Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579270 | XP_039688901.1 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579270 | sp|Q39092|ZAT1_ARATH | 55.000 | 60 | 21 | 2 | 446 | 505 | 206 | 259 | 6.77e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579270 | A0A396I8U1 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0579270 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579270 | Msa0579410 | 0.939265 | 1.698457e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579270 | MtrunA17_Chr4g0043071 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Msa0579270 | MtrunA17_Chr5g0418821 | 44.425 | 565 | 191 | 25 | 9 | 505 | 5 | 514 | 1.45e-87 | 278 |
| Msa0579270 | MtrunA17_Chr4g0061301 | 30.952 | 546 | 265 | 24 | 7 | 505 | 10 | 490 | 9.77e-51 | 181 |
| Msa0579270 | MtrunA17_Chr3g0086331 | 32.314 | 229 | 117 | 7 | 7 | 225 | 37 | 237 | 1.31e-16 | 82.4 |
| Msa0579270 | MtrunA17_Chr7g0231181 | 50.847 | 59 | 28 | 1 | 447 | 505 | 284 | 341 | 5.74e-14 | 73.6 |
| Msa0579270 | MtrunA17_Chr4g0056091 | 48.387 | 62 | 29 | 1 | 447 | 505 | 244 | 305 | 3.12e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579270 | AT1G26610.1 | 37.996 | 529 | 230 | 23 | 1 | 505 | 1 | 455 | 1.89e-73 | 240 |
| Msa0579270 | AT1G26590.4 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579270 | AT1G26590.3 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579270 | AT1G26590.1 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579270 | AT1G26590.2 | 29.528 | 508 | 199 | 21 | 1 | 501 | 19 | 374 | 6.87e-25 | 106 |
| Msa0579270 | AT1G02030.1 | 55.000 | 60 | 21 | 2 | 446 | 505 | 206 | 259 | 6.88e-12 | 66.2 |
| Msa0579270 | AT3G60580.1 | 52.632 | 57 | 27 | 0 | 449 | 505 | 224 | 280 | 1.32e-11 | 65.9 |
Find 65 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCTTCTTCTGTTAA+TGG | 0.176069 | 4_1:+83940683 | Msa0579270:CDS |
| CTTTCTATTCACAGCTTTAC+TGG | 0.265058 | 4_1:-83941380 | None:intergenic |
| CCTGCTCCTGTTGATGAATA+AGG | 0.266269 | 4_1:+83941616 | Msa0579270:CDS |
| GATGGTGGAAACCTCATTTA+TGG | 0.318116 | 4_1:+83940311 | Msa0579270:CDS |
| CTGCTACAACAATGAATCTA+AGG | 0.340412 | 4_1:+83940609 | Msa0579270:CDS |
| GATTCGAGGGATTTCAGATA+TGG | 0.370754 | 4_1:+83940974 | Msa0579270:CDS |
| TTTCCTTGTGGGAAGTCTCT+TGG | 0.374186 | 4_1:+83940167 | Msa0579270:CDS |
| TCGAAGATTGTTATCAGAAA+TGG | 0.375407 | 4_1:+83940857 | Msa0579270:CDS |
| ATCTGTTTCTGAGATGGAAC+AGG | 0.383756 | 4_1:+83940715 | Msa0579270:CDS |
| CTTCCTATGTTTCTCTTCCA+TGG | 0.384515 | 4_1:-83940117 | None:intergenic |
| CCTTCATTGAAAGCACTTTG+TGG | 0.392261 | 4_1:+83940482 | Msa0579270:CDS |
| CATGTTGCTGCTGGTGGTGC+CGG | 0.395565 | 4_1:+83940275 | Msa0579270:CDS |
| AGGTACGATGGATAAGGATT+TGG | 0.397075 | 4_1:+83941135 | Msa0579270:CDS |
| GCTGCTGAGCATGTTGCTGC+TGG | 0.397482 | 4_1:+83940266 | Msa0579270:CDS |
| AGAAAGAAAGCAAACTTTGA+AGG | 0.397607 | 4_1:+83941181 | Msa0579270:CDS |
| GATTTATCTGCTTCCACCTT+AGG | 0.403922 | 4_1:-83941052 | None:intergenic |
| TTCAGGTCAGGACAAGCATT+AGG | 0.413798 | 4_1:+83941490 | Msa0579270:CDS |
| GGTGGTGCCGGTGCCGGTGC+TGG | 0.421213 | 4_1:+83940287 | Msa0579270:CDS |
| TTCTTCATCTGTTTCTGAGA+TGG | 0.422661 | 4_1:+83940709 | Msa0579270:CDS |
| ACAACTATGTTTAAGAAATC+AGG | 0.422976 | 4_1:+83941115 | Msa0579270:CDS |
| GCTGCTGGTGGTGCCGGTGC+CGG | 0.427491 | 4_1:+83940281 | Msa0579270:CDS |
| GGAAATCTAAGAGAAGGATT+AGG | 0.438686 | 4_1:+83940630 | Msa0579270:CDS |
| GCCGGTGCCGGTGCTGGTGA+TGG | 0.439012 | 4_1:+83940293 | Msa0579270:CDS |
| CCTTGTGGGAAGTCTCTTGG+TGG | 0.447606 | 4_1:+83940170 | Msa0579270:CDS |
| GCTTCAAGAGGTTTCCTTGT+GGG | 0.455991 | 4_1:+83940156 | Msa0579270:CDS |
| GAAGATCAACAAGGCTATGA+TGG | 0.459880 | 4_1:+83940535 | Msa0579270:CDS |
| AAGAAGAAGCTGAAGATGGT+TGG | 0.469191 | 4_1:+83940929 | Msa0579270:CDS |
| AGAAGAAGCTGAAGATGGTT+GGG | 0.477085 | 4_1:+83940930 | Msa0579270:CDS |
| GAAATCAGGTACGATGGATA+AGG | 0.482279 | 4_1:+83941129 | Msa0579270:CDS |
| CCTTATTCATCAACAGGAGC+AGG | 0.483736 | 4_1:-83941616 | None:intergenic |
| GCTGAGCATGTTGCTGCTGG+TGG | 0.495499 | 4_1:+83940269 | Msa0579270:CDS |
| AATGAAGAAATCTATGAGAA+TGG | 0.504427 | 4_1:+83941223 | Msa0579270:CDS |
| GAAGAAGAAGAAGCTGAAGA+TGG | 0.505492 | 4_1:+83940925 | Msa0579270:CDS |
| CCACAAAGTGCTTTCAATGA+AGG | 0.507655 | 4_1:-83940482 | None:intergenic |
| AGCAGATAAATCTGGATTTG+AGG | 0.507748 | 4_1:+83941063 | Msa0579270:CDS |
| AAGGTGGAAGCAGATAAATC+TGG | 0.519283 | 4_1:+83941055 | Msa0579270:CDS |
| TTTCTCTTAGACCATAAATG+AGG | 0.525256 | 4_1:-83940322 | None:intergenic |
| TCTTCTTCTTCTGTTAATGG+TGG | 0.530303 | 4_1:+83940686 | Msa0579270:CDS |
| TATGCAAATATTGCTTCAAG+AGG | 0.533843 | 4_1:+83940144 | Msa0579270:CDS |
| GTTTCCACCATCACCAGCAC+CGG | 0.547595 | 4_1:-83940300 | None:intergenic |
| GAAAGCACTTTGTGGTCACA+TGG | 0.555106 | 4_1:+83940490 | Msa0579270:CDS |
| GGTGCCGGTGCTGGTGATGG+TGG | 0.560885 | 4_1:+83940296 | Msa0579270:CDS |
| TTTGAATAATTCGGATTCGA+GGG | 0.562179 | 4_1:+83940961 | Msa0579270:CDS |
| ACCATCACCAGCACCGGCAC+CGG | 0.565694 | 4_1:-83940294 | None:intergenic |
| AAACCATGGAAGAGAAACAT+AGG | 0.566286 | 4_1:+83940114 | None:intergenic |
| TTTCAAGCTATGAATTCAAG+AGG | 0.573385 | 4_1:+83941029 | Msa0579270:CDS |
| CAACAAGGCTATGATGGAGG+AGG | 0.578283 | 4_1:+83940541 | Msa0579270:CDS |
| ATCTAAGGAAATCTAAGAGA+AGG | 0.581198 | 4_1:+83940624 | Msa0579270:CDS |
| CTATGAATTCAAGAGGCCTA+AGG | 0.586326 | 4_1:+83941036 | Msa0579270:CDS |
| TAATGCTCGTGAGTTTGTTG+CGG | 0.608198 | 4_1:+83940898 | Msa0579270:CDS |
| TGAATTCAAGAGGCCTAAGG+TGG | 0.609568 | 4_1:+83941039 | Msa0579270:CDS |
| AGGTCAGGACAAGCATTAGG+AGG | 0.611093 | 4_1:+83941493 | Msa0579270:CDS |
| AAGAAATTATCAAGCAACAA+GGG | 0.615423 | 4_1:+83941400 | Msa0579270:CDS |
| TGCTACTGCTGCAACCACAT+TGG | 0.618871 | 4_1:+83940412 | Msa0579270:CDS |
| AAGCTGAAGATGGTTGGGAT+CGG | 0.620650 | 4_1:+83940935 | Msa0579270:CDS |
| CCATTAACAGAAGAAGAAGA+AGG | 0.621252 | 4_1:-83940683 | None:intergenic |
| GTTTAAGAAATCAGGTACGA+TGG | 0.632267 | 4_1:+83941123 | Msa0579270:CDS |
| AACAACAAGAAGAAGTTGCT+AGG | 0.632715 | 4_1:+83940738 | Msa0579270:CDS |
| AAAGAAATTATCAAGCAACA+AGG | 0.646880 | 4_1:+83941399 | Msa0579270:CDS |
| TGCTTCAAGAGGTTTCCTTG+TGG | 0.652030 | 4_1:+83940155 | Msa0579270:CDS |
| GATCAACAAGGCTATGATGG+AGG | 0.660663 | 4_1:+83940538 | Msa0579270:CDS |
| CCACCAAGAGACTTCCCACA+AGG | 0.666617 | 4_1:-83940170 | None:intergenic |
| AAAATCCCAAGAAAACAATG+AGG | 0.685206 | 4_1:+83940342 | Msa0579270:CDS |
| AGATTGAGATCAATCAAACA+AGG | 0.701265 | 4_1:-83941592 | None:intergenic |
| GAAAGAGAAGAAGATCAACA+AGG | 0.702925 | 4_1:+83940526 | Msa0579270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATGAAATATGAGTTTTT+TGG | + | chr4_1:83941253-83941272 | Msa0579270:CDS | 20.0% |
| !!! | AGTATGAAATATGAGTTTTT+TGG | + | chr4_1:83941253-83941272 | Msa0579270:CDS | 20.0% |
| !! | ATCAAATTTTGCAAAGAATG+TGG | + | chr4_1:83940449-83940468 | Msa0579270:CDS | 25.0% |
| !! | TCAAATTTTGCAAAGAATGT+GGG | + | chr4_1:83940450-83940469 | Msa0579270:CDS | 25.0% |
| !!! | TTGTTGTCTAGAGATTTTTT+TGG | + | chr4_1:83940770-83940789 | Msa0579270:CDS | 25.0% |
| !!! | TAGAGATTTTTTTGGTCATA+AGG | + | chr4_1:83940778-83940797 | Msa0579270:CDS | 25.0% |
| !!! | AGAGATTTTTTTGGTCATAA+GGG | + | chr4_1:83940779-83940798 | Msa0579270:CDS | 25.0% |
| ! | ACAACTATGTTTAAGAAATC+AGG | + | chr4_1:83941115-83941134 | Msa0579270:CDS | 25.0% |
| ! | AATGAAGAAATCTATGAGAA+TGG | + | chr4_1:83941223-83941242 | Msa0579270:CDS | 25.0% |
| !!! | TGAGTTTTTTGGTTATGAAA+AGG | + | chr4_1:83941264-83941283 | Msa0579270:CDS | 25.0% |
| ! | AAAGAAATTATCAAGCAACA+AGG | + | chr4_1:83941399-83941418 | Msa0579270:CDS | 25.0% |
| ! | AAGAAATTATCAAGCAACAA+GGG | + | chr4_1:83941400-83941419 | Msa0579270:CDS | 25.0% |
| !! | CTGAAAATTTTGTAGCAAAT+TGG | - | chr4_1:83941475-83941494 | None:intergenic | 25.0% |
| !!! | CAATTTGCTACAAAATTTTC+AGG | + | chr4_1:83941473-83941492 | Msa0579270:CDS | 25.0% |
| !! | CATAAAAGATCACATTTTGT+TGG | + | chr4_1:83941517-83941536 | Msa0579270:CDS | 25.0% |
| !! | ATCAAATTTTGCAAAGAATG+TGG | + | chr4_1:83940449-83940468 | Msa0579270:CDS | 25.0% |
| !! | TCAAATTTTGCAAAGAATGT+GGG | + | chr4_1:83940450-83940469 | Msa0579270:CDS | 25.0% |
| !!! | TTGTTGTCTAGAGATTTTTT+TGG | + | chr4_1:83940770-83940789 | Msa0579270:CDS | 25.0% |
| !!! | TAGAGATTTTTTTGGTCATA+AGG | + | chr4_1:83940778-83940797 | Msa0579270:CDS | 25.0% |
| !!! | AGAGATTTTTTTGGTCATAA+GGG | + | chr4_1:83940779-83940798 | Msa0579270:CDS | 25.0% |
| ! | ACAACTATGTTTAAGAAATC+AGG | + | chr4_1:83941115-83941134 | Msa0579270:CDS | 25.0% |
| ! | AATGAAGAAATCTATGAGAA+TGG | + | chr4_1:83941223-83941242 | Msa0579270:CDS | 25.0% |
| !!! | TGAGTTTTTTGGTTATGAAA+AGG | + | chr4_1:83941264-83941283 | Msa0579270:CDS | 25.0% |
| ! | AAAGAAATTATCAAGCAACA+AGG | + | chr4_1:83941399-83941418 | Msa0579270:CDS | 25.0% |
| ! | AAGAAATTATCAAGCAACAA+GGG | + | chr4_1:83941400-83941419 | Msa0579270:CDS | 25.0% |
| !! | CTGAAAATTTTGTAGCAAAT+TGG | - | chr4_1:83941475-83941494 | None:intergenic | 25.0% |
| !!! | CAATTTGCTACAAAATTTTC+AGG | + | chr4_1:83941473-83941492 | Msa0579270:CDS | 25.0% |
| !! | CATAAAAGATCACATTTTGT+TGG | + | chr4_1:83941517-83941536 | Msa0579270:CDS | 25.0% |
| TATGCAAATATTGCTTCAAG+AGG | + | chr4_1:83940144-83940163 | Msa0579270:CDS | 30.0% | |
| TTTCTCTTAGACCATAAATG+AGG | - | chr4_1:83940325-83940344 | None:intergenic | 30.0% | |
| AAAATCCCAAGAAAACAATG+AGG | + | chr4_1:83940342-83940361 | Msa0579270:CDS | 30.0% | |
| ! | ACAAACCTCATTGTTTTCTT+GGG | - | chr4_1:83940350-83940369 | None:intergenic | 30.0% |
| ! | TACAAACCTCATTGTTTTCT+TGG | - | chr4_1:83940351-83940370 | None:intergenic | 30.0% |
| ! | CATTTCATTTTGTTCCAATG+TGG | - | chr4_1:83940429-83940448 | None:intergenic | 30.0% |
| ATCTAAGGAAATCTAAGAGA+AGG | + | chr4_1:83940624-83940643 | Msa0579270:CDS | 30.0% | |
| TCGAAGATTGTTATCAGAAA+TGG | + | chr4_1:83940857-83940876 | Msa0579270:CDS | 30.0% | |
| !! | GATCGGTGTTTTGAATAATT+CGG | + | chr4_1:83940952-83940971 | Msa0579270:CDS | 30.0% |
| ! | TTTTGAATAATTCGGATTCG+AGG | + | chr4_1:83940960-83940979 | Msa0579270:CDS | 30.0% |
| TTTGAATAATTCGGATTCGA+GGG | + | chr4_1:83940961-83940980 | Msa0579270:CDS | 30.0% | |
| TTTCAAGCTATGAATTCAAG+AGG | + | chr4_1:83941029-83941048 | Msa0579270:CDS | 30.0% | |
| AGAAAGAAAGCAAACTTTGA+AGG | + | chr4_1:83941181-83941200 | Msa0579270:CDS | 30.0% | |
| ! | AAAAGATCACATTTTGTTGG+AGG | + | chr4_1:83941520-83941539 | Msa0579270:CDS | 30.0% |
| AGATTGAGATCAATCAAACA+AGG | - | chr4_1:83941595-83941614 | None:intergenic | 30.0% | |
| TATGCAAATATTGCTTCAAG+AGG | + | chr4_1:83940144-83940163 | Msa0579270:CDS | 30.0% | |
| TTTCTCTTAGACCATAAATG+AGG | - | chr4_1:83940325-83940344 | None:intergenic | 30.0% | |
| AAAATCCCAAGAAAACAATG+AGG | + | chr4_1:83940342-83940361 | Msa0579270:CDS | 30.0% | |
| ! | ACAAACCTCATTGTTTTCTT+GGG | - | chr4_1:83940350-83940369 | None:intergenic | 30.0% |
| ! | TACAAACCTCATTGTTTTCT+TGG | - | chr4_1:83940351-83940370 | None:intergenic | 30.0% |
| ! | CATTTCATTTTGTTCCAATG+TGG | - | chr4_1:83940429-83940448 | None:intergenic | 30.0% |
| ATCTAAGGAAATCTAAGAGA+AGG | + | chr4_1:83940624-83940643 | Msa0579270:CDS | 30.0% | |
| TCGAAGATTGTTATCAGAAA+TGG | + | chr4_1:83940857-83940876 | Msa0579270:CDS | 30.0% | |
| !! | GATCGGTGTTTTGAATAATT+CGG | + | chr4_1:83940952-83940971 | Msa0579270:CDS | 30.0% |
| ! | TTTTGAATAATTCGGATTCG+AGG | + | chr4_1:83940960-83940979 | Msa0579270:CDS | 30.0% |
| TTTGAATAATTCGGATTCGA+GGG | + | chr4_1:83940961-83940980 | Msa0579270:CDS | 30.0% | |
| TTTCAAGCTATGAATTCAAG+AGG | + | chr4_1:83941029-83941048 | Msa0579270:CDS | 30.0% | |
| AGAAAGAAAGCAAACTTTGA+AGG | + | chr4_1:83941181-83941200 | Msa0579270:CDS | 30.0% | |
| ! | AAAAGATCACATTTTGTTGG+AGG | + | chr4_1:83941520-83941539 | Msa0579270:CDS | 30.0% |
| AGATTGAGATCAATCAAACA+AGG | - | chr4_1:83941595-83941614 | None:intergenic | 30.0% | |
| ! | TTTTGCAAAGAATGTGGGAA+AGG | + | chr4_1:83940455-83940474 | Msa0579270:CDS | 35.0% |
| GAAAGAGAAGAAGATCAACA+AGG | + | chr4_1:83940526-83940545 | Msa0579270:CDS | 35.0% | |
| CTGCTACAACAATGAATCTA+AGG | + | chr4_1:83940609-83940628 | Msa0579270:CDS | 35.0% | |
| GGAAATCTAAGAGAAGGATT+AGG | + | chr4_1:83940630-83940649 | Msa0579270:CDS | 35.0% | |
| CCATTAACAGAAGAAGAAGA+AGG | - | chr4_1:83940686-83940705 | None:intergenic | 35.0% | |
| CCTTCTTCTTCTTCTGTTAA+TGG | + | chr4_1:83940683-83940702 | Msa0579270:CDS | 35.0% | |
| TCTTCTTCTTCTGTTAATGG+TGG | + | chr4_1:83940686-83940705 | Msa0579270:CDS | 35.0% | |
| !! | TTCTTCATCTGTTTCTGAGA+TGG | + | chr4_1:83940709-83940728 | Msa0579270:CDS | 35.0% |
| AACAACAAGAAGAAGTTGCT+AGG | + | chr4_1:83940738-83940757 | Msa0579270:CDS | 35.0% | |
| AGCAGATAAATCTGGATTTG+AGG | + | chr4_1:83941063-83941082 | Msa0579270:CDS | 35.0% | |
| GTTTAAGAAATCAGGTACGA+TGG | + | chr4_1:83941123-83941142 | Msa0579270:CDS | 35.0% | |
| CTTTCTATTCACAGCTTTAC+TGG | - | chr4_1:83941383-83941402 | None:intergenic | 35.0% | |
| !!! | TGCTACAAAATTTTCAGGTC+AGG | + | chr4_1:83941478-83941497 | Msa0579270:CDS | 35.0% |
| ! | TTTTGCAAAGAATGTGGGAA+AGG | + | chr4_1:83940455-83940474 | Msa0579270:CDS | 35.0% |
| GAAAGAGAAGAAGATCAACA+AGG | + | chr4_1:83940526-83940545 | Msa0579270:CDS | 35.0% | |
| CTGCTACAACAATGAATCTA+AGG | + | chr4_1:83940609-83940628 | Msa0579270:CDS | 35.0% | |
| GGAAATCTAAGAGAAGGATT+AGG | + | chr4_1:83940630-83940649 | Msa0579270:CDS | 35.0% | |
| CCATTAACAGAAGAAGAAGA+AGG | - | chr4_1:83940686-83940705 | None:intergenic | 35.0% | |
| CCTTCTTCTTCTTCTGTTAA+TGG | + | chr4_1:83940683-83940702 | Msa0579270:CDS | 35.0% | |
| TCTTCTTCTTCTGTTAATGG+TGG | + | chr4_1:83940686-83940705 | Msa0579270:CDS | 35.0% | |
| !! | TTCTTCATCTGTTTCTGAGA+TGG | + | chr4_1:83940709-83940728 | Msa0579270:CDS | 35.0% |
| AACAACAAGAAGAAGTTGCT+AGG | + | chr4_1:83940738-83940757 | Msa0579270:CDS | 35.0% | |
| AGCAGATAAATCTGGATTTG+AGG | + | chr4_1:83941063-83941082 | Msa0579270:CDS | 35.0% | |
| GTTTAAGAAATCAGGTACGA+TGG | + | chr4_1:83941123-83941142 | Msa0579270:CDS | 35.0% | |
| CTTTCTATTCACAGCTTTAC+TGG | - | chr4_1:83941383-83941402 | None:intergenic | 35.0% | |
| !!! | TGCTACAAAATTTTCAGGTC+AGG | + | chr4_1:83941478-83941497 | Msa0579270:CDS | 35.0% |
| !! | GATGGTGGAAACCTCATTTA+TGG | + | chr4_1:83940311-83940330 | Msa0579270:CDS | 40.0% |
| ! | CCACAAAGTGCTTTCAATGA+AGG | - | chr4_1:83940485-83940504 | None:intergenic | 40.0% |
| !! | CCTTCATTGAAAGCACTTTG+TGG | + | chr4_1:83940482-83940501 | Msa0579270:CDS | 40.0% |
| GAAGATCAACAAGGCTATGA+TGG | + | chr4_1:83940535-83940554 | Msa0579270:CDS | 40.0% | |
| !! | ATCTGTTTCTGAGATGGAAC+AGG | + | chr4_1:83940715-83940734 | Msa0579270:CDS | 40.0% |
| !! | TAATGCTCGTGAGTTTGTTG+CGG | + | chr4_1:83940898-83940917 | Msa0579270:CDS | 40.0% |
| GAAGAAGAAGAAGCTGAAGA+TGG | + | chr4_1:83940925-83940944 | Msa0579270:CDS | 40.0% | |
| AAGAAGAAGCTGAAGATGGT+TGG | + | chr4_1:83940929-83940948 | Msa0579270:CDS | 40.0% | |
| AGAAGAAGCTGAAGATGGTT+GGG | + | chr4_1:83940930-83940949 | Msa0579270:CDS | 40.0% | |
| GATTCGAGGGATTTCAGATA+TGG | + | chr4_1:83940974-83940993 | Msa0579270:CDS | 40.0% | |
| CTATGAATTCAAGAGGCCTA+AGG | + | chr4_1:83941036-83941055 | Msa0579270:CDS | 40.0% | |
| GATTTATCTGCTTCCACCTT+AGG | - | chr4_1:83941055-83941074 | None:intergenic | 40.0% | |
| AAGGTGGAAGCAGATAAATC+TGG | + | chr4_1:83941055-83941074 | Msa0579270:CDS | 40.0% | |
| GAAATCAGGTACGATGGATA+AGG | + | chr4_1:83941129-83941148 | Msa0579270:CDS | 40.0% | |
| AGGTACGATGGATAAGGATT+TGG | + | chr4_1:83941135-83941154 | Msa0579270:CDS | 40.0% | |
| !! | GATGGTGGAAACCTCATTTA+TGG | + | chr4_1:83940311-83940330 | Msa0579270:CDS | 40.0% |
| ! | CCACAAAGTGCTTTCAATGA+AGG | - | chr4_1:83940485-83940504 | None:intergenic | 40.0% |
| !! | CCTTCATTGAAAGCACTTTG+TGG | + | chr4_1:83940482-83940501 | Msa0579270:CDS | 40.0% |
| GAAGATCAACAAGGCTATGA+TGG | + | chr4_1:83940535-83940554 | Msa0579270:CDS | 40.0% | |
| !! | ATCTGTTTCTGAGATGGAAC+AGG | + | chr4_1:83940715-83940734 | Msa0579270:CDS | 40.0% |
| !! | TAATGCTCGTGAGTTTGTTG+CGG | + | chr4_1:83940898-83940917 | Msa0579270:CDS | 40.0% |
| GAAGAAGAAGAAGCTGAAGA+TGG | + | chr4_1:83940925-83940944 | Msa0579270:CDS | 40.0% | |
| AAGAAGAAGCTGAAGATGGT+TGG | + | chr4_1:83940929-83940948 | Msa0579270:CDS | 40.0% | |
| AGAAGAAGCTGAAGATGGTT+GGG | + | chr4_1:83940930-83940949 | Msa0579270:CDS | 40.0% | |
| GATTCGAGGGATTTCAGATA+TGG | + | chr4_1:83940974-83940993 | Msa0579270:CDS | 40.0% | |
| CTATGAATTCAAGAGGCCTA+AGG | + | chr4_1:83941036-83941055 | Msa0579270:CDS | 40.0% | |
| GATTTATCTGCTTCCACCTT+AGG | - | chr4_1:83941055-83941074 | None:intergenic | 40.0% | |
| AAGGTGGAAGCAGATAAATC+TGG | + | chr4_1:83941055-83941074 | Msa0579270:CDS | 40.0% | |
| GAAATCAGGTACGATGGATA+AGG | + | chr4_1:83941129-83941148 | Msa0579270:CDS | 40.0% | |
| AGGTACGATGGATAAGGATT+TGG | + | chr4_1:83941135-83941154 | Msa0579270:CDS | 40.0% | |
| TGCTTCAAGAGGTTTCCTTG+TGG | + | chr4_1:83940155-83940174 | Msa0579270:CDS | 45.0% | |
| GCTTCAAGAGGTTTCCTTGT+GGG | + | chr4_1:83940156-83940175 | Msa0579270:CDS | 45.0% | |
| TTTCCTTGTGGGAAGTCTCT+TGG | + | chr4_1:83940167-83940186 | Msa0579270:CDS | 45.0% | |
| !! | GAAAGCACTTTGTGGTCACA+TGG | + | chr4_1:83940490-83940509 | Msa0579270:CDS | 45.0% |
| GATCAACAAGGCTATGATGG+AGG | + | chr4_1:83940538-83940557 | Msa0579270:CDS | 45.0% | |
| AAGCTGAAGATGGTTGGGAT+CGG | + | chr4_1:83940935-83940954 | Msa0579270:CDS | 45.0% | |
| TGAATTCAAGAGGCCTAAGG+TGG | + | chr4_1:83941039-83941058 | Msa0579270:CDS | 45.0% | |
| ! | CTGGTATGAGATTTTGCAGC+AGG | - | chr4_1:83941364-83941383 | None:intergenic | 45.0% |
| TTCAGGTCAGGACAAGCATT+AGG | + | chr4_1:83941490-83941509 | Msa0579270:CDS | 45.0% | |
| TGCTTCAAGAGGTTTCCTTG+TGG | + | chr4_1:83940155-83940174 | Msa0579270:CDS | 45.0% | |
| GCTTCAAGAGGTTTCCTTGT+GGG | + | chr4_1:83940156-83940175 | Msa0579270:CDS | 45.0% | |
| TTTCCTTGTGGGAAGTCTCT+TGG | + | chr4_1:83940167-83940186 | Msa0579270:CDS | 45.0% | |
| !! | GAAAGCACTTTGTGGTCACA+TGG | + | chr4_1:83940490-83940509 | Msa0579270:CDS | 45.0% |
| GATCAACAAGGCTATGATGG+AGG | + | chr4_1:83940538-83940557 | Msa0579270:CDS | 45.0% | |
| AAGCTGAAGATGGTTGGGAT+CGG | + | chr4_1:83940935-83940954 | Msa0579270:CDS | 45.0% | |
| TGAATTCAAGAGGCCTAAGG+TGG | + | chr4_1:83941039-83941058 | Msa0579270:CDS | 45.0% | |
| ! | CTGGTATGAGATTTTGCAGC+AGG | - | chr4_1:83941364-83941383 | None:intergenic | 45.0% |
| TTCAGGTCAGGACAAGCATT+AGG | + | chr4_1:83941490-83941509 | Msa0579270:CDS | 45.0% | |
| TGCTACTGCTGCAACCACAT+TGG | + | chr4_1:83940412-83940431 | Msa0579270:CDS | 50.0% | |
| ! | CAACAAGGCTATGATGGAGG+AGG | + | chr4_1:83940541-83940560 | Msa0579270:CDS | 50.0% |
| AGGTCAGGACAAGCATTAGG+AGG | + | chr4_1:83941493-83941512 | Msa0579270:CDS | 50.0% | |
| TGCTACTGCTGCAACCACAT+TGG | + | chr4_1:83940412-83940431 | Msa0579270:CDS | 50.0% | |
| ! | CAACAAGGCTATGATGGAGG+AGG | + | chr4_1:83940541-83940560 | Msa0579270:CDS | 50.0% |
| AGGTCAGGACAAGCATTAGG+AGG | + | chr4_1:83941493-83941512 | Msa0579270:CDS | 50.0% | |
| CCACCAAGAGACTTCCCACA+AGG | - | chr4_1:83940173-83940192 | None:intergenic | 55.0% | |
| CCTTGTGGGAAGTCTCTTGG+TGG | + | chr4_1:83940170-83940189 | Msa0579270:CDS | 55.0% | |
| GTTTCCACCATCACCAGCAC+CGG | - | chr4_1:83940303-83940322 | None:intergenic | 55.0% | |
| CCACCAAGAGACTTCCCACA+AGG | - | chr4_1:83940173-83940192 | None:intergenic | 55.0% | |
| CCTTGTGGGAAGTCTCTTGG+TGG | + | chr4_1:83940170-83940189 | Msa0579270:CDS | 55.0% | |
| GTTTCCACCATCACCAGCAC+CGG | - | chr4_1:83940303-83940322 | None:intergenic | 55.0% | |
| ATTGCTGCTGCTGCTGCTGC+TGG | + | chr4_1:83940239-83940258 | Msa0579270:CDS | 60.0% | |
| GCTGCTGAGCATGTTGCTGC+TGG | + | chr4_1:83940266-83940285 | Msa0579270:CDS | 60.0% | |
| GCTGAGCATGTTGCTGCTGG+TGG | + | chr4_1:83940269-83940288 | Msa0579270:CDS | 60.0% | |
| ! | CATGTTGCTGCTGGTGGTGC+CGG | + | chr4_1:83940275-83940294 | Msa0579270:CDS | 60.0% |
| ATTGCTGCTGCTGCTGCTGC+TGG | + | chr4_1:83940239-83940258 | Msa0579270:CDS | 60.0% | |
| GCTGCTGAGCATGTTGCTGC+TGG | + | chr4_1:83940266-83940285 | Msa0579270:CDS | 60.0% | |
| GCTGAGCATGTTGCTGCTGG+TGG | + | chr4_1:83940269-83940288 | Msa0579270:CDS | 60.0% | |
| ! | CATGTTGCTGCTGGTGGTGC+CGG | + | chr4_1:83940275-83940294 | Msa0579270:CDS | 60.0% |
| !! | ACCATCACCAGCACCGGCAC+CGG | - | chr4_1:83940297-83940316 | None:intergenic | 65.0% |
| !! | ACCATCACCAGCACCGGCAC+CGG | - | chr4_1:83940297-83940316 | None:intergenic | 65.0% |
| !! | GGTGCCGGTGCTGGTGATGG+TGG | + | chr4_1:83940296-83940315 | Msa0579270:CDS | 70.0% |
| !! | GGTGCCGGTGCTGGTGATGG+TGG | + | chr4_1:83940296-83940315 | Msa0579270:CDS | 70.0% |
| !! | GCTGCTGGTGGTGCCGGTGC+CGG | + | chr4_1:83940281-83940300 | Msa0579270:CDS | 75.0% |
| !! | GCCGGTGCCGGTGCTGGTGA+TGG | + | chr4_1:83940293-83940312 | Msa0579270:CDS | 75.0% |
| !! | GCTGCTGGTGGTGCCGGTGC+CGG | + | chr4_1:83940281-83940300 | Msa0579270:CDS | 75.0% |
| !! | GCCGGTGCCGGTGCTGGTGA+TGG | + | chr4_1:83940293-83940312 | Msa0579270:CDS | 75.0% |
| !!! | GGTGGTGCCGGTGCCGGTGC+TGG | + | chr4_1:83940287-83940306 | Msa0579270:CDS | 80.0% |
| !!! | GGTGGTGCCGGTGCCGGTGC+TGG | + | chr4_1:83940287-83940306 | Msa0579270:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83940119 | 83941636 | 83940119 | ID=Msa0579270;Name=Msa0579270 |
| chr4_1 | mRNA | 83940119 | 83941636 | 83940119 | ID=Msa0579270-mRNA-1;Parent=Msa0579270;Name=Msa0579270-mRNA-1;_AED=0.00;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|505 |
| chr4_1 | exon | 83940119 | 83941636 | 83940119 | ID=Msa0579270-mRNA-1:exon:30689;Parent=Msa0579270-mRNA-1 |
| chr4_1 | CDS | 83940119 | 83941636 | 83940119 | ID=Msa0579270-mRNA-1:cds;Parent=Msa0579270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
