Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578130 | XP_013454608.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 113 | 240 | 9.07e-87 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578130 | sp|Q93VG8|PPDEX_ARATH | 41.304 | 92 | 50 | 1 | 2 | 89 | 113 | 204 | 2.77e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578130 | A0A072UFW2 | 98.438 | 128 | 2 | 0 | 1 | 128 | 113 | 240 | 4.33e-87 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0578130 | Msa0625590 | 0.851938 | 6.405939e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578130 | MtrunA17_Chr4g0002531 | 98.438 | 128 | 2 | 0 | 1 | 128 | 113 | 240 | 8.34e-91 | 262 |
| Msa0578130 | MtrunA17_Chr1g0149791 | 75.439 | 57 | 14 | 0 | 1 | 57 | 103 | 159 | 8.89e-29 | 104 |
| Msa0578130 | MtrunA17_Chr3g0137121 | 65.217 | 69 | 23 | 1 | 1 | 68 | 103 | 171 | 7.67e-28 | 101 |
| Msa0578130 | MtrunA17_Chr1g0162711 | 54.321 | 81 | 33 | 2 | 1 | 80 | 127 | 204 | 1.61e-24 | 94.0 |
| Msa0578130 | MtrunA17_Chr1g0154681 | 50.617 | 81 | 36 | 2 | 2 | 81 | 129 | 206 | 1.50e-22 | 89.0 |
| Msa0578130 | MtrunA17_Chr5g0399541 | 59.322 | 59 | 24 | 0 | 1 | 59 | 109 | 167 | 1.01e-21 | 86.3 |
| Msa0578130 | MtrunA17_Chr4g0055821 | 57.627 | 59 | 25 | 0 | 1 | 59 | 108 | 166 | 3.56e-21 | 84.7 |
| Msa0578130 | MtrunA17_Chr4g0063261 | 47.222 | 72 | 36 | 1 | 1 | 70 | 115 | 186 | 1.20e-19 | 80.9 |
| Msa0578130 | MtrunA17_Chr2g0306871 | 41.176 | 102 | 47 | 3 | 1 | 89 | 112 | 213 | 1.25e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578130 | AT1G80690.1 | 65.432 | 81 | 24 | 3 | 2 | 81 | 102 | 179 | 2.28e-32 | 114 |
| Msa0578130 | AT1G80690.2 | 62.353 | 85 | 24 | 4 | 2 | 81 | 102 | 183 | 3.74e-30 | 108 |
| Msa0578130 | AT5G25170.2 | 63.158 | 76 | 28 | 0 | 1 | 76 | 60 | 135 | 4.28e-29 | 104 |
| Msa0578130 | AT5G25170.1 | 63.158 | 76 | 28 | 0 | 1 | 76 | 104 | 179 | 1.77e-28 | 103 |
| Msa0578130 | AT2G25190.1 | 68.966 | 58 | 18 | 0 | 1 | 58 | 103 | 160 | 1.99e-25 | 96.7 |
| Msa0578130 | AT4G31980.1 | 72.414 | 58 | 16 | 0 | 1 | 58 | 103 | 160 | 7.33e-25 | 98.6 |
| Msa0578130 | AT1G47740.1 | 52.564 | 78 | 33 | 1 | 2 | 79 | 156 | 229 | 6.78e-22 | 88.2 |
| Msa0578130 | AT1G47740.2 | 52.564 | 78 | 33 | 1 | 2 | 79 | 156 | 229 | 6.78e-22 | 88.2 |
| Msa0578130 | AT1G47740.3 | 52.564 | 78 | 33 | 1 | 2 | 79 | 156 | 229 | 6.78e-22 | 88.2 |
| Msa0578130 | AT4G17486.1 | 41.304 | 92 | 50 | 1 | 2 | 89 | 113 | 204 | 2.82e-20 | 82.8 |
| Msa0578130 | AT5G47310.1 | 50.000 | 58 | 29 | 0 | 2 | 59 | 115 | 172 | 3.06e-19 | 80.5 |
| Msa0578130 | AT4G17486.2 | 57.500 | 40 | 17 | 0 | 1 | 40 | 112 | 151 | 1.05e-12 | 62.4 |
Find 27 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAATATGTTGCCTTTCT+TGG | 0.188301 | 4_1:+82622259 | None:intergenic |
| GATAGCAACTATTGTAAAAT+TGG | 0.213801 | 4_1:+82622288 | None:intergenic |
| CTTGAAACATTAACCTTGTT+TGG | 0.254573 | 4_1:+82622473 | None:intergenic |
| GATGCTTGTGTTAAGCTTAC+TGG | 0.266107 | 4_1:-82625278 | Msa0578130:CDS |
| ATTGTTTGTCTTCTATTCTA+TGG | 0.292259 | 4_1:+82622537 | None:intergenic |
| TGGAAATTCTATACCTAGTT+GGG | 0.371552 | 4_1:-82625258 | Msa0578130:CDS |
| CTGGAAATTCTATACCTAGT+TGG | 0.371967 | 4_1:-82625259 | Msa0578130:CDS |
| GTTAATCGTCTTGCTAGAAT+TGG | 0.379939 | 4_1:-82625236 | Msa0578130:intron |
| ATTAGTACATGATTCCTTGC+TGG | 0.385277 | 4_1:+82622159 | None:intergenic |
| TCACCGGCTTCTTCTAGCTC+TGG | 0.400392 | 4_1:-82622428 | Msa0578130:CDS |
| TTCTAGCTCTGGATTAAGAC+GGG | 0.465458 | 4_1:-82622417 | Msa0578130:CDS |
| GCCGGTGAAGATGCTCTTGA+AGG | 0.484906 | 4_1:+82622443 | None:intergenic |
| TGCTATCAACAAACCAAGAA+AGG | 0.486381 | 4_1:-82622272 | Msa0578130:three_prime_UTR |
| GATTAAGACGGGGAAGGAGC+AGG | 0.510693 | 4_1:-82622406 | Msa0578130:CDS |
| ACCTTCAAGAGCATCTTCAC+CGG | 0.528352 | 4_1:-82622444 | Msa0578130:CDS |
| TTTGTTGAGTTCAATGTCAC+GGG | 0.532965 | 4_1:+82622575 | None:intergenic |
| CTTCTAGCTCTGGATTAAGA+CGG | 0.562003 | 4_1:-82622418 | Msa0578130:CDS |
| GCAATAATCAAAGGTGAAGG+TGG | 0.569859 | 4_1:+82622371 | None:intergenic |
| TAAACATCAAGATGAAGGGG+AGG | 0.607838 | 4_1:+82622349 | None:intergenic |
| ATAATCAAAGGTGAAGGTGG+AGG | 0.615233 | 4_1:+82622374 | None:intergenic |
| AATCCAGAGCTAGAAGAAGC+CGG | 0.616375 | 4_1:+82622425 | None:intergenic |
| ATTAACAAGTGAACCAAACA+AGG | 0.618419 | 4_1:-82622486 | Msa0578130:CDS |
| GAAGGGGAGGCAATAATCAA+AGG | 0.625643 | 4_1:+82622362 | None:intergenic |
| GCAAGACGATTAACCCAACT+AGG | 0.629110 | 4_1:+82625245 | None:intergenic |
| GAGGCAATAATCAAAGGTGA+AGG | 0.662473 | 4_1:+82622368 | None:intergenic |
| TCTAGCTCTGGATTAAGACG+GGG | 0.680990 | 4_1:-82622416 | Msa0578130:CDS |
| GCTCTGGATTAAGACGGGGA+AGG | 0.690217 | 4_1:-82622412 | Msa0578130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTAAAATTAAT+TGG | + | chr4_1:82624051-82624070 | None:intergenic | 0.0% |
| !! | ATAAATTGAAATAATTAGTT+AGG | - | chr4_1:82622353-82622372 | Msa0578130:exon | 10.0% |
| !!! | TTTACATTTAATTTAAAGAA+AGG | - | chr4_1:82623486-82623505 | Msa0578130:intron | 10.0% |
| !! | TTTATATGCATTTAAATATA+TGG | - | chr4_1:82623628-82623647 | Msa0578130:intron | 10.0% |
| !!! | TTCAAAAAATTTTTTTACTA+GGG | + | chr4_1:82623829-82623848 | None:intergenic | 10.0% |
| !!! | ATTCAAAAAATTTTTTTACT+AGG | + | chr4_1:82623830-82623849 | None:intergenic | 10.0% |
| !!! | TATTAATTTTAAAATGCATA+AGG | - | chr4_1:82623523-82623542 | Msa0578130:intron | 10.0% |
| !! | TTTATATGCATTTAAATATA+TGG | - | chr4_1:82623628-82623647 | Msa0578130:intron | 10.0% |
| !! | AAAAAATGTATAATAAAAGT+AGG | - | chr4_1:82624724-82624743 | Msa0578130:intron | 10.0% |
| !!! | ATTTCAATTTATTTGTTTCT+TGG | + | chr4_1:82622345-82622364 | None:intergenic | 15.0% |
| !!! | TCAAAAAATGTATTTTTTCT+TGG | - | chr4_1:82622996-82623015 | Msa0578130:intron | 15.0% |
| !!! | CAAAAAATGTATTTTTTCTT+GGG | - | chr4_1:82622997-82623016 | Msa0578130:intron | 15.0% |
| !!! | AAAAGTATTTTACAAGTATT+AGG | + | chr4_1:82623423-82623442 | None:intergenic | 15.0% |
| !!! | TAATTTTAAAATGCATAAGT+TGG | - | chr4_1:82623526-82623545 | Msa0578130:intron | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr4_1:82623858-82623877 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr4_1:82623859-82623878 | None:intergenic | 15.0% |
| !! | AGATCTTTGAATTAAAATTT+GGG | + | chr4_1:82624149-82624168 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCTTCCTGTTT+TGG | - | chr4_1:82622296-82622315 | Msa0578130:three_prime_UTR | 20.0% |
| !!! | ACAATCTTTTGATAAGTTTT+AGG | - | chr4_1:82622670-82622689 | Msa0578130:intron | 20.0% |
| !! | AATATCTACGAAACAAAAAT+TGG | - | chr4_1:82622810-82622829 | Msa0578130:intron | 20.0% |
| !!! | ATTTACATTTGCTATAAATG+TGG | - | chr4_1:82622880-82622899 | Msa0578130:intron | 20.0% |
| !!! | GATCAAGTCAAATTTTTTAT+TGG | - | chr4_1:82622947-82622966 | Msa0578130:intron | 20.0% |
| !! | TAAAATAATACAACCAACAA+TGG | + | chr4_1:82623176-82623195 | None:intergenic | 20.0% |
| !!! | ATTAGGCTAAAATATTCTTT+TGG | - | chr4_1:82623771-82623790 | Msa0578130:intron | 20.0% |
| !! | AATTAAAAAAAACTGCAGAA+AGG | - | chr4_1:82624060-82624079 | Msa0578130:intron | 20.0% |
| !! | ATTAAAAAAAACTGCAGAAA+GGG | - | chr4_1:82624061-82624080 | Msa0578130:intron | 20.0% |
| !! | GATCTTTGAATTAAAATTTG+GGG | + | chr4_1:82624148-82624167 | None:intergenic | 20.0% |
| !! | CAGATCTTTGAATTAAAATT+TGG | + | chr4_1:82624150-82624169 | None:intergenic | 20.0% |
| !!! | TAATTTTAAAATGCATAAGG+TGG | - | chr4_1:82624345-82624364 | Msa0578130:intron | 20.0% |
| !! | TCTTCGTAACAAAAAAAAAT+AGG | - | chr4_1:82624694-82624713 | Msa0578130:intron | 20.0% |
| !!! | ATTTTAAACATCAAGATGAA+GGG | + | chr4_1:82625116-82625135 | None:intergenic | 20.0% |
| !!! | TTATTAATTTTGTCAAGAGA+TGG | - | chr4_1:82625328-82625347 | Msa0578130:CDS | 20.0% |
| !!! | TATTAATTTTGTCAAGAGAT+GGG | - | chr4_1:82625329-82625348 | Msa0578130:CDS | 20.0% |
| ! | AATAATTAGTTAGGTGAAAG+TGG | - | chr4_1:82622362-82622381 | Msa0578130:CDS | 25.0% |
| ! | ATAATTAGTTAGGTGAAAGT+GGG | - | chr4_1:82622363-82622382 | Msa0578130:CDS | 25.0% |
| !! | TAATTAGTTTCTGTTTGACT+AGG | - | chr4_1:82622584-82622603 | Msa0578130:CDS | 25.0% |
| !!! | ATAAGTTTTAGGCTGAATTT+AGG | - | chr4_1:82622681-82622700 | Msa0578130:intron | 25.0% |
| !!! | TAAGTTTTAGGCTGAATTTA+GGG | - | chr4_1:82622682-82622701 | Msa0578130:intron | 25.0% |
| !!! | GAGATTATAGTTGATAATGA+TGG | - | chr4_1:82622912-82622931 | Msa0578130:intron | 25.0% |
| ! | ATTATAAGTCTTTCACCATT+TGG | - | chr4_1:82623144-82623163 | Msa0578130:intron | 25.0% |
| ! | AAAATGTGAATAGATGATGT+GGG | - | chr4_1:82623335-82623354 | Msa0578130:intron | 25.0% |
| ! | TATACGCAATTAAATGACAT+TGG | - | chr4_1:82623390-82623409 | Msa0578130:intron | 25.0% |
| ! | TTCCCATGTATAAAAAAATG+TGG | - | chr4_1:82623726-82623745 | Msa0578130:intron | 25.0% |
| ! | TCCCATGTATAAAAAAATGT+GGG | - | chr4_1:82623727-82623746 | Msa0578130:intron | 25.0% |
| !!! | TCCCACATTTTTTTATACAT+GGG | + | chr4_1:82623731-82623750 | None:intergenic | 25.0% |
| !!! | TTCCCACATTTTTTTATACA+TGG | + | chr4_1:82623732-82623751 | None:intergenic | 25.0% |
| !!! | AATATAGTGAGTTTGAGTTT+TGG | - | chr4_1:82623802-82623821 | Msa0578130:intron | 25.0% |
| ! | TAAATGATATAATTGCCATG+TGG | + | chr4_1:82623971-82623990 | None:intergenic | 25.0% |
| ! | TTAAAAAAAACTGCAGAAAG+GGG | - | chr4_1:82624062-82624081 | Msa0578130:intron | 25.0% |
| !! | TTTGTGAGATTCATTTTCAT+GGG | + | chr4_1:82624218-82624237 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATTCATTTTCA+TGG | + | chr4_1:82624219-82624238 | None:intergenic | 25.0% |
| ! | TTCCCATGTATAAAAAAATG+TGG | - | chr4_1:82623726-82623745 | Msa0578130:intron | 25.0% |
| ! | TCCCATGTATAAAAAAATGT+GGG | - | chr4_1:82623727-82623746 | Msa0578130:intron | 25.0% |
| !!! | TCCCACATTTTTTTATACAT+GGG | + | chr4_1:82623731-82623750 | None:intergenic | 25.0% |
| !!! | TTCCCACATTTTTTTATACA+TGG | + | chr4_1:82623732-82623751 | None:intergenic | 25.0% |
| ! | TCTTGTACGTACAAATTATA+TGG | - | chr4_1:82624572-82624591 | Msa0578130:intron | 25.0% |
| ! | AAGCAATGTTTATCTCAATA+AGG | + | chr4_1:82624828-82624847 | None:intergenic | 25.0% |
| ! | AACATTGCTTATATTATTGC+AGG | - | chr4_1:82624838-82624857 | Msa0578130:intron | 25.0% |
| ! | ATTGTTTGTCTTCTATTCTA+TGG | + | chr4_1:82624924-82624943 | None:intergenic | 25.0% |
| !! | TTTTAAACATCAAGATGAAG+GGG | + | chr4_1:82625115-82625134 | None:intergenic | 25.0% |
| !! | GATTTTAAACATCAAGATGA+AGG | + | chr4_1:82625117-82625136 | None:intergenic | 25.0% |
| ! | GATAGCAACTATTGTAAAAT+TGG | + | chr4_1:82625173-82625192 | None:intergenic | 25.0% |
| ! | GATATAAAAAAAAACCAGCA+AGG | - | chr4_1:82625285-82625304 | Msa0578130:CDS | 25.0% |
| !! | ATTAATTTTGTCAAGAGATG+GGG | - | chr4_1:82625330-82625349 | Msa0578130:CDS | 25.0% |
| TGGAAATTCTATACCTAGTT+GGG | - | chr4_1:82622200-82622219 | Msa0578130:three_prime_UTR | 30.0% | |
| ACATGATCTATATCCAAAAC+AGG | + | chr4_1:82622312-82622331 | None:intergenic | 30.0% | |
| !! | TGTTTTGGATATAGATCATG+TGG | - | chr4_1:82622311-82622330 | Msa0578130:three_prime_UTR | 30.0% |
| AAATGAAACACTGAGCAATT+TGG | + | chr4_1:82622453-82622472 | None:intergenic | 30.0% | |
| AATCAAGATATCATAGTCGT+TGG | + | chr4_1:82622512-82622531 | None:intergenic | 30.0% | |
| ! | ATTAGTCACTTTCACAGATT+TGG | + | chr4_1:82622568-82622587 | None:intergenic | 30.0% |
| CTTGATCAAAATCTTCACAA+CGG | + | chr4_1:82622852-82622871 | None:intergenic | 30.0% | |
| TAATACAACCAACAATGGAT+TGG | + | chr4_1:82623171-82623190 | None:intergenic | 30.0% | |
| ATTAAGCAAATAGTCTCCAA+TGG | + | chr4_1:82623280-82623299 | None:intergenic | 30.0% | |
| GAAAATGTGAATAGATGATG+TGG | - | chr4_1:82623334-82623353 | Msa0578130:intron | 30.0% | |
| GTGTCTTGTACGTATAAATT+AGG | - | chr4_1:82623754-82623773 | Msa0578130:intron | 30.0% | |
| TCAAACTCACTATATTTGCA+GGG | + | chr4_1:82623798-82623817 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTAAAATGGTCCC+TGG | - | chr4_1:82623869-82623888 | Msa0578130:intron | 30.0% |
| !!! | TGTTTTTTAAAATGGTCCCT+GGG | - | chr4_1:82623870-82623889 | Msa0578130:intron | 30.0% |
| TGACAAATCAGCAAAAAAGT+GGG | + | chr4_1:82623896-82623915 | None:intergenic | 30.0% | |
| TAAAAAAAACTGCAGAAAGG+GGG | - | chr4_1:82624063-82624082 | Msa0578130:intron | 30.0% | |
| ACATATCAACTGCTAAGAAA+TGG | + | chr4_1:82624653-82624672 | None:intergenic | 30.0% | |
| ! | GAACTTTTATGCTAAACTTC+CGG | - | chr4_1:82624785-82624804 | Msa0578130:intron | 30.0% |
| GGTGATAGATATCTTAATTC+CGG | + | chr4_1:82624807-82624826 | None:intergenic | 30.0% | |
| ! | TTTTGTTGAGTTCAATGTCA+CGG | + | chr4_1:82624887-82624906 | None:intergenic | 30.0% |
| ATTAACAAGTGAACCAAACA+AGG | - | chr4_1:82624972-82624991 | Msa0578130:intron | 30.0% | |
| CTTGAAACATTAACCTTGTT+TGG | + | chr4_1:82624988-82625007 | None:intergenic | 30.0% | |
| ATTCAATATGTTGCCTTTCT+TGG | + | chr4_1:82625202-82625221 | None:intergenic | 30.0% | |
| CACAAGCATCATTGCAAAAA+TGG | + | chr4_1:82622170-82622189 | None:intergenic | 35.0% | |
| CTGGAAATTCTATACCTAGT+TGG | - | chr4_1:82622199-82622218 | Msa0578130:three_prime_UTR | 35.0% | |
| GTTAATCGTCTTGCTAGAAT+TGG | - | chr4_1:82622222-82622241 | Msa0578130:three_prime_UTR | 35.0% | |
| GAGTAGTAACAACAACTAGT+AGG | + | chr4_1:82622261-82622280 | None:intergenic | 35.0% | |
| ! | GGGATATAAGAACCTTTTCT+CGG | - | chr4_1:82622702-82622721 | Msa0578130:intron | 35.0% |
| ! | TAAGAACCTTTTCTCGGAAT+AGG | - | chr4_1:82622708-82622727 | Msa0578130:intron | 35.0% |
| AACTTTCCTATTCCGAGAAA+AGG | + | chr4_1:82622717-82622736 | None:intergenic | 35.0% | |
| AATCCTTAAACACGTGATCA+GGG | + | chr4_1:82623127-82623146 | None:intergenic | 35.0% | |
| TAATCCTTAAACACGTGATC+AGG | + | chr4_1:82623128-82623147 | None:intergenic | 35.0% | |
| ATCAAAATCCTCAAGACCAT+TGG | - | chr4_1:82623261-82623280 | Msa0578130:intron | 35.0% | |
| ! | TGCTACACGTTGAATTTGTT+AGG | - | chr4_1:82623299-82623318 | Msa0578130:intron | 35.0% |
| !! | GGGAGAGTTACTTTAGAATT+AGG | - | chr4_1:82623355-82623374 | Msa0578130:intron | 35.0% |
| CTCAAACTCACTATATTTGC+AGG | + | chr4_1:82623799-82623818 | None:intergenic | 35.0% | |
| GTGACAAATCAGCAAAAAAG+TGG | + | chr4_1:82623897-82623916 | None:intergenic | 35.0% | |
| ATGATATAATTGCCATGTGG+AGG | + | chr4_1:82623968-82623987 | None:intergenic | 35.0% | |
| ATCTACAATCTCTAACACAC+AGG | - | chr4_1:82624171-82624190 | Msa0578130:intron | 35.0% | |
| AAGTGAATGCCTTTCTTTAG+TGG | + | chr4_1:82624317-82624336 | None:intergenic | 35.0% | |
| ACATTTGTCATATGTGACGT+AGG | - | chr4_1:82624610-82624629 | Msa0578130:intron | 35.0% | |
| ! | TTCTTAGCAGTTGATATGTG+TGG | - | chr4_1:82624654-82624673 | Msa0578130:intron | 35.0% |
| TTTGTTGAGTTCAATGTCAC+GGG | + | chr4_1:82624886-82624905 | None:intergenic | 35.0% | |
| TGCTATCAACAAACCAAGAA+AGG | - | chr4_1:82625186-82625205 | Msa0578130:intron | 35.0% | |
| ATTAGTACATGATTCCTTGC+TGG | + | chr4_1:82625302-82625321 | None:intergenic | 35.0% | |
| GATGCTTGTGTTAAGCTTAC+TGG | - | chr4_1:82622180-82622199 | Msa0578130:three_prime_UTR | 40.0% | |
| ATCCTTAAACACGTGATCAG+GGG | + | chr4_1:82623126-82623145 | None:intergenic | 40.0% | |
| !! | CAACAATGGATTGGTCCAAA+TGG | + | chr4_1:82623162-82623181 | None:intergenic | 40.0% |
| CATTTGGACCAATCCATTGT+TGG | - | chr4_1:82623160-82623179 | Msa0578130:intron | 40.0% | |
| ! | AATAGTCTCCAATGGTCTTG+AGG | + | chr4_1:82623272-82623291 | None:intergenic | 40.0% |
| !! | TTTTCATGGGTGTGGTTTTG+AGG | + | chr4_1:82624205-82624224 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCATGGGTG+TGG | + | chr4_1:82624213-82624232 | None:intergenic | 40.0% |
| GATTTGTGAGTGTGCAGATT+TGG | + | chr4_1:82624263-82624282 | None:intergenic | 40.0% | |
| !!! | CTGGGTTTTGGGTTTTGATA+TGG | + | chr4_1:82624292-82624311 | None:intergenic | 40.0% |
| !! | CTTCTAGCTCTGGATTAAGA+CGG | - | chr4_1:82625040-82625059 | Msa0578130:intron | 40.0% |
| !! | TTCTAGCTCTGGATTAAGAC+GGG | - | chr4_1:82625041-82625060 | Msa0578130:intron | 40.0% |
| ATAATCAAAGGTGAAGGTGG+AGG | + | chr4_1:82625087-82625106 | None:intergenic | 40.0% | |
| GCAATAATCAAAGGTGAAGG+TGG | + | chr4_1:82625090-82625109 | None:intergenic | 40.0% | |
| GAGGCAATAATCAAAGGTGA+AGG | + | chr4_1:82625093-82625112 | None:intergenic | 40.0% | |
| TAAACATCAAGATGAAGGGG+AGG | + | chr4_1:82625112-82625131 | None:intergenic | 40.0% | |
| GCAAGACGATTAACCCAACT+AGG | + | chr4_1:82622216-82622235 | None:intergenic | 45.0% | |
| AAGTGGGAGCAACATGTAAG+CGG | - | chr4_1:82622379-82622398 | Msa0578130:CDS | 45.0% | |
| GAGCAACATGTAAGCGGTAA+CGG | - | chr4_1:82622385-82622404 | Msa0578130:CDS | 45.0% | |
| ! | TGTAAGCGGTAACGGTACAT+CGG | - | chr4_1:82622393-82622412 | Msa0578130:CDS | 45.0% |
| CATAGTCGTTGGATCGAGAT+TGG | + | chr4_1:82622501-82622520 | None:intergenic | 45.0% | |
| ! | AACACGTGATCAGGGGTTTT+TGG | + | chr4_1:82623119-82623138 | None:intergenic | 45.0% |
| AACCCCTGATCACGTGTTTA+AGG | - | chr4_1:82623121-82623140 | Msa0578130:intron | 45.0% | |
| TTGTCACATTTCTGCCTACG+TGG | - | chr4_1:82623910-82623929 | Msa0578130:intron | 45.0% | |
| !! | CTTTAGTGGCACTGGGTTTT+GGG | + | chr4_1:82624303-82624322 | None:intergenic | 45.0% |
| !! | TCTTTAGTGGCACTGGGTTT+TGG | + | chr4_1:82624304-82624323 | None:intergenic | 45.0% |
| ! | AACCCAGTGCCACTAAAGAA+AGG | - | chr4_1:82624305-82624324 | Msa0578130:intron | 45.0% |
| TGCCTTTCTTTAGTGGCACT+GGG | + | chr4_1:82624310-82624329 | None:intergenic | 45.0% | |
| ATGCCTTTCTTTAGTGGCAC+TGG | + | chr4_1:82624311-82624330 | None:intergenic | 45.0% | |
| !! | ACCTTCAAGAGCATCTTCAC+CGG | - | chr4_1:82625014-82625033 | Msa0578130:intron | 45.0% |
| AATCCAGAGCTAGAAGAAGC+CGG | + | chr4_1:82625036-82625055 | None:intergenic | 45.0% | |
| !! | TCTAGCTCTGGATTAAGACG+GGG | - | chr4_1:82625042-82625061 | Msa0578130:intron | 45.0% |
| GAAGGGGAGGCAATAATCAA+AGG | + | chr4_1:82625099-82625118 | None:intergenic | 45.0% | |
| !!! | GTTTTTTTTTTTTTTTTTTA+AGG | - | chr4_1:82622626-82622645 | Msa0578130:intron | 5.0% |
| !!! | AAATTTTTTGTTTTTTAAAA+TGG | - | chr4_1:82623862-82623881 | Msa0578130:intron | 5.0% |
| CGTCTAATCTCGACCCAAGT+GGG | + | chr4_1:82622428-82622447 | None:intergenic | 50.0% | |
| CCACTTGGGTCGAGATTAGA+CGG | - | chr4_1:82622426-82622445 | Msa0578130:CDS | 50.0% | |
| TCAGCAAAAAAGTGGGCCCA+GGG | + | chr4_1:82623889-82623908 | None:intergenic | 50.0% | |
| ATCAGCAAAAAAGTGGGCCC+AGG | + | chr4_1:82623890-82623909 | None:intergenic | 50.0% | |
| TTGCCATGTGGAGGACATGT+GGG | + | chr4_1:82623959-82623978 | None:intergenic | 50.0% | |
| ATTGCCATGTGGAGGACATG+TGG | + | chr4_1:82623960-82623979 | None:intergenic | 50.0% | |
| ! | AAGCGGTAACGGTACATCGG+AGG | - | chr4_1:82622396-82622415 | Msa0578130:CDS | 55.0% |
| ATCGGAGGTTGTTGCCCACT+TGG | - | chr4_1:82622411-82622430 | Msa0578130:CDS | 55.0% | |
| TCGGAGGTTGTTGCCCACTT+GGG | - | chr4_1:82622412-82622431 | Msa0578130:CDS | 55.0% | |
| CCGTCTAATCTCGACCCAAG+TGG | + | chr4_1:82622429-82622448 | None:intergenic | 55.0% | |
| ACAGTCAGCAACTGCCACGT+AGG | + | chr4_1:82623927-82623946 | None:intergenic | 55.0% | |
| TTGCCCACATGTCCTCCACA+TGG | - | chr4_1:82623953-82623972 | Msa0578130:intron | 55.0% | |
| GCCGGTGAAGATGCTCTTGA+AGG | + | chr4_1:82625018-82625037 | None:intergenic | 55.0% | |
| !! | TCACCGGCTTCTTCTAGCTC+TGG | - | chr4_1:82625030-82625049 | Msa0578130:intron | 55.0% |
| ! | GCTCTGGATTAAGACGGGGA+AGG | - | chr4_1:82625046-82625065 | Msa0578130:intron | 55.0% |
| GATTAAGACGGGGAAGGAGC+AGG | - | chr4_1:82625052-82625071 | Msa0578130:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82622123 | 82625357 | 82622123 | ID=Msa0578130;Name=Msa0578130 |
| chr4_1 | mRNA | 82622123 | 82625357 | 82622123 | ID=Msa0578130-mRNA-1;Parent=Msa0578130;Name=Msa0578130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|0|0.5|2|232|128 |
| chr4_1 | exon | 82622123 | 82622620 | 82622123 | ID=Msa0578130-mRNA-1:exon:29944;Parent=Msa0578130-mRNA-1 |
| chr4_1 | exon | 82625237 | 82625357 | 82625237 | ID=Msa0578130-mRNA-1:exon:29943;Parent=Msa0578130-mRNA-1 |
| chr4_1 | CDS | 82625237 | 82625357 | 82625237 | ID=Msa0578130-mRNA-1:cds;Parent=Msa0578130-mRNA-1 |
| chr4_1 | CDS | 82622355 | 82622620 | 82622355 | ID=Msa0578130-mRNA-1:cds;Parent=Msa0578130-mRNA-1 |
| chr4_1 | three_prime_UTR | 82622123 | 82622354 | 82622123 | ID=Msa0578130-mRNA-1:three_prime_utr;Parent=Msa0578130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
