | None:intergenic |
| ATTGCTTCCTTTCTTTGTGT+TGG | 0.371695 | 4_1:-81479528 | None:intergenic |
| GCCTTGGCTATTTCATCAAT+AGG | 0.399337 | 4_1:-81481386 | None:intergenic |
| AGCATGCTCTTCAAATTTGT+TGG | 0.400161 | 4_1:-81481048 | None:intergenic |
| GGAAAGGGATACACACTGTT+TGG | 0.405678 | 4_1:+81481347 | Msa0577250:CDS |
| GCTACTTGCTTTACAAAAGT+AGG | 0.431966 | 4_1:-81481071 | None:intergenic |
| GCAATGTAAATTAACCTGTT+TGG | 0.450709 | 4_1:-81479559 | None:intergenic |
| TCTGCTGTTGGAACCGTTGA+AGG | 0.466059 | 4_1:+81479779 | Msa0577250:CDS |
| CATGCAAACAAAAGCATGAA+TGG | 0.471915 | 4_1:-81479711 | None:intergenic |
| GGTACTGTCACTACCGTTCT+CGG | 0.474596 | 4_1:+81479800 | Msa0577250:CDS |
| AGCAATGACCACCACCAAAC+AGG | 0.475167 | 4_1:+81479545 | Msa0577250:exon |
| AAAGTACAACCATGTTGTTA+AGG | 0.476497 | 4_1:+81481316 | Msa0577250:CDS |
| ATCTCTGCCACTGCATGGAA+TGG | 0.477336 | 4_1:-81481263 | None:intergenic |
| AGAGGGTGTGTAGGTATGAA+TGG | 0.483484 | 4_1:+81481533 | Msa0577250:three_prime_UTR |
| GTTAAGGACATTACTGGAAA+GGG | 0.490360 | 4_1:+81481332 | Msa0577250:CDS |
| TTACTGGTTCAGTAAAACTA+TGG | 0.505586 | 4_1:+81481219 | Msa0577250:CDS |
| TCTGACCAATGTGCAGCTGT+TGG | 0.505736 | 4_1:-81481293 | None:intergenic |
| GTATTTCAAGATTAATACAT+TGG | 0.512224 | 4_1:+81479393 | Msa0577250:five_prime_UTR |
| ATAAGCTCCAACACAAAGAA+AGG | 0.515995 | 4_1:+81479521 | Msa0577250:five_prime_UTR |
| GTAGTGAATGAGGCTCAATC+TGG | 0.522526 | 4_1:+81481143 | Msa0577250:CDS |
| CAGTAATGTCCTTAACAACA+TGG | 0.527456 | 4_1:-81481325 | None:intergenic |
| CTGCATGGAATGGTGGATAG+TGG | 0.531144 | 4_1:-81481253 | None:intergenic |
| GAAAGATGTAGAGGGTGTGT+AGG | 0.535625 | 4_1:+81481524 | Msa0577250:three_prime_UTR |
| ACAAGGAGATCTTGAGGGAG+AGG | 0.537297 | 4_1:-81479845 | None:intergenic |
| GGTTCAGTAAAACTATGGTC+AGG | 0.550734 | 4_1:+81481224 | Msa0577250:CDS |
| TGTTAAGGACATTACTGGAA+AGG | 0.554932 | 4_1:+81481331 | Msa0577250:CDS |
| GGTTGGAATGTGATATATAG+AGG | 0.555538 | 4_1:-81479456 | None:intergenic |
| CTGCCATCTCTGCCACTGCA+TGG | 0.558864 | 4_1:-81481268 | None:intergenic |
| ATTTCATCAATAGGAATCAA+AGG | 0.562762 | 4_1:-81481377 | None:intergenic |
| GGACCTTTGAGATCTGCTGT+TGG | 0.562878 | 4_1:+81479767 | Msa0577250:CDS |
| CTTAATATTAACAAAGTCTG+TGG | 0.564554 | 4_1:+81481589 | Msa0577250:three_prime_UTR |
| AGCTGAGAAAGTAGTGAATG+AGG | 0.565885 | 4_1:+81481133 | Msa0577250:CDS |
| GTGAATGAGGCTCAATCTGG+TGG | 0.567744 | 4_1:+81481146 | Msa0577250:CDS |
| TAAATTAACCTGTTTGGTGG+TGG | 0.568028 | 4_1:-81479553 | None:intergenic |
| ATTCCATGCAGTGGCAGAGA+TGG | 0.580335 | 4_1:+81481265 | Msa0577250:CDS |
| GACTATGCAAAACAAAACTC+AGG | 0.593057 | 4_1:+81479746 | Msa0577250:CDS |
| TGAATGAGGCTCAATCTGGT+GGG | 0.595217 | 4_1:+81481147 | Msa0577250:CDS |
| TCCTATTGATGAAATAGCCA+AGG | 0.598392 | 4_1:+81481385 | Msa0577250:CDS |
| TCTGCCACTGCATGGAATGG+TGG | 0.601951 | 4_1:-81481260 | None:intergenic |
| TATAAGGAGGAAGACACGGT+TGG | 0.602968 | 4_1:-81479473 | None:intergenic |
| ATGTAAATTAACCTGTTTGG+TGG | 0.604313 | 4_1:-81479556 | None:intergenic |
| TGTGGTTGAGAAAGATGTAG+AGG | 0.620908 | 4_1:+81481515 | Msa0577250:three_prime_UTR |
| GTTGTAAACAGGACCGAGAA+CGG | 0.624373 | 4_1:-81479813 | None:intergenic |
| AGTTGTTACTGGTTATAAGG+AGG | 0.626311 | 4_1:-81479486 | None:intergenic |
| GTGGTTGAGAAAGATGTAGA+GGG | 0.627221 | 4_1:+81481516 | Msa0577250:three_prime_UTR |
| GAATGAGGCTCAATCTGGTG+GGG | 0.628989 | 4_1:+81481148 | Msa0577250:CDS |
| GGTAGTGACAGTACCTTCAA+CGG | 0.634484 | 4_1:-81479792 | None:intergenic |
| GTTCCAACAGCAGATCTCAA+AGG | 0.634905 | 4_1:-81479770 | None:intergenic |
| TGGTTATAAGGAGGAAGACA+CGG | 0.638047 | 4_1:-81479477 | None:intergenic |
| CAGTTCCAACAGCTGCACAT+TGG | 0.652988 | 4_1:+81481288 | Msa0577250:CDS |
| CTATCCACCATTCCATGCAG+TGG | 0.660116 | 4_1:+81481256 | Msa0577250:CDS |
| TGGAATGTGATATATAGAGG+TGG | 0.662527 | 4_1:-81479453 | None:intergenic |
| ATAGCCAAGGCATTTAAACA+AGG | 0.669331 | 4_1:+81481398 | Msa0577250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTATTCTGATTTT+TGG | + | chr4_1:81480111-81480130 | Msa0577250:intron | 15.0% |
| !! | TATTGAATACATAATGTATT+TGG | - | chr4_1:81480238-81480257 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAATTTACTTTTT+AGG | - | chr4_1:81480263-81480282 | None:intergenic | 15.0% |
| !!! | TAGTTTTGTTAAAAATTCTA+TGG | + | chr4_1:81480384-81480403 | Msa0577250:intron | 15.0% |
| !! | TATAAAGCAAAAACAAAAAT+TGG | + | chr4_1:81480689-81480708 | Msa0577250:intron | 15.0% |
| !! | GTATTTCAAGATTAATACAT+TGG | + | chr4_1:81479393-81479412 | Msa0577250:five_prime_UTR | 20.0% |
| !! | AACAAAAAAGCAATGAAATA+GGG | - | chr4_1:81479420-81479439 | None:intergenic | 20.0% |
| !! | AAACAAAAAAGCAATGAAAT+AGG | - | chr4_1:81479421-81479440 | None:intergenic | 20.0% |
| !! | TTATGAAAATTCTCAACAAA+AGG | + | chr4_1:81479921-81479940 | Msa0577250:intron | 20.0% |
| !! | AATAGAAACACAAATTATGA+AGG | - | chr4_1:81479948-81479967 | None:intergenic | 20.0% |
| !! | TGATCATTTGTAATTGAATT+CGG | + | chr4_1:81479985-81480004 | Msa0577250:intron | 20.0% |
| !!! | TTTTTTCTTATAAATGTGAC+CGG | - | chr4_1:81480164-81480183 | None:intergenic | 20.0% |
| !! | CATTCAATACTTAATGTATT+TGG | + | chr4_1:81480200-81480219 | Msa0577250:intron | 20.0% |
| !! | ATTCAATCAAAGAGAATAAA+AGG | - | chr4_1:81480425-81480444 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTACAAACTCAT+TGG | + | chr4_1:81480734-81480753 | Msa0577250:intron | 20.0% |
| !!! | TTTTTTTGTACAAACTCATT+GGG | + | chr4_1:81480735-81480754 | Msa0577250:intron | 20.0% |
| !! | CATAAAACAACACTTATTAA+TGG | - | chr4_1:81480965-81480984 | None:intergenic | 20.0% |
| ! | ACAAAAAAGCAATGAAATAG+GGG | - | chr4_1:81479419-81479438 | None:intergenic | 25.0% |
| ! | ATATATTGAATTTGTGCAGA+TGG | + | chr4_1:81479631-81479650 | Msa0577250:intron | 25.0% |
| !! | TTTATATCTAAAAGTGCGTT+GGG | - | chr4_1:81480675-81480694 | None:intergenic | 25.0% |
| ! | ATTTCATCAATAGGAATCAA+AGG | - | chr4_1:81481380-81481399 | None:intergenic | 25.0% |
| ! | CTTAATATTAACAAAGTCTG+TGG | + | chr4_1:81481589-81481608 | Msa0577250:three_prime_UTR | 25.0% |
| ! | CTTCATATTTAACTCAGAAT+TGG | - | chr4_1:81481632-81481651 | None:intergenic | 25.0% |
| TGATATATAGAGGTGGAAAT+TGG | - | chr4_1:81479449-81479468 | None:intergenic | 30.0% | |
| ATGTAAATTAACCTGTTTGG+TGG | - | chr4_1:81479559-81479578 | None:intergenic | 30.0% | |
| GCAATGTAAATTAACCTGTT+TGG | - | chr4_1:81479562-81479581 | None:intergenic | 30.0% | |
| AAAAAACAAGGAGATCTTGA+GGG | - | chr4_1:81479853-81479872 | None:intergenic | 30.0% | |
| AAAAAAACAAGGAGATCTTG+AGG | - | chr4_1:81479854-81479873 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCCCTGATATTCA+TGG | - | chr4_1:81480035-81480054 | None:intergenic | 30.0% |
| AGGTTCATGTATACAAAAAG+AGG | - | chr4_1:81480061-81480080 | None:intergenic | 30.0% | |
| TATAGATGCATGCAAATAAC+AGG | - | chr4_1:81480081-81480100 | None:intergenic | 30.0% | |
| AACTTATTAGTTACTCCCTT+CGG | - | chr4_1:81480295-81480314 | None:intergenic | 30.0% | |
| TCTTTGATTGAATGCATGTT+TGG | + | chr4_1:81480432-81480451 | Msa0577250:intron | 30.0% | |
| !! | TCACCACAATGATTTTGAAA+AGG | + | chr4_1:81480486-81480505 | Msa0577250:intron | 30.0% |
| ! | TAGCCTTTTCAAAATCATTG+TGG | - | chr4_1:81480492-81480511 | None:intergenic | 30.0% |
| !! | AAGTGTTGTCAGATTTTCAA+AGG | - | chr4_1:81480525-81480544 | None:intergenic | 30.0% |
| TTTGAAAATCTGACAACACT+TGG | + | chr4_1:81480524-81480543 | Msa0577250:intron | 30.0% | |
| TTGAAAATCTGACAACACTT+GGG | + | chr4_1:81480525-81480544 | Msa0577250:intron | 30.0% | |
| TTGTGATGTCAATGTCATAT+TGG | + | chr4_1:81480553-81480572 | Msa0577250:intron | 30.0% | |
| TGGGAAATTACATACATGTT+TGG | - | chr4_1:81480656-81480675 | None:intergenic | 30.0% | |
| ! | CTTTATATCTAAAAGTGCGT+TGG | - | chr4_1:81480676-81480695 | None:intergenic | 30.0% |
| TTCAACATCTTATCGTTGAT+AGG | - | chr4_1:81480853-81480872 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTATGATTGTGAC+AGG | + | chr4_1:81481013-81481032 | Msa0577250:intron | 30.0% |
| TCTAAACAAATTGTGCTTAC+TGG | + | chr4_1:81481203-81481222 | Msa0577250:CDS | 30.0% | |
| !! | TTACTGGTTCAGTAAAACTA+TGG | + | chr4_1:81481219-81481238 | Msa0577250:CDS | 30.0% |
| AAAGTACAACCATGTTGTTA+AGG | + | chr4_1:81481316-81481335 | Msa0577250:CDS | 30.0% | |
| !! | GCTATTTTCTTCACATAATG+TGG | + | chr4_1:81481497-81481516 | Msa0577250:three_prime_UTR | 30.0% |
| TGGAATGTGATATATAGAGG+TGG | - | chr4_1:81479456-81479475 | None:intergenic | 35.0% | |
| GGTTGGAATGTGATATATAG+AGG | - | chr4_1:81479459-81479478 | None:intergenic | 35.0% | |
| ! | AGTTGTTACTGGTTATAAGG+AGG | - | chr4_1:81479489-81479508 | None:intergenic | 35.0% |
| ! | GTCAGTTGTTACTGGTTATA+AGG | - | chr4_1:81479492-81479511 | None:intergenic | 35.0% |
| ! | TTTTTCTCGTCAGTTGTTAC+TGG | - | chr4_1:81479500-81479519 | None:intergenic | 35.0% |
| ATAAGCTCCAACACAAAGAA+AGG | + | chr4_1:81479521-81479540 | Msa0577250:five_prime_UTR | 35.0% | |
| ATTGCTTCCTTTCTTTGTGT+TGG | - | chr4_1:81479531-81479550 | None:intergenic | 35.0% | |
| ! | TAAATTAACCTGTTTGGTGG+TGG | - | chr4_1:81479556-81479575 | None:intergenic | 35.0% |
| ! | CATGAAAAACTGAAGCATCT+TGG | + | chr4_1:81479671-81479690 | Msa0577250:CDS | 35.0% |
| ! | CATGCAAACAAAAGCATGAA+TGG | - | chr4_1:81479714-81479733 | None:intergenic | 35.0% |
| GACTATGCAAAACAAAACTC+AGG | + | chr4_1:81479746-81479765 | Msa0577250:CDS | 35.0% | |
| !! | GGCTTGAATTTGTTGTAAAC+AGG | - | chr4_1:81479827-81479846 | None:intergenic | 35.0% |
| ! | CCTTGTTGTCGAAAAAAACA+AGG | - | chr4_1:81479865-81479884 | None:intergenic | 35.0% |
| !!! | CCTTGTTTTTTTCGACAACA+AGG | + | chr4_1:81479862-81479881 | Msa0577250:CDS | 35.0% |
| TTCTTATAAATGTGACCGGA+GGG | - | chr4_1:81480160-81480179 | None:intergenic | 35.0% | |
| TTTCTTATAAATGTGACCGG+AGG | - | chr4_1:81480161-81480180 | None:intergenic | 35.0% | |
| TTGCTTATAAATGTGACCGA+AGG | + | chr4_1:81480276-81480295 | Msa0577250:intron | 35.0% | |
| TGCTTATAAATGTGACCGAA+GGG | + | chr4_1:81480277-81480296 | Msa0577250:intron | 35.0% | |
| TGAATGCATGTTTGGTATCA+CGG | + | chr4_1:81480440-81480459 | Msa0577250:intron | 35.0% | |
| ATTTGTTTGTCAAAACCACG+CGG | - | chr4_1:81480626-81480645 | None:intergenic | 35.0% | |
| ATTCTCAATGAGTTAGGTGT+GGG | - | chr4_1:81480801-81480820 | None:intergenic | 35.0% | |
| AATTCTCAATGAGTTAGGTG+TGG | - | chr4_1:81480802-81480821 | None:intergenic | 35.0% | |
| ACCTAACTCATTGAGAATTG+AGG | + | chr4_1:81480803-81480822 | Msa0577250:intron | 35.0% | |
| ! | TGTTTTATGATTGTGACAGG+TGG | + | chr4_1:81481016-81481035 | Msa0577250:intron | 35.0% |
| AGCATGCTCTTCAAATTTGT+TGG | - | chr4_1:81481051-81481070 | None:intergenic | 35.0% | |
| GCTACTTGCTTTACAAAAGT+AGG | - | chr4_1:81481074-81481093 | None:intergenic | 35.0% | |
| CAGTAATGTCCTTAACAACA+TGG | - | chr4_1:81481328-81481347 | None:intergenic | 35.0% | |
| CATGTTGTTAAGGACATTAC+TGG | + | chr4_1:81481326-81481345 | Msa0577250:CDS | 35.0% | |
| TGTTAAGGACATTACTGGAA+AGG | + | chr4_1:81481331-81481350 | Msa0577250:CDS | 35.0% | |
| GTTAAGGACATTACTGGAAA+GGG | + | chr4_1:81481332-81481351 | Msa0577250:CDS | 35.0% | |
| TCCTATTGATGAAATAGCCA+AGG | + | chr4_1:81481385-81481404 | Msa0577250:CDS | 35.0% | |
| ! | ATAGCCAAGGCATTTAAACA+AGG | + | chr4_1:81481398-81481417 | Msa0577250:CDS | 35.0% |
| ! | TTCTCCTTGTTTAAATGCCT+TGG | - | chr4_1:81481405-81481424 | None:intergenic | 35.0% |
| TGGTTATAAGGAGGAAGACA+CGG | - | chr4_1:81479480-81479499 | None:intergenic | 40.0% | |
| TACGTTCTGCCATGAATATC+AGG | + | chr4_1:81480023-81480042 | Msa0577250:intron | 40.0% | |
| ACGTTCTGCCATGAATATCA+GGG | + | chr4_1:81480024-81480043 | Msa0577250:intron | 40.0% | |
| ATAAGAACATGTACTCCCTC+CGG | + | chr4_1:81480142-81480161 | Msa0577250:intron | 40.0% | |
| TGCATGCATGTCAAGTTTCA+AGG | - | chr4_1:81480337-81480356 | None:intergenic | 40.0% | |
| !! | GATTTTCAAGGACAGCACTT+GGG | - | chr4_1:81480592-81480611 | None:intergenic | 40.0% |
| !! | TGATTTTCAAGGACAGCACT+TGG | - | chr4_1:81480593-81480612 | None:intergenic | 40.0% |
| AGTGCTGTCCTTGAAAATCA+CGG | + | chr4_1:81480593-81480612 | Msa0577250:intron | 40.0% | |
| GCCTCAATTCTCAATGAGTT+AGG | - | chr4_1:81480807-81480826 | None:intergenic | 40.0% | |
| ! | CAAACTGCAGTTGGTACATA+TGG | - | chr4_1:81480919-81480938 | None:intergenic | 40.0% |
| ATGTACCAACTGCAGTTTGT+TGG | + | chr4_1:81480920-81480939 | Msa0577250:intron | 40.0% | |
| TATCACCAACAAACTGCAGT+TGG | - | chr4_1:81480928-81480947 | None:intergenic | 40.0% | |
| AGCTGAGAAAGTAGTGAATG+AGG | + | chr4_1:81481133-81481152 | Msa0577250:CDS | 40.0% | |
| GGTTCAGTAAAACTATGGTC+AGG | + | chr4_1:81481224-81481243 | Msa0577250:CDS | 40.0% | |
| ! | GCCTTGGCTATTTCATCAAT+AGG | - | chr4_1:81481389-81481408 | None:intergenic | 40.0% |
| TGTGGTTGAGAAAGATGTAG+AGG | + | chr4_1:81481515-81481534 | Msa0577250:three_prime_UTR | 40.0% | |
| GTGGTTGAGAAAGATGTAGA+GGG | + | chr4_1:81481516-81481535 | Msa0577250:three_prime_UTR | 40.0% | |
| TATAAGGAGGAAGACACGGT+TGG | - | chr4_1:81479476-81479495 | None:intergenic | 45.0% | |
| GTTCCAACAGCAGATCTCAA+AGG | - | chr4_1:81479773-81479792 | None:intergenic | 45.0% | |
| GGTAGTGACAGTACCTTCAA+CGG | - | chr4_1:81479795-81479814 | None:intergenic | 45.0% | |
| GTTGTAAACAGGACCGAGAA+CGG | - | chr4_1:81479816-81479835 | None:intergenic | 45.0% | |
| AGCACTTGGGTGACATTGTA+GGG | - | chr4_1:81480579-81480598 | None:intergenic | 45.0% | |
| ! | GTGAGTCACCGTGATTTTCA+AGG | - | chr4_1:81480604-81480623 | None:intergenic | 45.0% |
| TCAATGAGTTAGGTGTGGGA+TGG | - | chr4_1:81480797-81480816 | None:intergenic | 45.0% | |
| ! | CTGCAGTTGGTACATATGGT+TGG | - | chr4_1:81480915-81480934 | None:intergenic | 45.0% |
| GTAGTGAATGAGGCTCAATC+TGG | + | chr4_1:81481143-81481162 | Msa0577250:CDS | 45.0% | |
| TGAATGAGGCTCAATCTGGT+GGG | + | chr4_1:81481147-81481166 | Msa0577250:CDS | 45.0% | |
| GGAAAGGGATACACACTGTT+TGG | + | chr4_1:81481347-81481366 | Msa0577250:CDS | 45.0% | |
| ! | GAAAGATGTAGAGGGTGTGT+AGG | + | chr4_1:81481524-81481543 | Msa0577250:three_prime_UTR | 45.0% |
| ! | AGAGGGTGTGTAGGTATGAA+TGG | + | chr4_1:81481533-81481552 | Msa0577250:three_prime_UTR | 45.0% |
| AGCAATGACCACCACCAAAC+AGG | + | chr4_1:81479545-81479564 | Msa0577250:exon | 50.0% | |
| !! | GGACCTTTGAGATCTGCTGT+TGG | + | chr4_1:81479767-81479786 | Msa0577250:CDS | 50.0% |
| TCTGCTGTTGGAACCGTTGA+AGG | + | chr4_1:81479779-81479798 | Msa0577250:CDS | 50.0% | |
| GGTACTGTCACTACCGTTCT+CGG | + | chr4_1:81479800-81479819 | Msa0577250:CDS | 50.0% | |
| ACAAGGAGATCTTGAGGGAG+AGG | - | chr4_1:81479848-81479867 | None:intergenic | 50.0% | |
| CAGCACTTGGGTGACATTGT+AGG | - | chr4_1:81480580-81480599 | None:intergenic | 50.0% | |
| TGAGTTAGGTGTGGGATGGT+AGG | - | chr4_1:81480793-81480812 | None:intergenic | 50.0% | |
| GTTCACATGCGACGTGACTT+GGG | - | chr4_1:81480882-81480901 | None:intergenic | 50.0% | |
| CAAGTCACGTCGCATGTGAA+CGG | + | chr4_1:81480881-81480900 | Msa0577250:intron | 50.0% | |
| GTGAATGAGGCTCAATCTGG+TGG | + | chr4_1:81481146-81481165 | Msa0577250:CDS | 50.0% | |
| GAATGAGGCTCAATCTGGTG+GGG | + | chr4_1:81481148-81481167 | Msa0577250:CDS | 50.0% | |
| !! | CTGCATGGAATGGTGGATAG+TGG | - | chr4_1:81481256-81481275 | None:intergenic | 50.0% |
| CTATCCACCATTCCATGCAG+TGG | + | chr4_1:81481256-81481275 | Msa0577250:CDS | 50.0% | |
| ATCTCTGCCACTGCATGGAA+TGG | - | chr4_1:81481266-81481285 | None:intergenic | 50.0% | |
| ATTCCATGCAGTGGCAGAGA+TGG | + | chr4_1:81481265-81481284 | Msa0577250:CDS | 50.0% | |
| CAGTTCCAACAGCTGCACAT+TGG | + | chr4_1:81481288-81481307 | Msa0577250:CDS | 50.0% | |
| TCTGACCAATGTGCAGCTGT+TGG | - | chr4_1:81481296-81481315 | None:intergenic | 50.0% | |
| CGTTCACATGCGACGTGACT+TGG | - | chr4_1:81480883-81480902 | None:intergenic | 55.0% | |
| TCTGCCACTGCATGGAATGG+TGG | - | chr4_1:81481263-81481282 | None:intergenic | 55.0% | |
| AATCACGGTGACTCACCGCG+TGG | + | chr4_1:81480608-81480627 | Msa0577250:intron | 60.0% | |
| CTGCCATCTCTGCCACTGCA+TGG | - | chr4_1:81481271-81481290 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81479343 | 81481668 | 81479343 | ID=Msa0577250;Name=Msa0577250 |
| chr4_1 | mRNA | 81479343 | 81481668 | 81479343 | ID=Msa0577250-mRNA-1;Parent=Msa0577250;Name=Msa0577250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=206|1|1|1|1|1|3|190|231 |
| chr4_1 | exon | 81479343 | 81479566 | 81479343 | ID=Msa0577250-mRNA-1:exon:29336;Parent=Msa0577250-mRNA-1 |
| chr4_1 | exon | 81479650 | 81479883 | 81479650 | ID=Msa0577250-mRNA-1:exon:29337;Parent=Msa0577250-mRNA-1 |
| chr4_1 | exon | 81481035 | 81481668 | 81481035 | ID=Msa0577250-mRNA-1:exon:29338;Parent=Msa0577250-mRNA-1 |
| chr4_1 | five_prime_UTR | 81479343 | 81479548 | 81479343 | ID=Msa0577250-mRNA-1:five_prime_utr;Parent=Msa0577250-mRNA-1 |
| chr4_1 | CDS | 81479549 | 81479566 | 81479549 | ID=Msa0577250-mRNA-1:cds;Parent=Msa0577250-mRNA-1 |
| chr4_1 | CDS | 81479650 | 81479883 | 81479650 | ID=Msa0577250-mRNA-1:cds;Parent=Msa0577250-mRNA-1 |
| chr4_1 | CDS | 81481035 | 81481478 | 81481035 | ID=Msa0577250-mRNA-1:cds;Parent=Msa0577250-mRNA-1 |
| chr4_1 | three_prime_UTR | 81481479 | 81481668 | 81481479 | ID=Msa0577250-mRNA-1:three_prime_utr;Parent=Msa0577250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
