Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577520 | XP_013446593.2 | 98.667 | 525 | 7 | 0 | 1 | 525 | 23 | 547 | 0.0 | 1067 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577520 | sp|A0A1P8B760|AMI4G_ARATH | 60.744 | 484 | 176 | 5 | 30 | 508 | 34 | 508 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577520 | A0A072U452 | 98.667 | 525 | 7 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1064 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563820 | Msa0577520 | 0.845043 | 5.193936e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577520 | MtrunA17_Chr8g0377651 | 98.667 | 525 | 7 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1064 |
| Msa0577520 | MtrunA17_Chr8g0377641 | 87.041 | 517 | 63 | 3 | 3 | 517 | 1 | 515 | 0.0 | 924 |
| Msa0577520 | MtrunA17_Chr8g0377701 | 84.854 | 515 | 73 | 2 | 3 | 513 | 1 | 514 | 0.0 | 889 |
| Msa0577520 | MtrunA17_Chr8g0377691 | 84.333 | 517 | 75 | 2 | 3 | 515 | 1 | 515 | 0.0 | 883 |
| Msa0577520 | MtrunA17_Chr8g0377681 | 83.074 | 514 | 80 | 3 | 7 | 515 | 2 | 513 | 0.0 | 870 |
| Msa0577520 | MtrunA17_Chr4g0037521 | 60.619 | 485 | 182 | 7 | 31 | 508 | 25 | 507 | 0.0 | 570 |
| Msa0577520 | MtrunA17_Chr4g0037491 | 57.705 | 305 | 115 | 7 | 205 | 499 | 1 | 301 | 1.23e-112 | 336 |
| Msa0577520 | MtrunA17_Chr8g0377661 | 88.750 | 80 | 9 | 0 | 438 | 517 | 1 | 80 | 1.16e-42 | 146 |
| Msa0577520 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 105 | 196 | 2 | 95 | 6.26e-31 | 115 |
| Msa0577520 | MtrunA17_Chr8g0385461 | 32.558 | 258 | 157 | 7 | 32 | 287 | 154 | 396 | 7.37e-29 | 120 |
| Msa0577520 | MtrunA17_Chr3g0097801 | 25.000 | 540 | 320 | 14 | 22 | 500 | 5 | 520 | 1.22e-26 | 113 |
| Msa0577520 | MtrunA17_Chr2g0279961 | 25.203 | 492 | 303 | 12 | 41 | 500 | 130 | 588 | 1.41e-21 | 98.6 |
| Msa0577520 | MtrunA17_Chr3g0130801 | 30.588 | 255 | 163 | 8 | 40 | 288 | 200 | 446 | 1.94e-15 | 79.3 |
| Msa0577520 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 2 | 140 | 257 | 63 | 176 | 2.32e-14 | 75.1 |
| Msa0577520 | MtrunA17_Chr8g0384851 | 28.906 | 256 | 165 | 6 | 26 | 271 | 117 | 365 | 9.53e-13 | 70.9 |
| Msa0577520 | MtrunA17_Chr4g0050371 | 37.190 | 121 | 70 | 2 | 138 | 257 | 107 | 222 | 1.78e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577520 | AT4G34880.2 | 60.744 | 484 | 176 | 5 | 30 | 508 | 34 | 508 | 0.0 | 561 |
| Msa0577520 | AT4G34880.1 | 53.623 | 483 | 166 | 6 | 30 | 508 | 34 | 462 | 5.81e-173 | 496 |
| Msa0577520 | AT5G07360.1 | 33.068 | 251 | 155 | 6 | 33 | 281 | 197 | 436 | 1.89e-27 | 117 |
| Msa0577520 | AT5G07360.3 | 33.068 | 251 | 155 | 6 | 33 | 281 | 197 | 436 | 1.89e-27 | 117 |
| Msa0577520 | AT3G25660.1 | 32.095 | 296 | 184 | 7 | 51 | 340 | 56 | 340 | 1.06e-24 | 108 |
| Msa0577520 | AT5G07360.2 | 32.669 | 251 | 149 | 7 | 33 | 281 | 197 | 429 | 2.71e-24 | 107 |
| Msa0577520 | AT5G64440.1 | 24.802 | 504 | 318 | 15 | 35 | 508 | 125 | 597 | 1.61e-21 | 98.6 |
| Msa0577520 | AT1G08980.1 | 38.931 | 131 | 71 | 3 | 140 | 266 | 64 | 189 | 1.38e-15 | 79.3 |
| Msa0577520 | AT5G09420.1 | 38.655 | 119 | 63 | 3 | 138 | 253 | 105 | 216 | 1.66e-11 | 67.4 |
Find 133 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATATACCGACCAATTT+TGG | 0.122914 | 4_1:-81864410 | None:intergenic |
| TGAGACCAACTGTTGGTTTA+AGG | 0.180487 | 4_1:-81862223 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:+81861037 | Msa0577520:CDS |
| GGTGAACTTCTCAACATTAA+TGG | 0.195696 | 4_1:-81865028 | None:intergenic |
| AAAGCTGGTGCTATCATATT+AGG | 0.197346 | 4_1:+81861167 | Msa0577520:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 4_1:-81860878 | None:intergenic |
| GCATTAATCTTGAGCATTAA+TGG | 0.202529 | 4_1:+81864910 | Msa0577520:three_prime_UTR |
| GAGCCATTTGGAATTTGTTT+TGG | 0.235593 | 4_1:+81864754 | Msa0577520:CDS |
| GTGAAGCTACTAAATCTTTC+AGG | 0.241049 | 4_1:-81864343 | None:intergenic |
| ATGTCAAGATGGTCAGAAAA+TGG | 0.249306 | 4_1:+81864607 | Msa0577520:CDS |
| TATAAAATTGTAGGAGAAAA+TGG | 0.263811 | 4_1:+81864507 | Msa0577520:intron |
| GCTGAAAAGACAAACGGTTT+TGG | 0.268880 | 4_1:+81864556 | Msa0577520:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 4_1:-81862266 | None:intergenic |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4_1:+81861201 | Msa0577520:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:-81862578 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4_1:-81860966 | None:intergenic |
| CAGGCAAAGAGGTGCAGTTT+TGG | 0.328515 | 4_1:+81864223 | Msa0577520:intron |
| TGTGTTGAAGCCATCTTATT+TGG | 0.331353 | 4_1:-81865049 | None:intergenic |
| ATACAAAACCCAGTTCTAAA+AGG | 0.340481 | 4_1:+81860927 | Msa0577520:CDS |
| AGGAGAATGTAACTAGTATA+AGG | 0.343336 | 4_1:-81860767 | None:intergenic |
| AAGGCCTGAAGGGCATAAAA+TGG | 0.343475 | 4_1:-81862186 | None:intergenic |
| GTGAACTTCTCAACATTAAT+GGG | 0.348269 | 4_1:-81865027 | None:intergenic |
| CCCAGTTCTAAAAGGAATCT+TGG | 0.351151 | 4_1:+81860935 | Msa0577520:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.352871 | 4_1:-81862275 | None:intergenic |
| TTGATGTTAATTGGTTTCTC+TGG | 0.358585 | 4_1:-81860869 | None:intergenic |
| AAACACCAAGTTCTCTTTCA+AGG | 0.367223 | 4_1:+81861015 | Msa0577520:CDS |
| GTGTTATCCTTAACCAAAAT+AGG | 0.372541 | 4_1:-81861050 | None:intergenic |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 4_1:-81862274 | None:intergenic |
| GTGAGATACTACTACGAGTT+TGG | 0.381127 | 4_1:+81862641 | Msa0577520:CDS |
| CAATGAGAAACACCCAAAAT+TGG | 0.384496 | 4_1:+81864397 | Msa0577520:CDS |
| TTTAGCCACATACTGGCTAT+TGG | 0.398364 | 4_1:+81864688 | Msa0577520:CDS |
| TCTGATACAGTCCTACAAAT+TGG | 0.399411 | 4_1:-81862479 | None:intergenic |
| CTGGCTATTGGAGGTTATCC+TGG | 0.400039 | 4_1:+81864700 | Msa0577520:CDS |
| TATGAAAAGGGTGAGCCATT+TGG | 0.400795 | 4_1:+81864742 | Msa0577520:CDS |
| AATATCAGTAGCAGCAAATC+TGG | 0.401868 | 4_1:+81862130 | Msa0577520:CDS |
| TAAGGATAACACTGCAACTA+AGG | 0.409299 | 4_1:+81861061 | Msa0577520:CDS |
| TTGTAATTTCCAACTTCCTA+AGG | 0.412883 | 4_1:-81864858 | None:intergenic |
| TTGTAGGAGAAAATGGAGTA+TGG | 0.417039 | 4_1:+81864514 | Msa0577520:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:-81864796 | None:intergenic |
| AGCACCAGCTTTCCTTAACT+TGG | 0.417639 | 4_1:-81861156 | None:intergenic |
| AGCTTCACCGGTGAACAGTT+TGG | 0.420459 | 4_1:+81864358 | Msa0577520:CDS |
| CAGCTTGCACCAATACATCT+TGG | 0.421918 | 4_1:-81864537 | None:intergenic |
| AAGCTGGTGCTATCATATTA+GGG | 0.437374 | 4_1:+81861168 | Msa0577520:CDS |
| ATGTGGCTAAAGGACCAAAA+AGG | 0.440108 | 4_1:-81864676 | None:intergenic |
| TACAGGTCTAGTAAAGTTCC+TGG | 0.443202 | 4_1:+81861218 | Msa0577520:CDS |
| TGGCTTCAACACAAATAAGT+TGG | 0.444416 | 4_1:+81864930 | Msa0577520:three_prime_UTR |
| CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4_1:-81862086 | None:intergenic |
| TTGGTCCTTTAGCCACATAC+TGG | 0.448388 | 4_1:+81864681 | Msa0577520:CDS |
| GCCACCTCCCCTTAGGAAGT+TGG | 0.450869 | 4_1:+81864849 | Msa0577520:CDS |
| GAATTTGCTTGCTCAAATAG+TGG | 0.452117 | 4_1:+81864972 | Msa0577520:three_prime_UTR |
| ATGTAACTAGTATAAGGAAT+TGG | 0.457413 | 4_1:-81860761 | None:intergenic |
| TAAGGCCCACCACTGAGTTA+AGG | 0.459410 | 4_1:-81862205 | None:intergenic |
| AATAGTGGCTTTCTAATAAG+AGG | 0.460688 | 4_1:+81864987 | Msa0577520:three_prime_UTR |
| GAGAAGTTCACCAAATAAGA+TGG | 0.461855 | 4_1:+81865039 | Msa0577520:three_prime_UTR |
| AAGTTGGAAATTGCTTATCC+TGG | 0.462270 | 4_1:+81864946 | Msa0577520:three_prime_UTR |
| GTTGGAAATTACAAATAAGA+TGG | 0.469844 | 4_1:+81864867 | Msa0577520:CDS |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:+81862273 | Msa0577520:CDS |
| TTCAGGCCTTAACTCAGTGG+TGG | 0.475317 | 4_1:+81862199 | Msa0577520:CDS |
| GGACTAAGAGGAAAGAGATT+AGG | 0.477099 | 4_1:+81862614 | Msa0577520:CDS |
| GATTGAGAATTCACTGGCCA+AGG | 0.482825 | 4_1:-81860811 | None:intergenic |
| TGTCAAGATGGTCAGAAAAT+GGG | 0.483186 | 4_1:+81864608 | Msa0577520:CDS |
| TGCAACCTTGAAAGAGAACT+TGG | 0.486425 | 4_1:-81861020 | None:intergenic |
| TCCAACTTCCTAAGGGGAGG+TGG | 0.486904 | 4_1:-81864850 | None:intergenic |
| CTAGTAAAGTTCCTGGTGGT+TGG | 0.493749 | 4_1:+81861225 | Msa0577520:CDS |
| TTCCTTGATTGAGAATTCAC+TGG | 0.494928 | 4_1:-81860817 | None:intergenic |
| TGTAATTTCCAACTTCCTAA+GGG | 0.496080 | 4_1:-81864857 | None:intergenic |
| TCAGAAAGCCACCTCCCCTT+AGG | 0.498866 | 4_1:+81864842 | Msa0577520:CDS |
| CTCACTACTCTACTCAAAGT+TGG | 0.500986 | 4_1:+81865181 | Msa0577520:three_prime_UTR |
| CAGGTGTGATTACCAAGTTA+AGG | 0.501029 | 4_1:+81861144 | Msa0577520:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4_1:+81864729 | Msa0577520:CDS |
| GTAATCACACCTGCATCTCT+TGG | 0.508503 | 4_1:-81861134 | None:intergenic |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 4_1:-81864757 | None:intergenic |
| GGCCAGTGAATTCTCAATCA+AGG | 0.515296 | 4_1:+81860815 | Msa0577520:CDS |
| CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4_1:+81862602 | Msa0577520:CDS |
| TCAGTCGTGCCAAGAGATGC+AGG | 0.516688 | 4_1:+81861125 | Msa0577520:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:+81862563 | Msa0577520:CDS |
| TAAAGCTGACCAAGAGAGAA+GGG | 0.520548 | 4_1:+81860989 | Msa0577520:CDS |
| AAAAGTGTCGATGCCTGCTA+TGG | 0.521373 | 4_1:-81862522 | None:intergenic |
| GGAGTATGGCCAAGATGTAT+TGG | 0.522951 | 4_1:+81864528 | Msa0577520:CDS |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:+81861023 | Msa0577520:CDS |
| GGTTTCATCACTCATGGTCA+TGG | 0.524958 | 4_1:+81860713 | None:intergenic |
| AGCCACATACTGGCTATTGG+AGG | 0.525826 | 4_1:+81864691 | Msa0577520:CDS |
| AATAGCCAGTATGTGGCTAA+AGG | 0.528869 | 4_1:-81864686 | None:intergenic |
| TGGGAAGGTTTCATCACTCA+TGG | 0.535187 | 4_1:+81860707 | None:intergenic |
| TGAGCAAGCAAATTCACTCC+AGG | 0.535659 | 4_1:-81864964 | None:intergenic |
| ATTACCAAGTTAAGGAAAGC+TGG | 0.537797 | 4_1:+81861152 | Msa0577520:CDS |
| TAGAAATAACAAATCTGTCA+AGG | 0.539464 | 4_1:-81865081 | None:intergenic |
| CCACTGAGTTAAGGCCTGAA+GGG | 0.544901 | 4_1:-81862196 | None:intergenic |
| GTGCAAGCTGAAAAGACAAA+CGG | 0.546352 | 4_1:+81864550 | Msa0577520:CDS |
| GATAGATTGAACACTACTGC+TGG | 0.550587 | 4_1:+81861083 | Msa0577520:CDS |
| GAAAGATTTAGTAGCTTCAC+CGG | 0.550684 | 4_1:+81864346 | Msa0577520:CDS |
| TTCAAAGCAATAGATTCACT+TGG | 0.552004 | 4_1:-81864290 | None:intergenic |
| GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4_1:+81862101 | Msa0577520:CDS |
| TGTGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:+81862509 | Msa0577520:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:+81862272 | Msa0577520:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:+81862236 | Msa0577520:CDS |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.563245 | 4_1:+81861250 | Msa0577520:CDS |
| TCAGGCCTTAACTCAGTGGT+GGG | 0.564541 | 4_1:+81862200 | Msa0577520:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 4_1:+81861189 | Msa0577520:CDS |
| GTTGAAATTATCAGGCAAAG+AGG | 0.565242 | 4_1:+81864212 | Msa0577520:intron |
| AGAAATAACAAATCTGTCAA+GGG | 0.566620 | 4_1:-81865080 | None:intergenic |
| ACCACTGAGTTAAGGCCTGA+AGG | 0.569080 | 4_1:-81862197 | None:intergenic |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.580983 | 4_1:+81860988 | Msa0577520:CDS |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:+81862593 | Msa0577520:CDS |
| CCCTTCAGGCCTTAACTCAG+TGG | 0.586720 | 4_1:+81862196 | Msa0577520:CDS |
| AACCTCCAATAGCCAGTATG+TGG | 0.588183 | 4_1:-81864693 | None:intergenic |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4_1:-81864718 | None:intergenic |
| CCTCTAGCATTCCAACCACC+AGG | 0.589318 | 4_1:-81861236 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4_1:+81864730 | Msa0577520:CDS |
| CATTATTGAATATGTCAAGA+TGG | 0.595401 | 4_1:+81864596 | Msa0577520:CDS |
| ACATCTGCCAAACTGTTCAC+CGG | 0.595656 | 4_1:-81864365 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4_1:-81861195 | None:intergenic |
| TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4_1:+81862106 | Msa0577520:CDS |
| AGTGGCTTTCTAATAAGAGG+TGG | 0.607310 | 4_1:+81864990 | Msa0577520:three_prime_UTR |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4_1:+81864718 | Msa0577520:CDS |
| ATTTCCAACTTCCTAAGGGG+AGG | 0.618968 | 4_1:-81864853 | None:intergenic |
| TGGTGCTATCATATTAGGGA+AGG | 0.623587 | 4_1:+81861172 | Msa0577520:CDS |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:-81862177 | None:intergenic |
| GTAATTTCCAACTTCCTAAG+GGG | 0.629814 | 4_1:-81864856 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:+81862566 | Msa0577520:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:-81862230 | None:intergenic |
| CCTGGTGGTTGGAATGCTAG+AGG | 0.631226 | 4_1:+81861236 | Msa0577520:CDS |
| GTGGGCCTTAAACCAACAGT+TGG | 0.632543 | 4_1:+81862218 | Msa0577520:CDS |
| AGTTCTAAAAGGAATCTTGG+AGG | 0.634898 | 4_1:+81860938 | Msa0577520:CDS |
| TGGAATGCTAGAGGTGGACA+AGG | 0.642036 | 4_1:+81861245 | Msa0577520:CDS |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 4_1:+81862258 | Msa0577520:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.659008 | 4_1:+81862089 | Msa0577520:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.673696 | 4_1:+81862076 | Msa0577520:intron |
| AATCTGGTTACTGTGTCACT+TGG | 0.676515 | 4_1:+81862146 | Msa0577520:CDS |
| GGTGGTTGGAATGCTAGAGG+TGG | 0.689775 | 4_1:+81861239 | Msa0577520:CDS |
| AGGTCTAGTAAAGTTCCTGG+TGG | 0.700262 | 4_1:+81861221 | Msa0577520:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:+81862161 | Msa0577520:CDS |
| GATCCACTACTTGAACCACA+AGG | 0.767744 | 4_1:-81862104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTCTTTAGAAAAAAT+AGG | + | chr4_1:81865205-81865224 | Msa0577520:three_prime_UTR | 10.0% |
| !!! | TAATTTCTTTAGAAAAAATA+GGG | + | chr4_1:81865206-81865225 | Msa0577520:three_prime_UTR | 10.0% |
| !!! | TTTTAGGTATAATTGATTTT+GGG | + | chr4_1:81861721-81861740 | Msa0577520:intron | 15.0% |
| !!! | AGTAAATAATTTTTTTTTCG+AGG | + | chr4_1:81861960-81861979 | Msa0577520:intron | 15.0% |
| !! | ACATAAAAAAATGAGTAAAT+AGG | - | chr4_1:81862403-81862422 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr4_1:81863359-81863378 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr4_1:81863358-81863377 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr4_1:81863359-81863378 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr4_1:81863358-81863377 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr4_1:81863358-81863377 | Msa0577520:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr4_1:81863359-81863378 | Msa0577520:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr4_1:81863358-81863377 | Msa0577520:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr4_1:81863359-81863378 | Msa0577520:intron | 15.0% |
| !! | TATAGTATAAATATCACATT+TGG | + | chr4_1:81863653-81863672 | Msa0577520:intron | 15.0% |
| !! | AGTTTAATGTAAATGTAAAT+AGG | - | chr4_1:81863855-81863874 | None:intergenic | 15.0% |
| !! | TTATAGTTTACTACTTATTC+TGG | + | chr4_1:81861392-81861411 | Msa0577520:intron | 20.0% |
| !! | TGATTTACAATTAGGTAAAT+TGG | - | chr4_1:81861452-81861471 | None:intergenic | 20.0% |
| !!! | TTCTTTGTTGATTTACAATT+AGG | - | chr4_1:81861460-81861479 | None:intergenic | 20.0% |
| !!! | CAAAACTGATTTTTTGAAAT+CGG | + | chr4_1:81861536-81861555 | Msa0577520:intron | 20.0% |
| !!! | CTTTTAGGTATAATTGATTT+TGG | + | chr4_1:81861720-81861739 | Msa0577520:intron | 20.0% |
| !! | TAGTAATTGTGTAACATTAA+TGG | + | chr4_1:81862440-81862459 | Msa0577520:intron | 20.0% |
| !! | AATACTAATCTATGTATATG+AGG | - | chr4_1:81862765-81862784 | None:intergenic | 20.0% |
| !!! | TCATTGTCTATTATTTTCTT+TGG | + | chr4_1:81862839-81862858 | Msa0577520:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr4_1:81863161-81863180 | Msa0577520:intron | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | - | chr4_1:81863217-81863236 | None:intergenic | 20.0% |
| !! | GAAAACTAAAATAAACACAA+GGG | - | chr4_1:81863278-81863297 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACACA+AGG | - | chr4_1:81863279-81863298 | None:intergenic | 20.0% |
| !!! | TGTGTTTATTTTAGTTTTCA+AGG | + | chr4_1:81863279-81863298 | Msa0577520:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr4_1:81863161-81863180 | Msa0577520:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | - | chr4_1:81863161-81863180 | None:intergenic | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | + | chr4_1:81863417-81863436 | Msa0577520:intron | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | + | chr4_1:81863418-81863437 | Msa0577520:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr4_1:81863161-81863180 | None:intergenic | 20.0% |
| !! | AATTAAACTGTCCAAAATTT+GGG | + | chr4_1:81863753-81863772 | Msa0577520:intron | 20.0% |
| !! | ACATTTACATTAAACTATGT+TGG | + | chr4_1:81863859-81863878 | Msa0577520:intron | 20.0% |
| !!! | TATAGTAGAAAGTATAAGAA+GGG | + | chr4_1:81863930-81863949 | Msa0577520:intron | 20.0% |
| !! | AACAATGTTATCAATTGATA+GGG | - | chr4_1:81864195-81864214 | None:intergenic | 20.0% |
| !! | ATAACATTGTTGAAATTATC+AGG | + | chr4_1:81864204-81864223 | Msa0577520:intron | 20.0% |
| !! | GAATTGTTGTATAAAATTGT+AGG | + | chr4_1:81864498-81864517 | Msa0577520:intron | 20.0% |
| !! | TATAAAATTGTAGGAGAAAA+TGG | + | chr4_1:81864507-81864526 | Msa0577520:intron | 20.0% |
| ! | ATGTAACTAGTATAAGGAAT+TGG | - | chr4_1:81860764-81860783 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTGATTTGGTTG+AGG | - | chr4_1:81860914-81860933 | None:intergenic | 25.0% |
| !! | CTACTTACTTAATTTGAGTT+TGG | + | chr4_1:81861283-81861302 | Msa0577520:intron | 25.0% |
| !! | CAATTTTTGTCTGTATAGTT+TGG | + | chr4_1:81861624-81861643 | Msa0577520:intron | 25.0% |
| ! | ATGTCAATAAGTTTGAGAAT+TGG | + | chr4_1:81861666-81861685 | Msa0577520:intron | 25.0% |
| !!! | AAGCTAGAAATTTAGCTTTT+AGG | + | chr4_1:81861705-81861724 | Msa0577520:intron | 25.0% |
| ! | AACGTGATTTGACTATAAAT+TGG | - | chr4_1:81861782-81861801 | None:intergenic | 25.0% |
| !! | TGAGGCATTATTAGAAAAAT+AGG | + | chr4_1:81861926-81861945 | Msa0577520:intron | 25.0% |
| ! | GATAATCAAGTCATTTCTTT+AGG | - | chr4_1:81861986-81862005 | None:intergenic | 25.0% |
| ! | TAAAGTTCCAATAAGAAGAA+GGG | - | chr4_1:81862009-81862028 | None:intergenic | 25.0% |
| ! | ATGAATGATTCTTGAAAATG+AGG | + | chr4_1:81862031-81862050 | Msa0577520:intron | 25.0% |
| !! | TTACCATTTTGCAAATTCAA+TGG | + | chr4_1:81862337-81862356 | Msa0577520:intron | 25.0% |
| !! | GTAATTACCTTAACGTTTTT+AGG | - | chr4_1:81862703-81862722 | None:intergenic | 25.0% |
| ! | TGATTTCTCCTATATAATTG+TGG | - | chr4_1:81862865-81862884 | None:intergenic | 25.0% |
| ! | TAATAATAAACAACTCCCAA+AGG | - | chr4_1:81862924-81862943 | None:intergenic | 25.0% |
| ! | TGGGAGTTGTTTATTATTAT+CGG | + | chr4_1:81862925-81862944 | Msa0577520:intron | 25.0% |
| ! | ATGCTAATAATAACATGTCT+TGG | + | chr4_1:81863031-81863050 | Msa0577520:intron | 25.0% |
| ! | TAGATACGTTAACAATGTAA+AGG | + | chr4_1:81863113-81863132 | Msa0577520:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr4_1:81863388-81863407 | None:intergenic | 25.0% |
| !!! | CTTGAAACTTTTAAAACGTA+AGG | - | chr4_1:81863218-81863237 | None:intergenic | 25.0% |
| !!! | ACGTTTTAAAAGTTTCAAGT+TGG | + | chr4_1:81863219-81863238 | Msa0577520:intron | 25.0% |
| !!! | GTTTATTTTAGTTTTCAAGG+TGG | + | chr4_1:81863282-81863301 | Msa0577520:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr4_1:81863388-81863407 | Msa0577520:intron | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | - | chr4_1:81863415-81863434 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr4_1:81863388-81863407 | Msa0577520:intron | 25.0% |
| !!! | CATATTTTTTTGACAAACCA+CGG | + | chr4_1:81863574-81863593 | Msa0577520:intron | 25.0% |
| !!! | TCATGTGTTGATAACTTAAT+CGG | + | chr4_1:81863709-81863728 | Msa0577520:intron | 25.0% |
| ! | CAATTAAACTGTCCAAAATT+TGG | + | chr4_1:81863752-81863771 | Msa0577520:intron | 25.0% |
| ! | ATTAAACTGTCCAAAATTTG+GGG | + | chr4_1:81863754-81863773 | Msa0577520:intron | 25.0% |
| ! | GAATTTGAAGATTGATGTTA+AGG | + | chr4_1:81863881-81863900 | Msa0577520:intron | 25.0% |
| !! | GTATAGTAGAAAGTATAAGA+AGG | + | chr4_1:81863929-81863948 | Msa0577520:intron | 25.0% |
| ! | TTTAGTTAGTTAGAAATCAG+AGG | + | chr4_1:81864014-81864033 | Msa0577520:intron | 25.0% |
| ! | CAACAATGTTATCAATTGAT+AGG | - | chr4_1:81864196-81864215 | None:intergenic | 25.0% |
| ! | CATTATTGAATATGTCAAGA+TGG | + | chr4_1:81864596-81864615 | Msa0577520:CDS | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr4_1:81864799-81864818 | None:intergenic | 25.0% |
| ! | GTTGGAAATTACAAATAAGA+TGG | + | chr4_1:81864867-81864886 | Msa0577520:CDS | 25.0% |
| ! | AGAAATAACAAATCTGTCAA+GGG | - | chr4_1:81865083-81865102 | None:intergenic | 25.0% |
| ! | TAGAAATAACAAATCTGTCA+AGG | - | chr4_1:81865084-81865103 | None:intergenic | 25.0% |
| AGGAGAATGTAACTAGTATA+AGG | - | chr4_1:81860770-81860789 | None:intergenic | 30.0% | |
| ! | TTGATGTTAATTGGTTTCTC+TGG | - | chr4_1:81860872-81860891 | None:intergenic | 30.0% |
| CAAGTTGTCTTGATGTTAAT+TGG | - | chr4_1:81860881-81860900 | None:intergenic | 30.0% | |
| !!! | CTGGGTTTTGTATTTTGATT+TGG | - | chr4_1:81860920-81860939 | None:intergenic | 30.0% |
| !! | ATACAAAACCCAGTTCTAAA+AGG | + | chr4_1:81860927-81860946 | Msa0577520:CDS | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4_1:81861043-81861062 | Msa0577520:CDS | 30.0% |
| GTGTTATCCTTAACCAAAAT+AGG | - | chr4_1:81861053-81861072 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTTGCCGAA+CGG | - | chr4_1:81861531-81861550 | None:intergenic | 30.0% |
| !!! | AGCTAAATTTCTAGCTTTTG+CGG | - | chr4_1:81861702-81861721 | None:intergenic | 30.0% |
| TGACTATAAATTGGTGTGTT+TGG | - | chr4_1:81861773-81861792 | None:intergenic | 30.0% | |
| ! | ACAAATTTGGAATCAAACGT+AGG | + | chr4_1:81861831-81861850 | Msa0577520:intron | 30.0% |
| AAAGTTCCAATAAGAAGAAG+GGG | - | chr4_1:81862008-81862027 | None:intergenic | 30.0% | |
| CTAAAGTTCCAATAAGAAGA+AGG | - | chr4_1:81862010-81862029 | None:intergenic | 30.0% | |
| ATTTGCAAAATGGTAACAGT+GGG | - | chr4_1:81862333-81862352 | None:intergenic | 30.0% | |
| AATTTGCAAAATGGTAACAG+TGG | - | chr4_1:81862334-81862353 | None:intergenic | 30.0% | |
| AGTCCATTGAATTTGCAAAA+TGG | - | chr4_1:81862343-81862362 | None:intergenic | 30.0% | |
| ATTGTGTAACATTAATGGTG+TGG | + | chr4_1:81862445-81862464 | Msa0577520:intron | 30.0% | |
| !!! | TTAATGGTGTGGTTTTTTAC+AGG | + | chr4_1:81862456-81862475 | Msa0577520:intron | 30.0% |
| !!! | TTTTTTACAGGCCAATTTGT+AGG | + | chr4_1:81862468-81862487 | Msa0577520:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | + | chr4_1:81862593-81862612 | Msa0577520:CDS | 30.0% |
| TTCTTTGGCCACAATTATAT+AGG | + | chr4_1:81862854-81862873 | Msa0577520:intron | 30.0% | |
| TAAAGGCTTAATTGCATGTT+TGG | + | chr4_1:81863130-81863149 | Msa0577520:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr4_1:81863387-81863406 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr4_1:81863190-81863209 | Msa0577520:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr4_1:81863387-81863406 | Msa0577520:intron | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr4_1:81863190-81863209 | None:intergenic | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr4_1:81863387-81863406 | Msa0577520:intron | 30.0% | |
| TTTGGACAGTTTAATTGTGT+TGG | - | chr4_1:81863749-81863768 | None:intergenic | 30.0% | |
| ! | TCTTGTAACTACTTCTTTTC+AGG | - | chr4_1:81863819-81863838 | None:intergenic | 30.0% |
| ! | ATGTAAATAGGTCTGAAGTA+TGG | - | chr4_1:81863843-81863862 | None:intergenic | 30.0% |
| TTCAAAGCAATAGATTCACT+TGG | - | chr4_1:81864293-81864312 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | + | chr4_1:81864766-81864785 | Msa0577520:CDS | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | + | chr4_1:81864767-81864786 | Msa0577520:CDS | 30.0% |
| TGTAATTTCCAACTTCCTAA+GGG | - | chr4_1:81864860-81864879 | None:intergenic | 30.0% | |
| TTGTAATTTCCAACTTCCTA+AGG | - | chr4_1:81864861-81864880 | None:intergenic | 30.0% | |
| GCATTAATCTTGAGCATTAA+TGG | + | chr4_1:81864910-81864929 | Msa0577520:three_prime_UTR | 30.0% | |
| AATAGTGGCTTTCTAATAAG+AGG | + | chr4_1:81864987-81865006 | Msa0577520:three_prime_UTR | 30.0% | |
| GTGAACTTCTCAACATTAAT+GGG | - | chr4_1:81865030-81865049 | None:intergenic | 30.0% | |
| TTCCTTGATTGAGAATTCAC+TGG | - | chr4_1:81860820-81860839 | None:intergenic | 35.0% | |
| !!! | CCAAGATTCCTTTTAGAACT+GGG | - | chr4_1:81860938-81860957 | None:intergenic | 35.0% |
| !!! | TCCAAGATTCCTTTTAGAAC+TGG | - | chr4_1:81860939-81860958 | None:intergenic | 35.0% |
| !! | AGTTCTAAAAGGAATCTTGG+AGG | + | chr4_1:81860938-81860957 | Msa0577520:CDS | 35.0% |
| AAACACCAAGTTCTCTTTCA+AGG | + | chr4_1:81861015-81861034 | Msa0577520:CDS | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4_1:81861037-81861056 | Msa0577520:CDS | 35.0% |
| TAAGGATAACACTGCAACTA+AGG | + | chr4_1:81861061-81861080 | Msa0577520:CDS | 35.0% | |
| ATTACCAAGTTAAGGAAAGC+TGG | + | chr4_1:81861152-81861171 | Msa0577520:CDS | 35.0% | |
| !! | AAAGCTGGTGCTATCATATT+AGG | + | chr4_1:81861167-81861186 | Msa0577520:CDS | 35.0% |
| !! | AAGCTGGTGCTATCATATTA+GGG | + | chr4_1:81861168-81861187 | Msa0577520:CDS | 35.0% |
| TTCTGGACTTCTTGTACATT+TGG | + | chr4_1:81861409-81861428 | Msa0577520:intron | 35.0% | |
| ! | CTTAGCCTTTACTCAATCTT+AGG | - | chr4_1:81861505-81861524 | None:intergenic | 35.0% |
| AATAACCCAAACTCGATTCT+GGG | + | chr4_1:81861804-81861823 | Msa0577520:intron | 35.0% | |
| CTCATAAGTTAGCGAAAAAG+GGG | - | chr4_1:81861910-81861929 | None:intergenic | 35.0% | |
| CCTCATAAGTTAGCGAAAAA+GGG | - | chr4_1:81861911-81861930 | None:intergenic | 35.0% | |
| GATTATCCCCTTCTTCTTAT+TGG | + | chr4_1:81861999-81862018 | Msa0577520:intron | 35.0% | |
| AATATCAGTAGCAGCAAATC+TGG | + | chr4_1:81862130-81862149 | Msa0577520:CDS | 35.0% | |
| TCTGATACAGTCCTACAAAT+TGG | - | chr4_1:81862482-81862501 | None:intergenic | 35.0% | |
| GCATCAAAGTATATCCCAAA+AGG | + | chr4_1:81862563-81862582 | Msa0577520:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | + | chr4_1:81862566-81862585 | Msa0577520:CDS | 35.0% | |
| ACTCACACCTAAAAACGTTA+AGG | + | chr4_1:81862693-81862712 | Msa0577520:CDS | 35.0% | |
| ! | TTTAAAACCTGTGCAACACA+TGG | + | chr4_1:81862783-81862802 | Msa0577520:intron | 35.0% |
| ATGCCTATAGACAATCCTTT+GGG | + | chr4_1:81862906-81862925 | Msa0577520:intron | 35.0% | |
| ! | TATACCAAACGTCAAGTTGT+TGG | - | chr4_1:81862951-81862970 | None:intergenic | 35.0% |
| TGTTAACGTATCTACTCTAC+TGG | - | chr4_1:81863107-81863126 | None:intergenic | 35.0% | |
| ATTGGGCTTAATTGCATGTT+TGG | - | chr4_1:81863505-81863524 | None:intergenic | 35.0% | |
| ATTGACGACAGGTTTACATT+GGG | - | chr4_1:81863522-81863541 | None:intergenic | 35.0% | |
| ! | ATGAACCTGATGACAGTTTT+TGG | + | chr4_1:81863547-81863566 | Msa0577520:intron | 35.0% |
| GATTACCAAAAACTGTCATC+AGG | - | chr4_1:81863555-81863574 | None:intergenic | 35.0% | |
| GATAACTTAATCGGAAGAGT+AGG | + | chr4_1:81863718-81863737 | Msa0577520:intron | 35.0% | |
| ! | TAGAAAGTATAAGAAGGGTG+TGG | + | chr4_1:81863935-81863954 | Msa0577520:intron | 35.0% |
| AATTGATAGGGTTGTTCACT+GGG | - | chr4_1:81864183-81864202 | None:intergenic | 35.0% | |
| GTTGAAATTATCAGGCAAAG+AGG | + | chr4_1:81864212-81864231 | Msa0577520:intron | 35.0% | |
| GTGAAGCTACTAAATCTTTC+AGG | - | chr4_1:81864346-81864365 | None:intergenic | 35.0% | |
| GAAAGATTTAGTAGCTTCAC+CGG | + | chr4_1:81864346-81864365 | Msa0577520:CDS | 35.0% | |
| !! | TTTTGGGTGTTTCTCATTGA+AGG | - | chr4_1:81864396-81864415 | None:intergenic | 35.0% |
| CAATGAGAAACACCCAAAAT+TGG | + | chr4_1:81864397-81864416 | Msa0577520:CDS | 35.0% | |
| ! | CACATATACCGACCAATTTT+GGG | - | chr4_1:81864412-81864431 | None:intergenic | 35.0% |
| ! | ACACATATACCGACCAATTT+TGG | - | chr4_1:81864413-81864432 | None:intergenic | 35.0% |
| TTGTAGGAGAAAATGGAGTA+TGG | + | chr4_1:81864514-81864533 | Msa0577520:intron | 35.0% | |
| ! | CTGAAAAGACAAACGGTTTT+GGG | + | chr4_1:81864557-81864576 | Msa0577520:CDS | 35.0% |
| ATGTCAAGATGGTCAGAAAA+TGG | + | chr4_1:81864607-81864626 | Msa0577520:CDS | 35.0% | |
| TGTCAAGATGGTCAGAAAAT+GGG | + | chr4_1:81864608-81864627 | Msa0577520:CDS | 35.0% | |
| !! | GAGCCATTTGGAATTTGTTT+TGG | + | chr4_1:81864754-81864773 | Msa0577520:CDS | 35.0% |
| CCTCCAAAACAAATTCCAAA+TGG | - | chr4_1:81864760-81864779 | None:intergenic | 35.0% | |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | + | chr4_1:81864757-81864776 | Msa0577520:CDS | 35.0% |
| GTAATTTCCAACTTCCTAAG+GGG | - | chr4_1:81864859-81864878 | None:intergenic | 35.0% | |
| TGGCTTCAACACAAATAAGT+TGG | + | chr4_1:81864930-81864949 | Msa0577520:three_prime_UTR | 35.0% | |
| AAGTTGGAAATTGCTTATCC+TGG | + | chr4_1:81864946-81864965 | Msa0577520:three_prime_UTR | 35.0% | |
| ! | GAATTTGCTTGCTCAAATAG+TGG | + | chr4_1:81864972-81864991 | Msa0577520:three_prime_UTR | 35.0% |
| GGTGAACTTCTCAACATTAA+TGG | - | chr4_1:81865031-81865050 | None:intergenic | 35.0% | |
| GAGAAGTTCACCAAATAAGA+TGG | + | chr4_1:81865039-81865058 | Msa0577520:three_prime_UTR | 35.0% | |
| TGTGTTGAAGCCATCTTATT+TGG | - | chr4_1:81864880-81864899 | None:intergenic | 35.0% | |
| !! | TTTTGGTAGCAGTAGCATAG+AGG | - | chr4_1:81860790-81860809 | None:intergenic | 40.0% |
| ! | AATTCACTGGCCAAGGTTTT+TGG | - | chr4_1:81860807-81860826 | None:intergenic | 40.0% |
| !! | CCCAGTTCTAAAAGGAATCT+TGG | + | chr4_1:81860935-81860954 | Msa0577520:CDS | 40.0% |
| ATAAAGCTGACCAAGAGAGA+AGG | + | chr4_1:81860988-81861007 | Msa0577520:CDS | 40.0% | |
| TAAAGCTGACCAAGAGAGAA+GGG | + | chr4_1:81860989-81861008 | Msa0577520:CDS | 40.0% | |
| !!! | GTGTTTTTTCCCTTCTCTCT+TGG | - | chr4_1:81861001-81861020 | None:intergenic | 40.0% |
| TGCAACCTTGAAAGAGAACT+TGG | - | chr4_1:81861023-81861042 | None:intergenic | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | + | chr4_1:81861023-81861042 | Msa0577520:CDS | 40.0% | |
| GATAGATTGAACACTACTGC+TGG | + | chr4_1:81861083-81861102 | Msa0577520:CDS | 40.0% | |
| CAGGTGTGATTACCAAGTTA+AGG | + | chr4_1:81861144-81861163 | Msa0577520:CDS | 40.0% | |
| !! | TGGTGCTATCATATTAGGGA+AGG | + | chr4_1:81861172-81861191 | Msa0577520:CDS | 40.0% |
| TACAGGTCTAGTAAAGTTCC+TGG | + | chr4_1:81861218-81861237 | Msa0577520:CDS | 40.0% | |
| ATATGTAGCTGAATCAGAGC+TGG | + | chr4_1:81861479-81861498 | Msa0577520:intron | 40.0% | |
| GAATAACCCAAACTCGATTC+TGG | + | chr4_1:81861803-81861822 | Msa0577520:intron | 40.0% | |
| ! | GATTCTGGGAGGTACAAATT+TGG | + | chr4_1:81861818-81861837 | Msa0577520:intron | 40.0% |
| CATGGCTCTTCATTTAACAC+AGG | - | chr4_1:81861879-81861898 | None:intergenic | 40.0% | |
| CTGTGTTAAATGAAGAGCCA+TGG | + | chr4_1:81861877-81861896 | Msa0577520:intron | 40.0% | |
| !! | CCCTTTTTCGCTAACTTATG+AGG | + | chr4_1:81861908-81861927 | Msa0577520:intron | 40.0% |
| GCCTCATAAGTTAGCGAAAA+AGG | - | chr4_1:81861912-81861931 | None:intergenic | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr4_1:81862076-81862095 | Msa0577520:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | - | chr4_1:81862089-81862108 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | + | chr4_1:81862089-81862108 | Msa0577520:CDS | 40.0% | |
| !! | TTGTGGTTCAAGTAGTGGAT+CGG | + | chr4_1:81862106-81862125 | Msa0577520:CDS | 40.0% |
| ! | AATCTGGTTACTGTGTCACT+TGG | + | chr4_1:81862146-81862165 | Msa0577520:CDS | 40.0% |
| !! | TGAGACCAACTGTTGGTTTA+AGG | - | chr4_1:81862226-81862245 | None:intergenic | 40.0% |
| GACCGACAGTTACAATTTCA+CGG | + | chr4_1:81862368-81862387 | Msa0577520:intron | 40.0% | |
| GTCCGTGAAATTGTAACTGT+CGG | - | chr4_1:81862373-81862392 | None:intergenic | 40.0% | |
| TGTGTTCTTGAAACCATAGC+AGG | + | chr4_1:81862509-81862528 | Msa0577520:CDS | 40.0% | |
| !!! | AGGCATCGACACTTTTGATA+AGG | + | chr4_1:81862529-81862548 | Msa0577520:CDS | 40.0% |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr4_1:81862580-81862599 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr4_1:81862581-81862600 | None:intergenic | 40.0% |
| !! | CTAAAGAAAGACGGACTAAG+AGG | + | chr4_1:81862602-81862621 | Msa0577520:CDS | 40.0% |
| GGACTAAGAGGAAAGAGATT+AGG | + | chr4_1:81862614-81862633 | Msa0577520:CDS | 40.0% | |
| GTGAGATACTACTACGAGTT+TGG | + | chr4_1:81862641-81862660 | Msa0577520:CDS | 40.0% | |
| TATCTAACCATGTGTTGCAC+AGG | - | chr4_1:81862793-81862812 | None:intergenic | 40.0% | |
| GATGCCTATAGACAATCCTT+TGG | + | chr4_1:81862905-81862924 | Msa0577520:intron | 40.0% | |
| ACTCCCAAAGGATTGTCTAT+AGG | - | chr4_1:81862912-81862931 | None:intergenic | 40.0% | |
| ! | TTCCAACATGAGCAACGTTT+TGG | - | chr4_1:81863246-81863265 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | + | chr4_1:81863328-81863347 | Msa0577520:intron | 40.0% |
| CAAGTCGGTCCAAAACATAA+GGG | - | chr4_1:81863340-81863359 | None:intergenic | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | - | chr4_1:81863341-81863360 | None:intergenic | 40.0% | |
| GATTGACGACAGGTTTACAT+TGG | - | chr4_1:81863523-81863542 | None:intergenic | 40.0% | |
| GTTCATTCAAGATTGACGAC+AGG | - | chr4_1:81863533-81863552 | None:intergenic | 40.0% | |
| TCATTTAACATGATCAGCCG+TGG | - | chr4_1:81863594-81863613 | None:intergenic | 40.0% | |
| ACTGTCCAAAATTTGGGGAA+TGG | + | chr4_1:81863759-81863778 | Msa0577520:intron | 40.0% | |
| ! | TGTCACCATTCCCCAAATTT+TGG | - | chr4_1:81863767-81863786 | None:intergenic | 40.0% |
| !! | TACTTCTTTTCAGGAGCGAT+AGG | - | chr4_1:81863810-81863829 | None:intergenic | 40.0% |
| CTACTATACGCCTGCTTAAT+GGG | - | chr4_1:81863918-81863937 | None:intergenic | 40.0% | |
| TCTACTATACGCCTGCTTAA+TGG | - | chr4_1:81863919-81863938 | None:intergenic | 40.0% | |
| ! | AAAGTATAAGAAGGGTGTGG+AGG | + | chr4_1:81863938-81863957 | Msa0577520:intron | 40.0% |
| CAATTGATAGGGTTGTTCAC+TGG | - | chr4_1:81864184-81864203 | None:intergenic | 40.0% | |
| GAGAAACACCCAAAATTGGT+CGG | + | chr4_1:81864401-81864420 | Msa0577520:intron | 40.0% | |
| GTGCAAGCTGAAAAGACAAA+CGG | + | chr4_1:81864550-81864569 | Msa0577520:CDS | 40.0% | |
| ! | GCTGAAAAGACAAACGGTTT+TGG | + | chr4_1:81864556-81864575 | Msa0577520:CDS | 40.0% |
| ! | ATGCTGTAGTGACACCTTTT+TGG | + | chr4_1:81864662-81864681 | Msa0577520:CDS | 40.0% |
| ATGTGGCTAAAGGACCAAAA+AGG | - | chr4_1:81864679-81864698 | None:intergenic | 40.0% | |
| AATAGCCAGTATGTGGCTAA+AGG | - | chr4_1:81864689-81864708 | None:intergenic | 40.0% | |
| ! | TTTAGCCACATACTGGCTAT+TGG | + | chr4_1:81864688-81864707 | Msa0577520:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4_1:81864729-81864748 | Msa0577520:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr4_1:81864730-81864749 | Msa0577520:CDS | 40.0% | |
| TATGAAAAGGGTGAGCCATT+TGG | + | chr4_1:81864742-81864761 | Msa0577520:CDS | 40.0% | |
| AGTGGCTTTCTAATAAGAGG+TGG | + | chr4_1:81864990-81865009 | Msa0577520:three_prime_UTR | 40.0% | |
| CTCACTACTCTACTCAAAGT+TGG | + | chr4_1:81865181-81865200 | Msa0577520:three_prime_UTR | 40.0% | |
| GCTACTGCTACCAAAAACCT+TGG | + | chr4_1:81860794-81860813 | Msa0577520:CDS | 45.0% | |
| GATTGAGAATTCACTGGCCA+AGG | - | chr4_1:81860814-81860833 | None:intergenic | 45.0% | |
| GGCCAGTGAATTCTCAATCA+AGG | + | chr4_1:81860815-81860834 | Msa0577520:CDS | 45.0% | |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr4_1:81860969-81860988 | None:intergenic | 45.0% | |
| GTAATCACACCTGCATCTCT+TGG | - | chr4_1:81861137-81861156 | None:intergenic | 45.0% | |
| AGCACCAGCTTTCCTTAACT+TGG | - | chr4_1:81861159-81861178 | None:intergenic | 45.0% | |
| ATGTGACCACTCACTCAAAG+TGG | - | chr4_1:81861198-81861217 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | + | chr4_1:81861201-81861220 | Msa0577520:CDS | 45.0% | |
| AGGTCTAGTAAAGTTCCTGG+TGG | + | chr4_1:81861221-81861240 | Msa0577520:CDS | 45.0% | |
| CTAGTAAAGTTCCTGGTGGT+TGG | + | chr4_1:81861225-81861244 | Msa0577520:CDS | 45.0% | |
| ! | GCTGGCCTAAGATTGAGTAA+AGG | + | chr4_1:81861497-81861516 | Msa0577520:intron | 45.0% |
| GTAAAGGCTAAGTGTCCGTT+CGG | + | chr4_1:81861513-81861532 | Msa0577520:intron | 45.0% | |
| TACCTCCCAGAATCGAGTTT+GGG | - | chr4_1:81861812-81861831 | None:intergenic | 45.0% | |
| GATCCTTGTGGTTCAAGTAG+TGG | + | chr4_1:81862101-81862120 | Msa0577520:CDS | 45.0% | |
| GATCCACTACTTGAACCACA+AGG | - | chr4_1:81862107-81862126 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr4_1:81862161-81862180 | Msa0577520:CDS | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | - | chr4_1:81862180-81862199 | None:intergenic | 45.0% | |
| ! | AAGGCCTGAAGGGCATAAAA+TGG | - | chr4_1:81862189-81862208 | None:intergenic | 45.0% |
| CTACTAGTGAGACCAACTGT+TGG | - | chr4_1:81862233-81862252 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | + | chr4_1:81862258-81862277 | Msa0577520:CDS | 45.0% | |
| !! | AAAAGTGTCGATGCCTGCTA+TGG | - | chr4_1:81862525-81862544 | None:intergenic | 45.0% |
| GTCCAAAACGTTGCTCATGT+TGG | + | chr4_1:81863241-81863260 | Msa0577520:intron | 45.0% | |
| TAGGGTTGTTCACTGGGAAT+GGG | - | chr4_1:81864177-81864196 | None:intergenic | 45.0% | |
| ATAGGGTTGTTCACTGGGAA+TGG | - | chr4_1:81864178-81864197 | None:intergenic | 45.0% | |
| ACATCTGCCAAACTGTTCAC+CGG | - | chr4_1:81864368-81864387 | None:intergenic | 45.0% | |
| GGAGTATGGCCAAGATGTAT+TGG | + | chr4_1:81864528-81864547 | Msa0577520:CDS | 45.0% | |
| CAGCTTGCACCAATACATCT+TGG | - | chr4_1:81864540-81864559 | None:intergenic | 45.0% | |
| TTGGTCCTTTAGCCACATAC+TGG | + | chr4_1:81864681-81864700 | Msa0577520:CDS | 45.0% | |
| AACCTCCAATAGCCAGTATG+TGG | - | chr4_1:81864696-81864715 | None:intergenic | 45.0% | |
| ! | TCACCCTTTTCATATCCTGC+TGG | - | chr4_1:81864736-81864755 | None:intergenic | 45.0% |
| ATTTCCAACTTCCTAAGGGG+AGG | - | chr4_1:81864856-81864875 | None:intergenic | 45.0% | |
| TGAGCAAGCAAATTCACTCC+AGG | - | chr4_1:81864967-81864986 | None:intergenic | 45.0% | |
| !! | GCTGGCTCTTTTGCACTTCT+TGG | + | chr4_1:81861101-81861120 | Msa0577520:CDS | 50.0% |
| TGGAATGCTAGAGGTGGACA+AGG | + | chr4_1:81861245-81861264 | Msa0577520:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | + | chr4_1:81861250-81861269 | Msa0577520:CDS | 50.0% | |
| AACCCAAACTCGATTCTGGG+AGG | + | chr4_1:81861807-81861826 | Msa0577520:intron | 50.0% | |
| GTACCTCCCAGAATCGAGTT+TGG | - | chr4_1:81861813-81861832 | None:intergenic | 50.0% | |
| GAAAAAGGGGTCAGTCTCCA+TGG | - | chr4_1:81861897-81861916 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTTATGCCCTTC+AGG | + | chr4_1:81862182-81862201 | Msa0577520:CDS | 50.0% |
| CCACTGAGTTAAGGCCTGAA+GGG | - | chr4_1:81862199-81862218 | None:intergenic | 50.0% | |
| ACCACTGAGTTAAGGCCTGA+AGG | - | chr4_1:81862200-81862219 | None:intergenic | 50.0% | |
| TTCAGGCCTTAACTCAGTGG+TGG | + | chr4_1:81862199-81862218 | Msa0577520:CDS | 50.0% | |
| TCAGGCCTTAACTCAGTGGT+GGG | + | chr4_1:81862200-81862219 | Msa0577520:CDS | 50.0% | |
| TAAGGCCCACCACTGAGTTA+AGG | - | chr4_1:81862208-81862227 | None:intergenic | 50.0% | |
| GTGGGCCTTAAACCAACAGT+TGG | + | chr4_1:81862218-81862237 | Msa0577520:CDS | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr4_1:81862236-81862255 | Msa0577520:CDS | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | - | chr4_1:81862269-81862288 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | - | chr4_1:81862277-81862296 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | - | chr4_1:81862278-81862297 | None:intergenic | 50.0% | |
| TCGGCCAACAACTTGACGTT+TGG | + | chr4_1:81862944-81862963 | Msa0577520:intron | 50.0% | |
| CTATACGCCTGCTTAATGGG+AGG | - | chr4_1:81863915-81863934 | None:intergenic | 50.0% | |
| !! | CAGGCAAAGAGGTGCAGTTT+TGG | + | chr4_1:81864223-81864242 | Msa0577520:intron | 50.0% |
| AGCTTCACCGGTGAACAGTT+TGG | + | chr4_1:81864358-81864377 | Msa0577520:CDS | 50.0% | |
| ! | AGCCACATACTGGCTATTGG+AGG | + | chr4_1:81864691-81864710 | Msa0577520:CDS | 50.0% |
| CTGGCTATTGGAGGTTATCC+TGG | + | chr4_1:81864700-81864719 | Msa0577520:CDS | 50.0% | |
| TCAGTCGTGCCAAGAGATGC+AGG | + | chr4_1:81861125-81861144 | Msa0577520:CDS | 55.0% | |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr4_1:81861189-81861208 | Msa0577520:CDS | 55.0% |
| CCTCTAGCATTCCAACCACC+AGG | - | chr4_1:81861239-81861258 | None:intergenic | 55.0% | |
| CCTGGTGGTTGGAATGCTAG+AGG | + | chr4_1:81861236-81861255 | Msa0577520:CDS | 55.0% | |
| GGTGGTTGGAATGCTAGAGG+TGG | + | chr4_1:81861239-81861258 | Msa0577520:CDS | 55.0% | |
| CCCTTCAGGCCTTAACTCAG+TGG | + | chr4_1:81862196-81862215 | Msa0577520:CDS | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | + | chr4_1:81862272-81862291 | Msa0577520:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | + | chr4_1:81862273-81862292 | Msa0577520:CDS | 55.0% | |
| CACAGTTGGGTAAGCACGCT+CGG | + | chr4_1:81862286-81862305 | Msa0577520:intron | 55.0% | |
| ACAGTTGGGTAAGCACGCTC+GGG | + | chr4_1:81862287-81862306 | Msa0577520:intron | 55.0% | |
| GCGAAGACCTCCCATTAAGC+AGG | + | chr4_1:81863905-81863924 | Msa0577520:intron | 55.0% | |
| TCAGAAAGCCACCTCCCCTT+AGG | + | chr4_1:81864842-81864861 | Msa0577520:CDS | 55.0% | |
| TCCAACTTCCTAAGGGGAGG+TGG | - | chr4_1:81864853-81864872 | None:intergenic | 55.0% | |
| CCTGCTGGAACACTCACTCC+AGG | - | chr4_1:81864721-81864740 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | + | chr4_1:81864718-81864737 | Msa0577520:CDS | 60.0% | |
| GCCACCTCCCCTTAGGAAGT+TGG | + | chr4_1:81864849-81864868 | Msa0577520:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81860722 | 81865253 | 81860722 | ID=Msa0577520;Name=Msa0577520 |
| chr4_1 | mRNA | 81860722 | 81865253 | 81860722 | ID=Msa0577520-mRNA-1;Parent=Msa0577520;Name=Msa0577520-mRNA-1;_AED=0.43;_eAED=0.43;_QI=4|1|1|1|1|1|5|344|525 |
| chr4_1 | exon | 81860722 | 81861271 | 81860722 | ID=Msa0577520-mRNA-1:exon:29495;Parent=Msa0577520-mRNA-1 |
| chr4_1 | exon | 81862083 | 81862294 | 81862083 | ID=Msa0577520-mRNA-1:exon:29496;Parent=Msa0577520-mRNA-1 |
| chr4_1 | exon | 81862478 | 81862714 | 81862478 | ID=Msa0577520-mRNA-1:exon:29497;Parent=Msa0577520-mRNA-1 |
| chr4_1 | exon | 81864226 | 81864418 | 81864226 | ID=Msa0577520-mRNA-1:exon:29498;Parent=Msa0577520-mRNA-1 |
| chr4_1 | exon | 81864520 | 81865253 | 81864520 | ID=Msa0577520-mRNA-1:exon:29499;Parent=Msa0577520-mRNA-1 |
| chr4_1 | five_prime_UTR | 81860722 | 81860725 | 81860722 | ID=Msa0577520-mRNA-1:five_prime_utr;Parent=Msa0577520-mRNA-1 |
| chr4_1 | CDS | 81860726 | 81861271 | 81860726 | ID=Msa0577520-mRNA-1:cds;Parent=Msa0577520-mRNA-1 |
| chr4_1 | CDS | 81862083 | 81862294 | 81862083 | ID=Msa0577520-mRNA-1:cds;Parent=Msa0577520-mRNA-1 |
| chr4_1 | CDS | 81862478 | 81862714 | 81862478 | ID=Msa0577520-mRNA-1:cds;Parent=Msa0577520-mRNA-1 |
| chr4_1 | CDS | 81864226 | 81864418 | 81864226 | ID=Msa0577520-mRNA-1:cds;Parent=Msa0577520-mRNA-1 |
| chr4_1 | CDS | 81864520 | 81864909 | 81864520 | ID=Msa0577520-mRNA-1:cds;Parent=Msa0577520-mRNA-1 |
| chr4_1 | three_prime_UTR | 81864910 | 81865253 | 81864910 | ID=Msa0577520-mRNA-1:three_prime_utr;Parent=Msa0577520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
