Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577780 | XP_013446597.2 | 97.079 | 445 | 13 | 0 | 1 | 445 | 27 | 471 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577780 | sp|A0A1P8B760|AMI4G_ARATH | 60.850 | 447 | 163 | 3 | 1 | 444 | 34 | 471 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577780 | A0A396GPR5 | 97.079 | 445 | 13 | 0 | 1 | 445 | 27 | 471 | 0.0 | 887 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0577780 | Msa0592660 | 0.804466 | 2.131491e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577780 | MtrunA17_Chr8g0377681 | 97.079 | 445 | 13 | 0 | 1 | 445 | 27 | 471 | 0.0 | 887 |
| Msa0577780 | MtrunA17_Chr8g0377641 | 86.261 | 444 | 60 | 1 | 2 | 445 | 28 | 470 | 0.0 | 794 |
| Msa0577780 | MtrunA17_Chr8g0377651 | 86.517 | 445 | 59 | 1 | 1 | 445 | 30 | 473 | 0.0 | 794 |
| Msa0577780 | MtrunA17_Chr8g0377691 | 85.843 | 445 | 62 | 1 | 1 | 445 | 30 | 473 | 0.0 | 781 |
| Msa0577780 | MtrunA17_Chr8g0377701 | 85.393 | 445 | 64 | 1 | 1 | 445 | 31 | 474 | 0.0 | 776 |
| Msa0577780 | MtrunA17_Chr4g0037521 | 59.111 | 450 | 175 | 6 | 2 | 445 | 25 | 471 | 2.91e-179 | 510 |
| Msa0577780 | MtrunA17_Chr4g0037491 | 55.755 | 278 | 111 | 5 | 176 | 445 | 1 | 274 | 8.99e-98 | 295 |
| Msa0577780 | MtrunA17_Chr4g0037501 | 63.830 | 94 | 32 | 2 | 76 | 167 | 2 | 95 | 7.70e-31 | 114 |
| Msa0577780 | MtrunA17_Chr8g0385461 | 31.783 | 258 | 159 | 7 | 3 | 258 | 154 | 396 | 1.86e-27 | 115 |
| Msa0577780 | MtrunA17_Chr3g0097801 | 33.704 | 270 | 168 | 5 | 15 | 280 | 46 | 308 | 1.38e-25 | 109 |
| Msa0577780 | MtrunA17_Chr2g0279961 | 28.622 | 283 | 189 | 6 | 12 | 289 | 130 | 404 | 2.33e-19 | 90.9 |
| Msa0577780 | MtrunA17_Chr3g0130801 | 30.932 | 236 | 150 | 7 | 11 | 241 | 200 | 427 | 3.77e-15 | 77.8 |
| Msa0577780 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 111 | 228 | 63 | 176 | 1.05e-13 | 72.8 |
| Msa0577780 | MtrunA17_Chr8g0377661 | 86.111 | 36 | 5 | 0 | 410 | 445 | 1 | 36 | 4.28e-13 | 64.7 |
| Msa0577780 | MtrunA17_Chr8g0384851 | 29.675 | 246 | 158 | 6 | 3 | 243 | 128 | 363 | 9.15e-13 | 70.1 |
| Msa0577780 | MtrunA17_Chr4g0050371 | 37.190 | 121 | 70 | 2 | 109 | 228 | 107 | 222 | 1.36e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577780 | AT4G34880.2 | 60.850 | 447 | 163 | 3 | 1 | 444 | 34 | 471 | 0.0 | 517 |
| Msa0577780 | AT4G34880.1 | 53.139 | 446 | 153 | 4 | 1 | 444 | 34 | 425 | 5.61e-157 | 452 |
| Msa0577780 | AT5G07360.1 | 32.669 | 251 | 156 | 6 | 4 | 252 | 197 | 436 | 1.80e-26 | 112 |
| Msa0577780 | AT5G07360.3 | 32.669 | 251 | 156 | 6 | 4 | 252 | 197 | 436 | 1.80e-26 | 112 |
| Msa0577780 | AT3G25660.1 | 35.714 | 266 | 152 | 8 | 22 | 280 | 56 | 309 | 7.77e-24 | 104 |
| Msa0577780 | AT5G07360.2 | 32.271 | 251 | 150 | 7 | 4 | 252 | 197 | 429 | 2.19e-23 | 103 |
| Msa0577780 | AT5G64440.1 | 26.855 | 283 | 184 | 8 | 12 | 284 | 131 | 400 | 2.40e-17 | 85.1 |
| Msa0577780 | AT1G08980.1 | 41.176 | 119 | 64 | 3 | 111 | 228 | 64 | 177 | 1.21e-14 | 75.9 |
| Msa0577780 | AT5G09420.1 | 37.607 | 117 | 67 | 2 | 109 | 224 | 105 | 216 | 3.94e-11 | 65.5 |
Find 103 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTATACTCACCAATTT+TGG | 0.071732 | 4_1:+82089436 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-82091882 | Msa0577780:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 4_1:+82092041 | None:intergenic |
| ATGACAAGATGGTCAGAAAA+TGG | 0.246254 | 4_1:-82089237 | Msa0577780:CDS |
| AATATCAGTAGCTGCAAATT+TGG | 0.248946 | 4_1:-82091210 | Msa0577780:CDS |
| TTGATGTTAATTGGTTTCTT+TGG | 0.276109 | 4_1:+82092050 | None:intergenic |
| TTTAGTAGCATACTTGCTAT+TGG | 0.285041 | 4_1:-82089156 | Msa0577780:CDS |
| TGAGTGAGTGGTCAAATTAC+AGG | 0.310539 | 4_1:-82091718 | Msa0577780:CDS |
| GAATCTGGTGCTATCATATT+GGG | 0.314103 | 4_1:-82091752 | Msa0577780:CDS |
| CTAAAGAAAGACGGACTAAT+AGG | 0.316078 | 4_1:-82090494 | Msa0577780:CDS |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+82091869 | None:intergenic |
| CAGGGATCATCCAAAGTATA+TGG | 0.328369 | 4_1:+82091254 | None:intergenic |
| GGAATCTGGTGCTATCATAT+TGG | 0.328454 | 4_1:-82091753 | Msa0577780:CDS |
| CAGGCAGAGAGGTGCAGTTT+TGG | 0.331310 | 4_1:-82089623 | Msa0577780:CDS |
| TACCCGACTGTGTCTTGCCT+TGG | 0.332981 | 4_1:+82091065 | None:intergenic |
| GGCTCCATCTTATGCCCTTC+AGG | 0.344879 | 4_1:-82091158 | Msa0577780:CDS |
| AATTGAGCATAGCCACCTTC+TGG | 0.348881 | 4_1:+82090518 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.351952 | 4_1:-82091904 | Msa0577780:CDS |
| ATGCTACTAAAGGATGAAAA+AGG | 0.355679 | 4_1:+82089168 | None:intergenic |
| CAGCTTGCAACATGATATCT+TGG | 0.356824 | 4_1:+82089307 | None:intergenic |
| GTGTCTTGCCTTGGGCTGAT+TGG | 0.357682 | 4_1:+82091074 | None:intergenic |
| TCCAAGACACCTTTGAGAAC+TGG | 0.358911 | 4_1:+82091983 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 4_1:+82091953 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.382745 | 4_1:-82089288 | Msa0577780:CDS |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:+82090617 | None:intergenic |
| GTTACCAAGTTAAGGGAATC+TGG | 0.384512 | 4_1:-82091767 | Msa0577780:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.391166 | 4_1:-82089144 | Msa0577780:CDS |
| CCTGCTGGAACAATGATTCC+AGG | 0.396619 | 4_1:+82089126 | None:intergenic |
| TACCTTTCCTTGTCCACCTC+TGG | 0.402662 | 4_1:+82091667 | None:intergenic |
| CCAAGACACCTTTGAGAACT+GGG | 0.403077 | 4_1:+82091984 | None:intergenic |
| TAGGAGGAACTTGATAAGTA+TGG | 0.408411 | 4_1:-82089330 | Msa0577780:CDS |
| ACCCGACTGTGTCTTGCCTT+GGG | 0.412367 | 4_1:+82091066 | None:intergenic |
| TTTGCAGAATCCATATACTT+TGG | 0.416501 | 4_1:-82091264 | Msa0577780:intron |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:-82091858 | Msa0577780:CDS |
| TGGTCAAATTACAGGTCTAA+TGG | 0.421009 | 4_1:-82091710 | Msa0577780:CDS |
| AGGTGTTGTTACCAAGTTAA+GGG | 0.431180 | 4_1:-82091774 | Msa0577780:CDS |
| CAGGTGTTGTTACCAAGTTA+AGG | 0.431264 | 4_1:-82091775 | Msa0577780:CDS |
| CCCAGTTCTCAAAGGTGTCT+TGG | 0.444958 | 4_1:-82091984 | Msa0577780:CDS |
| AGCACCAGATTCCCTTAACT+TGG | 0.473094 | 4_1:+82091763 | None:intergenic |
| TTGCAAGCTGAAAAGACAAA+TGG | 0.474253 | 4_1:-82089294 | Msa0577780:CDS |
| TTCATAGCAATCTCTTCACT+TGG | 0.477749 | 4_1:+82089556 | None:intergenic |
| TGACAAGATGGTCAGAAAAT+GGG | 0.481903 | 4_1:-82089236 | Msa0577780:CDS |
| AGCTACACCTGAAAACGTTA+AGG | 0.482219 | 4_1:-82090403 | Msa0577780:intron |
| GCCCAAGGCAAGACACAGTC+GGG | 0.483498 | 4_1:-82091067 | Msa0577780:intron |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 4_1:-82091896 | Msa0577780:CDS |
| GTGATGCTACTAAGTCTTTG+AGG | 0.490355 | 4_1:+82089503 | None:intergenic |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:-82089115 | None:intergenic |
| AATAGCAAGTATGCTACTAA+AGG | 0.492751 | 4_1:+82089158 | None:intergenic |
| AGTAGCATACTTGCTATTGG+AGG | 0.497454 | 4_1:-82089153 | Msa0577780:CDS |
| TTTGAATATTGATTTGGTTG+AGG | 0.503213 | 4_1:+82092008 | None:intergenic |
| CCTGGAATCATTGTTCCAGC+AGG | 0.504120 | 4_1:-82089126 | Msa0577780:CDS |
| TTCAGGTCTTAACTCAGTGG+TGG | 0.510569 | 4_1:-82091141 | Msa0577780:CDS |
| GTAACAACACCTGCATCTCT+TGG | 0.511275 | 4_1:+82091785 | None:intergenic |
| GAAAGTGTCAATGGCTGCTA+TGG | 0.511600 | 4_1:+82090574 | None:intergenic |
| GGACTAATAGGAAAGAGAAT+AGG | 0.515996 | 4_1:-82090482 | Msa0577780:CDS |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 4_1:+82091899 | None:intergenic |
| TAGAGCTGATCAAGAGAGAA+GGG | 0.527368 | 4_1:-82091930 | Msa0577780:CDS |
| AAGACCTGAAGGGCATAAGA+TGG | 0.527458 | 4_1:+82091154 | None:intergenic |
| CCTCTGGCACTCCAACCACT+TGG | 0.532038 | 4_1:+82091683 | None:intergenic |
| TGTCTCATCGAAAGTGTCAA+TGG | 0.539620 | 4_1:+82090565 | None:intergenic |
| ACATCTGCCAAGCTTCTCAC+TGG | 0.542835 | 4_1:+82089481 | None:intergenic |
| TCAGTGGTGCCAAGAGATGC+AGG | 0.543965 | 4_1:-82091794 | Msa0577780:CDS |
| AGCATCACCAGTGAGAAGCT+TGG | 0.549066 | 4_1:-82089488 | Msa0577780:CDS |
| GGCCACTGAATTCTCAATTG+AGG | 0.551453 | 4_1:-82092104 | Msa0577780:CDS |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:-82091836 | Msa0577780:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:-82091104 | Msa0577780:CDS |
| TGCCAGAGGTGGACAAGGAA+AGG | 0.558940 | 4_1:-82091669 | Msa0577780:intron |
| TGATCCACTACTTGATCCAC+AGG | 0.561542 | 4_1:+82091235 | None:intergenic |
| AATTGAGAATTCAGTGGCCA+TGG | 0.562344 | 4_1:+82092108 | None:intergenic |
| CTAATGGAGCTCCAAGTGGT+TGG | 0.563231 | 4_1:-82091694 | Msa0577780:CDS |
| GTTCCAGCAGGATATGAAAA+GGG | 0.570325 | 4_1:-82089114 | None:intergenic |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.570811 | 4_1:-82091730 | Msa0577780:CDS |
| AGTTCTCAAAGGTGTCTTGG+AGG | 0.575693 | 4_1:-82091981 | Msa0577780:CDS |
| TGGAGTGCCAGAGGTGGACA+AGG | 0.582665 | 4_1:-82091674 | Msa0577780:CDS |
| AACAAATAAACTTGATGCTG+TGG | 0.584496 | 4_1:-82089196 | Msa0577780:CDS |
| ACCACTGAGTTAAGACCTGA+AGG | 0.584572 | 4_1:+82091143 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:-82090503 | Msa0577780:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:-82089248 | Msa0577780:CDS |
| TCAGGTCTTAACTCAGTGGT+GGG | 0.586914 | 4_1:-82091140 | Msa0577780:CDS |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.596004 | 4_1:-82091931 | Msa0577780:CDS |
| AGCCCAAGGCAAGACACAGT+CGG | 0.598710 | 4_1:-82091068 | Msa0577780:CDS |
| TGGTGCTATCATATTGGGGA+AGG | 0.599173 | 4_1:-82091747 | Msa0577780:CDS |
| AATTTGGTGACTGTGTCACT+TGG | 0.602109 | 4_1:-82091194 | Msa0577780:CDS |
| ATTTGACCACTCACTCAAAG+TGG | 0.602997 | 4_1:+82091724 | None:intergenic |
| CCCTTCAGGTCTTAACTCAG+TGG | 0.604539 | 4_1:-82091144 | Msa0577780:CDS |
| CCAAGTGGTTGGAGTGCCAG+AGG | 0.606261 | 4_1:-82091683 | Msa0577780:CDS |
| ATTCAAAACCCAGTTCTCAA+AGG | 0.608358 | 4_1:-82091992 | Msa0577780:CDS |
| TCAAAGTATATTCCAGAAGG+TGG | 0.608727 | 4_1:-82090530 | Msa0577780:CDS |
| AGTGGTTGGAGTGCCAGAGG+TGG | 0.615681 | 4_1:-82091680 | Msa0577780:CDS |
| GCATCAAAGTATATTCCAGA+AGG | 0.627357 | 4_1:-82090533 | Msa0577780:CDS |
| GTGGGCATCAAACCAACAGT+TGG | 0.630288 | 4_1:-82091122 | Msa0577780:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:+82091110 | None:intergenic |
| AGGGCATAAGATGGAGCCAT+CGG | 0.636027 | 4_1:+82091163 | None:intergenic |
| TTCCTCAATTGAGAATTCAG+TGG | 0.636730 | 4_1:+82092102 | None:intergenic |
| GATCCCTGTGGATCAAGTAG+TGG | 0.645260 | 4_1:-82091239 | Msa0577780:CDS |
| GTGTAATTCCAATCAGCCCA+AGG | 0.647537 | 4_1:-82091082 | Msa0577780:CDS |
| AATCTGGTGCTATCATATTG+GGG | 0.666419 | 4_1:-82091751 | Msa0577780:CDS |
| GATGAAATTATCAGGCAGAG+AGG | 0.691759 | 4_1:-82089634 | Msa0577780:intron |
| TATACTTTGGATGATCCCTG+TGG | 0.698609 | 4_1:-82091251 | Msa0577780:CDS |
| AGGTCTAATGGAGCTCCAAG+TGG | 0.700368 | 4_1:-82091698 | Msa0577780:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-82091179 | Msa0577780:CDS |
| CCACTGAGTTAAGACCTGAA+GGG | 0.717424 | 4_1:+82091144 | None:intergenic |
| GATCCACTACTTGATCCACA+GGG | 0.772110 | 4_1:+82091236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAATTATTTAGTA+TGG | - | chr4_1:82089631-82089650 | Msa0577780:intron | 10.0% |
| !!! | GACTAATTTTTTTTTTAATA+AGG | + | chr4_1:82089900-82089919 | None:intergenic | 10.0% |
| !! | GATATTAATAAATATTAATC+TGG | - | chr4_1:82091838-82091857 | Msa0577780:CDS | 10.0% |
| !!! | TTTTATAAATATCATTGCAA+AGG | + | chr4_1:82091062-82091081 | None:intergenic | 15.0% |
| !!! | AAATTATTTTAGTCTTTCAT+AGG | - | chr4_1:82091127-82091146 | Msa0577780:CDS | 15.0% |
| !! | TAATGTAAATGTAAGTAAAT+AGG | + | chr4_1:82091536-82091555 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTATTTGTTTA+TGG | - | chr4_1:82091808-82091827 | Msa0577780:CDS | 15.0% |
| !! | AATTGTTGTATAAAAATTGT+AGG | - | chr4_1:82091873-82091892 | Msa0577780:CDS | 15.0% |
| !! | TCTTAGTTAATTTAGTTAAC+TGG | - | chr4_1:82089591-82089610 | Msa0577780:CDS | 20.0% |
| !! | TAGACTATAAATTCTATGTT+TGG | + | chr4_1:82089780-82089799 | None:intergenic | 20.0% |
| !! | GCAAGAATATTAGAATATAT+TGG | + | chr4_1:82090505-82090524 | None:intergenic | 20.0% |
| !! | GACTAAAATAATTTCATTCA+AGG | + | chr4_1:82091121-82091140 | None:intergenic | 20.0% |
| !! | ATAACATTGATGAAATTATC+AGG | - | chr4_1:82091580-82091599 | Msa0577780:intron | 20.0% |
| !! | TTTATTTGTTTATGGATACT+TGG | - | chr4_1:82091816-82091835 | Msa0577780:CDS | 20.0% |
| !! | TTGATGTTAATTGGTTTCTT+TGG | + | chr4_1:82089175-82089194 | None:intergenic | 25.0% |
| !!! | TTTGAATATTGATTTGGTTG+AGG | + | chr4_1:82089217-82089236 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:82089356-82089375 | None:intergenic | 25.0% |
| ! | TAAATTAACTAAGAAGTAGC+AGG | + | chr4_1:82089585-82089604 | None:intergenic | 25.0% |
| ! | AACTAACCTAAACATGATTA+TGG | - | chr4_1:82089809-82089828 | Msa0577780:intron | 25.0% |
| ! | ACTAACCTAAACATGATTAT+GGG | - | chr4_1:82089810-82089829 | Msa0577780:intron | 25.0% |
| !!! | TATATCAAACTTCAAGTTGT+TGG | + | chr4_1:82090913-82090932 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTTTACAAACCA+TGG | - | chr4_1:82091153-82091172 | Msa0577780:CDS | 25.0% |
| ! | TCATGTTAGATAAACTATGA+CGG | - | chr4_1:82091180-82091199 | Msa0577780:CDS | 25.0% |
| !!! | ATTTGATCTTTATTTTCTGC+AGG | + | chr4_1:82091306-82091325 | None:intergenic | 25.0% |
| ! | AATTTAAGCTGTCCAAAATT+TGG | - | chr4_1:82091436-82091455 | Msa0577780:intron | 25.0% |
| !! | TTGTAACTAATTTTCATGAC+AGG | + | chr4_1:82091498-82091517 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTTTTCTTATTGA+AGG | + | chr4_1:82091772-82091791 | None:intergenic | 25.0% |
| ! | CAATAAGAAAAACCCAAAAT+TGG | - | chr4_1:82091773-82091792 | Msa0577780:CDS | 25.0% |
| !! | CATTTATACTCACCAATTTT+GGG | + | chr4_1:82091788-82091807 | None:intergenic | 25.0% |
| !! | ACATTTATACTCACCAATTT+TGG | + | chr4_1:82091789-82091808 | None:intergenic | 25.0% |
| ! | TGTTGTATAAAAATTGTAGG+AGG | - | chr4_1:82091876-82091895 | Msa0577780:CDS | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | - | chr4_1:82091974-82091993 | Msa0577780:CDS | 25.0% |
| CAAGTTGTCTTGATGTTAAT+TGG | + | chr4_1:82089184-82089203 | None:intergenic | 30.0% | |
| !!! | CTGGGTTTTGAATATTGATT+TGG | + | chr4_1:82089223-82089242 | None:intergenic | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:82089346-82089365 | Msa0577780:intron | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | - | chr4_1:82089364-82089383 | Msa0577780:intron | 30.0% | |
| AATCAATTCAGTCATTCACT+CGG | + | chr4_1:82089679-82089698 | None:intergenic | 30.0% | |
| ATCAACTCACTTTCAATATC+AGG | + | chr4_1:82089709-82089728 | None:intergenic | 30.0% | |
| !! | ATTGAAAGTGAGTTGATCAA+AGG | - | chr4_1:82089712-82089731 | Msa0577780:intron | 30.0% |
| TTTGCAGAATCCATATACTT+TGG | - | chr4_1:82089958-82089977 | Msa0577780:intron | 30.0% | |
| AATATCAGTAGCTGCAAATT+TGG | - | chr4_1:82090012-82090031 | Msa0577780:intron | 30.0% | |
| TACTAAACGCAATAGAAATG+TGG | + | chr4_1:82090201-82090220 | None:intergenic | 30.0% | |
| ACTTCTGATAAGAGCAAAAT+TGG | - | chr4_1:82090412-82090431 | Msa0577780:CDS | 30.0% | |
| GAAAAATTGGAAATGCTTAC+AGG | - | chr4_1:82090479-82090498 | Msa0577780:CDS | 30.0% | |
| ! | TAGAACAATGTCTTTTGACA+GGG | + | chr4_1:82090546-82090565 | None:intergenic | 30.0% |
| ! | TTAGAACAATGTCTTTTGAC+AGG | + | chr4_1:82090547-82090566 | None:intergenic | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | - | chr4_1:82090719-82090738 | Msa0577780:intron | 30.0% |
| !! | TTTTAGAAATGACACTTTCC+CGG | - | chr4_1:82090784-82090803 | Msa0577780:intron | 30.0% |
| ! | TGTAGCTTGAATGTTTTATC+CGG | + | chr4_1:82090806-82090825 | None:intergenic | 30.0% |
| ATGACTATACACAATTCTCA+TGG | - | chr4_1:82090868-82090887 | Msa0577780:intron | 30.0% | |
| !! | ATGGAGTTGTTTGTTGTTAT+CGG | - | chr4_1:82090887-82090906 | Msa0577780:intron | 30.0% |
| ! | TTATCTAACATGATTAGCCA+TGG | + | chr4_1:82091173-82091192 | None:intergenic | 30.0% |
| !! | TCACTTTTGTAATTGAGTCT+TGG | + | chr4_1:82091221-82091240 | None:intergenic | 30.0% |
| TCTGATTAAGTAATGAACAC+AGG | + | chr4_1:82091396-82091415 | None:intergenic | 30.0% | |
| AACAAATAAACTTGATGCTG+TGG | - | chr4_1:82092026-82092045 | Msa0577780:CDS | 30.0% | |
| ATGCTACTAAAGGATGAAAA+AGG | + | chr4_1:82092057-82092076 | None:intergenic | 30.0% | |
| AATAGCAAGTATGCTACTAA+AGG | + | chr4_1:82092067-82092086 | None:intergenic | 30.0% | |
| !! | TTTAGTAGCATACTTGCTAT+TGG | - | chr4_1:82092066-82092085 | Msa0577780:CDS | 30.0% |
| TTCCTCAATTGAGAATTCAG+TGG | + | chr4_1:82089123-82089142 | None:intergenic | 35.0% | |
| ATTCAAAACCCAGTTCTCAA+AGG | - | chr4_1:82089230-82089249 | Msa0577780:CDS | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:82089340-82089359 | Msa0577780:intron | 35.0% |
| !! | AGGTGTTGTTACCAAGTTAA+GGG | - | chr4_1:82089448-82089467 | Msa0577780:intron | 35.0% |
| !! | GAATCTGGTGCTATCATATT+GGG | - | chr4_1:82089470-82089489 | Msa0577780:CDS | 35.0% |
| !! | AATCTGGTGCTATCATATTG+GGG | - | chr4_1:82089471-82089490 | Msa0577780:CDS | 35.0% |
| TGGTCAAATTACAGGTCTAA+TGG | - | chr4_1:82089512-82089531 | Msa0577780:CDS | 35.0% | |
| GTTCATAGTTACCGATAAGT+GGG | - | chr4_1:82089653-82089672 | Msa0577780:intron | 35.0% | |
| !! | AAAGTGAGTTGATCAAAGGT+AGG | - | chr4_1:82089716-82089735 | Msa0577780:intron | 35.0% |
| !! | AAGTGAGTTGATCAAAGGTA+GGG | - | chr4_1:82089717-82089736 | Msa0577780:intron | 35.0% |
| ! | ATCAAAGGTAGGGATGATTT+TGG | - | chr4_1:82089727-82089746 | Msa0577780:intron | 35.0% |
| ! | TCAAAGGTAGGGATGATTTT+GGG | - | chr4_1:82089728-82089747 | Msa0577780:intron | 35.0% |
| ACCGAAATCATTTCCAAAGT+CGG | - | chr4_1:82089751-82089770 | Msa0577780:intron | 35.0% | |
| ! | TCCGACTTTGGAAATGATTT+CGG | + | chr4_1:82089755-82089774 | None:intergenic | 35.0% |
| AACCTAAACATGATTATGGG+AGG | - | chr4_1:82089813-82089832 | Msa0577780:intron | 35.0% | |
| TACCTCCCATAATCATGTTT+AGG | + | chr4_1:82089818-82089837 | None:intergenic | 35.0% | |
| !! | GAAATAAGTGAGAGAGCATT+AGG | - | chr4_1:82089850-82089869 | Msa0577780:intron | 35.0% |
| ! | CACATTTGTTTCTCTCTATC+AGG | + | chr4_1:82090332-82090351 | None:intergenic | 35.0% |
| CTGATAAGAGCAAAATTGGA+TGG | - | chr4_1:82090416-82090435 | Msa0577780:CDS | 35.0% | |
| AATGTGTAACATCAGTTGTG+TGG | - | chr4_1:82090571-82090590 | Msa0577780:CDS | 35.0% | |
| GCATCAAAGTATATTCCAGA+AGG | - | chr4_1:82090689-82090708 | Msa0577780:intron | 35.0% | |
| TCAAAGTATATTCCAGAAGG+TGG | - | chr4_1:82090692-82090711 | Msa0577780:intron | 35.0% | |
| !! | CTAAAGAAAGACGGACTAAT+AGG | - | chr4_1:82090728-82090747 | Msa0577780:intron | 35.0% |
| GGACTAATAGGAAAGAGAAT+AGG | - | chr4_1:82090740-82090759 | Msa0577780:intron | 35.0% | |
| ! | GTAGCTTGAATGTTTTATCC+GGG | + | chr4_1:82090805-82090824 | None:intergenic | 35.0% |
| ! | TTAGCTACCTTAACGTTTTC+AGG | + | chr4_1:82090829-82090848 | None:intergenic | 35.0% |
| TTTCATTCAAGGATGCTGAT+AGG | + | chr4_1:82091110-82091129 | None:intergenic | 35.0% | |
| ! | CTTTTGTAATTGAGTCTTGG+TGG | + | chr4_1:82091218-82091237 | None:intergenic | 35.0% |
| TTGGACAGCTTAAATTGTGT+TGG | + | chr4_1:82091432-82091451 | None:intergenic | 35.0% | |
| AAGTAAATAGGTCTGCAGTA+TGG | + | chr4_1:82091524-82091543 | None:intergenic | 35.0% | |
| TTCATAGCAATCTCTTCACT+TGG | + | chr4_1:82091669-82091688 | None:intergenic | 35.0% | |
| TAGGAGGAACTTGATAAGTA+TGG | - | chr4_1:82091892-82091911 | Msa0577780:CDS | 35.0% | |
| TTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:82091928-82091947 | Msa0577780:CDS | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:82091934-82091953 | Msa0577780:CDS | 35.0% | |
| ATGACAAGATGGTCAGAAAA+TGG | - | chr4_1:82091985-82092004 | Msa0577780:CDS | 35.0% | |
| TGACAAGATGGTCAGAAAAT+GGG | - | chr4_1:82091986-82092005 | Msa0577780:CDS | 35.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | - | chr4_1:82089291-82089310 | Msa0577780:CDS | 40.0% | |
| TAGAGCTGATCAAGAGAGAA+GGG | - | chr4_1:82089292-82089311 | Msa0577780:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | - | chr4_1:82089386-82089405 | Msa0577780:intron | 40.0% | |
| !! | CAGGTGTTGTTACCAAGTTA+AGG | - | chr4_1:82089447-82089466 | Msa0577780:intron | 40.0% |
| GTTACCAAGTTAAGGGAATC+TGG | - | chr4_1:82089455-82089474 | Msa0577780:CDS | 40.0% | |
| !! | GGAATCTGGTGCTATCATAT+TGG | - | chr4_1:82089469-82089488 | Msa0577780:CDS | 40.0% |
| ATTTGACCACTCACTCAAAG+TGG | + | chr4_1:82089501-82089520 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCAAATTAC+AGG | - | chr4_1:82089504-82089523 | Msa0577780:CDS | 40.0% | |
| GGTTCATAGTTACCGATAAG+TGG | - | chr4_1:82089652-82089671 | Msa0577780:intron | 40.0% | |
| !! | ATAAGTGAGAGAGCATTAGG+TGG | - | chr4_1:82089853-82089872 | Msa0577780:intron | 40.0% |
| !! | TAAGTGAGAGAGCATTAGGT+GGG | - | chr4_1:82089854-82089873 | Msa0577780:intron | 40.0% |
| CAGGGATCATCCAAAGTATA+TGG | + | chr4_1:82089971-82089990 | None:intergenic | 40.0% | |
| TATACTTTGGATGATCCCTG+TGG | - | chr4_1:82089971-82089990 | Msa0577780:intron | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | - | chr4_1:82090028-82090047 | Msa0577780:intron | 40.0% |
| !! | ACACACACAAGATTTTGGCA+TGG | + | chr4_1:82090451-82090470 | None:intergenic | 40.0% |
| ! | ACAATGTCTTTTGACAGGGA+AGG | + | chr4_1:82090542-82090561 | None:intergenic | 40.0% |
| !!! | TCAGTTGTGTGGTTTTGTAC+AGG | - | chr4_1:82090582-82090601 | Msa0577780:CDS | 40.0% |
| ! | TTTTGTACAGGCCAATTTGC+AGG | - | chr4_1:82090594-82090613 | Msa0577780:CDS | 40.0% |
| TCTGATACAGTCCTGCAAAT+TGG | + | chr4_1:82090608-82090627 | None:intergenic | 40.0% | |
| !! | TGTCTCATCGAAAGTGTCAA+TGG | + | chr4_1:82090660-82090679 | None:intergenic | 40.0% |
| AGCTACACCTGAAAACGTTA+AGG | - | chr4_1:82090819-82090838 | Msa0577780:intron | 40.0% | |
| !! | AATTGAGTCTTGGTGGTGTA+TGG | + | chr4_1:82091211-82091230 | None:intergenic | 40.0% |
| ! | TGTCACCATCGTCCAAATTT+TGG | + | chr4_1:82091451-82091470 | None:intergenic | 40.0% |
| GATGAAATTATCAGGCAGAG+AGG | - | chr4_1:82091588-82091607 | Msa0577780:intron | 40.0% | |
| GTGATGCTACTAAGTCTTTG+AGG | + | chr4_1:82091722-82091741 | None:intergenic | 40.0% | |
| CAGCTTGCAACATGATATCT+TGG | + | chr4_1:82091918-82091937 | None:intergenic | 40.0% | |
| !! | AGTAGCATACTTGCTATTGG+AGG | - | chr4_1:82092069-82092088 | Msa0577780:CDS | 40.0% |
| GGCCACTGAATTCTCAATTG+AGG | - | chr4_1:82089118-82089137 | Msa0577780:CDS | 45.0% | |
| ! | CCAAGACACCTTTGAGAACT+GGG | + | chr4_1:82089241-82089260 | None:intergenic | 45.0% |
| ! | TCCAAGACACCTTTGAGAAC+TGG | + | chr4_1:82089242-82089261 | None:intergenic | 45.0% |
| !! | AGTTCTCAAAGGTGTCTTGG+AGG | - | chr4_1:82089241-82089260 | Msa0577780:CDS | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:82089272-82089291 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | - | chr4_1:82089318-82089337 | Msa0577780:CDS | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | + | chr4_1:82089326-82089345 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:82089326-82089345 | Msa0577780:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | - | chr4_1:82089412-82089431 | Msa0577780:intron | 45.0% |
| GTAACAACACCTGCATCTCT+TGG | + | chr4_1:82089440-82089459 | None:intergenic | 45.0% | |
| AGCACCAGATTCCCTTAACT+TGG | + | chr4_1:82089462-82089481 | None:intergenic | 45.0% | |
| !! | TGGTGCTATCATATTGGGGA+AGG | - | chr4_1:82089475-82089494 | Msa0577780:CDS | 45.0% |
| ! | CTATGTTTGGCTTCCGACTT+TGG | + | chr4_1:82089767-82089786 | None:intergenic | 45.0% |
| !! | GGGCGTTTTGGTAGATTATG+AGG | - | chr4_1:82089874-82089893 | Msa0577780:intron | 45.0% |
| GATCCACTACTTGATCCACA+GGG | + | chr4_1:82089989-82090008 | None:intergenic | 45.0% | |
| TGATCCACTACTTGATCCAC+AGG | + | chr4_1:82089990-82090009 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:82090043-82090062 | Msa0577780:intron | 45.0% |
| ! | AAGACCTGAAGGGCATAAGA+TGG | + | chr4_1:82090071-82090090 | None:intergenic | 45.0% |
| CCACTGAGTTAAGACCTGAA+GGG | + | chr4_1:82090081-82090100 | None:intergenic | 45.0% | |
| ACCACTGAGTTAAGACCTGA+AGG | + | chr4_1:82090082-82090101 | None:intergenic | 45.0% | |
| TTCAGGTCTTAACTCAGTGG+TGG | - | chr4_1:82090081-82090100 | Msa0577780:intron | 45.0% | |
| TCAGGTCTTAACTCAGTGGT+GGG | - | chr4_1:82090082-82090101 | Msa0577780:intron | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | + | chr4_1:82090115-82090134 | None:intergenic | 45.0% | |
| GTGTAATTCCAATCAGCCCA+AGG | - | chr4_1:82090140-82090159 | Msa0577780:intron | 45.0% | |
| AATGTGGACAAACGCTGTAC+AGG | + | chr4_1:82090185-82090204 | None:intergenic | 45.0% | |
| ! | CGCACACACACACAAGATTT+TGG | + | chr4_1:82090456-82090475 | None:intergenic | 45.0% |
| TGTGTGTGCGCGTGAAAAAT+TGG | - | chr4_1:82090466-82090485 | Msa0577780:CDS | 45.0% | |
| !! | GAAAGTGTCAATGGCTGCTA+TGG | + | chr4_1:82090651-82090670 | None:intergenic | 45.0% |
| AATTGAGCATAGCCACCTTC+TGG | + | chr4_1:82090707-82090726 | None:intergenic | 45.0% | |
| GCTGTCCAAAATTTGGACGA+TGG | - | chr4_1:82091443-82091462 | Msa0577780:intron | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:82092078-82092097 | Msa0577780:CDS | 45.0% |
| !! | CCCAGTTCTCAAAGGTGTCT+TGG | - | chr4_1:82089238-82089257 | Msa0577780:CDS | 50.0% |
| !! | GAGAGAAGGGAAAAAGCACC+TGG | - | chr4_1:82089305-82089324 | Msa0577780:CDS | 50.0% |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | - | chr4_1:82089404-82089423 | Msa0577780:intron | 50.0% |
| AGGTCTAATGGAGCTCCAAG+TGG | - | chr4_1:82089524-82089543 | Msa0577780:CDS | 50.0% | |
| CTAATGGAGCTCCAAGTGGT+TGG | - | chr4_1:82089528-82089547 | Msa0577780:CDS | 50.0% | |
| TACCTTTCCTTGTCCACCTC+TGG | + | chr4_1:82089558-82089577 | None:intergenic | 50.0% | |
| CATTCACTCGGCCCACTTAT+CGG | + | chr4_1:82089667-82089686 | None:intergenic | 50.0% | |
| !! | AGAGCATTAGGTGGGCGTTT+TGG | - | chr4_1:82089862-82089881 | Msa0577780:intron | 50.0% |
| GATCCCTGTGGATCAAGTAG+TGG | - | chr4_1:82089983-82090002 | Msa0577780:intron | 50.0% | |
| AGGGCATAAGATGGAGCCAT+CGG | + | chr4_1:82090062-82090081 | None:intergenic | 50.0% | |
| CCCTTCAGGTCTTAACTCAG+TGG | - | chr4_1:82090078-82090097 | Msa0577780:intron | 50.0% | |
| GTGGGCATCAAACCAACAGT+TGG | - | chr4_1:82090100-82090119 | Msa0577780:intron | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:82090118-82090137 | Msa0577780:intron | 50.0% |
| GCTCCAACTTTCTGCTAGAG+AGG | - | chr4_1:82091279-82091298 | Msa0577780:intron | 50.0% | |
| GGTCCTCTCTAGCAGAAAGT+TGG | + | chr4_1:82091285-82091304 | None:intergenic | 50.0% | |
| AGCATCACCAGTGAGAAGCT+TGG | - | chr4_1:82091734-82091753 | Msa0577780:CDS | 50.0% | |
| ACATCTGCCAAGCTTCTCAC+TGG | + | chr4_1:82091744-82091763 | None:intergenic | 50.0% | |
| CCTGCTGGAACAATGATTCC+AGG | + | chr4_1:82092099-82092118 | None:intergenic | 50.0% | |
| CCTGGAATCATTGTTCCAGC+AGG | - | chr4_1:82092096-82092115 | Msa0577780:CDS | 50.0% | |
| ! | TCAGTGGTGCCAAGAGATGC+AGG | - | chr4_1:82089428-82089447 | Msa0577780:intron | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | - | chr4_1:82089492-82089511 | Msa0577780:CDS | 55.0% |
| TGCCAGAGGTGGACAAGGAA+AGG | - | chr4_1:82089553-82089572 | Msa0577780:CDS | 55.0% | |
| GGCTCCATCTTATGCCCTTC+AGG | - | chr4_1:82090064-82090083 | Msa0577780:intron | 55.0% | |
| GTGTCTTGCCTTGGGCTGAT+TGG | + | chr4_1:82090151-82090170 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+CGG | - | chr4_1:82090154-82090173 | Msa0577780:intron | 55.0% | |
| ACCCGACTGTGTCTTGCCTT+GGG | + | chr4_1:82090159-82090178 | None:intergenic | 55.0% | |
| TACCCGACTGTGTCTTGCCT+TGG | + | chr4_1:82090160-82090179 | None:intergenic | 55.0% | |
| !! | CAGGCAGAGAGGTGCAGTTT+TGG | - | chr4_1:82091599-82091618 | Msa0577780:intron | 55.0% |
| CCTCTGGCACTCCAACCACT+TGG | + | chr4_1:82089542-82089561 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTTGGAGTGCCAG+AGG | - | chr4_1:82089539-82089558 | Msa0577780:CDS | 60.0% |
| ! | AGTGGTTGGAGTGCCAGAGG+TGG | - | chr4_1:82089542-82089561 | Msa0577780:CDS | 60.0% |
| ! | TGGAGTGCCAGAGGTGGACA+AGG | - | chr4_1:82089548-82089567 | Msa0577780:CDS | 60.0% |
| GCCCAAGGCAAGACACAGTC+GGG | - | chr4_1:82090155-82090174 | Msa0577780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82089116 | 82092128 | 82089116 | ID=Msa0577780;Name=Msa0577780 |
| chr4_1 | mRNA | 82089116 | 82092128 | 82089116 | ID=Msa0577780-mRNA-1;Parent=Msa0577780;Name=Msa0577780-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|0.8|5|0|445 |
| chr4_1 | exon | 82091670 | 82092128 | 82091670 | ID=Msa0577780-mRNA-1:exon:29735;Parent=Msa0577780-mRNA-1 |
| chr4_1 | exon | 82091068 | 82091279 | 82091068 | ID=Msa0577780-mRNA-1:exon:29734;Parent=Msa0577780-mRNA-1 |
| chr4_1 | exon | 82090404 | 82090640 | 82090404 | ID=Msa0577780-mRNA-1:exon:29733;Parent=Msa0577780-mRNA-1 |
| chr4_1 | exon | 82089450 | 82089642 | 82089450 | ID=Msa0577780-mRNA-1:exon:29732;Parent=Msa0577780-mRNA-1 |
| chr4_1 | exon | 82089116 | 82089349 | 82089116 | ID=Msa0577780-mRNA-1:exon:29731;Parent=Msa0577780-mRNA-1 |
| chr4_1 | CDS | 82091670 | 82092128 | 82091670 | ID=Msa0577780-mRNA-1:cds;Parent=Msa0577780-mRNA-1 |
| chr4_1 | CDS | 82091068 | 82091279 | 82091068 | ID=Msa0577780-mRNA-1:cds;Parent=Msa0577780-mRNA-1 |
| chr4_1 | CDS | 82090404 | 82090640 | 82090404 | ID=Msa0577780-mRNA-1:cds;Parent=Msa0577780-mRNA-1 |
| chr4_1 | CDS | 82089450 | 82089642 | 82089450 | ID=Msa0577780-mRNA-1:cds;Parent=Msa0577780-mRNA-1 |
| chr4_1 | CDS | 82089116 | 82089349 | 82089116 | ID=Msa0577780-mRNA-1:cds;Parent=Msa0577780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
