Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893710 | XP_003609734.2 | 80.488 | 164 | 18 | 2 | 71 | 220 | 226 | 389 | 1.22e-85 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893710 | sp|Q9FJ06|TBL4_ARATH | 49.701 | 167 | 68 | 4 | 69 | 220 | 210 | 375 | 1.52e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893710 | G7JMR6 | 80.488 | 164 | 18 | 2 | 71 | 220 | 226 | 389 | 5.83e-86 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa0893710 | 0.811225 | 7.786164e-51 | -8.615850e-47 |
| Msa0213360 | Msa0893710 | 0.817374 | 3.409365e-52 | -8.615850e-47 |
| Msa0431880 | Msa0893710 | 0.806799 | 6.900954e-50 | -8.615850e-47 |
| Msa0538600 | Msa0893710 | 0.816630 | 5.008003e-52 | -8.615850e-47 |
| Msa0577430 | Msa0893710 | 0.809813 | 1.571614e-50 | -8.615850e-47 |
| Msa0871120 | Msa0893710 | 0.812135 | 4.936127e-51 | -8.615850e-47 |
| Msa0893710 | Msa0925290 | 0.815957 | 7.083952e-52 | -8.615850e-47 |
| Msa0893710 | Msa0988010 | 0.818364 | 2.037298e-52 | -8.615850e-47 |
| Msa0893710 | Msa1296220 | 0.957055 | 6.812277e-115 | -8.615850e-47 |
| Msa0893710 | Msa1368590 | 0.829807 | 4.186314e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893710 | MtrunA17_Chr4g0068111 | 80.488 | 164 | 18 | 2 | 71 | 220 | 226 | 389 | 1.12e-89 | 271 |
| Msa0893710 | MtrunA17_Chr7g0258851 | 46.497 | 157 | 70 | 2 | 77 | 220 | 366 | 521 | 6.87e-45 | 157 |
| Msa0893710 | MtrunA17_Chr1g0175671 | 43.258 | 178 | 85 | 4 | 56 | 220 | 269 | 443 | 3.33e-44 | 154 |
| Msa0893710 | MtrunA17_Chr8g0368461 | 47.134 | 157 | 68 | 2 | 77 | 220 | 308 | 462 | 4.70e-43 | 152 |
| Msa0893710 | MtrunA17_Chr1g0213281 | 41.071 | 168 | 84 | 3 | 67 | 220 | 283 | 449 | 2.24e-42 | 150 |
| Msa0893710 | MtrunA17_Chr5g0413271 | 45.570 | 158 | 71 | 2 | 76 | 220 | 255 | 410 | 1.87e-40 | 144 |
| Msa0893710 | MtrunA17_Chr4g0071391 | 39.490 | 157 | 81 | 2 | 77 | 220 | 227 | 382 | 7.17e-34 | 125 |
| Msa0893710 | MtrunA17_Chr1g0150371 | 96.296 | 54 | 2 | 0 | 24 | 77 | 61 | 114 | 5.71e-31 | 111 |
| Msa0893710 | MtrunA17_Chr7g0269991 | 39.103 | 156 | 79 | 3 | 78 | 220 | 256 | 408 | 6.11e-29 | 112 |
| Msa0893710 | MtrunA17_Chr3g0105301 | 29.878 | 164 | 88 | 3 | 78 | 220 | 155 | 312 | 1.89e-18 | 82.8 |
| Msa0893710 | MtrunA17_Chr2g0287901 | 29.605 | 152 | 93 | 2 | 61 | 199 | 200 | 350 | 2.97e-17 | 79.7 |
| Msa0893710 | MtrunA17_Chr7g0259711 | 30.065 | 153 | 91 | 3 | 61 | 199 | 194 | 344 | 3.35e-17 | 79.7 |
| Msa0893710 | MtrunA17_Chr4g0045951 | 27.184 | 206 | 115 | 6 | 41 | 220 | 110 | 306 | 4.14e-17 | 79.0 |
| Msa0893710 | MtrunA17_Chr4g0045941 | 28.395 | 162 | 95 | 5 | 73 | 220 | 140 | 294 | 1.05e-15 | 74.7 |
| Msa0893710 | MtrunA17_Chr2g0283581 | 27.215 | 158 | 94 | 5 | 77 | 220 | 152 | 302 | 1.77e-15 | 74.3 |
| Msa0893710 | MtrunA17_Chr3g0126021 | 27.673 | 159 | 103 | 1 | 25 | 183 | 211 | 357 | 3.22e-15 | 73.9 |
| Msa0893710 | MtrunA17_Chr5g0430371 | 32.075 | 106 | 66 | 1 | 78 | 183 | 170 | 269 | 7.39e-15 | 72.8 |
| Msa0893710 | MtrunA17_Chr1g0171171 | 25.157 | 159 | 105 | 2 | 71 | 220 | 157 | 310 | 8.12e-15 | 72.4 |
| Msa0893710 | MtrunA17_Chr1g0210771 | 28.261 | 138 | 85 | 2 | 78 | 206 | 170 | 302 | 3.39e-14 | 70.5 |
| Msa0893710 | MtrunA17_Chr8g0384151 | 26.415 | 159 | 105 | 1 | 25 | 183 | 168 | 314 | 3.57e-14 | 70.9 |
| Msa0893710 | MtrunA17_Chr2g0314801 | 30.233 | 129 | 74 | 3 | 107 | 220 | 169 | 296 | 3.60e-14 | 70.5 |
| Msa0893710 | MtrunA17_Chr2g0314791 | 33.333 | 141 | 77 | 5 | 78 | 210 | 148 | 279 | 1.81e-13 | 68.6 |
| Msa0893710 | MtrunA17_Chr2g0325481 | 27.848 | 158 | 93 | 4 | 77 | 220 | 161 | 311 | 1.30e-12 | 65.9 |
| Msa0893710 | MtrunA17_Chr3g0085071 | 25.481 | 208 | 127 | 7 | 32 | 220 | 110 | 308 | 1.61e-11 | 62.8 |
| Msa0893710 | MtrunA17_Chr4g0005491 | 26.570 | 207 | 122 | 8 | 37 | 220 | 137 | 336 | 1.71e-11 | 62.8 |
| Msa0893710 | MtrunA17_Chr4g0006991 | 26.144 | 153 | 87 | 5 | 77 | 208 | 198 | 345 | 2.86e-11 | 62.4 |
| Msa0893710 | MtrunA17_Chr5g0413851 | 30.000 | 130 | 79 | 4 | 57 | 183 | 130 | 250 | 6.00e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893710 | AT5G49340.1 | 49.701 | 167 | 68 | 4 | 69 | 220 | 210 | 375 | 1.54e-46 | 160 |
| Msa0893710 | AT3G12060.1 | 44.586 | 157 | 73 | 2 | 77 | 220 | 314 | 469 | 6.40e-44 | 154 |
| Msa0893710 | AT5G06700.1 | 43.949 | 157 | 74 | 2 | 77 | 220 | 373 | 528 | 5.88e-43 | 152 |
| Msa0893710 | AT1G60790.1 | 46.341 | 164 | 73 | 3 | 71 | 220 | 303 | 465 | 4.79e-41 | 147 |
| Msa0893710 | AT5G20590.1 | 38.217 | 157 | 83 | 2 | 77 | 220 | 260 | 415 | 3.05e-34 | 127 |
| Msa0893710 | AT3G62390.1 | 37.179 | 156 | 82 | 3 | 78 | 220 | 257 | 409 | 3.28e-31 | 119 |
| Msa0893710 | AT5G20590.2 | 41.905 | 105 | 60 | 1 | 77 | 181 | 260 | 363 | 2.20e-25 | 102 |
| Msa0893710 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 78 | 183 | 257 | 360 | 1.44e-24 | 100 |
| Msa0893710 | AT5G19160.1 | 32.386 | 176 | 100 | 4 | 47 | 208 | 191 | 361 | 1.19e-23 | 98.6 |
| Msa0893710 | AT5G58600.1 | 31.765 | 170 | 83 | 5 | 55 | 205 | 163 | 318 | 5.89e-22 | 93.2 |
| Msa0893710 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 47 | 183 | 191 | 323 | 1.43e-21 | 91.7 |
| Msa0893710 | AT3G06080.2 | 31.138 | 167 | 96 | 4 | 47 | 199 | 195 | 356 | 4.04e-20 | 88.6 |
| Msa0893710 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 55 | 183 | 163 | 278 | 5.23e-20 | 86.3 |
| Msa0893710 | AT3G06080.1 | 32.609 | 138 | 87 | 3 | 47 | 183 | 195 | 327 | 2.75e-18 | 82.4 |
| Msa0893710 | AT3G11570.1 | 26.974 | 152 | 98 | 1 | 82 | 220 | 205 | 356 | 1.37e-17 | 80.9 |
| Msa0893710 | AT1G29050.1 | 23.786 | 206 | 123 | 5 | 41 | 220 | 126 | 323 | 9.53e-16 | 75.5 |
| Msa0893710 | AT1G78710.1 | 28.502 | 207 | 112 | 8 | 41 | 220 | 102 | 299 | 1.72e-15 | 74.7 |
| Msa0893710 | AT1G48880.1 | 30.822 | 146 | 88 | 2 | 38 | 183 | 207 | 339 | 6.24e-15 | 73.6 |
| Msa0893710 | AT5G06230.2 | 27.044 | 159 | 102 | 2 | 61 | 206 | 130 | 287 | 6.96e-15 | 73.2 |
| Msa0893710 | AT5G06230.1 | 27.044 | 159 | 102 | 2 | 61 | 206 | 171 | 328 | 7.33e-15 | 73.2 |
| Msa0893710 | AT2G31110.2 | 26.875 | 160 | 92 | 5 | 77 | 220 | 156 | 306 | 5.59e-13 | 67.4 |
| Msa0893710 | AT2G31110.1 | 26.087 | 161 | 94 | 5 | 76 | 220 | 7 | 158 | 6.56e-13 | 65.9 |
| Msa0893710 | AT2G30900.1 | 32.500 | 160 | 81 | 6 | 79 | 220 | 158 | 308 | 8.30e-13 | 67.0 |
| Msa0893710 | AT3G54260.1 | 24.812 | 133 | 89 | 3 | 78 | 204 | 162 | 289 | 3.71e-12 | 65.1 |
| Msa0893710 | AT2G24970.1 | 46.377 | 69 | 37 | 0 | 9 | 77 | 47 | 115 | 4.70e-12 | 62.0 |
| Msa0893710 | AT2G30010.1 | 29.060 | 117 | 75 | 3 | 69 | 183 | 160 | 270 | 1.05e-11 | 63.9 |
| Msa0893710 | AT2G30010.2 | 29.060 | 117 | 75 | 3 | 69 | 183 | 203 | 313 | 1.20e-11 | 63.9 |
| Msa0893710 | AT5G06230.3 | 27.731 | 119 | 85 | 1 | 61 | 179 | 171 | 288 | 1.27e-11 | 63.2 |
Find 64 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 6_1:+78512320 | Msa0893710:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 6_1:-78512368 | None:intergenic |
| AGCTTGAAGCTTTGCGTTGC+TGG | 0.291568 | 6_1:-78510389 | None:intergenic |
| ACCTAACATACTTCCTATAA+TGG | 0.306753 | 6_1:-78512995 | None:intergenic |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 6_1:+78511505 | Msa0893710:intron |
| ATTAAATAAATTTAAATGCC+TGG | 0.346786 | 6_1:+78513192 | Msa0893710:three_prime_UTR |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 6_1:-78511244 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 6_1:-78512367 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 6_1:-78512348 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 6_1:+78512366 | Msa0893710:CDS |
| AGCAAATTGAACCTGAGATT+TGG | 0.376406 | 6_1:-78510881 | None:intergenic |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 6_1:-78512920 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 6_1:+78512411 | Msa0893710:CDS |
| GTGGTCTCTTACTCTCTGAT+TGG | 0.386694 | 6_1:+78510504 | Msa0893710:five_prime_UTR |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.395436 | 6_1:-78512413 | None:intergenic |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 6_1:-78512919 | None:intergenic |
| GAACGGCGGTGGAGCGGTGG+TGG | 0.405371 | 6_1:-78510335 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 6_1:-78511589 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 6_1:+78511612 | Msa0893710:CDS |
| ATATGTGTGTGATCCATTAT+AGG | 0.428230 | 6_1:+78512982 | Msa0893710:exon |
| TCGACAATTCCCGTTGTCAA+TGG | 0.434215 | 6_1:-78512952 | None:intergenic |
| TTAAATAAATTTAAATGCCT+GGG | 0.445165 | 6_1:+78513193 | Msa0893710:three_prime_UTR |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 6_1:-78511590 | None:intergenic |
| GAAGCTTTGCGTTGCTGGAA+GGG | 0.484454 | 6_1:-78510384 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.485620 | 6_1:+78511270 | Msa0893710:CDS |
| AGGATGAGACATTATCAATC+GGG | 0.489141 | 6_1:+78513044 | Msa0893710:three_prime_UTR |
| GAACGCTGGTGGAACGGCGG+TGG | 0.496006 | 6_1:-78510346 | None:intergenic |
| AAGGATGAGACATTATCAAT+CGG | 0.498917 | 6_1:+78513043 | Msa0893710:three_prime_UTR |
| CTACTGTTATGCCAAATCTC+AGG | 0.502528 | 6_1:+78510870 | Msa0893710:CDS |
| TCCATTATAGGAAGTATGTT+AGG | 0.502786 | 6_1:+78512994 | Msa0893710:three_prime_UTR |
| TGAAGCTTTGCGTTGCTGGA+AGG | 0.503173 | 6_1:-78510385 | None:intergenic |
| GTGGAACGGCGGTGGAGCGG+TGG | 0.506198 | 6_1:-78510338 | None:intergenic |
| GCAGCATATCCATTGACAAC+GGG | 0.506258 | 6_1:+78512943 | Msa0893710:CDS |
| AGCTGGTAAATCTGTAGCCC+AGG | 0.517798 | 6_1:-78513210 | None:intergenic |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 6_1:+78511549 | Msa0893710:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 6_1:+78512886 | Msa0893710:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 6_1:+78511237 | Msa0893710:intron |
| CATTTAAGACATGGGCTAAG+TGG | 0.521768 | 6_1:+78512686 | Msa0893710:CDS |
| GGAAGTATGTTAGGTGGTGT+TGG | 0.525857 | 6_1:+78513003 | Msa0893710:three_prime_UTR |
| CTGGTGGAACGGCGGTGGAG+CGG | 0.529400 | 6_1:-78510341 | None:intergenic |
| GCGGTGGAGCGGTGGTGGAA+CGG | 0.549350 | 6_1:-78510330 | None:intergenic |
| GTAGAATTTGTTCAAACTCG+TGG | 0.551748 | 6_1:+78510463 | Msa0893710:five_prime_UTR |
| GTTGTCGAACGCTGGTGGAA+CGG | 0.553100 | 6_1:-78510352 | None:intergenic |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 6_1:-78511243 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 6_1:+78512887 | Msa0893710:CDS |
| ATTTAAGACATGGGCTAAGT+GGG | 0.563096 | 6_1:+78512687 | Msa0893710:CDS |
| GAGCAGTTGTCGAACGCTGG+TGG | 0.580733 | 6_1:-78510357 | None:intergenic |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 6_1:-78512366 | None:intergenic |
| GATGAGCAGTTGTCGAACGC+TGG | 0.596219 | 6_1:-78510360 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 6_1:+78512677 | Msa0893710:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 6_1:-78512453 | None:intergenic |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | 6_1:+78511562 | Msa0893710:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 6_1:+78511238 | Msa0893710:CDS |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 6_1:+78512678 | Msa0893710:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | 6_1:+78511561 | Msa0893710:CDS |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 6_1:-78511588 | None:intergenic |
| AGTAGAAACTACTTTCAGCA+AGG | 0.629801 | 6_1:+78512616 | Msa0893710:intron |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 6_1:+78512888 | Msa0893710:CDS |
| GGATGAGACATTATCAATCG+GGG | 0.648771 | 6_1:+78513045 | Msa0893710:three_prime_UTR |
| GTCGAACGCTGGTGGAACGG+CGG | 0.651355 | 6_1:-78510349 | None:intergenic |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 6_1:-78512716 | None:intergenic |
| ATTATAGGAAGTATGTTAGG+TGG | 0.660255 | 6_1:+78512997 | Msa0893710:three_prime_UTR |
| TGCAGCATATCCATTGACAA+CGG | 0.664780 | 6_1:+78512942 | Msa0893710:CDS |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 6_1:+78511239 | Msa0893710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCTAATTTGAGTTTT+AGG | + | chr6_1:78510687-78510706 | Msa0893710:intron | 15.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | + | chr6_1:78510774-78510793 | Msa0893710:intron | 15.0% |
| !! | TTGAAATAAATTAAGTAACA+AGG | - | chr6_1:78510936-78510955 | None:intergenic | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | - | chr6_1:78510984-78511003 | None:intergenic | 15.0% |
| !! | AATTAAAAAGAGTGAAAAAA+GGG | - | chr6_1:78511171-78511190 | None:intergenic | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | + | chr6_1:78512566-78512585 | Msa0893710:intron | 15.0% |
| !! | ATTAAATAAATTTAAATGCC+TGG | + | chr6_1:78513192-78513211 | Msa0893710:three_prime_UTR | 15.0% |
| !! | TTAAATAAATTTAAATGCCT+GGG | + | chr6_1:78513193-78513212 | Msa0893710:three_prime_UTR | 15.0% |
| !! | ATTAGATTAAACTCACAATT+AGG | - | chr6_1:78510678-78510697 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | + | chr6_1:78510703-78510722 | Msa0893710:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | + | chr6_1:78510780-78510799 | Msa0893710:intron | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | - | chr6_1:78511006-78511025 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTTGTTTGAATT+AGG | + | chr6_1:78511074-78511093 | Msa0893710:intron | 20.0% |
| !! | ATTAAAAAGAGTGAAAAAAG+GGG | - | chr6_1:78511170-78511189 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+AGG | - | chr6_1:78511172-78511191 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | + | chr6_1:78511206-78511225 | Msa0893710:intron | 20.0% |
| !! | TATACATATGTTAGTTGAAT+TGG | + | chr6_1:78511440-78511459 | Msa0893710:intron | 20.0% |
| !! | ATACATATGTTAGTTGAATT+GGG | + | chr6_1:78511441-78511460 | Msa0893710:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | - | chr6_1:78512135-78512154 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | - | chr6_1:78512136-78512155 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | + | chr6_1:78512509-78512528 | Msa0893710:CDS | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | + | chr6_1:78512510-78512529 | Msa0893710:CDS | 20.0% |
| !!! | TAGTTAAGTAATTGATTCTA+TGG | + | chr6_1:78512837-78512856 | Msa0893710:intron | 20.0% |
| !!! | TGAAATTTCAGTGTTTTTAA+AGG | + | chr6_1:78513113-78513132 | Msa0893710:three_prime_UTR | 20.0% |
| ! | TGATCTAATCTATGAGTATT+AGG | + | chr6_1:78510555-78510574 | Msa0893710:intron | 25.0% |
| ! | TGATCTAATCTATGAGTATT+AGG | + | chr6_1:78510555-78510574 | Msa0893710:intron | 25.0% |
| ! | TTAAAAAGAGTGAAAAAAGG+GGG | - | chr6_1:78511169-78511188 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | - | chr6_1:78511203-78511222 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | + | chr6_1:78511205-78511224 | Msa0893710:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | + | chr6_1:78511307-78511326 | Msa0893710:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | + | chr6_1:78511339-78511358 | Msa0893710:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | + | chr6_1:78511363-78511382 | Msa0893710:intron | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | - | chr6_1:78511792-78511811 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | + | chr6_1:78511919-78511938 | Msa0893710:intron | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | + | chr6_1:78511995-78512014 | Msa0893710:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | + | chr6_1:78512051-78512070 | Msa0893710:intron | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | - | chr6_1:78512181-78512200 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | + | chr6_1:78512191-78512210 | Msa0893710:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | + | chr6_1:78512320-78512339 | Msa0893710:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | + | chr6_1:78512476-78512495 | Msa0893710:CDS | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | - | chr6_1:78512922-78512941 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | - | chr6_1:78512923-78512942 | None:intergenic | 25.0% |
| ! | AGCTTTTCATTCGAAGAAAT+AGG | + | chr6_1:78510738-78510757 | Msa0893710:CDS | 30.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | + | chr6_1:78511310-78511329 | Msa0893710:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | + | chr6_1:78511311-78511330 | Msa0893710:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | + | chr6_1:78511364-78511383 | Msa0893710:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | + | chr6_1:78511454-78511473 | Msa0893710:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | - | chr6_1:78511592-78511611 | None:intergenic | 30.0% | |
| ! | AAGAGCACACATTCAAATAT+AGG | - | chr6_1:78511690-78511709 | None:intergenic | 30.0% |
| !!! | TCTTTGATTTGCCTTTTTTG+TGG | + | chr6_1:78511706-78511725 | Msa0893710:intron | 30.0% |
| !!! | CTTTGATTTGCCTTTTTTGT+GGG | + | chr6_1:78511707-78511726 | Msa0893710:intron | 30.0% |
| ATGCATACATGAATGAGTAA+AGG | - | chr6_1:78511748-78511767 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | + | chr6_1:78511827-78511846 | Msa0893710:intron | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | - | chr6_1:78512129-78512148 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | + | chr6_1:78512195-78512214 | Msa0893710:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | + | chr6_1:78512273-78512292 | Msa0893710:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | + | chr6_1:78512313-78512332 | Msa0893710:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | - | chr6_1:78512370-78512389 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | - | chr6_1:78512371-78512390 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | - | chr6_1:78512456-78512475 | None:intergenic | 30.0% | |
| ! | TACAACAAGCATTTAAGACA+TGG | + | chr6_1:78512677-78512696 | Msa0893710:CDS | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | + | chr6_1:78512678-78512697 | Msa0893710:CDS | 30.0% |
| ATATGTGTGTGATCCATTAT+AGG | + | chr6_1:78512982-78513001 | Msa0893710:exon | 30.0% | |
| ! | TCCATTATAGGAAGTATGTT+AGG | + | chr6_1:78512994-78513013 | Msa0893710:three_prime_UTR | 30.0% |
| ACCTAACATACTTCCTATAA+TGG | - | chr6_1:78512998-78513017 | None:intergenic | 30.0% | |
| ! | ATTATAGGAAGTATGTTAGG+TGG | + | chr6_1:78512997-78513016 | Msa0893710:three_prime_UTR | 30.0% |
| AAGGATGAGACATTATCAAT+CGG | + | chr6_1:78513043-78513062 | Msa0893710:three_prime_UTR | 30.0% | |
| ! | GTAGAATTTGTTCAAACTCG+TGG | + | chr6_1:78510463-78510482 | Msa0893710:five_prime_UTR | 35.0% |
| AGCAAATTGAACCTGAGATT+TGG | - | chr6_1:78510884-78510903 | None:intergenic | 35.0% | |
| ! | TTTCTCTTTTCTCTTTCTCC+TGG | + | chr6_1:78511030-78511049 | Msa0893710:intron | 35.0% |
| TATTGAAATTGGGTTTCTGC+AGG | + | chr6_1:78511216-78511235 | Msa0893710:intron | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | + | chr6_1:78511329-78511348 | Msa0893710:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | + | chr6_1:78511365-78511384 | Msa0893710:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | + | chr6_1:78511505-78511524 | Msa0893710:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | + | chr6_1:78511549-78511568 | Msa0893710:CDS | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | - | chr6_1:78511591-78511610 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | - | chr6_1:78511593-78511612 | None:intergenic | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | + | chr6_1:78511835-78511854 | Msa0893710:intron | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | + | chr6_1:78511967-78511986 | Msa0893710:intron | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | - | chr6_1:78512035-78512054 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | - | chr6_1:78512125-78512144 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | + | chr6_1:78512194-78512213 | Msa0893710:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | + | chr6_1:78512266-78512285 | Msa0893710:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | - | chr6_1:78512369-78512388 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | + | chr6_1:78512411-78512430 | Msa0893710:CDS | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | + | chr6_1:78512483-78512502 | Msa0893710:CDS | 35.0% |
| AGTAGAAACTACTTTCAGCA+AGG | + | chr6_1:78512616-78512635 | Msa0893710:intron | 35.0% | |
| ! | ATTTAAGACATGGGCTAAGT+GGG | + | chr6_1:78512687-78512706 | Msa0893710:CDS | 35.0% |
| !! | GGTGTAACAAACTTTTGAGA+AGG | + | chr6_1:78513024-78513043 | Msa0893710:three_prime_UTR | 35.0% |
| AGGATGAGACATTATCAATC+GGG | + | chr6_1:78513044-78513063 | Msa0893710:three_prime_UTR | 35.0% | |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | + | chr6_1:78510477-78510496 | Msa0893710:five_prime_UTR | 40.0% |
| ! | GTCTTTTAAGCTCGGATTTG+TGG | + | chr6_1:78510485-78510504 | Msa0893710:five_prime_UTR | 40.0% |
| CTACTGTTATGCCAAATCTC+AGG | + | chr6_1:78510870-78510889 | Msa0893710:CDS | 40.0% | |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | + | chr6_1:78510891-78510910 | Msa0893710:intron | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | - | chr6_1:78510907-78510926 | None:intergenic | 40.0% |
| AATATGAGCATCACAACACC+AGG | - | chr6_1:78511051-78511070 | None:intergenic | 40.0% | |
| GCAAACCCTATGAATCTGAA+GGG | + | chr6_1:78511238-78511257 | Msa0893710:CDS | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | + | chr6_1:78511239-78511258 | Msa0893710:CDS | 40.0% | |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | + | chr6_1:78511489-78511508 | Msa0893710:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | + | chr6_1:78511612-78511631 | Msa0893710:CDS | 40.0% | |
| !!! | TGATTTGCCTTTTTTGTGGG+TGG | + | chr6_1:78511710-78511729 | Msa0893710:intron | 40.0% |
| TGAAATGCCACCCACAAAAA+AGG | - | chr6_1:78511720-78511739 | None:intergenic | 40.0% | |
| TTAGGGCTCAATTCCTTCAA+TGG | + | chr6_1:78511863-78511882 | Msa0893710:intron | 40.0% | |
| TCAATTCCTTCAATGGAGAG+AGG | + | chr6_1:78511870-78511889 | Msa0893710:intron | 40.0% | |
| ACAGGTTTGTGTTAGGATGT+TGG | + | chr6_1:78512218-78512237 | Msa0893710:intron | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | + | chr6_1:78512232-78512251 | Msa0893710:intron | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | - | chr6_1:78512351-78512370 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | + | chr6_1:78512366-78512385 | Msa0893710:CDS | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | - | chr6_1:78512416-78512435 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | + | chr6_1:78512486-78512505 | Msa0893710:CDS | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | + | chr6_1:78512686-78512705 | Msa0893710:CDS | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | + | chr6_1:78512853-78512872 | Msa0893710:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | + | chr6_1:78512854-78512873 | Msa0893710:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | + | chr6_1:78512855-78512874 | Msa0893710:intron | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | + | chr6_1:78512886-78512905 | Msa0893710:CDS | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | + | chr6_1:78512887-78512906 | Msa0893710:CDS | 40.0% |
| TGCAGCATATCCATTGACAA+CGG | + | chr6_1:78512942-78512961 | Msa0893710:CDS | 40.0% | |
| GGATGAGACATTATCAATCG+GGG | + | chr6_1:78513045-78513064 | Msa0893710:three_prime_UTR | 40.0% | |
| GTGGTCTCTTACTCTCTGAT+TGG | + | chr6_1:78510504-78510523 | Msa0893710:five_prime_UTR | 45.0% | |
| GGCAAACCCTATGAATCTGA+AGG | + | chr6_1:78511237-78511256 | Msa0893710:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | - | chr6_1:78511246-78511265 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | + | chr6_1:78511375-78511394 | Msa0893710:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | + | chr6_1:78511378-78511397 | Msa0893710:intron | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | + | chr6_1:78511562-78511581 | Msa0893710:CDS | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | + | chr6_1:78511845-78511864 | Msa0893710:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | + | chr6_1:78511846-78511865 | Msa0893710:intron | 45.0% |
| ! | CCAGTGTTGTTAATCACGGA+TGG | - | chr6_1:78512031-78512050 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | + | chr6_1:78512028-78512047 | Msa0893710:intron | 45.0% | |
| AGGACATGACTAAGACAGCA+TGG | - | chr6_1:78512089-78512108 | None:intergenic | 45.0% | |
| GTCTTAGTCATGTCCTTGCA+TGG | + | chr6_1:78512093-78512112 | Msa0893710:intron | 45.0% | |
| ! | TGACTGTAATTTGGTGGGAC+AGG | + | chr6_1:78512200-78512219 | Msa0893710:intron | 45.0% |
| TGATAGCAAGCACACGTACA+AGG | + | chr6_1:78512723-78512742 | Msa0893710:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | + | chr6_1:78512724-78512743 | Msa0893710:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | + | chr6_1:78512737-78512756 | Msa0893710:intron | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | + | chr6_1:78512856-78512875 | Msa0893710:intron | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | + | chr6_1:78512888-78512907 | Msa0893710:CDS | 45.0% |
| GCAGCATATCCATTGACAAC+GGG | + | chr6_1:78512943-78512962 | Msa0893710:CDS | 45.0% | |
| TCGACAATTCCCGTTGTCAA+TGG | - | chr6_1:78512955-78512974 | None:intergenic | 45.0% | |
| ! | GGAAGTATGTTAGGTGGTGT+TGG | + | chr6_1:78513003-78513022 | Msa0893710:three_prime_UTR | 45.0% |
| GAAGCTTTGCGTTGCTGGAA+GGG | - | chr6_1:78510387-78510406 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | - | chr6_1:78510388-78510407 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | - | chr6_1:78510392-78510411 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | - | chr6_1:78511247-78511266 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | + | chr6_1:78511270-78511289 | Msa0893710:CDS | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | + | chr6_1:78511561-78511580 | Msa0893710:CDS | 50.0% | |
| CACTCTCCTCTCTCCATTGA+AGG | - | chr6_1:78511879-78511898 | None:intergenic | 50.0% | |
| CTTCAATGGAGAGAGGAGAG+TGG | + | chr6_1:78511877-78511896 | Msa0893710:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | + | chr6_1:78511888-78511907 | Msa0893710:intron | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | + | chr6_1:78511935-78511954 | Msa0893710:intron | 50.0% |
| AGGATGGAAGACACCATGCA+AGG | - | chr6_1:78512109-78512128 | None:intergenic | 50.0% | |
| TGGTGGGACAGGTTTGTGTT+AGG | + | chr6_1:78512211-78512230 | Msa0893710:intron | 50.0% | |
| !! | CGTGTGCTTGCTATCAACTG+TGG | - | chr6_1:78512719-78512738 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | + | chr6_1:78512857-78512876 | Msa0893710:intron | 50.0% | |
| GTTGTCGAACGCTGGTGGAA+CGG | - | chr6_1:78510355-78510374 | None:intergenic | 55.0% | |
| GATGAGCAGTTGTCGAACGC+TGG | - | chr6_1:78510363-78510382 | None:intergenic | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | + | chr6_1:78512861-78512880 | Msa0893710:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | + | chr6_1:78512862-78512881 | Msa0893710:intron | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | + | chr6_1:78512863-78512882 | Msa0893710:intron | 55.0% | |
| GAGCAGTTGTCGAACGCTGG+TGG | - | chr6_1:78510360-78510379 | None:intergenic | 60.0% | |
| GTCGAACGCTGGTGGAACGG+CGG | - | chr6_1:78510352-78510371 | None:intergenic | 65.0% | |
| !! | GCGGTGGAGCGGTGGTGGAA+CGG | - | chr6_1:78510333-78510352 | None:intergenic | 70.0% |
| CTGGTGGAACGGCGGTGGAG+CGG | - | chr6_1:78510344-78510363 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | - | chr6_1:78510349-78510368 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | + | chr6_1:78512871-78512890 | Msa0893710:intron | 70.0% | |
| GAACGGCGGTGGAGCGGTGG+TGG | - | chr6_1:78510338-78510357 | None:intergenic | 75.0% | |
| GTGGAACGGCGGTGGAGCGG+TGG | - | chr6_1:78510341-78510360 | None:intergenic | 75.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | + | chr6_1:78512874-78512893 | Msa0893710:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 78510265 | 78513222 | 78510265 | ID=Msa0893710;Name=Msa0893710 |
| chr6_1 | mRNA | 78510265 | 78513222 | 78510265 | ID=Msa0893710-mRNA-1;Parent=Msa0893710;Name=Msa0893710-mRNA-1;_AED=0.27;_eAED=0.27;_QI=281|0.57|0.75|0.87|0.71|0.62|8|229|222 |
| chr6_1 | exon | 78510265 | 78510525 | 78510265 | ID=Msa0893710-mRNA-1:exon:13093;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78510709 | 78510759 | 78510709 | ID=Msa0893710-mRNA-1:exon:13094;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78510869 | 78510891 | 78510869 | ID=Msa0893710-mRNA-1:exon:13095;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78511238 | 78511291 | 78511238 | ID=Msa0893710-mRNA-1:exon:13096;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78511511 | 78511633 | 78511511 | ID=Msa0893710-mRNA-1:exon:13097;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78512335 | 78512531 | 78512335 | ID=Msa0893710-mRNA-1:exon:13098;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78512618 | 78512737 | 78512618 | ID=Msa0893710-mRNA-1:exon:13099;Parent=Msa0893710-mRNA-1 |
| chr6_1 | exon | 78512873 | 78513222 | 78512873 | ID=Msa0893710-mRNA-1:exon:13100;Parent=Msa0893710-mRNA-1 |
| chr6_1 | five_prime_UTR | 78510265 | 78510525 | 78510265 | ID=Msa0893710-mRNA-1:five_prime_utr;Parent=Msa0893710-mRNA-1 |
| chr6_1 | five_prime_UTR | 78510709 | 78510728 | 78510709 | ID=Msa0893710-mRNA-1:five_prime_utr;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78510729 | 78510759 | 78510729 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78510869 | 78510891 | 78510869 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78511238 | 78511291 | 78511238 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78511511 | 78511633 | 78511511 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78512335 | 78512531 | 78512335 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78512618 | 78512737 | 78512618 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | CDS | 78512873 | 78512993 | 78512873 | ID=Msa0893710-mRNA-1:cds;Parent=Msa0893710-mRNA-1 |
| chr6_1 | three_prime_UTR | 78512994 | 78513222 | 78512994 | ID=Msa0893710-mRNA-1:three_prime_utr;Parent=Msa0893710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
