AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0768100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768100 MtrunA17_Chr1g0203761 97.484 159 4 0 196 354 41 199 7.31e-106 317
Msa0768100 MtrunA17_Chr2g0325911 57.647 85 14 1 379 441 245 329 1.48e-21 97.1
Msa0768100 MtrunA17_Chr4g0073341 94.872 39 2 0 109 147 145 183 2.22e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768100 AT5G52100.1 77.848 158 35 0 196 353 36 193 4.19e-83 258

Find 151 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATATGTTTCTCTCTTTC+TGG 0.044768 5_2:-31979235 Msa0768100:CDS
GACTAACTTTGATCTGAATT+TGG 0.097622 5_2:-31979160 Msa0768100:CDS
TTCAAACCTGAGTTTGTTTA+TGG 0.100230 5_2:-31978721 Msa0768100:exon
ATCCTGATCCACACGCTTTA+TGG 0.119105 5_2:+31981262 None:intergenic
AGTAAAGGAAAGATAATAAT+AGG 0.187247 5_2:-31978038 Msa0768100:three_prime_UTR
AAATGACCTTACTATGGTTT+TGG 0.191058 5_2:-31980781 Msa0768100:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 5_2:-31981082 Msa0768100:intron
AACAGAAGATAGTTGATTAT+TGG 0.224941 5_2:-31978689 Msa0768100:three_prime_UTR
AATCAACTATCTTCTGTTAT+AGG 0.232152 5_2:+31978694 None:intergenic
CCATTGGATCTTGCACATTT+AGG 0.235976 5_2:+31983777 None:intergenic
AACCTCTAATTTCTTTAATC+AGG 0.254932 5_2:-31982468 Msa0768100:CDS
CACGATTTGGATTTGAGTTT+GGG 0.272951 5_2:-31982296 Msa0768100:CDS
TTTCTCTCTTTCTGGAAATC+AGG 0.272997 5_2:-31979227 Msa0768100:CDS
AGAGATAAAGTATGTTATAT+TGG 0.274675 5_2:-31981785 Msa0768100:CDS
TCACGATTTGGATTTGAGTT+TGG 0.276796 5_2:-31982297 Msa0768100:CDS
GTTTGGGAAATTCAAGTTCT+AGG 0.285239 5_2:-31982280 Msa0768100:CDS
TTAGAAAAGTGGAAGGAAAA+TGG 0.290062 5_2:-31983753 Msa0768100:CDS
CAATTTCGACGTTGCGGTAA+TGG 0.296694 5_2:+31979884 None:intergenic
TTATGATAGGCAATCCTATC+TGG 0.308805 5_2:+31978011 None:intergenic
GAGCTATTTGCAAGGCTATA+TGG 0.309109 5_2:+31978183 None:intergenic
GCAGATGATGATTACATATC+AGG 0.313619 5_2:-31978323 Msa0768100:intron
GCCAGAGGAATGGAAGTTTC+TGG 0.319689 5_2:-31981013 Msa0768100:CDS
CACTGATACAAGAGCCTTGA+TGG 0.321757 5_2:-31978289 Msa0768100:three_prime_UTR
GCATCCTCGAAGGAGTTTAA+AGG 0.331002 5_2:-31979061 Msa0768100:intron
ACTAACTTTGATCTGAATTT+GGG 0.334405 5_2:-31979159 Msa0768100:CDS
TATGATAATGAACTTAATTC+TGG 0.336630 5_2:-31982434 Msa0768100:intron
TATACTAAATGACCTTACTA+TGG 0.353599 5_2:-31980787 Msa0768100:CDS
GCTCTAAAGTTCTTGTCATT+TGG 0.355199 5_2:-31979342 Msa0768100:intron
CAACATGTTGGGGAAGATAT+TGG 0.357960 5_2:-31980977 Msa0768100:CDS
CCAGAAAGAGAGAAACATAT+TGG 0.358725 5_2:+31979235 None:intergenic
CAAGGATGTGCAGCCTTATG+AGG 0.363133 5_2:+31978551 None:intergenic
GACTACAACCGCTGTGGCCT+TGG 0.364137 5_2:+31980639 None:intergenic
TAATAATAGGGTTTCCAGAT+AGG 0.365703 5_2:-31978025 Msa0768100:three_prime_UTR
TAGAAAAGTGGAAGGAAAAT+GGG 0.370672 5_2:-31983752 Msa0768100:CDS
ACTATATAGGCAACAGCATT+TGG 0.384690 5_2:-31980257 Msa0768100:intron
ATTTCACATTACCTGAGATA+TGG 0.385396 5_2:+31980755 None:intergenic
TCCCATAAAGCGTGTGGATC+AGG 0.389891 5_2:-31981264 Msa0768100:CDS
GAGATAAAGTATGTTATATT+GGG 0.394913 5_2:-31981784 Msa0768100:CDS
TCCTGATCCACACGCTTTAT+GGG 0.396006 5_2:+31981263 None:intergenic
GTACATGCCGCGGATCAAAT+TGG 0.402326 5_2:-31980219 Msa0768100:CDS
ATGCATAGGGCCAATCAGTT+GGG 0.403692 5_2:+31978105 None:intergenic
CTATTGATACTCAACATGTT+GGG 0.408524 5_2:-31980988 Msa0768100:CDS
TACCTGATTAAAGAAATTAG+AGG 0.410994 5_2:+31982466 None:intergenic
CTGTAATAATATTGATCCTA+TGG 0.411160 5_2:+31979930 None:intergenic
TAATGCTGCAGATCACGATT+TGG 0.415240 5_2:-31982309 Msa0768100:CDS
TTCTCTCTTTCTGGAAATCA+GGG 0.422990 5_2:-31979226 Msa0768100:CDS
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 5_2:+31978494 None:intergenic
GATTCTACTGTTTATGACCT+TGG 0.432051 5_2:-31981242 Msa0768100:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 5_2:+31980160 None:intergenic
AGTATATGACAATGTAAAAC+AGG 0.435138 5_2:-31980596 Msa0768100:intron
CTTATTCCAGGTTTCATCCA+TGG 0.441827 5_2:-31978795 Msa0768100:intron
GTAAAGGAAAGATAATAATA+GGG 0.442334 5_2:-31978037 Msa0768100:three_prime_UTR
CAGATTCAGTGGAATCTGTA+AGG 0.450140 5_2:-31978475 Msa0768100:three_prime_UTR
TTGCAGACTATTTGTAAGCC+AGG 0.450460 5_2:+31977954 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 5_2:+31979855 None:intergenic
GCAAATTATTATAAGAGTAA+AGG 0.452896 5_2:-31978053 Msa0768100:three_prime_UTR
ATAACAAACGAAATATTTGA+TGG 0.458452 5_2:-31978152 Msa0768100:three_prime_UTR
GGTGAGGTCTAAATCTTTCA+AGG 0.460191 5_2:+31978533 None:intergenic
TACATAGCAGAAATTCTTTG+AGG 0.464491 5_2:-31978642 Msa0768100:three_prime_UTR
TTTGGGAAATTCAAGTTCTA+GGG 0.471258 5_2:-31982279 Msa0768100:CDS
TTCATCCATGGGCTCTTCAC+AGG 0.471535 5_2:-31978783 Msa0768100:CDS
TCCAGAAACTTCCATTCCTC+TGG 0.475788 5_2:+31981012 None:intergenic
GAAATATTTGATGGTGCTAA+AGG 0.477207 5_2:-31978143 Msa0768100:three_prime_UTR
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 5_2:+31978433 None:intergenic
TTAAACTCCTTCGAGGATGC+AGG 0.479138 5_2:+31979064 None:intergenic
ACAAATAGTCTGCAATGAAA+AGG 0.479215 5_2:-31977946 Msa0768100:three_prime_UTR
CTTGCATAGCCTCTTCACTT+AGG 0.480071 5_2:+31978428 None:intergenic
TATACCTTTAAACTCCTTCG+AGG 0.483660 5_2:+31979057 None:intergenic
ATCATGTATCTCCTTATGAT+AGG 0.485561 5_2:+31977998 None:intergenic
GATGGAAAGAAGAAGGAAGA+AGG 0.490833 5_2:-31982903 Msa0768100:CDS
TTATTCCAGGTTTCATCCAT+GGG 0.490950 5_2:-31978794 Msa0768100:intron
CATGGGCTCTTCACAGGAAG+TGG 0.492997 5_2:-31978777 Msa0768100:CDS
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 5_2:-31980829 Msa0768100:intron
AGATAGGATTGCCTATCATA+AGG 0.496987 5_2:-31978009 Msa0768100:three_prime_UTR
GCTATTGATACTCAACATGT+TGG 0.498878 5_2:-31980989 Msa0768100:CDS
CACTTCCTGTGAAGAGCCCA+TGG 0.499204 5_2:+31978778 None:intergenic
TTCCTTGAGTCTCTCTTGTG+AGG 0.500081 5_2:+31978745 None:intergenic
ATGGAAAGAAGAAGGAAGAA+GGG 0.501486 5_2:-31982902 Msa0768100:CDS
ATGATACATGATATTAGAAA+AGG 0.502189 5_2:-31977980 Msa0768100:three_prime_UTR
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 5_2:-31978269 Msa0768100:three_prime_UTR
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 5_2:-31979946 Msa0768100:CDS
TGATGCAGATGGAAAGAAGA+AGG 0.510322 5_2:-31982910 Msa0768100:CDS
CTCTGGTGTATGCAGCAAGA+AGG 0.513021 5_2:+31978511 None:intergenic
AGGATCAATATTATTACAGC+AGG 0.513741 5_2:-31979926 Msa0768100:CDS
TGTAGGAGCATTCCCTCATA+AGG 0.514702 5_2:-31978564 Msa0768100:three_prime_UTR
TTTAACTTCTTCAGATTCAG+TGG 0.515006 5_2:-31978486 Msa0768100:three_prime_UTR
CTTTGATCTGAATTTGGGCA+TGG 0.516010 5_2:-31979154 Msa0768100:CDS
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 5_2:-31978276 Msa0768100:three_prime_UTR
TGGAGCCCAAAACCATAGTA+AGG 0.517913 5_2:+31980775 None:intergenic
ACTATAACGTCAGGGTGTCT+TGG 0.518817 5_2:-31979968 Msa0768100:intron
TTACCGCAACGTCGAAATTG+TGG 0.519053 5_2:-31979881 Msa0768100:CDS
GGGAATGCATTGTTCAAAGC+TGG 0.521453 5_2:-31982882 Msa0768100:intron
GATCCAATGGCTTAGAAAAG+TGG 0.522619 5_2:-31983764 Msa0768100:CDS
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 5_2:+31980789 None:intergenic
ACATTGTCATATACTGCAGA+AGG 0.525891 5_2:+31980604 None:intergenic
CATGCATAGGGCCAATCAGT+TGG 0.530056 5_2:+31978104 None:intergenic
AAAGAAGATTGATGCAGATG+AGG 0.536126 5_2:-31982940 Msa0768100:CDS
TATTAAATGACAGAATCATC+AGG 0.536179 5_2:-31982332 Msa0768100:intron
TCCAGCTTTGAACTCCATCA+AGG 0.536851 5_2:+31978275 None:intergenic
GAGGAAAGAATTGATGCAGA+TGG 0.541097 5_2:-31982921 Msa0768100:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.543811 5_2:-31981071 Msa0768100:CDS
TCTAAAATGCAAGGGAAGAG+AGG 0.545819 5_2:-31979187 Msa0768100:CDS
CGTCGAAATTGTGGAATCCA+AGG 0.546529 5_2:-31979872 Msa0768100:CDS
AGCAGTATTAGCTGTGACAA+AGG 0.549949 5_2:-31981035 Msa0768100:CDS
TATATGATAAACTATGAACT+TGG 0.550574 5_2:-31977892 Msa0768100:three_prime_UTR
TTTGATTCCCATAAAGCGTG+TGG 0.552857 5_2:-31981270 Msa0768100:CDS
TGCATAGGGCCAATCAGTTG+GGG 0.555153 5_2:+31978106 None:intergenic
TGCAGACTATTTGTAAGCCA+GGG 0.558908 5_2:+31977955 None:intergenic
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 5_2:-31978437 Msa0768100:three_prime_UTR
GGCAAGCCATAAACAAACTC+AGG 0.560166 5_2:+31978715 None:intergenic
CAAAGCAGCTCTAAAATGCA+AGG 0.560883 5_2:-31979196 Msa0768100:CDS
CCTAAATGTGCAAGATCCAA+TGG 0.566780 5_2:-31983777 Msa0768100:CDS
AAGGATGTGCAGCCTTATGA+GGG 0.571624 5_2:+31978552 None:intergenic
ATTGATCCTATGGAAAGCGT+TGG 0.571844 5_2:+31979940 None:intergenic
AGAAAAGTGGAAGGAAAATG+GGG 0.572947 5_2:-31983751 Msa0768100:CDS
TGATATTAGAAAAGGATCCC+TGG 0.578018 5_2:-31977972 Msa0768100:three_prime_UTR
TCTGGTGTATGCAGCAAGAA+GGG 0.579600 5_2:+31978512 None:intergenic
GCCGCGGATCAAATTGGATA+CGG 0.582539 5_2:-31980213 Msa0768100:CDS
GACAAAATACAATTACTATG+AGG 0.586096 5_2:-31978080 Msa0768100:three_prime_UTR
GTCATCGATAAACTCACGAC+AGG 0.586511 5_2:-31981455 Msa0768100:intron
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 5_2:-31981023 Msa0768100:CDS
TAGAAAACAAAGTTTACAAG+TGG 0.593903 5_2:-31981508 Msa0768100:CDS
CTGTCATTGAGCTATTTGCA+AGG 0.595983 5_2:+31978175 None:intergenic
CAAGACTTTCAATATATGCA+TGG 0.601988 5_2:-31977803 Msa0768100:three_prime_UTR
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 5_2:-31981064 Msa0768100:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 5_2:-31980987 Msa0768100:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 5_2:+31980801 None:intergenic
GAATCCTCTGAATTATACTC+AGG 0.606536 5_2:-31981689 Msa0768100:intron
AATAAATGGAGCAGCAAAGG+AGG 0.611168 5_2:-31981068 Msa0768100:CDS
ATTGTCTGCATTCTGCGAGA+AGG 0.616513 5_2:-31980183 Msa0768100:CDS
TAGAAGGATTCATCACGTGT+AGG 0.618364 5_2:-31978581 Msa0768100:three_prime_UTR
CAATGGCTTAGAAAAGTGGA+AGG 0.623997 5_2:-31983760 Msa0768100:CDS
AAAATTCAACATGGAAACCA+AGG 0.625061 5_2:+31981225 None:intergenic
ATTCCACAATTTCGACGTTG+CGG 0.630579 5_2:+31979878 None:intergenic
ACCGTATCCAATTTGATCCG+CGG 0.631428 5_2:+31980212 None:intergenic
CATTGTCATATACTGCAGAA+GGG 0.632959 5_2:+31980605 None:intergenic
CTAACCTGAGTATAATTCAG+AGG 0.633689 5_2:+31981685 None:intergenic
CTTACAACCTGCATCCTCGA+AGG 0.638582 5_2:-31979071 Msa0768100:CDS
AAAGCAGCTCTAAAATGCAA+GGG 0.646780 5_2:-31979195 Msa0768100:CDS
ATTCTGCGAGAAGGCCAGCA+TGG 0.649764 5_2:-31980174 Msa0768100:intron
GAAAAGTGGAAGGAAAATGG+GGG 0.657806 5_2:-31983750 Msa0768100:CDS
CATGAACCTAAAGAAAACAA+AGG 0.659528 5_2:-31979120 Msa0768100:CDS
AGCCTCACAAGAGAGACTCA+AGG 0.664869 5_2:-31978747 Msa0768100:CDS
AAAGCGTTGTGTACATGCCG+CGG 0.666394 5_2:-31980229 Msa0768100:CDS
TGTATGCAGCAAGAAGGGTG+AGG 0.675322 5_2:+31978517 None:intergenic
TATATTGGGAGAGAAAGCTA+AGG 0.687081 5_2:-31981770 Msa0768100:CDS
AAAAGTGGAAGGAAAATGGG+GGG 0.691606 5_2:-31983749 Msa0768100:CDS
GCATAGGGCCAATCAGTTGG+GGG 0.712704 5_2:+31978107 None:intergenic
TTTGCAGTCCAAGGCCACAG+CGG 0.725554 5_2:-31980647 Msa0768100:intron
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 5_2:-31981028 Msa0768100:CDS
GAAATCGACTACAACCGCTG+TGG 0.746133 5_2:+31980633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATGTAAAAAATAAAT+GGG - chr5_2:31978812-31978831 Msa0768100:intron 10.0%
!! AATGCAATTAATTATTAATT+AGG + chr5_2:31979215-31979234 None:intergenic 10.0%
!!! ATAATATGATGATATTTTAT+AGG + chr5_2:31983646-31983665 None:intergenic 10.0%
!! TAAATATGAAATAGTTGTTT+CGG - chr5_2:31977894-31977913 Msa0768100:three_prime_UTR 15.0%
!! TAAATATGAAATAGTTGTTT+CGG - chr5_2:31977894-31977913 Msa0768100:three_prime_UTR 15.0%
!! ATAAATATGAAATAGTTGTA+GGG - chr5_2:31977969-31977988 Msa0768100:three_prime_UTR 15.0%
!! TAAATATGAAATAGTTGTTT+CGG - chr5_2:31977894-31977913 Msa0768100:three_prime_UTR 15.0%
!! TAAATATGAAATATGATCAA+TGG - chr5_2:31978051-31978070 Msa0768100:three_prime_UTR 15.0%
!! TAAATATGAAATAGTTGTTT+CGG - chr5_2:31977894-31977913 Msa0768100:three_prime_UTR 15.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr5_2:31978811-31978830 Msa0768100:intron 15.0%
!!! AAATCAATAAAACAATTTTC+TGG + chr5_2:31978967-31978986 None:intergenic 15.0%
!!! AAATTGTTTTATTGATTTTC+AGG - chr5_2:31978969-31978988 Msa0768100:intron 15.0%
!!! AATTGTTTTATTGATTTTCA+GGG - chr5_2:31978970-31978989 Msa0768100:intron 15.0%
!!! AAATTTCTTAGATTTTCTAT+AGG - chr5_2:31981926-31981945 Msa0768100:intron 15.0%
!! AATAACATAGTAAATTATGA+TGG + chr5_2:31982595-31982614 None:intergenic 15.0%
!!! TATGGTATAAGTATTTTAAT+CGG + chr5_2:31983368-31983387 None:intergenic 15.0%
!! GATAAATATGAAATAGTTGT+AGG - chr5_2:31977892-31977911 Msa0768100:three_prime_UTR 20.0%
!!! TTTAATTGATGTTTTTTTCC+TGG - chr5_2:31978547-31978566 Msa0768100:three_prime_UTR 20.0%
!!! GATGGTTTTTTTTTTTTTGT+GGG - chr5_2:31978583-31978602 Msa0768100:three_prime_UTR 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr5_2:31978817-31978836 Msa0768100:intron 20.0%
!! CAATAACAATACTAATTACT+TGG - chr5_2:31978873-31978892 Msa0768100:intron 20.0%
!!! AAATTCTGGAAAAACATTTT+TGG + chr5_2:31978908-31978927 None:intergenic 20.0%
!! TCGAAACAAAAAAAAAATTC+TGG + chr5_2:31978922-31978941 None:intergenic 20.0%
!!! GAATTTTTTTTTTGTTTCGA+TGG - chr5_2:31978922-31978941 Msa0768100:intron 20.0%
!!! AGGGTTTGATTTTTTTATTA+GGG - chr5_2:31978989-31979008 Msa0768100:intron 20.0%
!!! TTGTTTTGATTTTAAGAGAA+AGG - chr5_2:31979014-31979033 Msa0768100:intron 20.0%
!!! TATGATAATGAACTTAATTC+TGG - chr5_2:31979132-31979151 Msa0768100:CDS 20.0%
!!! TTTTATAGTTTAGAGTTGAT+TGG - chr5_2:31979318-31979337 Msa0768100:intron 20.0%
!! AGAGATAAAGTATGTTATAT+TGG - chr5_2:31979781-31979800 Msa0768100:intron 20.0%
!! GAGATAAAGTATGTTATATT+GGG - chr5_2:31979782-31979801 Msa0768100:intron 20.0%
!! TCCTAAATTAAATTGTTTCA+AGG - chr5_2:31979956-31979975 Msa0768100:CDS 20.0%
!!! TCCTTGAAACAATTTAATTT+AGG + chr5_2:31979960-31979979 None:intergenic 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr5_2:31980701-31980720 Msa0768100:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr5_2:31980727-31980746 None:intergenic 20.0%
!! AAGTTGAAGTGTAAATTAAA+TGG - chr5_2:31981045-31981064 Msa0768100:CDS 20.0%
!!! GTTTTTAAAGCAATTTTTCA+TGG - chr5_2:31981152-31981171 Msa0768100:intron 20.0%
!!! ACAAACATTCATATTTTAAG+TGG + chr5_2:31981772-31981791 None:intergenic 20.0%
!! TTAAAATATGAATGTTTGTC+CGG - chr5_2:31981773-31981792 Msa0768100:CDS 20.0%
!!! AAATTTGCATTTCAAGTAAA+TGG - chr5_2:31982652-31982671 Msa0768100:intron 20.0%
!! CATAGTAATAAAAAATAGCA+TGG + chr5_2:31982723-31982742 None:intergenic 20.0%
!!! ATCTTTTTCAAGAAATTAGA+AGG - chr5_2:31982969-31982988 Msa0768100:intron 20.0%
!! ATAACAAACGAAATATTTGA+TGG - chr5_2:31983414-31983433 Msa0768100:intron 20.0%
!! GCAAATTATTATAAGAGTAA+AGG - chr5_2:31983513-31983532 Msa0768100:intron 20.0%
!! AGTAAAGGAAAGATAATAAT+AGG - chr5_2:31983528-31983547 Msa0768100:intron 20.0%
!! GTAAAGGAAAGATAATAATA+GGG - chr5_2:31983529-31983548 Msa0768100:intron 20.0%
!! ATGATACATGATATTAGAAA+AGG - chr5_2:31983586-31983605 Msa0768100:intron 20.0%
!! TATATGATAAACTATGAACT+TGG - chr5_2:31983674-31983693 Msa0768100:intron 20.0%
!! TTTAGTTGTTTCGGAAAAAT+AGG - chr5_2:31977863-31977882 Msa0768100:three_prime_UTR 25.0%
!! TTAGTTGTTTCGGAAAAATA+GGG - chr5_2:31977864-31977883 Msa0768100:three_prime_UTR 25.0%
!! AATAGTTGTTTCGGAAAAAT+AGG - chr5_2:31977939-31977958 Msa0768100:three_prime_UTR 25.0%
!! ATAGTTGTTTCGGAAAAATA+GGG - chr5_2:31977940-31977959 Msa0768100:three_prime_UTR 25.0%
! AGTAAGTAAGATAGTTGTTT+CGG - chr5_2:31978182-31978201 Msa0768100:three_prime_UTR 25.0%
!! AATAGTTGTTTCGGAAAAAT+AGG - chr5_2:31977939-31977958 Msa0768100:three_prime_UTR 25.0%
!! ATAGTTGTTTCGGAAAAATA+GGG - chr5_2:31977940-31977959 Msa0768100:three_prime_UTR 25.0%
!!! AAACAAAAAAAGGGTATTTG+TGG + chr5_2:31978463-31978482 None:intergenic 25.0%
!!! ATACCCTTTTTTTGTTTGAT+TGG - chr5_2:31978466-31978485 Msa0768100:three_prime_UTR 25.0%
!!! TACCCTTTTTTTGTTTGATT+GGG - chr5_2:31978467-31978486 Msa0768100:three_prime_UTR 25.0%
! AACCCAATCAAACAAAAAAA+GGG + chr5_2:31978472-31978491 None:intergenic 25.0%
! AAACCCAATCAAACAAAAAA+AGG + chr5_2:31978473-31978492 None:intergenic 25.0%
!!! CGATGGTTTTTTTTTTTTTG+TGG - chr5_2:31978582-31978601 Msa0768100:three_prime_UTR 25.0%
!!! TTTTTTTTTTTGTGGGTTTC+TGG - chr5_2:31978590-31978609 Msa0768100:three_prime_UTR 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr5_2:31978816-31978835 Msa0768100:intron 25.0%
!!! CAGGGTTTGATTTTTTTATT+AGG - chr5_2:31978988-31979007 Msa0768100:intron 25.0%
! AACCTCTAATTTCTTTAATC+AGG - chr5_2:31979098-31979117 Msa0768100:CDS 25.0%
! TACCTGATTAAAGAAATTAG+AGG + chr5_2:31979103-31979122 None:intergenic 25.0%
! TATTAAATGACAGAATCATC+AGG - chr5_2:31979234-31979253 Msa0768100:CDS 25.0%
! ATGCTCCATATATTAAACTT+TGG - chr5_2:31979554-31979573 Msa0768100:intron 25.0%
! AGACACCAAAGTTTAATATA+TGG + chr5_2:31979562-31979581 None:intergenic 25.0%
! TCTTATACTGCAATACTAAA+TGG - chr5_2:31979647-31979666 Msa0768100:intron 25.0%
! CTAGATATATGTAAAACACA+AGG + chr5_2:31979923-31979942 None:intergenic 25.0%
! TCAAGGAATATTGCAAAATA+TGG - chr5_2:31979973-31979992 Msa0768100:intron 25.0%
! CTAGATATAAGTAAAACACA+AGG + chr5_2:31980041-31980060 None:intergenic 25.0%
! TAGAAAACAAAGTTTACAAG+TGG - chr5_2:31980058-31980077 Msa0768100:intron 25.0%
! TTCTGTACTAAAATTCAACA+TGG + chr5_2:31980353-31980372 None:intergenic 25.0%
!! ATATTGGACAAGTTTTTCTT+TGG - chr5_2:31980605-31980624 Msa0768100:CDS 25.0%
!! TATTGGACAAGTTTTTCTTT+GGG - chr5_2:31980606-31980625 Msa0768100:CDS 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr5_2:31980768-31980787 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr5_2:31980780-31980799 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr5_2:31980779-31980798 Msa0768100:CDS 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr5_2:31980836-31980855 Msa0768100:intron 25.0%
! AGTATATGACAATGTAAAAC+AGG - chr5_2:31980970-31980989 Msa0768100:intron 25.0%
! CTTCAACTTAAATGCATATT+TGG + chr5_2:31981034-31981053 None:intergenic 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr5_2:31981052-31981071 Msa0768100:CDS 25.0%
! CATAATATAGTCTTCAATCT+TGG + chr5_2:31981213-31981232 None:intergenic 25.0%
!! TTGTTTCTTCTTCACTATAT+AGG - chr5_2:31981296-31981315 Msa0768100:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr5_2:31981565-31981584 Msa0768100:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr5_2:31981573-31981592 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr5_2:31981572-31981591 Msa0768100:intron 25.0%
! CTGTAATAATATTGATCCTA+TGG + chr5_2:31981639-31981658 None:intergenic 25.0%
!!! ATAGCTAAGCCATTTTTTAA+AGG - chr5_2:31982193-31982212 Msa0768100:intron 25.0%
! ACTAACTTTGATCTGAATTT+GGG - chr5_2:31982407-31982426 Msa0768100:intron 25.0%
!!! TGATATCCTTTGTTTTCTTT+AGG + chr5_2:31982455-31982474 None:intergenic 25.0%
! ATGCAAATTTACTTCAATAC+TGG + chr5_2:31982642-31982661 None:intergenic 25.0%
! GTTATCTTTAAACTTATTCC+AGG - chr5_2:31982759-31982778 Msa0768100:intron 25.0%
! AATCAACTATCTTCTGTTAT+AGG + chr5_2:31982875-31982894 None:intergenic 25.0%
! AACAGAAGATAGTTGATTAT+TGG - chr5_2:31982877-31982896 Msa0768100:intron 25.0%
! GACAAAATACAATTACTATG+AGG - chr5_2:31983486-31983505 Msa0768100:intron 25.0%
TTAGAAAAGTGGAAGGAAAA+TGG - chr5_2:31977813-31977832 Msa0768100:three_prime_UTR 30.0%
TAGAAAAGTGGAAGGAAAAT+GGG - chr5_2:31977814-31977833 Msa0768100:three_prime_UTR 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr5_2:31977829-31977848 Msa0768100:three_prime_UTR 30.0%
GATCAATGGCAAAAATTGAA+TGG - chr5_2:31978065-31978084 Msa0768100:three_prime_UTR 30.0%
AAAAATGGGGGGAAAATATT+AGG - chr5_2:31978130-31978149 Msa0768100:three_prime_UTR 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr5_2:31977829-31977848 Msa0768100:three_prime_UTR 30.0%
AAGCTTCAATTACTCAACAA+TGG + chr5_2:31978345-31978364 None:intergenic 30.0%
!! AAAAATAAATGGGTTGGGAA+TGG - chr5_2:31978822-31978841 Msa0768100:intron 30.0%
!! TTTTTGTTTCGATGGTGATT+AGG - chr5_2:31978930-31978949 Msa0768100:intron 30.0%
!! TTTTGTTTCGATGGTGATTA+GGG - chr5_2:31978931-31978950 Msa0768100:intron 30.0%
! TTTGGGAAATTCAAGTTCTA+GGG - chr5_2:31979287-31979306 Msa0768100:intron 30.0%
! TAGTTTAGAGTTGATTGGTT+TGG - chr5_2:31979323-31979342 Msa0768100:intron 30.0%
!! AGTTTAGAGTTGATTGGTTT+GGG - chr5_2:31979324-31979343 Msa0768100:intron 30.0%
CAAGTCTACATTCTGTTTAT+AGG - chr5_2:31979514-31979533 Msa0768100:intron 30.0%
AACCATGTATAGATGTCATA+AGG - chr5_2:31979694-31979713 Msa0768100:intron 30.0%
AACCTTATGACATCTATACA+TGG + chr5_2:31979699-31979718 None:intergenic 30.0%
AACCATGTATAGATGTCATA+AGG - chr5_2:31979694-31979713 Msa0768100:intron 30.0%
TTCCTTATGACATCTATACA+TGG + chr5_2:31979739-31979758 None:intergenic 30.0%
TGTATAGATGTCATAAGGAA+AGG - chr5_2:31979739-31979758 Msa0768100:intron 30.0%
GTATAGATGTCATAAGGAAA+GGG - chr5_2:31979740-31979759 Msa0768100:intron 30.0%
ATAAAAATGAACAGAAGCAG+AGG + chr5_2:31980183-31980202 None:intergenic 30.0%
AAAATTCAACATGGAAACCA+AGG + chr5_2:31980344-31980363 None:intergenic 30.0%
! TGTTGTTTGTAATGTGAAGA+TGG - chr5_2:31980392-31980411 Msa0768100:intron 30.0%
CTATTGATACTCAACATGTT+GGG - chr5_2:31980578-31980597 Msa0768100:intron 30.0%
TATTGATACTCAACATGTTG+GGG - chr5_2:31980579-31980598 Msa0768100:intron 30.0%
!! TTTTTCTTTGGGAGAGATTA+TGG - chr5_2:31980617-31980636 Msa0768100:CDS 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr5_2:31980732-31980751 Msa0768100:intron 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr5_2:31980785-31980804 Msa0768100:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr5_2:31980786-31980805 Msa0768100:CDS 30.0%
ATTTCACATTACCTGAGATA+TGG + chr5_2:31980814-31980833 None:intergenic 30.0%
TGTAAAACAGGTTTGAATTC+TGG - chr5_2:31980982-31981001 Msa0768100:CDS 30.0%
AAGACTGAGAGTTTATTTAG+TGG - chr5_2:31981077-31981096 Msa0768100:intron 30.0%
AGACTGAGAGTTTATTTAGT+GGG - chr5_2:31981078-31981097 Msa0768100:intron 30.0%
GATTCTTAATTAGCTAGCAA+TGG - chr5_2:31981100-31981119 Msa0768100:intron 30.0%
! AAGCAATTTTTCATGGCTAA+AGG - chr5_2:31981159-31981178 Msa0768100:intron 30.0%
! TGTAGAATTATGCTGTGTTT+TGG - chr5_2:31981256-31981275 Msa0768100:CDS 30.0%
AGTGAAGAAGAAACAATCAA+TGG + chr5_2:31981292-31981311 None:intergenic 30.0%
TAGAGTATGAAATAACTGCA+CGG + chr5_2:31981512-31981531 None:intergenic 30.0%
ATTTGGTTAACTATAACGTC+AGG - chr5_2:31981589-31981608 Msa0768100:intron 30.0%
TTTGGTTAACTATAACGTCA+GGG - chr5_2:31981590-31981609 Msa0768100:intron 30.0%
AGGATCAATATTATTACAGC+AGG - chr5_2:31981640-31981659 Msa0768100:intron 30.0%
GTTGTACTTGACAAATTAGA+AGG + chr5_2:31981852-31981871 None:intergenic 30.0%
TATGTCCATCATCTAATGTA+TGG - chr5_2:31981972-31981991 Msa0768100:intron 30.0%
ATGTCCATCATCTAATGTAT+GGG - chr5_2:31981973-31981992 Msa0768100:intron 30.0%
ACACAATGAAACAAATCAGA+AGG + chr5_2:31982017-31982036 None:intergenic 30.0%
TTTGTTTCATTGTGTTCTTC+AGG - chr5_2:31982022-31982041 Msa0768100:intron 30.0%
TAAATTTGCAACTGTATCAG+AGG + chr5_2:31982083-31982102 None:intergenic 30.0%
AAAATGGCTTAGCTATGAAA+AGG + chr5_2:31982189-31982208 None:intergenic 30.0%
! CACAGTTTGCCTTTAAAAAA+TGG + chr5_2:31982205-31982224 None:intergenic 30.0%
ATCTTAACACATTACAGACA+AGG + chr5_2:31982306-31982325 None:intergenic 30.0%
GACTAACTTTGATCTGAATT+TGG - chr5_2:31982406-31982425 Msa0768100:intron 30.0%
!! TTTTCTTTAGGTTCATGTAC+TGG + chr5_2:31982443-31982462 None:intergenic 30.0%
CATGAACCTAAAGAAAACAA+AGG - chr5_2:31982446-31982465 Msa0768100:CDS 30.0%
! TTCAAACCTGAGTTTGTTTA+TGG - chr5_2:31982845-31982864 Msa0768100:intron 30.0%
TACATAGCAGAAATTCTTTG+AGG - chr5_2:31982924-31982943 Msa0768100:CDS 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr5_2:31983075-31983094 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr5_2:31983080-31983099 Msa0768100:intron 30.0%
!! GAAATATTTGATGGTGCTAA+AGG - chr5_2:31983423-31983442 Msa0768100:intron 30.0%
TAATAATAGGGTTTCCAGAT+AGG - chr5_2:31983541-31983560 Msa0768100:intron 30.0%
ATCATGTATCTCCTTATGAT+AGG + chr5_2:31983571-31983590 None:intergenic 30.0%
ACAAATAGTCTGCAATGAAA+AGG - chr5_2:31983620-31983639 Msa0768100:intron 30.0%
CAAGACTTTCAATATATGCA+TGG - chr5_2:31983763-31983782 Msa0768100:CDS 30.0%
AGAAAAGTGGAAGGAAAATG+GGG - chr5_2:31977815-31977834 Msa0768100:three_prime_UTR 35.0%
GAAAATGGGGGGAAAATATT+AGG - chr5_2:31977828-31977847 Msa0768100:three_prime_UTR 35.0%
!! AGGGTTAGCTTTAGTTGTTT+CGG - chr5_2:31977854-31977873 Msa0768100:three_prime_UTR 35.0%
TCTCTACTTCCGAAACAAAT+TGG + chr5_2:31977995-31978014 None:intergenic 35.0%
TAGAAAAGTGGAGGGAAAAA+TGG - chr5_2:31978115-31978134 Msa0768100:three_prime_UTR 35.0%
AGAAAAGTGGAGGGAAAAAT+GGG - chr5_2:31978116-31978135 Msa0768100:three_prime_UTR 35.0%
!! ATGGAGGTTTTGTGAGTTAT+GGG + chr5_2:31978326-31978345 None:intergenic 35.0%
!! AATGGAGGTTTTGTGAGTTA+TGG + chr5_2:31978327-31978346 None:intergenic 35.0%
CTTCAATTACTCAACAATGG+AGG + chr5_2:31978342-31978361 None:intergenic 35.0%
ACAGAAGTTACAGAGAATCA+AGG - chr5_2:31978396-31978415 Msa0768100:intron 35.0%
!! AAAAAGGGTATTTGTGGTTC+AGG + chr5_2:31978457-31978476 None:intergenic 35.0%
! CCATCGATTAAGAAAAATCC+AGG + chr5_2:31978568-31978587 None:intergenic 35.0%
! CCTGGATTTTTCTTAATCGA+TGG - chr5_2:31978565-31978584 Msa0768100:three_prime_UTR 35.0%
AAAGAAGATTGATGCAGATG+AGG - chr5_2:31978626-31978645 Msa0768100:three_prime_UTR 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG - chr5_2:31978664-31978683 Msa0768100:three_prime_UTR 35.0%
!! GAGAAAGGTGTTTGATTTGT+TGG - chr5_2:31979029-31979048 Msa0768100:intron 35.0%
TTCTGGTAAGCACTTCTAAT+TGG - chr5_2:31979149-31979168 Msa0768100:CDS 35.0%
! TCACGATTTGGATTTGAGTT+TGG - chr5_2:31979269-31979288 Msa0768100:intron 35.0%
! CACGATTTGGATTTGAGTTT+GGG - chr5_2:31979270-31979289 Msa0768100:intron 35.0%
! GTTTGGGAAATTCAAGTTCT+AGG - chr5_2:31979286-31979305 Msa0768100:intron 35.0%
!! GTTTAGAGTTGATTGGTTTG+GGG - chr5_2:31979325-31979344 Msa0768100:intron 35.0%
!! TGAGTTGTGTCACTTTGTTT+AGG - chr5_2:31979588-31979607 Msa0768100:intron 35.0%
!! GAGTTGTGTCACTTTGTTTA+GGG - chr5_2:31979589-31979608 Msa0768100:intron 35.0%
TATATTGGGAGAGAAAGCTA+AGG - chr5_2:31979796-31979815 Msa0768100:intron 35.0%
GAATCCTCTGAATTATACTC+AGG - chr5_2:31979877-31979896 Msa0768100:CDS 35.0%
CTAACCTGAGTATAATTCAG+AGG + chr5_2:31979884-31979903 None:intergenic 35.0%
AATATGGACATTGCTCTTGA+TGG - chr5_2:31979989-31980008 Msa0768100:intron 35.0%
TTATGATACCTGGATTCCAT+AGG + chr5_2:31980157-31980176 None:intergenic 35.0%
! TCATTTTCATGCAGTAGCTT+TGG - chr5_2:31980232-31980251 Msa0768100:CDS 35.0%
GATTCTACTGTTTATGACCT+TGG - chr5_2:31980324-31980343 Msa0768100:intron 35.0%
TTGTAATGTGAAGATGGAAC+AGG - chr5_2:31980398-31980417 Msa0768100:intron 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr5_2:31980465-31980484 Msa0768100:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr5_2:31980481-31980500 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr5_2:31980482-31980501 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr5_2:31980484-31980503 Msa0768100:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr5_2:31980495-31980514 Msa0768100:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr5_2:31980577-31980596 Msa0768100:intron 35.0%
CATTGTCATATACTGCAGAA+GGG + chr5_2:31980964-31980983 None:intergenic 35.0%
ACATTGTCATATACTGCAGA+AGG + chr5_2:31980965-31980984 None:intergenic 35.0%
TCAACATACTTATATGCAGC+TGG - chr5_2:31981008-31981027 Msa0768100:CDS 35.0%
AGGAAACAACTTCAAGTGAA+AGG - chr5_2:31981179-31981198 Msa0768100:intron 35.0%
ACTTCAAGTGAAAGGACAAT+AGG - chr5_2:31981187-31981206 Msa0768100:intron 35.0%
ACTATATAGGCAACAGCATT+TGG - chr5_2:31981309-31981328 Msa0768100:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr5_2:31981714-31981733 None:intergenic 35.0%
AGATCCCATACATTAGATGA+TGG + chr5_2:31981980-31981999 None:intergenic 35.0%
GGGAAAGACAACTCAAAAAA+TGG + chr5_2:31982113-31982132 None:intergenic 35.0%
ATATTCCACTCCTTGATCAA+CGG + chr5_2:31982134-31982153 None:intergenic 35.0%
!! GCTCTAAAGTTCTTGTCATT+TGG - chr5_2:31982224-31982243 Msa0768100:intron 35.0%
! AAAGTTCTTGTCATTTGGTG+AGG - chr5_2:31982229-31982248 Msa0768100:intron 35.0%
! AAGTTCTTGTCATTTGGTGA+GGG - chr5_2:31982230-31982249 Msa0768100:intron 35.0%
CCAGAAAGAGAGAAACATAT+TGG + chr5_2:31982334-31982353 None:intergenic 35.0%
CCAATATGTTTCTCTCTTTC+TGG - chr5_2:31982331-31982350 Msa0768100:intron 35.0%
! TTTCTCTCTTTCTGGAAATC+AGG - chr5_2:31982339-31982358 Msa0768100:intron 35.0%
! TTCTCTCTTTCTGGAAATCA+GGG - chr5_2:31982340-31982359 Msa0768100:intron 35.0%
!! AAAGCAGCTCTAAAATGCAA+GGG - chr5_2:31982371-31982390 Msa0768100:intron 35.0%
TATACCTTTAAACTCCTTCG+AGG + chr5_2:31982512-31982531 None:intergenic 35.0%
! CTGGAAGAAATTGCTTTGAA+AGG + chr5_2:31982623-31982642 None:intergenic 35.0%
GCATGGAAATCTTATGACAT+AGG + chr5_2:31982706-31982725 None:intergenic 35.0%
GCAGATGATGATTACATATC+AGG - chr5_2:31983243-31983262 Msa0768100:intron 35.0%
! TGTATTTTGTCGCATGCATA+GGG + chr5_2:31983477-31983496 None:intergenic 35.0%
! TTGTATTTTGTCGCATGCAT+AGG + chr5_2:31983478-31983497 None:intergenic 35.0%
TTATGATAGGCAATCCTATC+TGG + chr5_2:31983558-31983577 None:intergenic 35.0%
AGATAGGATTGCCTATCATA+AGG - chr5_2:31983557-31983576 Msa0768100:intron 35.0%
TGATATTAGAAAAGGATCCC+TGG - chr5_2:31983594-31983613 Msa0768100:intron 35.0%
CCATTGGATCTTGCACATTT+AGG + chr5_2:31977792-31977811 None:intergenic 40.0%
CCTAAATGTGCAAGATCCAA+TGG - chr5_2:31977789-31977808 Msa0768100:three_prime_UTR 40.0%
GATCCAATGGCTTAGAAAAG+TGG - chr5_2:31977802-31977821 Msa0768100:three_prime_UTR 40.0%
!! CTTCCACTTTTCTAAGCCAT+TGG + chr5_2:31977808-31977827 None:intergenic 40.0%
CAATGGCTTAGAAAAGTGGA+AGG - chr5_2:31977806-31977825 Msa0768100:three_prime_UTR 40.0%
GAAAAGTGGAAGGAAAATGG+GGG - chr5_2:31977816-31977835 Msa0768100:three_prime_UTR 40.0%
AAAAGTGGAAGGAAAATGGG+GGG - chr5_2:31977817-31977836 Msa0768100:three_prime_UTR 40.0%
GGGGGAAAATATTAGGGTTA+GGG - chr5_2:31977835-31977854 Msa0768100:three_prime_UTR 40.0%
! GTTGTAGGGCCAATTTGTTT+CGG - chr5_2:31977983-31978002 Msa0768100:three_prime_UTR 40.0%
CCATTGGATCTTGCACATTT+AGG + chr5_2:31977792-31977811 None:intergenic 40.0%
CCTAAATGTGCAAGATCCAA+TGG - chr5_2:31977789-31977808 Msa0768100:three_prime_UTR 40.0%
GATCCAATGGCTTAGAAAAG+TGG - chr5_2:31977802-31977821 Msa0768100:three_prime_UTR 40.0%
CAATGGCTTAGAAAAGTGGA+GGG - chr5_2:31977806-31977825 Msa0768100:three_prime_UTR 40.0%
GAAAAGTGGAGGGAAAAATG+GGG - chr5_2:31978117-31978136 Msa0768100:three_prime_UTR 40.0%
AAAAGTGGAGGGAAAAATGG+GGG - chr5_2:31978118-31978137 Msa0768100:three_prime_UTR 40.0%
GGGGGAAAATATTAGGGTTA+GGG - chr5_2:31977835-31977854 Msa0768100:three_prime_UTR 40.0%
!! TTAGGGTTAGGGTTAGCTTT+AGG - chr5_2:31977846-31977865 Msa0768100:three_prime_UTR 40.0%
!! TAGGGTTAGGGTTAGCTTTA+GGG - chr5_2:31977847-31977866 Msa0768100:three_prime_UTR 40.0%
TTTGTGAGTTATGGGTGAGA+GGG + chr5_2:31978318-31978337 None:intergenic 40.0%
! TTTTGTGAGTTATGGGTGAG+AGG + chr5_2:31978319-31978338 None:intergenic 40.0%
TACAGAGAATCAAGGTGAGT+TGG - chr5_2:31978404-31978423 Msa0768100:intron 40.0%
ACAGAGAATCAAGGTGAGTT+GGG - chr5_2:31978405-31978424 Msa0768100:intron 40.0%
GAGGAAAGAATTGATGCAGA+TGG - chr5_2:31978645-31978664 Msa0768100:three_prime_UTR 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr5_2:31978656-31978675 Msa0768100:three_prime_UTR 40.0%
GATGGAAAGAAGAAGGAAGA+AGG - chr5_2:31978663-31978682 Msa0768100:three_prime_UTR 40.0%
GAGACATTACCTCAAACACT+TGG + chr5_2:31978854-31978873 None:intergenic 40.0%
TAATGCTGCAGATCACGATT+TGG - chr5_2:31979257-31979276 Msa0768100:intron 40.0%
!!! GATTGGTTTGGGGTTTGTTT+TGG - chr5_2:31979335-31979354 Msa0768100:intron 40.0%
TAAACTCACGACAGGTAATG+AGG - chr5_2:31980119-31980138 Msa0768100:intron 40.0%
TTTGATTCCCATAAAGCGTG+TGG - chr5_2:31980296-31980315 Msa0768100:intron 40.0%
AATAAATGGAGCAGCAAAGG+AGG - chr5_2:31980498-31980517 Msa0768100:intron 40.0%
AGCAGTATTAGCTGTGACAA+AGG - chr5_2:31980531-31980550 Msa0768100:intron 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr5_2:31980589-31980608 Msa0768100:intron 40.0%
! ATTGATCCTATGGAAAGCGT+TGG + chr5_2:31981629-31981648 None:intergenic 40.0%
ATTCCACAATTTCGACGTTG+CGG + chr5_2:31981691-31981710 None:intergenic 40.0%
ACACCTGATAAGATCACATC+CGG + chr5_2:31981795-31981814 None:intergenic 40.0%
TATTCCACTCCTTGATCAAC+GGG + chr5_2:31982133-31982152 None:intergenic 40.0%
ACTACAACACATGCACAATG+GGG + chr5_2:31982260-31982279 None:intergenic 40.0%
GACTACAACACATGCACAAT+GGG + chr5_2:31982261-31982280 None:intergenic 40.0%
AGACTACAACACATGCACAA+TGG + chr5_2:31982262-31982281 None:intergenic 40.0%
!! CAAAGCAGCTCTAAAATGCA+AGG - chr5_2:31982370-31982389 Msa0768100:intron 40.0%
! TCTAAAATGCAAGGGAAGAG+AGG - chr5_2:31982379-31982398 Msa0768100:intron 40.0%
CTTTGATCTGAATTTGGGCA+TGG - chr5_2:31982412-31982431 Msa0768100:intron 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr5_2:31982985-31983004 Msa0768100:intron 40.0%
GGTGAGGTCTAAATCTTTCA+AGG + chr5_2:31983036-31983055 None:intergenic 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr5_2:31983091-31983110 Msa0768100:intron 40.0%
TGTTCTATTGCAACCTGCTT+AGG - chr5_2:31983201-31983220 Msa0768100:intron 40.0%
ATTAGAGAGCTAACCTAAGC+AGG + chr5_2:31983217-31983236 None:intergenic 40.0%
GAGCTATTTGCAAGGCTATA+TGG + chr5_2:31983386-31983405 None:intergenic 40.0%
CTGTCATTGAGCTATTTGCA+AGG + chr5_2:31983394-31983413 None:intergenic 40.0%
TGCAGACTATTTGTAAGCCA+GGG + chr5_2:31983614-31983633 None:intergenic 40.0%
TTGCAGACTATTTGTAAGCC+AGG + chr5_2:31983615-31983634 None:intergenic 40.0%
GGGGGGAAAATATTAGGGTT+AGG - chr5_2:31977834-31977853 Msa0768100:three_prime_UTR 45.0%
!! CCTCCACTTTTCTAAGCCAT+TGG + chr5_2:31978109-31978128 None:intergenic 45.0%
CCAATGGCTTAGAAAAGTGG+AGG - chr5_2:31977805-31977824 Msa0768100:three_prime_UTR 45.0%
AAAGTGGAGGGAAAAATGGG+GGG - chr5_2:31978119-31978138 Msa0768100:three_prime_UTR 45.0%
GGGGGGAAAATATTAGGGTT+AGG - chr5_2:31977834-31977853 Msa0768100:three_prime_UTR 45.0%
!! AGGGTTAGGGTTAGCTTTAG+GGG - chr5_2:31977848-31977867 Msa0768100:three_prime_UTR 45.0%
! ATGCAAGTTGGGGAAGAAGA+AGG + chr5_2:31978292-31978311 None:intergenic 45.0%
! TGAGAGGGAGTATGCAAGTT+GGG + chr5_2:31978303-31978322 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG - chr5_2:31978684-31978703 Msa0768100:three_prime_UTR 45.0%
GTTTCGATGGTGATTAGGGT+TGG - chr5_2:31978935-31978954 Msa0768100:intron 45.0%
GTCATCGATAAACTCACGAC+AGG - chr5_2:31980111-31980130 Msa0768100:intron 45.0%
GCAGAGGAGTTTATGATACC+TGG + chr5_2:31980167-31980186 None:intergenic 45.0%
TCCTGATCCACACGCTTTAT+GGG + chr5_2:31980306-31980325 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG + chr5_2:31980307-31980326 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr5_2:31980471-31980490 Msa0768100:intron 45.0%
TCCAGAAACTTCCATTCCTC+TGG + chr5_2:31980557-31980576 None:intergenic 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - chr5_2:31980737-31980756 Msa0768100:intron 45.0%
TGGAGCCCAAAACCATAGTA+AGG + chr5_2:31980794-31980813 None:intergenic 45.0%
GAATTGCGATTTGCAGTCCA+AGG - chr5_2:31980910-31980929 Msa0768100:intron 45.0%
ACCGTATCCAATTTGATCCG+CGG + chr5_2:31981357-31981376 None:intergenic 45.0%
ATTGTCTGCATTCTGCGAGA+AGG - chr5_2:31981383-31981402 Msa0768100:intron 45.0%
! ACTATAACGTCAGGGTGTCT+TGG - chr5_2:31981598-31981617 Msa0768100:intron 45.0%
CAATTTCGACGTTGCGGTAA+TGG + chr5_2:31981685-31981704 None:intergenic 45.0%
TTACCGCAACGTCGAAATTG+TGG - chr5_2:31981685-31981704 Msa0768100:intron 45.0%
CGTCGAAATTGTGGAATCCA+AGG - chr5_2:31981694-31981713 Msa0768100:CDS 45.0%
TGTCCGGATGTGATCTTATC+AGG - chr5_2:31981789-31981808 Msa0768100:intron 45.0%
GTTGTCTTTCCCGTTGATCA+AGG - chr5_2:31982121-31982140 Msa0768100:intron 45.0%
TTAAACTCCTTCGAGGATGC+AGG + chr5_2:31982505-31982524 None:intergenic 45.0%
GCATCCTCGAAGGAGTTTAA+AGG - chr5_2:31982505-31982524 Msa0768100:intron 45.0%
TTCCTTGAGTCTCTCTTGTG+AGG + chr5_2:31982824-31982843 None:intergenic 45.0%
GGCAAGCCATAAACAAACTC+AGG + chr5_2:31982854-31982873 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCATA+AGG - chr5_2:31983002-31983021 Msa0768100:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG + chr5_2:31983017-31983036 None:intergenic 45.0%
TCTGGTGTATGCAGCAAGAA+GGG + chr5_2:31983057-31983076 None:intergenic 45.0%
ATAGCCTCTTCACTTAGGCT+TGG + chr5_2:31983136-31983155 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG + chr5_2:31983141-31983160 None:intergenic 45.0%
CACTGATACAAGAGCCTTGA+TGG - chr5_2:31983277-31983296 Msa0768100:intron 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr5_2:31983294-31983313 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr5_2:31983297-31983316 Msa0768100:intron 45.0%
AATATGCTCCCCCAACTGAT+TGG - chr5_2:31983451-31983470 Msa0768100:intron 45.0%
ATGCATAGGGCCAATCAGTT+GGG + chr5_2:31983464-31983483 None:intergenic 45.0%
!!! TTTTACTAATATATTAAATT+TGG + chr5_2:31982557-31982576 None:intergenic 5.0%
! CAAGTTGGGGAAGAAGAAGG+AGG + chr5_2:31978289-31978308 None:intergenic 50.0%
! GAGAGGGAGTATGCAAGTTG+GGG + chr5_2:31978302-31978321 None:intergenic 50.0%
! GTGAGAGGGAGTATGCAAGT+TGG + chr5_2:31978304-31978323 None:intergenic 50.0%
TGGCACTCACCAAGTGTTTG+AGG - chr5_2:31978842-31978861 Msa0768100:intron 50.0%
TCCCATAAAGCGTGTGGATC+AGG - chr5_2:31980302-31980321 Msa0768100:intron 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr5_2:31980502-31980521 Msa0768100:intron 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - chr5_2:31980538-31980557 Msa0768100:intron 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - chr5_2:31980543-31980562 Msa0768100:intron 50.0%
GCCAGAGGAATGGAAGTTTC+TGG - chr5_2:31980553-31980572 Msa0768100:intron 50.0%
CTTCCATGCCACAAAGCTAC+AGG + chr5_2:31980743-31980762 None:intergenic 50.0%
!!! GGTTTTGGGCTCCATATCTC+AGG - chr5_2:31980800-31980819 Msa0768100:CDS 50.0%
GAAATCGACTACAACCGCTG+TGG + chr5_2:31980936-31980955 None:intergenic 50.0%
!! AAAGCGTTGTGTACATGCCG+CGG - chr5_2:31981337-31981356 Msa0768100:intron 50.0%
GTACATGCCGCGGATCAAAT+TGG - chr5_2:31981347-31981366 Msa0768100:intron 50.0%
GCCGCGGATCAAATTGGATA+CGG - chr5_2:31981353-31981372 Msa0768100:intron 50.0%
GTTGCTCCAACGCTTTCCAT+AGG - chr5_2:31981620-31981639 Msa0768100:intron 50.0%
CTTTCCCGTTGATCAAGGAG+TGG - chr5_2:31982126-31982145 Msa0768100:intron 50.0%
CAACACATGCACAATGGGGT+TGG + chr5_2:31982256-31982275 None:intergenic 50.0%
CTTACAACCTGCATCCTCGA+AGG - chr5_2:31982495-31982514 Msa0768100:intron 50.0%
TTCATCCATGGGCTCTTCAC+AGG - chr5_2:31982783-31982802 Msa0768100:intron 50.0%
AGCCTCACAAGAGAGACTCA+AGG - chr5_2:31982819-31982838 Msa0768100:intron 50.0%
! CAAGGATGTGCAGCCTTATG+AGG + chr5_2:31983018-31983037 None:intergenic 50.0%
TGTATGCAGCAAGAAGGGTG+AGG + chr5_2:31983052-31983071 None:intergenic 50.0%
CTCTGGTGTATGCAGCAAGA+AGG + chr5_2:31983058-31983077 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG - chr5_2:31983129-31983148 Msa0768100:intron 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr5_2:31983290-31983309 Msa0768100:intron 50.0%
TGCATAGGGCCAATCAGTTG+GGG + chr5_2:31983463-31983482 None:intergenic 50.0%
CATGCATAGGGCCAATCAGT+TGG + chr5_2:31983465-31983484 None:intergenic 50.0%
GAGGACTTCTGAGTCGCCTA+TGG - chr5_2:31980138-31980157 Msa0768100:intron 55.0%
CTGAGTCGCCTATGGAATCC+AGG - chr5_2:31980146-31980165 Msa0768100:intron 55.0%
TTTGCAGTCCAAGGCCACAG+CGG - chr5_2:31980919-31980938 Msa0768100:intron 55.0%
ATTCTGCGAGAAGGCCAGCA+TGG - chr5_2:31981392-31981411 Msa0768100:intron 55.0%
AAGGCCAGCATGGTGAGCAA+GGG - chr5_2:31981402-31981421 Msa0768100:intron 55.0%
CACTTCCTGTGAAGAGCCCA+TGG + chr5_2:31982791-31982810 None:intergenic 55.0%
CATGGGCTCTTCACAGGAAG+TGG - chr5_2:31982789-31982808 Msa0768100:intron 55.0%
GCATAGGGCCAATCAGTTGG+GGG + chr5_2:31983462-31983481 None:intergenic 55.0%
GACTACAACCGCTGTGGCCT+TGG + chr5_2:31980930-31980949 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG - chr5_2:31981401-31981420 Msa0768100:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG - chr5_2:31981403-31981422 Msa0768100:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + chr5_2:31981409-31981428 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 31977783 31983805 31977783 ID=Msa0768100;Name=Msa0768100
chr5_2 mRNA 31977783 31983805 31977783 ID=Msa0768100-mRNA-1;Parent=Msa0768100;Name=Msa0768100-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.53|0.43|0.87|0.93|0.87|16|877|462
chr5_2 exon 31977783 31978341 31977783 ID=Msa0768100-mRNA-1:exon:11729;Parent=Msa0768100-mRNA-1
chr5_2 exon 31978415 31978807 31978415 ID=Msa0768100-mRNA-1:exon:11728;Parent=Msa0768100-mRNA-1
chr5_2 exon 31979062 31979264 31979062 ID=Msa0768100-mRNA-1:exon:11727;Parent=Msa0768100-mRNA-1
chr5_2 exon 31979343 31979391 31979343 ID=Msa0768100-mRNA-1:exon:11726;Parent=Msa0768100-mRNA-1
chr5_2 exon 31979861 31979977 31979861 ID=Msa0768100-mRNA-1:exon:11725;Parent=Msa0768100-mRNA-1
chr5_2 exon 31980175 31980270 31980175 ID=Msa0768100-mRNA-1:exon:11724;Parent=Msa0768100-mRNA-1
chr5_2 exon 31980597 31980662 31980597 ID=Msa0768100-mRNA-1:exon:11723;Parent=Msa0768100-mRNA-1
chr5_2 exon 31980767 31980841 31980767 ID=Msa0768100-mRNA-1:exon:11722;Parent=Msa0768100-mRNA-1
chr5_2 exon 31980973 31981095 31980973 ID=Msa0768100-mRNA-1:exon:11721;Parent=Msa0768100-mRNA-1
chr5_2 exon 31981235 31981306 31981235 ID=Msa0768100-mRNA-1:exon:11720;Parent=Msa0768100-mRNA-1
chr5_2 exon 31981456 31981527 31981456 ID=Msa0768100-mRNA-1:exon:11719;Parent=Msa0768100-mRNA-1
chr5_2 exon 31981690 31981805 31981690 ID=Msa0768100-mRNA-1:exon:11718;Parent=Msa0768100-mRNA-1
chr5_2 exon 31982249 31982341 31982249 ID=Msa0768100-mRNA-1:exon:11717;Parent=Msa0768100-mRNA-1
chr5_2 exon 31982435 31982512 31982435 ID=Msa0768100-mRNA-1:exon:11716;Parent=Msa0768100-mRNA-1
chr5_2 exon 31982883 31982962 31982883 ID=Msa0768100-mRNA-1:exon:11715;Parent=Msa0768100-mRNA-1
chr5_2 exon 31983732 31983805 31983732 ID=Msa0768100-mRNA-1:exon:11714;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31983732 31983805 31983732 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31982883 31982962 31982883 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31982435 31982512 31982435 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31982249 31982341 31982249 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31981690 31981805 31981690 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31981456 31981527 31981456 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31981235 31981306 31981235 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31980973 31981095 31980973 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31980767 31980841 31980767 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31980597 31980662 31980597 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31980175 31980270 31980175 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31979861 31979977 31979861 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31979343 31979391 31979343 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31979062 31979264 31979062 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 CDS 31978733 31978807 31978733 ID=Msa0768100-mRNA-1:cds;Parent=Msa0768100-mRNA-1
chr5_2 three_prime_UTR 31978415 31978732 31978415 ID=Msa0768100-mRNA-1:three_prime_utr;Parent=Msa0768100-mRNA-1
chr5_2 three_prime_UTR 31977783 31978341 31977783 ID=Msa0768100-mRNA-1:three_prime_utr;Parent=Msa0768100-mRNA-1
Gene Sequence

>Msa0768100

ATGGCGCCTAAATGTGCAAGATCCAATGGCTTAGAAAAGTGGAAGGAAAATGGGGGGAAAATATTAGGGTTAGGAAAGAAGATTGATGCAGATGAGGAAAGAATTGATGCAGATGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAAGCTGAAGTGTTTTCACTTTTGATGATAACCTCTAATTTCTTTAATCAGGTAAACAACATATATGATAATGAACTTAATTCTGAATCATCAGGTAATGCTGCAGATCACGATTTGGATTTGAGTTTGGGAAATTCAAGTTCTAGGGTTGATGCTTTTTATAGTTTAGAGTTGATTGAGATAAAGTATGTTATATTGGGAGAGAAAGCTAAGGCTCAGTTGATTTGTGACTCAAAGAAAGACATTGCACTCAGTTTAACTGAAATACAAAAGAATCCTCTGAATTATACTCAGAAAACAAAGTTTACAAGTGGTACTGAATTAGTTTGTTTTAACGCTACAAAGTCATCGATAAACTCACGACAGATTTTTTCAAATATTTTGATTCCCATAAAGCGTGTGGATCAGGATTCTACTGTTTATGACCTTGGTTTCCATGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTTCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAACTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGCTCCATATCTCAGTCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCTGCAGTATATGACAATGTAAAACAGGCAACAGCATTTGGCATGAAAAGCGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTATTACAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAACGTCGAAATTGTGGAATCCAAGGCTAATGCAAATCTAAGCCATTTTTTAAAGGCAAACTGTGCTCTAAAGTTCTTGTCATTTGATTCTAGCCAATATGTTTCTCTCTTTCTGGAAATCAGGGCTTATGACAAAGCAGCTCTAAAATGCAAGGGAAGAGAGGCAGTGACTAACTTTGATCTGAATTTGGGCATGGCGACTCCAGTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCAGACTGTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGA
Protein sequence

>Msa0768100

MAPKCARSNGLEKWKENGGKILGLGKKIDADEERIDADGKKKEEGNALFKAEVFSLLMITSNFFNQVNNIYDNELNSESSGNAADHDLDLSLGNSSSRVDAFYSLELIEIKYVILGEKAKAQLICDSKKDIALSLTEIQKNPLNYTQKTKFTSGTELVCFNATKSSINSRQIFSNILIPIKRVDQDSTVYDLGFHVVINGAAKEVGRAAVLAVTKARGMEVSGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNVKQATAFGMKSVVYMPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANLSHFLKANCALKFLSFDSSQYVSLFLEIRAYDKAALKCKGREAVTNFDLNLGMATPVHEPKENKGYHQFQTVSSYNLHPRRSLKVSSMGSSQEVEIKASQERLKEFQT*