AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCACAAAAGATTAATT+AGG 0.225764 4_1:+81798757 Msa0577430:five_prime_UTR
GATTGGGCTTGACCCAATTC+TGG 0.260098 4_1:-81798418 None:intergenic
TAAATTGAAATGTGATTTGT+AGG 0.278161 4_1:+81803330 Msa0577430:three_prime_UTR
TGCATTATGTGTATTCATAT+TGG 0.298462 4_1:+81803868 Msa0577430:three_prime_UTR
TCCCTCTTACAATCCAGAAT+TGG 0.308921 4_1:+81798405 Msa0577430:five_prime_UTR
GGTGGTGGGCGACAATATGC+TGG 0.319318 4_1:-81798546 None:intergenic
TGCAATTTGATTTGGGAGAT+TGG 0.321361 4_1:-81798435 None:intergenic
TCTTCACAAAAGATTAATTA+GGG 0.328066 4_1:+81798758 Msa0577430:five_prime_UTR
CTCTGCTTCTTTCTTCTCAA+AGG 0.336349 4_1:+81798828 Msa0577430:CDS
GGTGGTGGTGGCGGCTGTTG+AGG 0.337873 4_1:-81798522 None:intergenic
ATAGAGGCTGCAATTTGATT+TGG 0.338276 4_1:-81798443 None:intergenic
AAAATCAAATCATAATGATT+TGG 0.341309 4_1:-81803653 None:intergenic
GCAATTTGATTTGGGAGATT+GGG 0.342462 4_1:-81798434 None:intergenic
GTACCTGCACAGCTGCTATA+AGG 0.358307 4_1:-81799917 None:intergenic
TTCAGAATAGGAGAAATGAT+TGG 0.359612 4_1:-81798472 None:intergenic
TAGAGGCTGCAATTTGATTT+GGG 0.360406 4_1:-81798442 None:intergenic
CTCTTCTGCTGCAGAGGTAA+TGG 0.366578 4_1:-81802303 None:intergenic
TTGCCGTGTTACTTCTCTCT+TGG 0.370989 4_1:-81799761 None:intergenic
CTTGATTTCTAGATTTGAAC+TGG 0.377543 4_1:-81803698 None:intergenic
ATCCTTGCTCCTTTCATCTC+AGG 0.380089 4_1:+81798868 Msa0577430:CDS
CTATACGGCCGAGTTAAATC+AGG 0.390499 4_1:+81798802 Msa0577430:CDS
AAAGATGAAGCGCAACTGTT+AGG 0.391591 4_1:-81798497 None:intergenic
TCTTCTGCTGCAGAGGTAAT+GGG 0.406388 4_1:-81802302 None:intergenic
ACCCAATTCTGGATTGTAAG+AGG 0.409479 4_1:-81798407 None:intergenic
AAAGGAAGGAAGGAAGGAAC+GGG 0.411501 4_1:+81803223 Msa0577430:CDS
AACTGTTAGGGTTTCAGAAT+AGG 0.424600 4_1:-81798484 None:intergenic
CCCTCTTACAATCCAGAATT+GGG 0.432017 4_1:+81798406 Msa0577430:five_prime_UTR
AAGATGAAGCGCAACTGTTA+GGG 0.433277 4_1:-81798496 None:intergenic
AGAAGGAAGTGAAGAAAGAA+AGG 0.444046 4_1:+81803205 Msa0577430:CDS
TGCAAATGTTTGCTTGGATA+AGG 0.447632 4_1:+81803485 Msa0577430:three_prime_UTR
AAATAAATATGTTATCACTT+TGG 0.448043 4_1:+81803781 Msa0577430:three_prime_UTR
TTCATGTTTGCAGCATCTGC+TGG 0.450748 4_1:+81799723 Msa0577430:intron
GGAAGTGAAGAAAGAAAGGA+AGG 0.461493 4_1:+81803209 Msa0577430:CDS
GTGAAGAAAGAAAGGAAGGA+AGG 0.461493 4_1:+81803213 Msa0577430:CDS
CCCACATGCAAATGTTTGCT+TGG 0.464391 4_1:+81803479 Msa0577430:three_prime_UTR
ATCGTGGTGATGGCACTATA+CGG 0.469148 4_1:+81798787 Msa0577430:exon
TTGATGTATTTATAGAGAAT+AGG 0.470021 4_1:+81803273 Msa0577430:three_prime_UTR
AGAAAGAAAGGAAGGAAGGA+AGG 0.471348 4_1:+81803217 Msa0577430:CDS
GTGGTGGGCGACAATATGCT+GGG 0.471570 4_1:-81798545 None:intergenic
GAAAGGAAGGAAGGAAGGAA+CGG 0.477876 4_1:+81803222 Msa0577430:CDS
AGCATCTGCTGGCAATGAAC+AGG 0.479233 4_1:+81799734 Msa0577430:intron
TCAGAATAGGAGAAATGATT+GGG 0.479479 4_1:-81798471 None:intergenic
AAATGATTGGGAGTGGATAG+AGG 0.491182 4_1:-81798459 None:intergenic
TTTCAGCAAGGATTAATTGT+GGG 0.491933 4_1:+81803142 Msa0577430:CDS
TTGCCTTATAGCAGCTGTGC+AGG 0.494834 4_1:+81799914 Msa0577430:CDS
TTGCAAAGAAAACATTTGCA+TGG 0.494855 4_1:-81803455 None:intergenic
AAGAAAATCATTTGCTCACA+TGG 0.498628 4_1:-81803426 None:intergenic
GAGATCGACTGTGGTGGTGG+TGG 0.502617 4_1:-81798561 None:intergenic
CACCACAGTCGATCTCGAAC+TGG 0.504576 4_1:+81798568 Msa0577430:five_prime_UTR
TGCAAAGAAAACATTTGCAT+GGG 0.513228 4_1:-81803454 None:intergenic
GTGGGGAGTGAAGTGTTTGA+AGG 0.520645 4_1:-81798712 None:intergenic
CCAAGCAAACATTTGCATGT+GGG 0.521754 4_1:-81803479 None:intergenic
ATAGGAGAAATGATTGGGAG+TGG 0.540665 4_1:-81798466 None:intergenic
CAGAAGCTTGTTGATGAAGA+TGG 0.540780 4_1:+81803173 Msa0577430:CDS
TTTCAGCATGGATTAAGTGT+AGG 0.547125 4_1:+81803079 Msa0577430:CDS
TTCGAGATCGACTGTGGTGG+TGG 0.550489 4_1:-81798564 None:intergenic
ATCCTTCTCTTCTGCTGCAG+AGG 0.551315 4_1:-81802309 None:intergenic
CCCAATTCTGGATTGTAAGA+GGG 0.551878 4_1:-81798406 None:intergenic
GAGGGAGAGTATGCCTAAAA+CGG 0.557393 4_1:-81798388 None:intergenic
CAAGCAAACATTTGCATGTG+GGG 0.558305 4_1:-81803478 None:intergenic
TACCTCTGCAGCAGAAGAGA+AGG 0.559701 4_1:+81802307 Msa0577430:CDS
CAATAGCTTGTTGATGAAGA+TGG 0.560844 4_1:+81803110 Msa0577430:CDS
AAGGAAGGAACGGGATGTGT+TGG 0.562071 4_1:+81803232 Msa0577430:CDS
TGTATTTATAGAGAATAGGA+TGG 0.562958 4_1:+81803277 Msa0577430:three_prime_UTR
AGGGTTACGAATCGTGGTGA+TGG 0.565370 4_1:+81798777 Msa0577430:exon
TCCAAGCAAACATTTGCATG+TGG 0.566681 4_1:-81803480 None:intergenic
CAGAGAACCCTGATTTAACT+CGG 0.568629 4_1:-81798810 None:intergenic
GTTTCAGCAAGGATTAATTG+TGG 0.571825 4_1:+81803141 Msa0577430:CDS
TTAATTAGGGTTACGAATCG+TGG 0.576745 4_1:+81798771 Msa0577430:five_prime_UTR
AATGTGATTTGTAGGCACAT+AGG 0.577225 4_1:+81803338 Msa0577430:three_prime_UTR
GGTGGGCGACAATATGCTGG+GGG 0.579563 4_1:-81798543 None:intergenic
AGATCGACTGTGGTGGTGGT+GGG 0.584588 4_1:-81798560 None:intergenic
GCTTGTTGATGAAGATGGTG+GGG 0.593878 4_1:+81803115 Msa0577430:CDS
TCTAGATTTGAACTGGACAA+AGG 0.598576 4_1:-81803691 None:intergenic
AGCTTGTTGATGAAGATGGT+GGG 0.600365 4_1:+81803177 Msa0577430:CDS
GCTTGTTGATGAAGATGGTG+GGG 0.600682 4_1:+81803178 Msa0577430:CDS
TGGTGGGGATTGTTTCAGCA+AGG 0.606583 4_1:+81803130 Msa0577430:CDS
AGCTTGTTGATGAAGATGGT+GGG 0.613431 4_1:+81803114 Msa0577430:CDS
GGTTATTGACCTGAGATGAA+AGG 0.622854 4_1:-81798877 None:intergenic
GACCTGAGATGAAAGGAGCA+AGG 0.629701 4_1:-81798870 None:intergenic
TGGTGGGCGACAATATGCTG+GGG 0.638724 4_1:-81798544 None:intergenic
GAAGATGGTGGGGATTGAGA+AGG 0.638835 4_1:+81803188 Msa0577430:CDS
CAGTTCGAGATCGACTGTGG+TGG 0.645130 4_1:-81798567 None:intergenic
GGAGAGTATGCCTAAAACGG+TGG 0.652507 4_1:-81798385 None:intergenic
TACCAGTTCGAGATCGACTG+TGG 0.653203 4_1:-81798570 None:intergenic
TATACGGCCGAGTTAAATCA+GGG 0.670495 4_1:+81798803 Msa0577430:CDS
AAGCTTGTTGATGAAGATGG+TGG 0.671203 4_1:+81803176 Msa0577430:CDS
TAGCTTGTTGATGAAGATGG+TGG 0.675941 4_1:+81803113 Msa0577430:CDS
TGTCCAAGAGAGAAGTAACA+CGG 0.711867 4_1:+81799758 Msa0577430:CDS
TTTAAATAGAGAGATAGACA+AGG 0.751102 4_1:-81798621 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATAAATAAACCAA+TGG + chr4_1:81800256-81800275 Msa0577430:intron 10.0%
!! AAATAAATAAAATGATTCTA+AGG + chr4_1:81801709-81801728 Msa0577430:intron 10.0%
!!! ATTATACATATTTTTTGATT+TGG - chr4_1:81803305-81803324 None:intergenic 10.0%
!!! TTTTCAATTATTTTTTTCAA+GGG - chr4_1:81803532-81803551 None:intergenic 10.0%
!!! ATTTTCAATTATTTTTTTCA+AGG - chr4_1:81803533-81803552 None:intergenic 10.0%
!! AAAAAAGTAGATTGAATAAT+AGG + chr4_1:81798654-81798673 Msa0577430:five_prime_UTR 15.0%
!! GAATAAAAACAAGAAAATAA+AGG - chr4_1:81798942-81798961 None:intergenic 15.0%
!! ATATCTTATATGCATAAAAA+TGG - chr4_1:81799220-81799239 None:intergenic 15.0%
!!! AGATTATGTCAAATTTATTT+TGG - chr4_1:81799428-81799447 None:intergenic 15.0%
!!! AAGAAAGTAAGAAATAATTT+TGG + chr4_1:81802124-81802143 Msa0577430:intron 15.0%
!! AATATAAACTGAAAATAACT+TGG + chr4_1:81802625-81802644 Msa0577430:intron 15.0%
!! AAAATCAAATCATAATGATT+TGG - chr4_1:81803656-81803675 None:intergenic 15.0%
!!! ACATATTTATTTTTTTGTGA+GGG - chr4_1:81803773-81803792 None:intergenic 15.0%
!!! AACATATTTATTTTTTTGTG+AGG - chr4_1:81803774-81803793 None:intergenic 15.0%
!! AAATAAATATGTTATCACTT+TGG + chr4_1:81803781-81803800 Msa0577430:three_prime_UTR 15.0%
!! ATCTTCACAAAAGATTAATT+AGG + chr4_1:81798757-81798776 Msa0577430:five_prime_UTR 20.0%
!! TCTTCACAAAAGATTAATTA+GGG + chr4_1:81798758-81798777 Msa0577430:five_prime_UTR 20.0%
!! TGTCACAAATTTATCAATTT+CGG - chr4_1:81799005-81799024 None:intergenic 20.0%
!! TTTGTGACATATTGATAAAT+TGG + chr4_1:81799016-81799035 Msa0577430:intron 20.0%
!! TTGTGACATATTGATAAATT+GGG + chr4_1:81799017-81799036 Msa0577430:intron 20.0%
!! GAAAAAATAAATTCCAAATC+TGG - chr4_1:81799043-81799062 None:intergenic 20.0%
!!! TTTTATTTGATTTTCATGAG+TGG + chr4_1:81799078-81799097 Msa0577430:intron 20.0%
!! TGAATGAATCAGTAAAAATT+GGG - chr4_1:81799283-81799302 None:intergenic 20.0%
!! AAAAACTGAATTTGAGTATA+AGG - chr4_1:81799330-81799349 None:intergenic 20.0%
!! AATTCAATAAACATACTCTA+AGG - chr4_1:81799495-81799514 None:intergenic 20.0%
!! AACATTTATTAGAGAATGTT+TGG - chr4_1:81799573-81799592 None:intergenic 20.0%
!!! TGTATAAAGTACTCAAAATA+AGG - chr4_1:81799602-81799621 None:intergenic 20.0%
!!! ACATATTGTACTTCATTTTT+TGG + chr4_1:81799865-81799884 Msa0577430:intron 20.0%
!! TATTACATTCGAATCATTAT+TGG - chr4_1:81800802-81800821 None:intergenic 20.0%
!!! GAAATTGATATGTATTTTGT+AGG + chr4_1:81801159-81801178 Msa0577430:intron 20.0%
!! TTTATGGAAAGCAAAATTTA+TGG + chr4_1:81801391-81801410 Msa0577430:intron 20.0%
!!! TTTTAAAAGTTGAGAAGTTA+GGG - chr4_1:81801692-81801711 None:intergenic 20.0%
!!! ATTTTAAAAGTTGAGAAGTT+AGG - chr4_1:81801693-81801712 None:intergenic 20.0%
!!! AGGATCTTGTATTAATTTTT+TGG + chr4_1:81802327-81802346 Msa0577430:CDS 20.0%
!! ACGATTATATTAGATAGAAA+AGG - chr4_1:81802422-81802441 None:intergenic 20.0%
!! ATGATACAAGCAAAATATAT+TGG - chr4_1:81802920-81802939 None:intergenic 20.0%
!! TTGATGTATTTATAGAGAAT+AGG + chr4_1:81803273-81803292 Msa0577430:three_prime_UTR 20.0%
!!! AAGGATGTTTTTGTTTTATA+CGG + chr4_1:81803504-81803523 Msa0577430:three_prime_UTR 20.0%
! TTTAAATAGAGAGATAGACA+AGG - chr4_1:81798624-81798643 None:intergenic 25.0%
! TATGAGATTGAAATTGAGAA+GGG - chr4_1:81798902-81798921 None:intergenic 25.0%
! ATATGAGATTGAAATTGAGA+AGG - chr4_1:81798903-81798922 None:intergenic 25.0%
! AATGCATTGTAAGCATAAAA+GGG - chr4_1:81799120-81799139 None:intergenic 25.0%
! TAATGCATTGTAAGCATAAA+AGG - chr4_1:81799121-81799140 None:intergenic 25.0%
! ATGCATATAAGATATTACCA+TGG + chr4_1:81799225-81799244 Msa0577430:intron 25.0%
! GTGAATGAATCAGTAAAAAT+TGG - chr4_1:81799284-81799303 None:intergenic 25.0%
!! GAATGTTTGGAATATATTAG+AGG - chr4_1:81799560-81799579 None:intergenic 25.0%
! TTTAATTAGTCACTGAACTA+TGG + chr4_1:81799647-81799666 Msa0577430:intron 25.0%
! ATCAGCAAAATTTGAGTATT+GGG - chr4_1:81799700-81799719 None:intergenic 25.0%
! TCTTAGAGTAATAGAATAGA+TGG + chr4_1:81799803-81799822 Msa0577430:intron 25.0%
! CTTAGAGTAATAGAATAGAT+GGG + chr4_1:81799804-81799823 Msa0577430:intron 25.0%
! GGAAGAAATTCAAAAAGATT+AGG + chr4_1:81799886-81799905 Msa0577430:intron 25.0%
! AAAAATATCGTTCCTCAATA+TGG - chr4_1:81800178-81800197 None:intergenic 25.0%
! ATATAACTCCTTCTAATAGT+TGG + chr4_1:81800736-81800755 Msa0577430:intron 25.0%
! AATTCAAACCAACTATTAGA+AGG - chr4_1:81800747-81800766 None:intergenic 25.0%
! TTTGTTTAAAGAATGCATAG+TGG + chr4_1:81800765-81800784 Msa0577430:intron 25.0%
!! AATTAGCAGAGTTTAAAATG+TGG - chr4_1:81800939-81800958 None:intergenic 25.0%
! TTAACATGCATTATTATCTG+AGG + chr4_1:81800973-81800992 Msa0577430:intron 25.0%
! TAACATGCATTATTATCTGA+GGG + chr4_1:81800974-81800993 Msa0577430:intron 25.0%
!!! CTACTTTTGTGATTAGTTTA+AGG - chr4_1:81801075-81801094 None:intergenic 25.0%
! ATTTCATTGTTGCTCTATAA+GGG - chr4_1:81801144-81801163 None:intergenic 25.0%
! AATTTCATTGTTGCTCTATA+AGG - chr4_1:81801145-81801164 None:intergenic 25.0%
!! TATGTATTTTGTAGGTTAGT+AGG + chr4_1:81801167-81801186 Msa0577430:intron 25.0%
!!! AGTAGGATTTTTGACTTTTT+TGG + chr4_1:81801184-81801203 Msa0577430:intron 25.0%
! AGTACGGTAAAGTTAAAAAA+TGG - chr4_1:81801313-81801332 None:intergenic 25.0%
!! TTCCATAAATTTTCATTTGG+TGG - chr4_1:81801380-81801399 None:intergenic 25.0%
!! GCTTTCCATAAATTTTCATT+TGG - chr4_1:81801383-81801402 None:intergenic 25.0%
! CAGATTCACAAATTTCATTT+GGG - chr4_1:81801519-81801538 None:intergenic 25.0%
! TCAGATTCACAAATTTCATT+TGG - chr4_1:81801520-81801539 None:intergenic 25.0%
!!! TGATTCTAAGGTAATAGAAA+TGG + chr4_1:81801721-81801740 Msa0577430:intron 25.0%
!!! GATTCTAAGGTAATAGAAAT+GGG + chr4_1:81801722-81801741 Msa0577430:intron 25.0%
! CAATAGAATACATCAATTAC+AGG - chr4_1:81801779-81801798 None:intergenic 25.0%
! CTGTAATTGATGTATTCTAT+TGG + chr4_1:81801777-81801796 Msa0577430:intron 25.0%
! ATAGCATGATAAGAAGAAAA+AGG + chr4_1:81801928-81801947 Msa0577430:intron 25.0%
!! TTTTCAAAGAGAATAGTGTT+GGG - chr4_1:81802280-81802299 None:intergenic 25.0%
!! ATTTTCAAAGAGAATAGTGT+TGG - chr4_1:81802281-81802300 None:intergenic 25.0%
! AACAGATAAATTTAGTGACA+TGG - chr4_1:81802729-81802748 None:intergenic 25.0%
! TGTAATGAAAATGCCTAAAA+GGG - chr4_1:81802789-81802808 None:intergenic 25.0%
! TTGTAATGAAAATGCCTAAA+AGG - chr4_1:81802790-81802809 None:intergenic 25.0%
!!! ACAATTTATTTTCACTACAC+AGG - chr4_1:81802840-81802859 None:intergenic 25.0%
!! ATTTTGCTTGTATCATAAGA+AGG + chr4_1:81802924-81802943 Msa0577430:intron 25.0%
!! TTTTGCTTGTATCATAAGAA+GGG + chr4_1:81802925-81802944 Msa0577430:intron 25.0%
!!! TTTTTTAGAGAATTTCAGCA+TGG + chr4_1:81803067-81803086 Msa0577430:intron 25.0%
! TGTATTTATAGAGAATAGGA+TGG + chr4_1:81803277-81803296 Msa0577430:three_prime_UTR 25.0%
! AAAATGTGAGAAAAACAGTT+GGG + chr4_1:81803575-81803594 Msa0577430:three_prime_UTR 25.0%
! TGCATTATGTGTATTCATAT+TGG + chr4_1:81803868-81803887 Msa0577430:three_prime_UTR 25.0%
TCAGAATAGGAGAAATGATT+GGG - chr4_1:81798474-81798493 None:intergenic 30.0%
TTCAGAATAGGAGAAATGAT+TGG - chr4_1:81798475-81798494 None:intergenic 30.0%
ATGAGATTGAAATTGAGAAG+GGG - chr4_1:81798901-81798920 None:intergenic 30.0%
ATGCATTGTAAGCATAAAAG+GGG - chr4_1:81799119-81799138 None:intergenic 30.0%
TGACATTTGAAAGGAAGTAA+AGG - chr4_1:81799356-81799375 None:intergenic 30.0%
GTCACAAAATGACATTTGAA+AGG - chr4_1:81799365-81799384 None:intergenic 30.0%
!!! TTCAAATGTCATTTTGTGAC+TGG + chr4_1:81799365-81799384 Msa0577430:intron 30.0%
CATCAGCAAAATTTGAGTAT+TGG - chr4_1:81799701-81799720 None:intergenic 30.0%
! CAATACTCAAATTTTGCTGA+TGG + chr4_1:81799699-81799718 Msa0577430:intron 30.0%
! TTCTCTGTTAGTTCTTCTTT+AGG - chr4_1:81799846-81799865 None:intergenic 30.0%
! AGTCAGATCAAATATTGACT+TGG - chr4_1:81799979-81799998 None:intergenic 30.0%
TCGATTATTAGTACTTTCCT+TGG + chr4_1:81800090-81800109 Msa0577430:intron 30.0%
! AATTTAGAATTGAAGCTCCA+AGG - chr4_1:81800110-81800129 None:intergenic 30.0%
TGAAATCATGTTCCATATTG+AGG + chr4_1:81800150-81800169 Msa0577430:intron 30.0%
CATATAAATAGCTCTTGAGA+TGG + chr4_1:81800374-81800393 Msa0577430:intron 30.0%
GACATAATAAGACATGATGA+GGG - chr4_1:81800428-81800447 None:intergenic 30.0%
! TCTCTACCTAGATTTGAAAT+GGG + chr4_1:81800487-81800506 Msa0577430:intron 30.0%
TAGTAACCCATTTCAAATCT+AGG - chr4_1:81800496-81800515 None:intergenic 30.0%
GTGATAAGTGTAGAAATGAT+GGG + chr4_1:81800649-81800668 Msa0577430:intron 30.0%
AAAGATGTGTTAGATAGGAA+AGG - chr4_1:81800697-81800716 None:intergenic 30.0%
CAGAAAAAGATGTGTTAGAT+AGG - chr4_1:81800702-81800721 None:intergenic 30.0%
ATTCGAATCATTATTGGAAG+TGG - chr4_1:81800796-81800815 None:intergenic 30.0%
GAAGAAATGAGTGTATACTA+AGG - chr4_1:81801026-81801045 None:intergenic 30.0%
! ATTTTGTACTCCACAATTCA+AGG + chr4_1:81801211-81801230 Msa0577430:intron 30.0%
!! GGGGATTTTAAAAGTACATT+CGG - chr4_1:81801269-81801288 None:intergenic 30.0%
!!! TTTTAAAATCCCCCCAAATT+TGG + chr4_1:81801276-81801295 Msa0577430:intron 30.0%
CGGTAAAGTTAAAAAATGGT+TGG - chr4_1:81801309-81801328 None:intergenic 30.0%
CCATAAATTTCATGCAAGTA+CGG - chr4_1:81801329-81801348 None:intergenic 30.0%
!! CATAAATTTTCATTTGGTGG+TGG - chr4_1:81801377-81801396 None:intergenic 30.0%
CACCACCAAATGAAAATTTA+TGG + chr4_1:81801375-81801394 Msa0577430:intron 30.0%
GTACGGTAAGAAATTTCATT+TGG - chr4_1:81801453-81801472 None:intergenic 30.0%
TCACTGAATGAAATAGAATG+TGG + chr4_1:81801587-81801606 Msa0577430:intron 30.0%
!! AGAATGTGGAAATTTTGAGT+AGG + chr4_1:81801601-81801620 Msa0577430:intron 30.0%
!!! AATGCTTTTTTCTCAACTCT+TGG + chr4_1:81801661-81801680 Msa0577430:intron 30.0%
AACATAAAATTTGGCCAATG+GGG - chr4_1:81801832-81801851 None:intergenic 30.0%
CAACATAAAATTTGGCCAAT+GGG - chr4_1:81801833-81801852 None:intergenic 30.0%
! CATTGGCCAAATTTTATGTT+GGG + chr4_1:81801832-81801851 Msa0577430:intron 30.0%
GGAAAACCCAACATAAAATT+TGG - chr4_1:81801841-81801860 None:intergenic 30.0%
GCAATGAAATTCAAGGTAAA+TGG - chr4_1:81801877-81801896 None:intergenic 30.0%
! TTTTCAGTTATGCACAAGAT+TGG + chr4_1:81802067-81802086 Msa0577430:intron 30.0%
TATTTGGCTAAATTTCTGTC+TGG + chr4_1:81802216-81802235 Msa0577430:intron 30.0%
ATCTTGCTTGTTTCATAAGA+AGG + chr4_1:81802650-81802669 Msa0577430:intron 30.0%
TCTTGCTTGTTTCATAAGAA+GGG + chr4_1:81802651-81802670 Msa0577430:intron 30.0%
AATCTTGTTAACATCTCTGA+CGG + chr4_1:81802808-81802827 Msa0577430:intron 30.0%
TTTGCTTGTATCATAAGAAG+GGG + chr4_1:81802926-81802945 Msa0577430:intron 30.0%
! CATTTCTTTGTTGATGAAGA+TGG + chr4_1:81803002-81803021 Msa0577430:intron 30.0%
TTTCAGCAAGGATTAATTGT+GGG + chr4_1:81803034-81803053 Msa0577430:intron 30.0%
!! ACATCAAGCATTTTGATCAT+TGG - chr4_1:81803260-81803279 None:intergenic 30.0%
AAGAAAATCATTTGCTCACA+TGG - chr4_1:81803429-81803448 None:intergenic 30.0%
TGCAAAGAAAACATTTGCAT+GGG - chr4_1:81803457-81803476 None:intergenic 30.0%
TTGCAAAGAAAACATTTGCA+TGG - chr4_1:81803458-81803477 None:intergenic 30.0%
CAAAATGTGAGAAAAACAGT+TGG + chr4_1:81803574-81803593 Msa0577430:three_prime_UTR 30.0%
AGAAAAACAGTTGGGATTTA+GGG + chr4_1:81803583-81803602 Msa0577430:three_prime_UTR 30.0%
! CTTGATTTCTAGATTTGAAC+TGG - chr4_1:81803701-81803720 None:intergenic 30.0%
!! GCAATTTGATTTGGGAGATT+GGG - chr4_1:81798437-81798456 None:intergenic 35.0%
!! TGCAATTTGATTTGGGAGAT+TGG - chr4_1:81798438-81798457 None:intergenic 35.0%
! TAGAGGCTGCAATTTGATTT+GGG - chr4_1:81798445-81798464 None:intergenic 35.0%
ATAGAGGCTGCAATTTGATT+TGG - chr4_1:81798446-81798465 None:intergenic 35.0%
AACTGTTAGGGTTTCAGAAT+AGG - chr4_1:81798487-81798506 None:intergenic 35.0%
! AGATTCTGCGTTTTCTGTTT+GGG - chr4_1:81798741-81798760 None:intergenic 35.0%
! AAGATTCTGCGTTTTCTGTT+TGG - chr4_1:81798742-81798761 None:intergenic 35.0%
TTAATTAGGGTTACGAATCG+TGG + chr4_1:81798771-81798790 Msa0577430:five_prime_UTR 35.0%
TCACTGTTAGATGAACTCAT+AGG + chr4_1:81798969-81798988 Msa0577430:intron 35.0%
TTGATAAATTGGGCCAGATT+TGG + chr4_1:81799027-81799046 Msa0577430:intron 35.0%
! TTACAGAAGCATGTGAACAA+AGG + chr4_1:81799455-81799474 Msa0577430:intron 35.0%
CTCAATATGGTTCCTCAATA+TGG - chr4_1:81800165-81800184 None:intergenic 35.0%
CATATTGAGGAACCATATTG+AGG + chr4_1:81800163-81800182 Msa0577430:intron 35.0%
! AGCTTTTGAACAAAAGCCAT+TGG - chr4_1:81800275-81800294 None:intergenic 35.0%
TAAGACATGATGAGGGTTAT+GGG - chr4_1:81800421-81800440 None:intergenic 35.0%
ATAAGACATGATGAGGGTTA+TGG - chr4_1:81800422-81800441 None:intergenic 35.0%
CGACATAATAAGACATGATG+AGG - chr4_1:81800429-81800448 None:intergenic 35.0%
CTCTCTACCTAGATTTGAAA+TGG + chr4_1:81800486-81800505 Msa0577430:intron 35.0%
TGAACACTCATGAAATGAGA+TGG + chr4_1:81800538-81800557 Msa0577430:intron 35.0%
ACTCATGAAATGAGATGGAA+GGG + chr4_1:81800543-81800562 Msa0577430:intron 35.0%
AAGGTTCTTCCTATTCTTCA+AGG + chr4_1:81800568-81800587 Msa0577430:intron 35.0%
AAAGCTACTCCTTGAAGAAT+AGG - chr4_1:81800580-81800599 None:intergenic 35.0%
GAAGAAGCAATAGTTATGCA+AGG + chr4_1:81800623-81800642 Msa0577430:intron 35.0%
AAGCAATAGTTATGCAAGGA+AGG + chr4_1:81800627-81800646 Msa0577430:intron 35.0%
GGTGATAAGTGTAGAAATGA+TGG + chr4_1:81800648-81800667 Msa0577430:intron 35.0%
TTTATTCCTCTGTCTGAATC+TGG + chr4_1:81800893-81800912 Msa0577430:intron 35.0%
TATTATCCAGATTCAGACAG+AGG - chr4_1:81800902-81800921 None:intergenic 35.0%
ATGGTAAAAGCCTTGAATTG+TGG - chr4_1:81801224-81801243 None:intergenic 35.0%
! TCAAGGCTTTTACCATGTAT+TGG + chr4_1:81801228-81801247 Msa0577430:intron 35.0%
AAAAATGCAGCTCCAATACA+TGG - chr4_1:81801243-81801262 None:intergenic 35.0%
TTGGACAAGATCCAAATTTG+GGG - chr4_1:81801290-81801309 None:intergenic 35.0%
GTTGGACAAGATCCAAATTT+GGG - chr4_1:81801291-81801310 None:intergenic 35.0%
CCGTACTTGCATGAAATTTA+TGG + chr4_1:81801326-81801345 Msa0577430:intron 35.0%
! TGTAGAAAAGAGTGCAAGTA+CGG - chr4_1:81801470-81801489 None:intergenic 35.0%
AAAGTTGAGAAGTTAGGGTT+TGG - chr4_1:81801687-81801706 None:intergenic 35.0%
CCAACATAAAATTTGGCCAA+TGG - chr4_1:81801834-81801853 None:intergenic 35.0%
! CCATTGGCCAAATTTTATGT+TGG + chr4_1:81801831-81801850 Msa0577430:intron 35.0%
TTTCTGTCTGGATTCATTGT+AGG + chr4_1:81802228-81802247 Msa0577430:intron 35.0%
! TATTTAACTTCTCACTGCAC+AGG - chr4_1:81802514-81802533 None:intergenic 35.0%
TGAACGTATTATACTTGTGC+AGG + chr4_1:81802549-81802568 Msa0577430:intron 35.0%
CTTGCTTGTTTCATAAGAAG+GGG + chr4_1:81802652-81802671 Msa0577430:intron 35.0%
AAGGGGAAAGACAGAAAAAA+AGG + chr4_1:81802669-81802688 Msa0577430:intron 35.0%
AGGGGAAAGACAGAAAAAAA+GGG + chr4_1:81802670-81802689 Msa0577430:intron 35.0%
CATTAGACATCATTGCTAGT+TGG + chr4_1:81802868-81802887 Msa0577430:intron 35.0%
GTATCATAAGAAGGGGAAAA+CGG + chr4_1:81802933-81802952 Msa0577430:intron 35.0%
! TTCTTTGTTGATGAAGATGG+TGG + chr4_1:81803005-81803024 Msa0577430:intron 35.0%
! TCTTTGTTGATGAAGATGGT+GGG + chr4_1:81803006-81803025 Msa0577430:intron 35.0%
! TTTCAGCATGGATTAAGTGT+AGG + chr4_1:81803079-81803098 Msa0577430:CDS 35.0%
!! CAATAGCTTGTTGATGAAGA+TGG + chr4_1:81803110-81803129 Msa0577430:CDS 35.0%
GTTTCAGCAAGGATTAATTG+TGG + chr4_1:81803033-81803052 Msa0577430:intron 35.0%
AGAAGGAAGTGAAGAAAGAA+AGG + chr4_1:81803205-81803224 Msa0577430:CDS 35.0%
! AATGTGATTTGTAGGCACAT+AGG + chr4_1:81803338-81803357 Msa0577430:three_prime_UTR 35.0%
TGCAAATGTTTGCTTGGATA+AGG + chr4_1:81803485-81803504 Msa0577430:three_prime_UTR 35.0%
GAGAAAAACAGTTGGGATTT+AGG + chr4_1:81803582-81803601 Msa0577430:three_prime_UTR 35.0%
TCTAGATTTGAACTGGACAA+AGG - chr4_1:81803694-81803713 None:intergenic 35.0%
! GTTATTCACACCACCGTTTT+AGG + chr4_1:81798375-81798394 Msa0577430:five_prime_UTR 40.0%
TCCCTCTTACAATCCAGAAT+TGG + chr4_1:81798405-81798424 Msa0577430:five_prime_UTR 40.0%
CCCAATTCTGGATTGTAAGA+GGG - chr4_1:81798409-81798428 None:intergenic 40.0%
CCCTCTTACAATCCAGAATT+GGG + chr4_1:81798406-81798425 Msa0577430:five_prime_UTR 40.0%
ACCCAATTCTGGATTGTAAG+AGG - chr4_1:81798410-81798429 None:intergenic 40.0%
AAATGATTGGGAGTGGATAG+AGG - chr4_1:81798462-81798481 None:intergenic 40.0%
ATAGGAGAAATGATTGGGAG+TGG - chr4_1:81798469-81798488 None:intergenic 40.0%
AAGATGAAGCGCAACTGTTA+GGG - chr4_1:81798499-81798518 None:intergenic 40.0%
AAAGATGAAGCGCAACTGTT+AGG - chr4_1:81798500-81798519 None:intergenic 40.0%
TATACGGCCGAGTTAAATCA+GGG + chr4_1:81798803-81798822 Msa0577430:CDS 40.0%
CAGAGAACCCTGATTTAACT+CGG - chr4_1:81798813-81798832 None:intergenic 40.0%
CTCTGCTTCTTTCTTCTCAA+AGG + chr4_1:81798828-81798847 Msa0577430:CDS 40.0%
GGTTATTGACCTGAGATGAA+AGG - chr4_1:81798880-81798899 None:intergenic 40.0%
TTCGTTTACGTTGGAAGGAA+AGG + chr4_1:81799251-81799270 Msa0577430:intron 40.0%
!! TTTGAGTATTGGGTGTGTGT+AGG - chr4_1:81799690-81799709 None:intergenic 40.0%
TGTCCAAGAGAGAAGTAACA+CGG + chr4_1:81799758-81799777 Msa0577430:CDS 40.0%
AGAATAGATGGGCATGCATT+TGG + chr4_1:81799815-81799834 Msa0577430:intron 40.0%
GAATAGATGGGCATGCATTT+GGG + chr4_1:81799816-81799835 Msa0577430:intron 40.0%
CATTTGTCAATGCTAGCTGT+TGG + chr4_1:81800201-81800220 Msa0577430:intron 40.0%
!!! AATGCTAGCTGTTGGCTTTT+GGG + chr4_1:81800209-81800228 Msa0577430:intron 40.0%
AAGACATGATGAGGGTTATG+GGG - chr4_1:81800420-81800439 None:intergenic 40.0%
AATCTAGGTAGAGAGTTGCA+TGG - chr4_1:81800481-81800500 None:intergenic 40.0%
CACTCATGAAATGAGATGGA+AGG + chr4_1:81800542-81800561 Msa0577430:intron 40.0%
GAAATGAGATGGAAGGGAAA+AGG + chr4_1:81800549-81800568 Msa0577430:intron 40.0%
GCTTTCAAGAGTCTGTTGAA+AGG + chr4_1:81800595-81800614 Msa0577430:intron 40.0%
! CTGCAACATTTTCCATGCTA+TGG + chr4_1:81800846-81800865 Msa0577430:intron 40.0%
ACATGTGAGAAACCATAGCA+TGG - chr4_1:81800861-81800880 None:intergenic 40.0%
TGGACAAGATCCAAATTTGG+GGG - chr4_1:81801289-81801308 None:intergenic 40.0%
GGTTGGACAAGATCCAAATT+TGG - chr4_1:81801292-81801311 None:intergenic 40.0%
! TATGTTGGGTTTTCCTGTCT+TGG + chr4_1:81801846-81801865 Msa0577430:intron 40.0%
GTGCAGTGCAATGAAATTCA+AGG - chr4_1:81801884-81801903 None:intergenic 40.0%
TATTATACCTGTGCAGTGAG+AGG + chr4_1:81802453-81802472 Msa0577430:intron 40.0%
GGGGAAAGACAGAAAAAAAG+GGG + chr4_1:81802671-81802690 Msa0577430:intron 40.0%
GGGAAAGACAGAAAAAAAGG+GGG + chr4_1:81802672-81802691 Msa0577430:intron 40.0%
TAAAAGGGATCTTGATGAGG+AGG - chr4_1:81802774-81802793 None:intergenic 40.0%
! TCCTCATCAAGATCCCTTTT+AGG + chr4_1:81802773-81802792 Msa0577430:intron 40.0%
! CTTTGTTGATGAAGATGGTG+GGG + chr4_1:81803007-81803026 Msa0577430:intron 40.0%
!! TAGCTTGTTGATGAAGATGG+TGG + chr4_1:81803113-81803132 Msa0577430:CDS 40.0%
!! AGCTTGTTGATGAAGATGGT+GGG + chr4_1:81803114-81803133 Msa0577430:CDS 40.0%
!! CAGAAGCTTGTTGATGAAGA+TGG + chr4_1:81803173-81803192 Msa0577430:CDS 40.0%
!! AAGCTTGTTGATGAAGATGG+TGG + chr4_1:81803176-81803195 Msa0577430:CDS 40.0%
!! AGCTTGTTGATGAAGATGGT+GGG + chr4_1:81803114-81803133 Msa0577430:CDS 40.0%
GGAAGTGAAGAAAGAAAGGA+AGG + chr4_1:81803209-81803228 Msa0577430:CDS 40.0%
GTGAAGAAAGAAAGGAAGGA+AGG + chr4_1:81803213-81803232 Msa0577430:CDS 40.0%
AGAAAGAAAGGAAGGAAGGA+AGG + chr4_1:81803217-81803236 Msa0577430:CDS 40.0%
!!! TCTGTCTCATCCCTTGTTTT+TGG + chr4_1:81803395-81803414 Msa0577430:three_prime_UTR 40.0%
!!! CTGTCTCATCCCTTGTTTTT+GGG + chr4_1:81803396-81803415 Msa0577430:three_prime_UTR 40.0%
GGCAAACATCCCAAAAACAA+GGG - chr4_1:81803408-81803427 None:intergenic 40.0%
TGGCAAACATCCCAAAAACA+AGG - chr4_1:81803409-81803428 None:intergenic 40.0%
CAAGCAAACATTTGCATGTG+GGG - chr4_1:81803481-81803500 None:intergenic 40.0%
CCAAGCAAACATTTGCATGT+GGG - chr4_1:81803482-81803501 None:intergenic 40.0%
TCCAAGCAAACATTTGCATG+TGG - chr4_1:81803483-81803502 None:intergenic 40.0%
! GAGGGAGAGTATGCCTAAAA+CGG - chr4_1:81798391-81798410 None:intergenic 45.0%
! GTTTTCTGTTTGGGAGAGTG+GGG - chr4_1:81798732-81798751 None:intergenic 45.0%
! CGTTTTCTGTTTGGGAGAGT+GGG - chr4_1:81798733-81798752 None:intergenic 45.0%
!! ATCGTGGTGATGGCACTATA+CGG + chr4_1:81798787-81798806 Msa0577430:exon 45.0%
CTATACGGCCGAGTTAAATC+AGG + chr4_1:81798802-81798821 Msa0577430:CDS 45.0%
ATCCTTGCTCCTTTCATCTC+AGG + chr4_1:81798868-81798887 Msa0577430:CDS 45.0%
CCAACGTAAACGAATGACCA+TGG - chr4_1:81799245-81799264 None:intergenic 45.0%
CCATGGTCATTCGTTTACGT+TGG + chr4_1:81799242-81799261 Msa0577430:intron 45.0%
GGTCATTCGTTTACGTTGGA+AGG + chr4_1:81799246-81799265 Msa0577430:intron 45.0%
TTCATGTTTGCAGCATCTGC+TGG + chr4_1:81799723-81799742 Msa0577430:intron 45.0%
!! TTGCCGTGTTACTTCTCTCT+TGG - chr4_1:81799764-81799783 None:intergenic 45.0%
!!! CAATGCTAGCTGTTGGCTTT+TGG + chr4_1:81800208-81800227 Msa0577430:intron 45.0%
GGACAAGATCCAAATTTGGG+GGG - chr4_1:81801288-81801307 None:intergenic 45.0%
TTATGGAAAGCCTCCCTAGT+TGG + chr4_1:81801343-81801362 Msa0577430:intron 45.0%
TTATGGAAAGCCTCCCTAGT+TGG + chr4_1:81801343-81801362 Msa0577430:intron 45.0%
GTAAATGGAGCTTCCAAGAC+AGG - chr4_1:81801862-81801881 None:intergenic 45.0%
TCTTCTGCTGCAGAGGTAAT+GGG - chr4_1:81802305-81802324 None:intergenic 45.0%
CATTTAACCTCTCACTGCAC+AGG - chr4_1:81802463-81802482 None:intergenic 45.0%
GGATCTTGATGAGGAGGTAA+TGG - chr4_1:81802768-81802787 None:intergenic 45.0%
GCCTAAAAGGGATCTTGATG+AGG - chr4_1:81802777-81802796 None:intergenic 45.0%
! GCTTGTTGATGAAGATGGTG+GGG + chr4_1:81803115-81803134 Msa0577430:CDS 45.0%
! GCTTGTTGATGAAGATGGTG+GGG + chr4_1:81803115-81803134 Msa0577430:CDS 45.0%
GAAAGGAAGGAAGGAAGGAA+CGG + chr4_1:81803222-81803241 Msa0577430:CDS 45.0%
AAAGGAAGGAAGGAAGGAAC+GGG + chr4_1:81803223-81803242 Msa0577430:CDS 45.0%
CCCACATGCAAATGTTTGCT+TGG + chr4_1:81803479-81803498 Msa0577430:three_prime_UTR 45.0%
!! ATAAAAAAAATCAATAAAAA+AGG - chr4_1:81799306-81799325 None:intergenic 5.0%
!! AATATTAAATTATTTCAAAA+TGG + chr4_1:81800345-81800364 Msa0577430:intron 5.0%
!! ATATTAAATTATTTCAAAAT+GGG + chr4_1:81800346-81800365 Msa0577430:intron 5.0%
!!! TATTTTTTATTTTCATTATT+TGG + chr4_1:81802200-81802219 Msa0577430:intron 5.0%
! GGAGAGTATGCCTAAAACGG+TGG - chr4_1:81798388-81798407 None:intergenic 50.0%
GATTGGGCTTGACCCAATTC+TGG - chr4_1:81798421-81798440 None:intergenic 50.0%
TACCAGTTCGAGATCGACTG+TGG - chr4_1:81798573-81798592 None:intergenic 50.0%
! GTGGGGAGTGAAGTGTTTGA+AGG - chr4_1:81798715-81798734 None:intergenic 50.0%
! GCGTTTTCTGTTTGGGAGAG+TGG - chr4_1:81798734-81798753 None:intergenic 50.0%
AGGGTTACGAATCGTGGTGA+TGG + chr4_1:81798777-81798796 Msa0577430:exon 50.0%
GACCTGAGATGAAAGGAGCA+AGG - chr4_1:81798873-81798892 None:intergenic 50.0%
AGCATCTGCTGGCAATGAAC+AGG + chr4_1:81799734-81799753 Msa0577430:intron 50.0%
TTGCCTTATAGCAGCTGTGC+AGG + chr4_1:81799914-81799933 Msa0577430:CDS 50.0%
GTACCTGCACAGCTGCTATA+AGG - chr4_1:81799920-81799939 None:intergenic 50.0%
CGTGTATGCCTTGCCAACTA+GGG - chr4_1:81801424-81801443 None:intergenic 50.0%
ACGTGTATGCCTTGCCAACT+AGG - chr4_1:81801425-81801444 None:intergenic 50.0%
TAGTTGGCAAGGCATACACG+TGG + chr4_1:81801424-81801443 Msa0577430:intron 50.0%
CTCTTCTGCTGCAGAGGTAA+TGG - chr4_1:81802306-81802325 None:intergenic 50.0%
TACCTCTGCAGCAGAAGAGA+AGG + chr4_1:81802307-81802326 Msa0577430:CDS 50.0%
ATCCTTCTCTTCTGCTGCAG+AGG - chr4_1:81802312-81802331 None:intergenic 50.0%
TGGTGGGGATTGTTTCAGCA+AGG + chr4_1:81803022-81803041 Msa0577430:intron 50.0%
TGGTGGGGATTGTTTCAGCA+AGG + chr4_1:81803022-81803041 Msa0577430:intron 50.0%
!! GAAGATGGTGGGGATTGAGA+AGG + chr4_1:81803188-81803207 Msa0577430:CDS 50.0%
AAGGAAGGAACGGGATGTGT+TGG + chr4_1:81803232-81803251 Msa0577430:CDS 50.0%
! TGGTGGGCGACAATATGCTG+GGG - chr4_1:81798547-81798566 None:intergenic 55.0%
!! GTGGTGGGCGACAATATGCT+GGG - chr4_1:81798548-81798567 None:intergenic 55.0%
!! AGATCGACTGTGGTGGTGGT+GGG - chr4_1:81798563-81798582 None:intergenic 55.0%
TTCGAGATCGACTGTGGTGG+TGG - chr4_1:81798567-81798586 None:intergenic 55.0%
CAGTTCGAGATCGACTGTGG+TGG - chr4_1:81798570-81798589 None:intergenic 55.0%
CACCACAGTCGATCTCGAAC+TGG + chr4_1:81798568-81798587 Msa0577430:five_prime_UTR 55.0%
GAAAGCCTCCCTAGTTGGCA+AGG + chr4_1:81801348-81801367 Msa0577430:intron 55.0%
GGTGGATGCCTTGCCAACTA+GGG - chr4_1:81801359-81801378 None:intergenic 55.0%
! TGGTGGATGCCTTGCCAACT+AGG - chr4_1:81801360-81801379 None:intergenic 55.0%
GAAAGCCTCCCTAGTTGGCA+AGG + chr4_1:81801348-81801367 Msa0577430:intron 55.0%
GTATGCCTTGCCAACTAGGG+AGG - chr4_1:81801421-81801440 None:intergenic 55.0%
GTTGTGCGTCTGATCCCCAT+TGG + chr4_1:81801815-81801834 Msa0577430:intron 55.0%
! CAATATGCTGGGGGTGGTGG+TGG - chr4_1:81798537-81798556 None:intergenic 60.0%
CGACAATATGCTGGGGGTGG+TGG - chr4_1:81798540-81798559 None:intergenic 60.0%
GGTGGGCGACAATATGCTGG+GGG - chr4_1:81798546-81798565 None:intergenic 60.0%
!! GGTGGTGGGCGACAATATGC+TGG - chr4_1:81798549-81798568 None:intergenic 60.0%
!! GAGATCGACTGTGGTGGTGG+TGG - chr4_1:81798564-81798583 None:intergenic 60.0%
GGATGCCTTGCCAACTAGGG+AGG - chr4_1:81801356-81801375 None:intergenic 60.0%
!! TATGCTGGGGGTGGTGGTGG+CGG - chr4_1:81798534-81798553 None:intergenic 65.0%
GGGCGACAATATGCTGGGGG+TGG - chr4_1:81798543-81798562 None:intergenic 65.0%
!! GGTGGTGGTGGCGGCTGTTG+AGG - chr4_1:81798525-81798544 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81798333 81803936 81798333 ID=Msa0577430;Name=Msa0577430
chr4_1 mRNA 81798333 81803936 81798333 ID=Msa0577430-mRNA-1;Parent=Msa0577430;Name=Msa0577430-mRNA-1;_AED=0.35;_eAED=0.35;_QI=463|0.25|0.4|1|1|1|5|673|172
chr4_1 exon 81798333 81798889 81798333 ID=Msa0577430-mRNA-1:exon:29485;Parent=Msa0577430-mRNA-1
chr4_1 exon 81799736 81799809 81799736 ID=Msa0577430-mRNA-1:exon:29486;Parent=Msa0577430-mRNA-1
chr4_1 exon 81799891 81799935 81799891 ID=Msa0577430-mRNA-1:exon:29487;Parent=Msa0577430-mRNA-1
chr4_1 exon 81802250 81802366 81802250 ID=Msa0577430-mRNA-1:exon:29488;Parent=Msa0577430-mRNA-1
chr4_1 exon 81803075 81803936 81803075 ID=Msa0577430-mRNA-1:exon:29489;Parent=Msa0577430-mRNA-1
chr4_1 five_prime_UTR 81798333 81798795 81798333 ID=Msa0577430-mRNA-1:five_prime_utr;Parent=Msa0577430-mRNA-1
chr4_1 CDS 81798796 81798889 81798796 ID=Msa0577430-mRNA-1:cds;Parent=Msa0577430-mRNA-1
chr4_1 CDS 81799736 81799809 81799736 ID=Msa0577430-mRNA-1:cds;Parent=Msa0577430-mRNA-1
chr4_1 CDS 81799891 81799935 81799891 ID=Msa0577430-mRNA-1:cds;Parent=Msa0577430-mRNA-1
chr4_1 CDS 81802250 81802366 81802250 ID=Msa0577430-mRNA-1:cds;Parent=Msa0577430-mRNA-1
chr4_1 CDS 81803075 81803263 81803075 ID=Msa0577430-mRNA-1:cds;Parent=Msa0577430-mRNA-1
chr4_1 three_prime_UTR 81803264 81803936 81803264 ID=Msa0577430-mRNA-1:three_prime_utr;Parent=Msa0577430-mRNA-1
Gene Sequence

>Msa0577430

ATGGCACTATACGGCCGAGTTAAATCAGGGTTCTCTGCTTCTTTCTTCTCAAAGGTTTCTCTTCAATGCTCAATCCTTGCTCCTTTCATCTCAGCATCTGCTGGCAATGAACAGGATGTCCAAGAGAGAAGTAACACGGCAATTGCTTGTTTCAACTCTATTCTTAGAAAATTCAAAAAGATTAGGTTAGATTGCCTTATAGCAGCTGTGCAGGCTGAGATTCTGAAGCATTTTGTTGAACCCAACACTATTCTCTTTGAAAATTCCCATTACCTCTGCAGCAGAAGAGAAGGATCTTGTATTAATTTTTTGGAGCTAGAAGAAGCAGAAAGAATTTCAGCATGGATTAAGTGTAGGTTGAAAATCAATAGCTTGTTGATGAAGATGGTGGGGATTGTTTCAGCAAGGATTAATTGTGGGTTGAAAATCAGAAGCTTGTTGATGAAGATGGTGGGGATTGAGAAGGAAGTGAAGAAAGAAAGGAAGGAAGGAAGGAACGGGATGTGTTGGTGCCAATGA
Protein sequence

>Msa0577430

MALYGRVKSGFSASFFSKVSLQCSILAPFISASAGNEQDVQERSNTAIACFNSILRKFKKIRLDCLIAAVQAEILKHFVEPNTILFENSHYLCSRREGSCINFLELEEAERISAWIKCRLKINSLLMKMVGIVSARINCGLKIRSLLMKMVGIEKEVKKERKEGRNGMCWCQ*