AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578440 MtrunA17_Chr1g0203761 94.969 159 5 1 272 427 41 199 2.36e-100 305
Msa0578440 MtrunA17_Chr2g0325911 57.647 85 14 1 452 514 245 329 2.41e-21 97.1
Msa0578440 MtrunA17_Chr4g0073341 95.122 41 2 0 183 223 143 183 1.59e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578440 AT5G52100.1 75.316 158 36 1 272 426 36 193 8.49e-78 247

Find 174 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATATGTTTCTCTCTTTC+TGG 0.044768 4_1:-83017534 Msa0578440:CDS
GACTAACTTTGATCTGAATT+TGG 0.097622 4_1:-83017459 Msa0578440:CDS
TTCAAACCTGAGTTTGTTTA+TGG 0.100230 4_1:-83017000 Msa0578440:exon
ATCCTGATCCACACGCTTTA+TGG 0.119105 4_1:+83019704 None:intergenic
AGTAAAGGAAAGATAATAAT+AGG 0.187247 4_1:-83016318 Msa0578440:three_prime_UTR
AAATGACCTTACTATGGTTT+TGG 0.191058 4_1:-83019223 Msa0578440:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 4_1:-83019524 Msa0578440:intron
AACAGAAGATAGTTGATTAT+TGG 0.224941 4_1:-83016968 Msa0578440:three_prime_UTR
AATCAACTATCTTCTGTTAT+AGG 0.232152 4_1:+83016973 None:intergenic
AACCTCTAATTTCTTTAATC+AGG 0.254932 4_1:-83020908 Msa0578440:CDS
GTTTGGGAAATTCAAGTTCT+AGG 0.258236 4_1:-83020720 Msa0578440:CDS
TCACGATTTGGATTTAAGTT+TGG 0.266590 4_1:-83020737 Msa0578440:CDS
AGTTTAAAGTTGATTGGTTT+GGG 0.270369 4_1:-83020682 Msa0578440:CDS
TTTCTCTCTTTCTGGAAATC+AGG 0.272997 4_1:-83017526 Msa0578440:CDS
AGAGATAAAGTATGTTATAT+TGG 0.274675 4_1:-83020227 Msa0578440:CDS
CACGATTTGGATTTAAGTTT+GGG 0.283505 4_1:-83020736 Msa0578440:CDS
CAATTTCGACGTTGCGGTAA+TGG 0.296694 4_1:+83018326 None:intergenic
GAGATATTTGCAAGGCTATA+TGG 0.304291 4_1:+83016463 None:intergenic
GCCAGAGGAATGGAAGTTTC+TGG 0.306822 4_1:-83019455 Msa0578440:CDS
TTATGATAGGCAATCCTATC+TGG 0.308805 4_1:+83016291 None:intergenic
GCAGATGATGATTACATATC+AGG 0.313619 4_1:-83016602 Msa0578440:intron
CACTGATACAAGAGCCTTGA+TGG 0.321757 4_1:-83016568 Msa0578440:three_prime_UTR
GCATCCTCGAAGGAGTTTAA+AGG 0.331002 4_1:-83017360 Msa0578440:intron
GATTGGTTTGGGGTTTGTTT+TGG 0.332195 4_1:-83020671 Msa0578440:intron
ACTAACTTTGATCTGAATTT+GGG 0.334405 4_1:-83017458 Msa0578440:CDS
TATGATAATGAACTTAATTC+TGG 0.336630 4_1:-83020874 Msa0578440:intron
AGAAGAGGGGTGAGAAGAAC+GGG 0.338133 4_1:-83021839 Msa0578440:CDS
GAGAGGAGAAGAAGAGAAAA+CGG 0.340003 4_1:-83021792 Msa0578440:CDS
TATACTAAATGACCTTACTA+TGG 0.353599 4_1:-83019229 Msa0578440:CDS
GCTCTAAAGTTCTTGTCATT+TGG 0.355199 4_1:-83017641 Msa0578440:intron
CAACATGTTGGGGAAGATAT+TGG 0.357960 4_1:-83019419 Msa0578440:CDS
CCAGAAAGAGAGAAACATAT+TGG 0.358725 4_1:+83017534 None:intergenic
CAAGGATGTGCAGCCTTATG+AGG 0.363133 4_1:+83016830 None:intergenic
ACTATATAGGCAACAACATT+TGG 0.363452 4_1:-83018699 Msa0578440:intron
GACTACAACCGCTGTGGCCT+TGG 0.364137 4_1:+83019081 None:intergenic
ATATGGTATAAGTATTTAAT+CGG 0.365194 4_1:+83016480 None:intergenic
TAATAATAGGGTTTCCAGAT+AGG 0.365703 4_1:-83016305 Msa0578440:three_prime_UTR
ATTTCACATTACCTGAGATA+TGG 0.385396 4_1:+83019197 None:intergenic
TAGTTTAAAGTTGATTGGTT+TGG 0.387804 4_1:-83020683 Msa0578440:CDS
TCCCATAAAGCGTGTGGATC+AGG 0.389891 4_1:-83019706 Msa0578440:CDS
GAGATAAAGTATGTTATATT+GGG 0.394913 4_1:-83020226 Msa0578440:CDS
TCCTGATCCACACGCTTTAT+GGG 0.396006 4_1:+83019705 None:intergenic
GTGAAGTGAGGTCGAGGGAG+AGG 0.398061 4_1:-83021809 Msa0578440:CDS
GTACATGCCGCGGATCAAAT+TGG 0.402326 4_1:-83018661 Msa0578440:CDS
ATGCATAGGGCCAATCAGTT+GGG 0.408330 4_1:+83016385 None:intergenic
CTATTGATACTCAACATGTT+GGG 0.408524 4_1:-83019430 Msa0578440:CDS
TACCTGATTAAAGAAATTAG+AGG 0.410994 4_1:+83020906 None:intergenic
CTGTAATAATATTGATCCTA+TGG 0.411160 4_1:+83018372 None:intergenic
TAATGCTGCAGATCACGATT+TGG 0.415240 4_1:-83020749 Msa0578440:CDS
AAGAAGAGGGGTGAGAAGAA+CGG 0.421145 4_1:-83021840 Msa0578440:CDS
TTCTCTCTTTCTGGAAATCA+GGG 0.422990 4_1:-83017525 Msa0578440:CDS
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 4_1:+83016773 None:intergenic
GATTCTACTGTTTATGACCT+TGG 0.432051 4_1:-83019684 Msa0578440:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 4_1:+83018602 None:intergenic
TTTGGGAAATTCAAGTTCTA+GGG 0.437787 4_1:-83020719 Msa0578440:CDS
CTTATTCCAGGTTTCATCCA+TGG 0.441827 4_1:-83017074 Msa0578440:intron
GTAAAGGAAAGATAATAATA+GGG 0.442334 4_1:-83016317 Msa0578440:three_prime_UTR
TCCAGAAACTTCCATTCCTC+TGG 0.445225 4_1:+83019454 None:intergenic
CAGATTCAGTGGAATCTGTA+AGG 0.450140 4_1:-83016754 Msa0578440:three_prime_UTR
TTGCAGACTATTTGTAAGCC+AGG 0.450460 4_1:+83016234 None:intergenic
AAAGAAGTGAAGTGAGGTCG+AGG 0.452164 4_1:-83021815 Msa0578440:CDS
TCTTACATTTGCATTAGCCT+TGG 0.452314 4_1:+83018297 None:intergenic
GCAAATTATTATAAGAGTAA+AGG 0.452896 4_1:-83016333 Msa0578440:three_prime_UTR
ATAACAAACGAAATATTTGA+TGG 0.458452 4_1:-83016432 Msa0578440:three_prime_UTR
GGTGAGGTCTAAATCTTTCA+AGG 0.460191 4_1:+83016812 None:intergenic
GAAGAAGAGAAAACGGGTAC+GGG 0.462651 4_1:-83021785 Msa0578440:CDS
TACATAGCAGAAATTCTTTG+AGG 0.464491 4_1:-83016921 Msa0578440:three_prime_UTR
AAGAAGAAGGAAAACAGAAC+GGG 0.464978 4_1:-83021869 Msa0578440:CDS
TTCATCCATGGGCTCTTCAC+AGG 0.471535 4_1:-83017062 Msa0578440:CDS
AAACGGGTACGGGAGAAAGA+AGG 0.472509 4_1:-83021775 Msa0578440:CDS
GAAATATTTGATGGTGCTAA+AGG 0.477207 4_1:-83016423 Msa0578440:three_prime_UTR
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 4_1:+83016712 None:intergenic
TTAAACTCCTTCGAGGATGC+AGG 0.479138 4_1:+83017363 None:intergenic
ACAAATAGTCTGCAATGAAA+AGG 0.479215 4_1:-83016226 Msa0578440:three_prime_UTR
CTTGCATAGCCTCTTCACTT+AGG 0.480071 4_1:+83016707 None:intergenic
TTTGTGAGTTATGGGTGAGA+GGG 0.483586 4_1:+83021692 None:intergenic
TATACCTTTAAACTCCTTCG+AGG 0.483660 4_1:+83017356 None:intergenic
ATCATGTATCTCCTTATGAT+AGG 0.485561 4_1:+83016278 None:intergenic
TTTCCTGTAGCTTTGTGGGA+TGG 0.487021 4_1:-83019271 Msa0578440:intron
GATGGAAAGAAGAAGGAAGA+AGG 0.490833 4_1:-83021345 Msa0578440:CDS
TTATTCCAGGTTTCATCCAT+GGG 0.490950 4_1:-83017073 Msa0578440:intron
CATGGGCTCTTCACAGGAAG+TGG 0.492997 4_1:-83017056 Msa0578440:CDS
ACGGGTACGGGAGAAAGAAG+GGG 0.495118 4_1:-83021773 Msa0578440:CDS
CGGGTACGGGAGAAAGAAGG+GGG 0.496168 4_1:-83021772 Msa0578440:CDS
AGATAGGATTGCCTATCATA+AGG 0.496987 4_1:-83016289 Msa0578440:three_prime_UTR
GCTATTGATACTCAACATGT+TGG 0.498878 4_1:-83019431 Msa0578440:CDS
CACTTCCTGTGAAGAGCCCA+TGG 0.499204 4_1:+83017057 None:intergenic
TTCCTTGAGTCTCTCTTGTG+AGG 0.500081 4_1:+83017024 None:intergenic
ATGGAAAGAAGAAGGAAGAA+GGG 0.501486 4_1:-83021344 Msa0578440:CDS
ATGATACATGATATTAGAAA+AGG 0.502189 4_1:-83016260 Msa0578440:three_prime_UTR
AACGGGTACGGGAGAAAGAA+GGG 0.502357 4_1:-83021774 Msa0578440:CDS
AACTGATTGGCCCTATGCAT+GGG 0.502435 4_1:-83016382 Msa0578440:three_prime_UTR
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 4_1:-83016548 Msa0578440:three_prime_UTR
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 4_1:-83018388 Msa0578440:CDS
TGATGCAGATGGAAAGAAGA+AGG 0.510322 4_1:-83021352 Msa0578440:CDS
CAACTGATTGGCCCTATGCA+TGG 0.512282 4_1:-83016383 Msa0578440:three_prime_UTR
CTCTGGTGTATGCAGCAAGA+AGG 0.513021 4_1:+83016790 None:intergenic
AGGATCAATATTATTACAGC+AGG 0.513741 4_1:-83018368 Msa0578440:CDS
TGTAGGAGCATTCCCTCATA+AGG 0.514702 4_1:-83016843 Msa0578440:three_prime_UTR
TTTAACTTCTTCAGATTCAG+TGG 0.515006 4_1:-83016765 Msa0578440:three_prime_UTR
CTTTGATCTGAATTTGGGCA+TGG 0.516010 4_1:-83017453 Msa0578440:CDS
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 4_1:-83016555 Msa0578440:three_prime_UTR
TGGAGCCCAAAACCATAGTA+AGG 0.517913 4_1:+83019217 None:intergenic
ACTATAACGTCAGGGTGTCT+TGG 0.518817 4_1:-83018410 Msa0578440:intron
TTACCGCAACGTCGAAATTG+TGG 0.519053 4_1:-83018323 Msa0578440:CDS
GGGAATGCATTGTTCAAAGC+TGG 0.521453 4_1:-83021324 Msa0578440:CDS
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 4_1:+83019231 None:intergenic
ATGCAAGTTGAGGAAGAAGA+AGG 0.525389 4_1:+83021718 None:intergenic
AGAGGAGAAGAAGAGAAAAC+GGG 0.525782 4_1:-83021791 Msa0578440:CDS
ACATTGTCATATACTGCAGA+AGG 0.525891 4_1:+83019046 None:intergenic
GAGAGGGAGTATGCAAGTTG+AGG 0.526483 4_1:+83021708 None:intergenic
AAGAAGTGAAGTGAGGTCGA+GGG 0.527158 4_1:-83021814 Msa0578440:CDS
CATGCATAGGGCCAATCAGT+TGG 0.529277 4_1:+83016384 None:intergenic
AGAAGAAGAGAAAACGGGTA+CGG 0.530002 4_1:-83021786 Msa0578440:CDS
TATATGAGAAACTATGAACT+TGG 0.533433 4_1:-83016172 Msa0578440:three_prime_UTR
AAAGAAGATTGATGCAGATG+AGG 0.536126 4_1:-83021382 Msa0578440:CDS
TATTAAATGACAGAATCATC+AGG 0.536179 4_1:-83020772 Msa0578440:intron
TCCAGCTTTGAACTCCATCA+AGG 0.536851 4_1:+83016554 None:intergenic
GAGGAAAGAATTGATGCAGA+TGG 0.541097 4_1:-83021363 Msa0578440:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.543811 4_1:-83019513 Msa0578440:CDS
AAAGAAGAAGGAAAACAGAA+CGG 0.544682 4_1:-83021870 Msa0578440:CDS
TCTAAAATGCAAGGGAAGAG+AGG 0.545819 4_1:-83017486 Msa0578440:CDS
CGTCGAAATTGTGGAATCCA+AGG 0.546529 4_1:-83018314 Msa0578440:CDS
AGAACGGGACAGAGAAGAAG+AGG 0.547172 4_1:-83021854 Msa0578440:CDS
TTTGATTCCCATAAAGCGTG+TGG 0.552857 4_1:-83019712 Msa0578440:CDS
TGTTGGGGAAGATATTGGAC+AGG 0.558324 4_1:-83019414 Msa0578440:intron
TGCAGACTATTTGTAAGCCA+GGG 0.558908 4_1:+83016235 None:intergenic
TGCATAGGGCCAATCAGTTG+GGG 0.559790 4_1:+83016386 None:intergenic
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 4_1:-83016716 Msa0578440:three_prime_UTR
GGCAAGCCATAAACAAACTC+AGG 0.560166 4_1:+83016994 None:intergenic
CAAAGCAGCTCTAAAATGCA+AGG 0.560883 4_1:-83017495 Msa0578440:CDS
GAACGGGACAGAGAAGAAGA+GGG 0.568054 4_1:-83021853 Msa0578440:CDS
AAGGATGTGCAGCCTTATGA+GGG 0.571624 4_1:+83016831 None:intergenic
ATTGATCCTATGGAAAGCGT+TGG 0.571844 4_1:+83018382 None:intergenic
AAGCTTCAATTACTCAACAA+TGG 0.573660 4_1:+83021665 None:intergenic
CTTCAATTACTCAACAATGG+AGG 0.576182 4_1:+83021668 None:intergenic
TGATATTAGAAAAGGATCCC+TGG 0.578018 4_1:-83016252 Msa0578440:three_prime_UTR
GACAAAATACAATTACTATG+AGG 0.578080 4_1:-83016360 Msa0578440:three_prime_UTR
TCTGGTGTATGCAGCAAGAA+GGG 0.579600 4_1:+83016791 None:intergenic
GCCGCGGATCAAATTGGATA+CGG 0.582539 4_1:-83018655 Msa0578440:CDS
GTCATCGATAAACTCACGAC+AGG 0.586511 4_1:-83019897 Msa0578440:intron
TAGAAAACAAAGTTTACAAG+TGG 0.593903 4_1:-83019950 Msa0578440:CDS
CAAGACTTTCAATATATGCA+TGG 0.601988 4_1:-83016083 Msa0578440:three_prime_UTR
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 4_1:-83019506 Msa0578440:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 4_1:-83019429 Msa0578440:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 4_1:+83019243 None:intergenic
GTTTAAAGTTGATTGGTTTG+GGG 0.604210 4_1:-83020681 Msa0578440:CDS
GAATCCTCTGAATTATACTC+AGG 0.606536 4_1:-83020131 Msa0578440:intron
AATAAATGGAGCAGCAAAGG+AGG 0.611168 4_1:-83019510 Msa0578440:CDS
TGTGACAAAAGCCAGAGGAA+TGG 0.613472 4_1:-83019465 Msa0578440:CDS
ATTGTCTGCATTCTGCGAGA+AGG 0.616513 4_1:-83018625 Msa0578440:CDS
TAGAAGGATTCATCACGTGT+AGG 0.618364 4_1:-83016860 Msa0578440:three_prime_UTR
ATTCCACAATTTCGACGTTG+CGG 0.630579 4_1:+83018320 None:intergenic
ACCGTATCCAATTTGATCCG+CGG 0.631428 4_1:+83018654 None:intergenic
CATTGTCATATACTGCAGAA+GGG 0.632959 4_1:+83019047 None:intergenic
CTGTCATTGAGATATTTGCA+AGG 0.632985 4_1:+83016455 None:intergenic
CTAACCTGAGTATAATTCAG+AGG 0.633689 4_1:+83020127 None:intergenic
CTTACAACCTGCATCCTCGA+AGG 0.638582 4_1:-83017370 Msa0578440:CDS
AAAATTCAACATCGAAACCA+AGG 0.638968 4_1:+83019667 None:intergenic
CAAGTTGAGGAAGAAGAAGG+AGG 0.639497 4_1:+83021721 None:intergenic
AAAGCAGCTCTAAAATGCAA+GGG 0.646780 4_1:-83017494 Msa0578440:CDS
ATTCTGCGAGAAGGCCAGCA+TGG 0.649764 4_1:-83018616 Msa0578440:intron
CATGAACCTAAAGAAAACAA+AGG 0.659528 4_1:-83017419 Msa0578440:CDS
AACGGGACAGAGAAGAAGAG+GGG 0.664023 4_1:-83021852 Msa0578440:CDS
AGCCTCACAAGAGAGACTCA+AGG 0.664869 4_1:-83017026 Msa0578440:CDS
TGTATGCAGCAAGAAGGGTG+AGG 0.675322 4_1:+83016796 None:intergenic
GGGTACGGGAGAAAGAAGGG+GGG 0.675465 4_1:-83021771 Msa0578440:CDS
TATATTGGGAGAGAAAGCTA+AGG 0.687081 4_1:-83020212 Msa0578440:CDS
GCATAGGGCCAATCAGTTGG+GGG 0.712704 4_1:+83016387 None:intergenic
ACGGGAAAAGAAGTGAAGTG+AGG 0.716190 4_1:-83021821 Msa0578440:CDS
TTTGCAGTCCAAGGCCACAG+CGG 0.725554 4_1:-83019089 Msa0578440:intron
TTAGCTGTGACAAAAGCCAG+AGG 0.726458 4_1:-83019470 Msa0578440:CDS
AAAGTGTTGTGTACATGCCG+CGG 0.742681 4_1:-83018671 Msa0578440:CDS
GAAATCGACTACAACCGCTG+TGG 0.746133 4_1:+83019075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAGAAGA+AGG - chr4_1:83016075-83016094 Msa0578440:three_prime_UTR 10.0%
!! AATTGATGTAAAAAATAAAT+GGG - chr4_1:83016761-83016780 Msa0578440:three_prime_UTR 10.0%
!!! TTTTTCCATATTTTTTTTTT+TGG - chr4_1:83016863-83016882 Msa0578440:three_prime_UTR 10.0%
!! AATGCAATTAATTATTAATT+AGG + chr4_1:83017166-83017185 None:intergenic 10.0%
!!! ATAATATGATGATATTTTAT+AGG + chr4_1:83021757-83021776 None:intergenic 10.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr4_1:83016760-83016779 Msa0578440:three_prime_UTR 15.0%
!!! AAAATATGGAAAAACATTTT+TGG + chr4_1:83016857-83016876 None:intergenic 15.0%
!!! AAATCAATAAAACAATTTTC+TGG + chr4_1:83016917-83016936 None:intergenic 15.0%
!!! AAATTGTTTTATTGATTTTC+AGG - chr4_1:83016919-83016938 Msa0578440:three_prime_UTR 15.0%
!!! AATTGTTTTATTGATTTTCA+GGG - chr4_1:83016920-83016939 Msa0578440:three_prime_UTR 15.0%
!!! TTTTATAGTTTAAAGTTGAT+TGG - chr4_1:83017269-83017288 Msa0578440:intron 15.0%
!!! AAATTTCTTAGATTTTCTAT+AGG - chr4_1:83020018-83020037 Msa0578440:intron 15.0%
!! AAAATAACAGTAAATTATGA+TGG + chr4_1:83020709-83020728 None:intergenic 15.0%
!! ATATGGTATAAGTATTTAAT+CGG + chr4_1:83021480-83021499 None:intergenic 15.0%
!!! TTCAATTTTCGTTTTTGATT+TGG - chr4_1:83016382-83016401 Msa0578440:three_prime_UTR 20.0%
!!! TTTAATTGATGTTTTTTTCC+TGG - chr4_1:83016497-83016516 Msa0578440:three_prime_UTR 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr4_1:83016766-83016785 Msa0578440:three_prime_UTR 20.0%
!! CAATAACAATACTAATTACT+TGG - chr4_1:83016822-83016841 Msa0578440:three_prime_UTR 20.0%
!! CGAAACCAAAAAAAAAAATA+TGG + chr4_1:83016871-83016890 None:intergenic 20.0%
!!! ATTTTTTTTTTTGGTTTCGA+TGG - chr4_1:83016872-83016891 Msa0578440:three_prime_UTR 20.0%
!!! AGGGTTTGATTTTTTTATTA+GGG - chr4_1:83016939-83016958 Msa0578440:three_prime_UTR 20.0%
!!! TTGTTTTGATTTTAAGAGAA+AGG - chr4_1:83016964-83016983 Msa0578440:three_prime_UTR 20.0%
!!! TATGATAATGAACTTAATTC+TGG - chr4_1:83017083-83017102 Msa0578440:intron 20.0%
!! AGAGATAAAGTATGTTATAT+TGG - chr4_1:83017730-83017749 Msa0578440:intron 20.0%
!! GAGATAAAGTATGTTATATT+GGG - chr4_1:83017731-83017750 Msa0578440:intron 20.0%
!! TCCTAAATTAAATTGTTTCA+AGG - chr4_1:83017905-83017924 Msa0578440:intron 20.0%
!!! TCCTTGAAACAATTTAATTT+AGG + chr4_1:83017909-83017928 None:intergenic 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr4_1:83018650-83018669 Msa0578440:CDS 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr4_1:83018676-83018695 None:intergenic 20.0%
!! AAGTTGAAGTGTAAATTAAA+TGG - chr4_1:83018994-83019013 Msa0578440:intron 20.0%
!!! GTTTTTAAAGCAATTTTTCA+TGG - chr4_1:83019101-83019120 Msa0578440:intron 20.0%
!!! ACAAACATTCATATTTTAAG+TGG + chr4_1:83019721-83019740 None:intergenic 20.0%
!! TTAAAATATGAATGTTTGTC+CGG - chr4_1:83019722-83019741 Msa0578440:CDS 20.0%
!!! AAATTTGCATTTCAAGTAAA+TGG - chr4_1:83020764-83020783 Msa0578440:intron 20.0%
!! CATAGTAATAAAAAATAGCA+TGG + chr4_1:83020835-83020854 None:intergenic 20.0%
!!! ATCTTTTTCAAGAAATTAGA+AGG - chr4_1:83021081-83021100 Msa0578440:intron 20.0%
!! ATAACAAACGAAATATTTGA+TGG - chr4_1:83021525-83021544 Msa0578440:intron 20.0%
!! GCAAATTATTATAAGAGTAA+AGG - chr4_1:83021624-83021643 Msa0578440:intron 20.0%
!! AGTAAAGGAAAGATAATAAT+AGG - chr4_1:83021639-83021658 Msa0578440:intron 20.0%
!! GTAAAGGAAAGATAATAATA+GGG - chr4_1:83021640-83021659 Msa0578440:intron 20.0%
!! ATGATACATGATATTAGAAA+AGG - chr4_1:83021697-83021716 Msa0578440:CDS 20.0%
!!! AAACAAAAAAAGGGTATTTG+TGG + chr4_1:83016413-83016432 None:intergenic 25.0%
!!! ATACCCTTTTTTTGTTTGAT+TGG - chr4_1:83016416-83016435 Msa0578440:three_prime_UTR 25.0%
!!! TACCCTTTTTTTGTTTGATT+GGG - chr4_1:83016417-83016436 Msa0578440:three_prime_UTR 25.0%
! AACCCAATCAAACAAAAAAA+GGG + chr4_1:83016422-83016441 None:intergenic 25.0%
! AAACCCAATCAAACAAAAAA+AGG + chr4_1:83016423-83016442 None:intergenic 25.0%
!!! TCGATGGTTTTTTTTTTTTG+TGG - chr4_1:83016531-83016550 Msa0578440:three_prime_UTR 25.0%
!!! CGATGGTTTTTTTTTTTTGT+GGG - chr4_1:83016532-83016551 Msa0578440:three_prime_UTR 25.0%
!!! TTTTTTTTTTTGTGGGTTTC+TGG - chr4_1:83016539-83016558 Msa0578440:three_prime_UTR 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr4_1:83016765-83016784 Msa0578440:three_prime_UTR 25.0%
!!! CAGGGTTTGATTTTTTTATT+AGG - chr4_1:83016938-83016957 Msa0578440:three_prime_UTR 25.0%
!!! TGTTGTGTCTTTATTTTAGA+AGG - chr4_1:83017007-83017026 Msa0578440:exon 25.0%
! AACCTCTAATTTCTTTAATC+AGG - chr4_1:83017049-83017068 Msa0578440:CDS 25.0%
! TACCTGATTAAAGAAATTAG+AGG + chr4_1:83017054-83017073 None:intergenic 25.0%
! TATTAAATGACAGAATCATC+AGG - chr4_1:83017185-83017204 Msa0578440:intron 25.0%
!! TAGTTTAAAGTTGATTGGTT+TGG - chr4_1:83017274-83017293 Msa0578440:intron 25.0%
!!! AGTTTAAAGTTGATTGGTTT+GGG - chr4_1:83017275-83017294 Msa0578440:intron 25.0%
! TCTTATACTGCAATACTAAA+TGG - chr4_1:83017596-83017615 Msa0578440:intron 25.0%
! CTAGATATATGTAAAACACA+AGG + chr4_1:83017872-83017891 None:intergenic 25.0%
! TCAAGGAATATTGCAAAATA+TGG - chr4_1:83017922-83017941 Msa0578440:intron 25.0%
! CTAGATATAAGTAAAACACA+AGG + chr4_1:83017990-83018009 None:intergenic 25.0%
! TAGAAAACAAAGTTTACAAG+TGG - chr4_1:83018007-83018026 Msa0578440:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr4_1:83018717-83018736 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr4_1:83018729-83018748 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr4_1:83018728-83018747 Msa0578440:intron 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr4_1:83018785-83018804 Msa0578440:intron 25.0%
! TGTAAAACAAGTTTGAATTC+TGG - chr4_1:83018931-83018950 Msa0578440:intron 25.0%
! CTTCAACTTAAATGCATATT+TGG + chr4_1:83018983-83019002 None:intergenic 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr4_1:83019001-83019020 Msa0578440:intron 25.0%
! CATAATATAGTCTTCAATCT+TGG + chr4_1:83019162-83019181 None:intergenic 25.0%
!! TTGTTTCTTCTTCACTATAT+AGG - chr4_1:83019245-83019264 Msa0578440:CDS 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr4_1:83019514-83019533 Msa0578440:CDS 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr4_1:83019522-83019541 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr4_1:83019521-83019540 Msa0578440:intron 25.0%
! CTGTAATAATATTGATCCTA+TGG + chr4_1:83019588-83019607 None:intergenic 25.0%
! TAGAGAAATTACACATTTCT+TGG - chr4_1:83019925-83019944 Msa0578440:CDS 25.0%
! GTTTCAAAAAAACCTAATGT+CGG - chr4_1:83019958-83019977 Msa0578440:intron 25.0%
! TCTAAGAAATTTCTTTACCA+TGG + chr4_1:83020010-83020029 None:intergenic 25.0%
!!! ATAGCTAAGCCATTTTTTAA+AGG - chr4_1:83020285-83020304 Msa0578440:intron 25.0%
! ACTAACTTTGATCTGAATTT+GGG - chr4_1:83020499-83020518 Msa0578440:intron 25.0%
!!! TGATATCCTTTGTTTTCTTT+AGG + chr4_1:83020547-83020566 None:intergenic 25.0%
! ATGCAAATTTACTTCAATAC+TGG + chr4_1:83020754-83020773 None:intergenic 25.0%
! GTTATCTTTAAACTTATTCC+AGG - chr4_1:83020871-83020890 Msa0578440:intron 25.0%
! AATCAACTATCTTCTGTTAT+AGG + chr4_1:83020987-83021006 None:intergenic 25.0%
! AACAGAAGATAGTTGATTAT+TGG - chr4_1:83020989-83021008 Msa0578440:intron 25.0%
! GACAAAATACAATTACTATG+AGG - chr4_1:83021597-83021616 Msa0578440:intron 25.0%
! TATATGAGAAACTATGAACT+TGG - chr4_1:83021785-83021804 Msa0578440:CDS 25.0%
AAAGAAGAAGGAAAACAGAA+CGG - chr4_1:83016087-83016106 Msa0578440:three_prime_UTR 30.0%
AAGCTTCAATTACTCAACAA+TGG + chr4_1:83016295-83016314 None:intergenic 30.0%
CATCAAACAAAAGTCATAAC+TGG + chr4_1:83016732-83016751 None:intergenic 30.0%
! TCACGATTTGGATTTAAGTT+TGG - chr4_1:83017220-83017239 Msa0578440:intron 30.0%
! CACGATTTGGATTTAAGTTT+GGG - chr4_1:83017221-83017240 Msa0578440:intron 30.0%
! TTTGGGAAATTCAAGTTCTA+GGG - chr4_1:83017238-83017257 Msa0578440:intron 30.0%
!! GTTTAAAGTTGATTGGTTTG+GGG - chr4_1:83017276-83017295 Msa0578440:intron 30.0%
CAAGTCTACATTCTGTTTAT+AGG - chr4_1:83017465-83017484 Msa0578440:CDS 30.0%
ATGCTCCATGTATTAAACTT+TGG - chr4_1:83017505-83017524 Msa0578440:CDS 30.0%
AGACACCAAAGTTTAATACA+TGG + chr4_1:83017513-83017532 None:intergenic 30.0%
AACCATGTATAGATGTCATA+AGG - chr4_1:83017643-83017662 Msa0578440:CDS 30.0%
AACCTTATGACATCTATACA+TGG + chr4_1:83017648-83017667 None:intergenic 30.0%
AACCATGTATAGATGTCATA+AGG - chr4_1:83017643-83017662 Msa0578440:CDS 30.0%
TTCCTTATGACATCTATACA+TGG + chr4_1:83017688-83017707 None:intergenic 30.0%
TGTATAGATGTCATAAGGAA+AGG - chr4_1:83017688-83017707 Msa0578440:intron 30.0%
GTATAGATGTCATAAGGAAA+GGG - chr4_1:83017689-83017708 Msa0578440:intron 30.0%
TTATGATACTTGGATTCCAT+AGG + chr4_1:83018106-83018125 None:intergenic 30.0%
ATAAAAATGAACAGAAGCAG+AGG + chr4_1:83018132-83018151 None:intergenic 30.0%
AAAATTCAACATCGAAACCA+AGG + chr4_1:83018293-83018312 None:intergenic 30.0%
! TGTTGTTTGTAATGTGAAGA+TGG - chr4_1:83018341-83018360 Msa0578440:CDS 30.0%
CTATTGATACTCAACATGTT+GGG - chr4_1:83018527-83018546 Msa0578440:intron 30.0%
TATTGATACTCAACATGTTG+GGG - chr4_1:83018528-83018547 Msa0578440:intron 30.0%
! ATATTGGACAGGTTTTTCTT+TGG - chr4_1:83018554-83018573 Msa0578440:intron 30.0%
! TATTGGACAGGTTTTTCTTT+GGG - chr4_1:83018555-83018574 Msa0578440:intron 30.0%
!! TTTTTCTTTGGGAGAGATTA+TGG - chr4_1:83018566-83018585 Msa0578440:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr4_1:83018681-83018700 Msa0578440:CDS 30.0%
!!! TTATTTTCCTGTAGCTTTGT+GGG - chr4_1:83018682-83018701 Msa0578440:CDS 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr4_1:83018734-83018753 Msa0578440:intron 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr4_1:83018735-83018754 Msa0578440:intron 30.0%
ATTTCACATTACCTGAGATA+TGG + chr4_1:83018763-83018782 None:intergenic 30.0%
AAGACTGAGAGTTTATTTAG+TGG - chr4_1:83019026-83019045 Msa0578440:intron 30.0%
AGACTGAGAGTTTATTTAGT+GGG - chr4_1:83019027-83019046 Msa0578440:intron 30.0%
GATTCTTAATTAGCTAGCAA+TGG - chr4_1:83019049-83019068 Msa0578440:CDS 30.0%
! AAGCAATTTTTCATGGCTAA+AGG - chr4_1:83019108-83019127 Msa0578440:intron 30.0%
! TGTAGAATTATGCTGTGTTT+TGG - chr4_1:83019205-83019224 Msa0578440:intron 30.0%
AGTGAAGAAGAAACAATCAA+TGG + chr4_1:83019241-83019260 None:intergenic 30.0%
ACTATATAGGCAACAACATT+TGG - chr4_1:83019258-83019277 Msa0578440:CDS 30.0%
TAGAGTATGAAATAACTGCA+CGG + chr4_1:83019461-83019480 None:intergenic 30.0%
ATTTGGTTAACTATAACGTC+AGG - chr4_1:83019538-83019557 Msa0578440:intron 30.0%
TTTGGTTAACTATAACGTCA+GGG - chr4_1:83019539-83019558 Msa0578440:intron 30.0%
AGGATCAATATTATTACAGC+AGG - chr4_1:83019589-83019608 Msa0578440:intron 30.0%
GTTGTACTTGACAAATTAGA+AGG + chr4_1:83019801-83019820 None:intergenic 30.0%
TATGTCCATCATCTAATGTA+TGG - chr4_1:83020064-83020083 Msa0578440:intron 30.0%
ATGTCCATCATCTAATGTAT+GGG - chr4_1:83020065-83020084 Msa0578440:intron 30.0%
ACACAATGAAACAAATCAGA+AGG + chr4_1:83020109-83020128 None:intergenic 30.0%
TTTGTTTCATTGTGTTCTTC+AGG - chr4_1:83020114-83020133 Msa0578440:intron 30.0%
TAAATTTGCAACTGTATCAG+AGG + chr4_1:83020175-83020194 None:intergenic 30.0%
AAAATGGCTTAGCTATGAAA+AGG + chr4_1:83020281-83020300 None:intergenic 30.0%
! CACAGTTTGCCTTTAAAAAA+TGG + chr4_1:83020297-83020316 None:intergenic 30.0%
ATCTTAACACATTACAGACA+AGG + chr4_1:83020398-83020417 None:intergenic 30.0%
GACTAACTTTGATCTGAATT+TGG - chr4_1:83020498-83020517 Msa0578440:intron 30.0%
!! TTTTCTTTAGGTTCATGTAC+TGG + chr4_1:83020535-83020554 None:intergenic 30.0%
CATGAACCTAAAGAAAACAA+AGG - chr4_1:83020538-83020557 Msa0578440:intron 30.0%
! TTCAAACCTGAGTTTGTTTA+TGG - chr4_1:83020957-83020976 Msa0578440:intron 30.0%
TACATAGCAGAAATTCTTTG+AGG - chr4_1:83021036-83021055 Msa0578440:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr4_1:83021187-83021206 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr4_1:83021192-83021211 Msa0578440:intron 30.0%
!! GAAATATTTGATGGTGCTAA+AGG - chr4_1:83021534-83021553 Msa0578440:intron 30.0%
TAATAATAGGGTTTCCAGAT+AGG - chr4_1:83021652-83021671 Msa0578440:intron 30.0%
ATCATGTATCTCCTTATGAT+AGG + chr4_1:83021682-83021701 None:intergenic 30.0%
ACAAATAGTCTGCAATGAAA+AGG - chr4_1:83021731-83021750 Msa0578440:CDS 30.0%
CAAGACTTTCAATATATGCA+TGG - chr4_1:83021874-83021893 Msa0578440:CDS 30.0%
AAGAAGAAGGAAAACAGAAC+GGG - chr4_1:83016088-83016107 Msa0578440:three_prime_UTR 35.0%
!! ATGGAGGTTTTGTGAGTTAT+GGG + chr4_1:83016276-83016295 None:intergenic 35.0%
!! AATGGAGGTTTTGTGAGTTA+TGG + chr4_1:83016277-83016296 None:intergenic 35.0%
CTTCAATTACTCAACAATGG+AGG + chr4_1:83016292-83016311 None:intergenic 35.0%
ACAGAAGTTACAGAGAATCA+AGG - chr4_1:83016346-83016365 Msa0578440:three_prime_UTR 35.0%
! CCATCGATTAAGAAAAATCC+AGG + chr4_1:83016518-83016537 None:intergenic 35.0%
! CCTGGATTTTTCTTAATCGA+TGG - chr4_1:83016515-83016534 Msa0578440:three_prime_UTR 35.0%
AAAGAAGATTGATGCAGATG+AGG - chr4_1:83016575-83016594 Msa0578440:three_prime_UTR 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG - chr4_1:83016613-83016632 Msa0578440:intron 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG - chr4_1:83016771-83016790 Msa0578440:three_prime_UTR 35.0%
!!! TTTTGGTTTCGATGGTGATT+AGG - chr4_1:83016880-83016899 Msa0578440:three_prime_UTR 35.0%
! TTTGGTTTCGATGGTGATTA+GGG - chr4_1:83016881-83016900 Msa0578440:three_prime_UTR 35.0%
!! GAGAAAGGTGTTTGATTTGT+TGG - chr4_1:83016979-83016998 Msa0578440:three_prime_UTR 35.0%
TTCTGGTAAGCACTTCTAAT+TGG - chr4_1:83017100-83017119 Msa0578440:intron 35.0%
! GTTTGGGAAATTCAAGTTCT+AGG - chr4_1:83017237-83017256 Msa0578440:intron 35.0%
!! TGAGTTGTGTCACTTTGTTT+AGG - chr4_1:83017539-83017558 Msa0578440:CDS 35.0%
!! GAGTTGTGTCACTTTGTTTA+GGG - chr4_1:83017540-83017559 Msa0578440:CDS 35.0%
TATATTGGGAGAGAAAGCTA+AGG - chr4_1:83017745-83017764 Msa0578440:intron 35.0%
GAATCCTCTGAATTATACTC+AGG - chr4_1:83017826-83017845 Msa0578440:intron 35.0%
CTAACCTGAGTATAATTCAG+AGG + chr4_1:83017833-83017852 None:intergenic 35.0%
AATATGGACATTGCTCTTGA+TGG - chr4_1:83017938-83017957 Msa0578440:intron 35.0%
! TCATTTTCATGCAGTAGCTT+TGG - chr4_1:83018181-83018200 Msa0578440:intron 35.0%
GATTCTACTGTTTATGACCT+TGG - chr4_1:83018273-83018292 Msa0578440:intron 35.0%
TTGTAATGTGAAGATGGAAC+AGG - chr4_1:83018347-83018366 Msa0578440:CDS 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr4_1:83018414-83018433 Msa0578440:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr4_1:83018430-83018449 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr4_1:83018431-83018450 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr4_1:83018433-83018452 Msa0578440:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr4_1:83018444-83018463 Msa0578440:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr4_1:83018526-83018545 Msa0578440:intron 35.0%
CATTGTCATATACTGCAGAA+GGG + chr4_1:83018913-83018932 None:intergenic 35.0%
ACATTGTCATATACTGCAGA+AGG + chr4_1:83018914-83018933 None:intergenic 35.0%
TCAACATACTTATATGCAGC+TGG - chr4_1:83018957-83018976 Msa0578440:intron 35.0%
AGGAAACAACTTCAAGTGAT+AGG - chr4_1:83019128-83019147 Msa0578440:intron 35.0%
ACTTCAAGTGATAGGACAAT+AGG - chr4_1:83019136-83019155 Msa0578440:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr4_1:83019663-83019682 None:intergenic 35.0%
CAAACCAAATTGTTATCGGT+AGG + chr4_1:83019984-83020003 None:intergenic 35.0%
GCAGCAAACCAAATTGTTAT+CGG + chr4_1:83019988-83020007 None:intergenic 35.0%
AGATCCCATACATTAGATGA+TGG + chr4_1:83020072-83020091 None:intergenic 35.0%
GGGAAAGACAACTCAAAAAA+TGG + chr4_1:83020205-83020224 None:intergenic 35.0%
ATATTCCACTCCTTGATCAA+CGG + chr4_1:83020226-83020245 None:intergenic 35.0%
!! GCTCTAAAGTTCTTGTCATT+TGG - chr4_1:83020316-83020335 Msa0578440:intron 35.0%
! AAAGTTCTTGTCATTTGGTG+AGG - chr4_1:83020321-83020340 Msa0578440:intron 35.0%
! AAGTTCTTGTCATTTGGTGA+GGG - chr4_1:83020322-83020341 Msa0578440:intron 35.0%
CCAGAAAGAGAGAAACATAT+TGG + chr4_1:83020426-83020445 None:intergenic 35.0%
CCAATATGTTTCTCTCTTTC+TGG - chr4_1:83020423-83020442 Msa0578440:intron 35.0%
! TTTCTCTCTTTCTGGAAATC+AGG - chr4_1:83020431-83020450 Msa0578440:intron 35.0%
! TTCTCTCTTTCTGGAAATCA+GGG - chr4_1:83020432-83020451 Msa0578440:intron 35.0%
!! AAAGCAGCTCTAAAATGCAA+GGG - chr4_1:83020463-83020482 Msa0578440:intron 35.0%
TATACCTTTAAACTCCTTCG+AGG + chr4_1:83020604-83020623 None:intergenic 35.0%
! CTGGAAGAAATTGCTTTGAA+AGG + chr4_1:83020735-83020754 None:intergenic 35.0%
GCATGGAAATCTTATGACAT+AGG + chr4_1:83020818-83020837 None:intergenic 35.0%
TTATTCCAGGTTTCATCCAT+GGG - chr4_1:83020884-83020903 Msa0578440:CDS 35.0%
GCAGATGATGATTACATATC+AGG - chr4_1:83021355-83021374 Msa0578440:CDS 35.0%
GAGATATTTGCAAGGCTATA+TGG + chr4_1:83021497-83021516 None:intergenic 35.0%
CTGTCATTGAGATATTTGCA+AGG + chr4_1:83021505-83021524 None:intergenic 35.0%
! TGTATTTTGTCCCATGCATA+GGG + chr4_1:83021588-83021607 None:intergenic 35.0%
! TTGTATTTTGTCCCATGCAT+AGG + chr4_1:83021589-83021608 None:intergenic 35.0%
TTATGATAGGCAATCCTATC+TGG + chr4_1:83021669-83021688 None:intergenic 35.0%
AGATAGGATTGCCTATCATA+AGG - chr4_1:83021668-83021687 Msa0578440:intron 35.0%
TGATATTAGAAAAGGATCCC+TGG - chr4_1:83021705-83021724 Msa0578440:CDS 35.0%
GAGAGGAGAAGAAGAGAAAA+CGG - chr4_1:83016165-83016184 Msa0578440:three_prime_UTR 40.0%
AGAGGAGAAGAAGAGAAAAC+GGG - chr4_1:83016166-83016185 Msa0578440:three_prime_UTR 40.0%
AGAAGAAGAGAAAACGGGTA+CGG - chr4_1:83016171-83016190 Msa0578440:three_prime_UTR 40.0%
! ATGCAAGTTGAGGAAGAAGA+AGG + chr4_1:83016242-83016261 None:intergenic 40.0%
TTTGTGAGTTATGGGTGAGA+GGG + chr4_1:83016268-83016287 None:intergenic 40.0%
! TTTTGTGAGTTATGGGTGAG+AGG + chr4_1:83016269-83016288 None:intergenic 40.0%
TACAGAGAATCAAGGTGAGT+TGG - chr4_1:83016354-83016373 Msa0578440:three_prime_UTR 40.0%
ACAGAGAATCAAGGTGAGTT+GGG - chr4_1:83016355-83016374 Msa0578440:three_prime_UTR 40.0%
GAGGAAAGAATTGATGCAGA+TGG - chr4_1:83016594-83016613 Msa0578440:three_prime_UTR 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr4_1:83016605-83016624 Msa0578440:intron 40.0%
GATGGAAAGAAGAAGGAAGA+AGG - chr4_1:83016612-83016631 Msa0578440:intron 40.0%
GAGACATTACCTCAAACACT+TGG + chr4_1:83016803-83016822 None:intergenic 40.0%
TAATGCTGCAGATCACGATT+TGG - chr4_1:83017208-83017227 Msa0578440:intron 40.0%
!!! GATTGGTTTGGGGTTTGTTT+TGG - chr4_1:83017286-83017305 Msa0578440:intron 40.0%
TAAACTCACGACAGGTAATG+AGG - chr4_1:83018068-83018087 Msa0578440:intron 40.0%
GCAGAGGAGTTTATGATACT+TGG + chr4_1:83018116-83018135 None:intergenic 40.0%
TTTGATTCCCATAAAGCGTG+TGG - chr4_1:83018245-83018264 Msa0578440:intron 40.0%
AATAAATGGAGCAGCAAAGG+AGG - chr4_1:83018447-83018466 Msa0578440:intron 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr4_1:83018538-83018557 Msa0578440:intron 40.0%
! ATTGATCCTATGGAAAGCGT+TGG + chr4_1:83019578-83019597 None:intergenic 40.0%
ATTCCACAATTTCGACGTTG+CGG + chr4_1:83019640-83019659 None:intergenic 40.0%
ACACCTGATAAGATCACATC+CGG + chr4_1:83019744-83019763 None:intergenic 40.0%
!! AACAATTTGGTTTGCTGCCA+TGG - chr4_1:83019990-83020009 Msa0578440:intron 40.0%
TATTCCACTCCTTGATCAAC+GGG + chr4_1:83020225-83020244 None:intergenic 40.0%
ACTACAACACATGCACAATG+GGG + chr4_1:83020352-83020371 None:intergenic 40.0%
GACTACAACACATGCACAAT+GGG + chr4_1:83020353-83020372 None:intergenic 40.0%
AGACTACAACACATGCACAA+TGG + chr4_1:83020354-83020373 None:intergenic 40.0%
!! CAAAGCAGCTCTAAAATGCA+AGG - chr4_1:83020462-83020481 Msa0578440:intron 40.0%
! TCTAAAATGCAAGGGAAGAG+AGG - chr4_1:83020471-83020490 Msa0578440:intron 40.0%
CTTTGATCTGAATTTGGGCA+TGG - chr4_1:83020504-83020523 Msa0578440:intron 40.0%
CTTATTCCAGGTTTCATCCA+TGG - chr4_1:83020883-83020902 Msa0578440:CDS 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr4_1:83021097-83021116 Msa0578440:intron 40.0%
GGTGAGGTCTAAATCTTTCA+AGG + chr4_1:83021148-83021167 None:intergenic 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr4_1:83021203-83021222 Msa0578440:intron 40.0%
TGTTCTATTGCAACCTGCTT+AGG - chr4_1:83021313-83021332 Msa0578440:CDS 40.0%
ATTAGAGAGCTAACCTAAGC+AGG + chr4_1:83021329-83021348 None:intergenic 40.0%
TGCAGACTATTTGTAAGCCA+GGG + chr4_1:83021725-83021744 None:intergenic 40.0%
TTGCAGACTATTTGTAAGCC+AGG + chr4_1:83021726-83021745 None:intergenic 40.0%
AAGAAGAGGGGTGAGAAGAA+CGG - chr4_1:83016117-83016136 Msa0578440:three_prime_UTR 45.0%
ACGGGAAAAGAAGTGAAGTG+AGG - chr4_1:83016136-83016155 Msa0578440:three_prime_UTR 45.0%
AAAGAAGTGAAGTGAGGTCG+AGG - chr4_1:83016142-83016161 Msa0578440:three_prime_UTR 45.0%
AAGAAGTGAAGTGAGGTCGA+GGG - chr4_1:83016143-83016162 Msa0578440:three_prime_UTR 45.0%
GAAGAAGAGAAAACGGGTAC+GGG - chr4_1:83016172-83016191 Msa0578440:three_prime_UTR 45.0%
! CAAGTTGAGGAAGAAGAAGG+AGG + chr4_1:83016239-83016258 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG - chr4_1:83016633-83016652 Msa0578440:intron 45.0%
GTTTCGATGGTGATTAGGGT+TGG - chr4_1:83016885-83016904 Msa0578440:three_prime_UTR 45.0%
GTCATCGATAAACTCACGAC+AGG - chr4_1:83018060-83018079 Msa0578440:intron 45.0%
TCCTGATCCACACGCTTTAT+GGG + chr4_1:83018255-83018274 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG + chr4_1:83018256-83018275 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr4_1:83018420-83018439 Msa0578440:intron 45.0%
TTAGCTGTGACAAAAGCCAG+AGG - chr4_1:83018487-83018506 Msa0578440:intron 45.0%
TGTGACAAAAGCCAGAGGAA+TGG - chr4_1:83018492-83018511 Msa0578440:intron 45.0%
TCCAGAAACTTCCATTCCTC+TGG + chr4_1:83018506-83018525 None:intergenic 45.0%
TGTTGGGGAAGATATTGGAC+AGG - chr4_1:83018543-83018562 Msa0578440:intron 45.0%
!! TTTCCTGTAGCTTTGTGGGA+TGG - chr4_1:83018686-83018705 Msa0578440:CDS 45.0%
TGGAGCCCAAAACCATAGTA+AGG + chr4_1:83018743-83018762 None:intergenic 45.0%
GAATTGCGATTTGCAGTCCA+AGG - chr4_1:83018859-83018878 Msa0578440:intron 45.0%
!! AAAGTGTTGTGTACATGCCG+CGG - chr4_1:83019286-83019305 Msa0578440:intron 45.0%
ACCGTATCCAATTTGATCCG+CGG + chr4_1:83019306-83019325 None:intergenic 45.0%
ATTGTCTGCATTCTGCGAGA+AGG - chr4_1:83019332-83019351 Msa0578440:intron 45.0%
! ACTATAACGTCAGGGTGTCT+TGG - chr4_1:83019547-83019566 Msa0578440:intron 45.0%
CAATTTCGACGTTGCGGTAA+TGG + chr4_1:83019634-83019653 None:intergenic 45.0%
TTACCGCAACGTCGAAATTG+TGG - chr4_1:83019634-83019653 Msa0578440:intron 45.0%
CGTCGAAATTGTGGAATCCA+AGG - chr4_1:83019643-83019662 Msa0578440:intron 45.0%
TGTCCGGATGTGATCTTATC+AGG - chr4_1:83019738-83019757 Msa0578440:intron 45.0%
TCGGCCTACCGATAACAATT+TGG - chr4_1:83019977-83019996 Msa0578440:intron 45.0%
GTTGTCTTTCCCGTTGATCA+AGG - chr4_1:83020213-83020232 Msa0578440:CDS 45.0%
TTAAACTCCTTCGAGGATGC+AGG + chr4_1:83020597-83020616 None:intergenic 45.0%
GCATCCTCGAAGGAGTTTAA+AGG - chr4_1:83020597-83020616 Msa0578440:intron 45.0%
TTCCTTGAGTCTCTCTTGTG+AGG + chr4_1:83020936-83020955 None:intergenic 45.0%
GGCAAGCCATAAACAAACTC+AGG + chr4_1:83020966-83020985 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCATA+AGG - chr4_1:83021114-83021133 Msa0578440:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG + chr4_1:83021129-83021148 None:intergenic 45.0%
TCTGGTGTATGCAGCAAGAA+GGG + chr4_1:83021169-83021188 None:intergenic 45.0%
ATAGCCTCTTCACTTAGGCT+TGG + chr4_1:83021248-83021267 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG + chr4_1:83021253-83021272 None:intergenic 45.0%
CACTGATACAAGAGCCTTGA+TGG - chr4_1:83021389-83021408 Msa0578440:intron 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr4_1:83021406-83021425 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr4_1:83021409-83021428 Msa0578440:intron 45.0%
AATATGCTCCCCCAACTGAT+TGG - chr4_1:83021562-83021581 Msa0578440:intron 45.0%
ATGCATAGGGCCAATCAGTT+GGG + chr4_1:83021575-83021594 None:intergenic 45.0%
! AACTGATTGGCCCTATGCAT+GGG - chr4_1:83021575-83021594 Msa0578440:intron 45.0%
!!! TTTTACTAATATATTAAATT+TGG + chr4_1:83020649-83020668 None:intergenic 5.0%
AGAACGGGACAGAGAAGAAG+AGG - chr4_1:83016103-83016122 Msa0578440:three_prime_UTR 50.0%
GAACGGGACAGAGAAGAAGA+GGG - chr4_1:83016104-83016123 Msa0578440:three_prime_UTR 50.0%
AACGGGACAGAGAAGAAGAG+GGG - chr4_1:83016105-83016124 Msa0578440:three_prime_UTR 50.0%
AGAAGAGGGGTGAGAAGAAC+GGG - chr4_1:83016118-83016137 Msa0578440:three_prime_UTR 50.0%
AAACGGGTACGGGAGAAAGA+AGG - chr4_1:83016182-83016201 Msa0578440:three_prime_UTR 50.0%
AACGGGTACGGGAGAAAGAA+GGG - chr4_1:83016183-83016202 Msa0578440:three_prime_UTR 50.0%
! GAGAGGGAGTATGCAAGTTG+AGG + chr4_1:83016252-83016271 None:intergenic 50.0%
TGGCACTCACCAAGTGTTTG+AGG - chr4_1:83016791-83016810 Msa0578440:three_prime_UTR 50.0%
TCCCATAAAGCGTGTGGATC+AGG - chr4_1:83018251-83018270 Msa0578440:intron 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr4_1:83018451-83018470 Msa0578440:intron 50.0%
GCCAGAGGAATGGAAGTTTC+TGG - chr4_1:83018502-83018521 Msa0578440:intron 50.0%
CTTCCATCCCACAAAGCTAC+AGG + chr4_1:83018692-83018711 None:intergenic 50.0%
!!! GGTTTTGGGCTCCATATCTC+AGG - chr4_1:83018749-83018768 Msa0578440:intron 50.0%
GAAATCGACTACAACCGCTG+TGG + chr4_1:83018885-83018904 None:intergenic 50.0%
GTACATGCCGCGGATCAAAT+TGG - chr4_1:83019296-83019315 Msa0578440:intron 50.0%
GCCGCGGATCAAATTGGATA+CGG - chr4_1:83019302-83019321 Msa0578440:intron 50.0%
GTTGCTCCAACGCTTTCCAT+AGG - chr4_1:83019569-83019588 Msa0578440:intron 50.0%
GTTATCGGTAGGCCGACATT+AGG + chr4_1:83019973-83019992 None:intergenic 50.0%
CTTTCCCGTTGATCAAGGAG+TGG - chr4_1:83020218-83020237 Msa0578440:CDS 50.0%
CAACACATGCACAATGGGGT+TGG + chr4_1:83020348-83020367 None:intergenic 50.0%
CTTACAACCTGCATCCTCGA+AGG - chr4_1:83020587-83020606 Msa0578440:intron 50.0%
AAGAGCCCATGGATGAAACC+TGG + chr4_1:83020892-83020911 None:intergenic 50.0%
TTCATCCATGGGCTCTTCAC+AGG - chr4_1:83020895-83020914 Msa0578440:CDS 50.0%
AGCCTCACAAGAGAGACTCA+AGG - chr4_1:83020931-83020950 Msa0578440:CDS 50.0%
! CAAGGATGTGCAGCCTTATG+AGG + chr4_1:83021130-83021149 None:intergenic 50.0%
TGTATGCAGCAAGAAGGGTG+AGG + chr4_1:83021164-83021183 None:intergenic 50.0%
CTCTGGTGTATGCAGCAAGA+AGG + chr4_1:83021170-83021189 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG - chr4_1:83021241-83021260 Msa0578440:intron 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr4_1:83021402-83021421 Msa0578440:intron 50.0%
TGCATAGGGCCAATCAGTTG+GGG + chr4_1:83021574-83021593 None:intergenic 50.0%
CATGCATAGGGCCAATCAGT+TGG + chr4_1:83021576-83021595 None:intergenic 50.0%
! CAACTGATTGGCCCTATGCA+TGG - chr4_1:83021574-83021593 Msa0578440:intron 50.0%
ACGGGTACGGGAGAAAGAAG+GGG - chr4_1:83016184-83016203 Msa0578440:three_prime_UTR 55.0%
GAGGACTTCTGAGTCGCCTA+TGG - chr4_1:83018087-83018106 Msa0578440:intron 55.0%
TTTGCAGTCCAAGGCCACAG+CGG - chr4_1:83018868-83018887 Msa0578440:intron 55.0%
ATTCTGCGAGAAGGCCAGCA+TGG - chr4_1:83019341-83019360 Msa0578440:intron 55.0%
AAGGCCAGCATGGTGAGCAA+GGG - chr4_1:83019351-83019370 Msa0578440:intron 55.0%
CACTTCCTGTGAAGAGCCCA+TGG + chr4_1:83020903-83020922 None:intergenic 55.0%
CATGGGCTCTTCACAGGAAG+TGG - chr4_1:83020901-83020920 Msa0578440:CDS 55.0%
GCATAGGGCCAATCAGTTGG+GGG + chr4_1:83021573-83021592 None:intergenic 55.0%
GTGAAGTGAGGTCGAGGGAG+AGG - chr4_1:83016148-83016167 Msa0578440:three_prime_UTR 60.0%
CGGGTACGGGAGAAAGAAGG+GGG - chr4_1:83016185-83016204 Msa0578440:three_prime_UTR 60.0%
GGGTACGGGAGAAAGAAGGG+GGG - chr4_1:83016186-83016205 Msa0578440:three_prime_UTR 60.0%
GACTACAACCGCTGTGGCCT+TGG + chr4_1:83018879-83018898 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG - chr4_1:83019350-83019369 Msa0578440:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG - chr4_1:83019352-83019371 Msa0578440:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + chr4_1:83019358-83019377 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83016063 83021916 83016063 ID=Msa0578440;Name=Msa0578440
chr4_1 mRNA 83016063 83021916 83016063 ID=Msa0578440-mRNA-1;Parent=Msa0578440;Name=Msa0578440-mRNA-1;_AED=0.22;_eAED=0.30;_QI=0|0.53|0.5|0.93|0.93|0.87|16|876|535
chr4_1 exon 83016063 83016620 83016063 ID=Msa0578440-mRNA-1:exon:30249;Parent=Msa0578440-mRNA-1
chr4_1 exon 83016694 83017086 83016694 ID=Msa0578440-mRNA-1:exon:30248;Parent=Msa0578440-mRNA-1
chr4_1 exon 83017361 83017563 83017361 ID=Msa0578440-mRNA-1:exon:30247;Parent=Msa0578440-mRNA-1
chr4_1 exon 83017642 83017690 83017642 ID=Msa0578440-mRNA-1:exon:30246;Parent=Msa0578440-mRNA-1
chr4_1 exon 83018303 83018419 83018303 ID=Msa0578440-mRNA-1:exon:30245;Parent=Msa0578440-mRNA-1
chr4_1 exon 83018617 83018712 83018617 ID=Msa0578440-mRNA-1:exon:30244;Parent=Msa0578440-mRNA-1
chr4_1 exon 83019048 83019104 83019048 ID=Msa0578440-mRNA-1:exon:30243;Parent=Msa0578440-mRNA-1
chr4_1 exon 83019209 83019283 83019209 ID=Msa0578440-mRNA-1:exon:30242;Parent=Msa0578440-mRNA-1
chr4_1 exon 83019415 83019537 83019415 ID=Msa0578440-mRNA-1:exon:30241;Parent=Msa0578440-mRNA-1
chr4_1 exon 83019677 83019748 83019677 ID=Msa0578440-mRNA-1:exon:30240;Parent=Msa0578440-mRNA-1
chr4_1 exon 83019898 83019969 83019898 ID=Msa0578440-mRNA-1:exon:30239;Parent=Msa0578440-mRNA-1
chr4_1 exon 83020132 83020269 83020132 ID=Msa0578440-mRNA-1:exon:30238;Parent=Msa0578440-mRNA-1
chr4_1 exon 83020672 83020781 83020672 ID=Msa0578440-mRNA-1:exon:30237;Parent=Msa0578440-mRNA-1
chr4_1 exon 83020875 83020953 83020875 ID=Msa0578440-mRNA-1:exon:30236;Parent=Msa0578440-mRNA-1
chr4_1 exon 83021302 83021404 83021302 ID=Msa0578440-mRNA-1:exon:30235;Parent=Msa0578440-mRNA-1
chr4_1 exon 83021678 83021916 83021678 ID=Msa0578440-mRNA-1:exon:30234;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83021678 83021916 83021678 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83021302 83021404 83021302 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83020875 83020953 83020875 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83020672 83020781 83020672 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83020132 83020269 83020132 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83019898 83019969 83019898 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83019677 83019748 83019677 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83019415 83019537 83019415 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83019209 83019283 83019209 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83019048 83019104 83019048 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83018617 83018712 83018617 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83018303 83018419 83018303 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83017642 83017690 83017642 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83017361 83017563 83017361 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 CDS 83017012 83017086 83017012 ID=Msa0578440-mRNA-1:cds;Parent=Msa0578440-mRNA-1
chr4_1 three_prime_UTR 83016694 83017011 83016694 ID=Msa0578440-mRNA-1:three_prime_utr;Parent=Msa0578440-mRNA-1
chr4_1 three_prime_UTR 83016063 83016620 83016063 ID=Msa0578440-mRNA-1:three_prime_utr;Parent=Msa0578440-mRNA-1
Gene Sequence

>Msa0578440

ATGAAGAAAAGAAAAAAAAAAAAAAAAGAAGAAGGAAAACAGAACGGGACAGAGAAGAAGAGGGGTGAGAAGAACGGGAAAAGAAGTGAAGTGAGGTCGAGGGAGAGGAGAAGAAGAGAAAACGGGTACGGGAGAAAGAAGGGGGGACGAGAGAAAGAAGAAGAAAAACAGATCCTCCTTCTTCTTCCTCAACTTGCATACTCCCTCTCACCCATAACTCACAAAACCTCCATTGTTGAAAAGAAGATTGATGCAGATGAGGAAAGAATTGATGCAGATGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAAGCTGGTAATTGTTCTATTCTCAATCATAAGGTGTTTTCACTTTTGATGATAACCTCTAATTTCTTTAATCAGGTAAACAACATATATGATAATGAACTTAATTCTGAATCATCAGGTAATGCTGCAGATCACGATTTGGATTTAAGTTTGGGAAATTCAAGTTCTAGGGTTGATGCTTTTTATAGTTTAAAGTTGATTGGTTTGGGGTTTGTTTTGGGTGACTTCATATCTGATAAAGAGATAAAGTATGTTATATTGGGAGAGAAAGCTAAGGCTCAGTTGATTTGTGACTCAAAGAAAGACATTGCACTCAGTTTAACTGAAATACAAAAGAATCCTCTGAATTATACTCAGAAAACAAAGTTTACAAGTGGTACTGAATTAGTTTGTTTTAACGCTACAAAGTCATCGATAAACTCACGACAGATTTTTTCAAATATTTTGATTCCCATAAAGCGTGTGGATCAGGATTCTACTGTTTATGACCTTGGTTTCGATGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAAGCCAGAGGAATGGAAGTTTCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGGATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGCTCCATATCTCAGTCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCTGCAGTATATGACAATGCAACAACATTTGGCATGAAAAGTGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTATTACAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAACGTCGAAATTGTGGAATCCAAGGCTAATGCAAATCTAAGCCATTTTTTAAAGGCAAACTGTGCTCTAAAGTTCTTGTCATTTGATTCTAGCCAATATGTTTCTCTCTTTCTGGAAATCAGGGCTTATGACAAAGCAGCTCTAAAATGCAAGGGAAGAGAGGCAGTGACTAACTTTGATCTGAATTTGGGCATGGCGACTCCAGTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCAGACTGTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGA
Protein sequence

>Msa0578440

MKKRKKKKKEEGKQNGTEKKRGEKNGKRSEVRSRERRRRENGYGRKKGGREKEEEKQILLLLPQLAYSLSPITHKTSIVEKKIDADEERIDADGKKKEEGNALFKAGNCSILNHKVFSLLMITSNFFNQVNNIYDNELNSESSGNAADHDLDLSLGNSSSRVDAFYSLKLIGLGFVLGDFISDKEIKYVILGEKAKAQLICDSKKDIALSLTEIQKNPLNYTQKTKFTSGTELVCFNATKSSINSRQIFSNILIPIKRVDQDSTVYDLGFDVVINGAAKEVGRAAVLAVTKARGMEVSGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNATTFGMKSVVYMPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANLSHFLKANCALKFLSFDSSQYVSLFLEIRAYDKAALKCKGREAVTNFDLNLGMATPVHEPKENKGYHQFQTVSSYNLHPRRSLKVSSMGSSQEVEIKASQERLKEFQT*