Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579410 | XP_039688901.1 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579410 | sp|Q39092|ZAT1_ARATH | 55.000 | 60 | 21 | 2 | 446 | 505 | 206 | 259 | 6.77e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579410 | A0A396I8U1 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0579410 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579270 | Msa0579410 | 0.939265 | 1.698457e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579410 | MtrunA17_Chr4g0043071 | 91.732 | 508 | 29 | 7 | 1 | 505 | 1 | 498 | 0.0 | 731 |
| Msa0579410 | MtrunA17_Chr5g0418821 | 44.425 | 565 | 191 | 25 | 9 | 505 | 5 | 514 | 1.45e-87 | 278 |
| Msa0579410 | MtrunA17_Chr4g0061301 | 30.952 | 546 | 265 | 24 | 7 | 505 | 10 | 490 | 9.77e-51 | 181 |
| Msa0579410 | MtrunA17_Chr3g0086331 | 32.314 | 229 | 117 | 7 | 7 | 225 | 37 | 237 | 1.31e-16 | 82.4 |
| Msa0579410 | MtrunA17_Chr7g0231181 | 50.847 | 59 | 28 | 1 | 447 | 505 | 284 | 341 | 5.74e-14 | 73.6 |
| Msa0579410 | MtrunA17_Chr4g0056091 | 48.387 | 62 | 29 | 1 | 447 | 505 | 244 | 305 | 3.12e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579410 | AT1G26610.1 | 37.996 | 529 | 230 | 23 | 1 | 505 | 1 | 455 | 1.89e-73 | 240 |
| Msa0579410 | AT1G26590.4 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579410 | AT1G26590.3 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579410 | AT1G26590.1 | 29.528 | 508 | 199 | 21 | 1 | 501 | 1 | 356 | 3.98e-25 | 107 |
| Msa0579410 | AT1G26590.2 | 29.528 | 508 | 199 | 21 | 1 | 501 | 19 | 374 | 6.87e-25 | 106 |
| Msa0579410 | AT1G02030.1 | 55.000 | 60 | 21 | 2 | 446 | 505 | 206 | 259 | 6.88e-12 | 66.2 |
| Msa0579410 | AT3G60580.1 | 52.632 | 57 | 27 | 0 | 449 | 505 | 224 | 280 | 1.32e-11 | 65.9 |
Find 65 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCTTCTTCTGTTAA+TGG | 0.176069 | 4_1:-84065208 | Msa0579410:CDS |
| CTTTCTATTCACAGCTTTAC+TGG | 0.265058 | 4_1:+84064511 | None:intergenic |
| CCTGCTCCTGTTGATGAATA+AGG | 0.266269 | 4_1:-84064275 | None:intergenic |
| GATGGTGGAAACCTCATTTA+TGG | 0.318116 | 4_1:-84065580 | Msa0579410:CDS |
| CTGCTACAACAATGAATCTA+AGG | 0.340412 | 4_1:-84065282 | Msa0579410:CDS |
| GATTCGAGGGATTTCAGATA+TGG | 0.370754 | 4_1:-84064917 | Msa0579410:CDS |
| TTTCCTTGTGGGAAGTCTCT+TGG | 0.374186 | 4_1:-84065724 | Msa0579410:CDS |
| TCGAAGATTGTTATCAGAAA+TGG | 0.375407 | 4_1:-84065034 | Msa0579410:CDS |
| ATCTGTTTCTGAGATGGAAC+AGG | 0.383756 | 4_1:-84065176 | Msa0579410:CDS |
| CTTCCTATGTTTCTCTTCCA+TGG | 0.384515 | 4_1:+84065774 | None:intergenic |
| CCTTCATTGAAAGCACTTTG+TGG | 0.392261 | 4_1:-84065409 | Msa0579410:CDS |
| CATGTTGCTGCTGGTGGTGC+CGG | 0.395565 | 4_1:-84065616 | Msa0579410:CDS |
| AGGTACGATGGATAAGGATT+TGG | 0.397075 | 4_1:-84064756 | Msa0579410:CDS |
| GCTGCTGAGCATGTTGCTGC+TGG | 0.397482 | 4_1:-84065625 | Msa0579410:CDS |
| AGAAAGAAAGCAAACTTTGA+AGG | 0.397607 | 4_1:-84064710 | Msa0579410:CDS |
| GATTTATCTGCTTCCACCTT+AGG | 0.403922 | 4_1:+84064839 | None:intergenic |
| TTCAGGTCAGGACAAGCATT+AGG | 0.413798 | 4_1:-84064401 | Msa0579410:CDS |
| GGTGGTGCCGGTGCCGGTGC+TGG | 0.421213 | 4_1:-84065604 | Msa0579410:CDS |
| TTCTTCATCTGTTTCTGAGA+TGG | 0.422661 | 4_1:-84065182 | Msa0579410:CDS |
| ACAACTATGTTTAAGAAATC+AGG | 0.422976 | 4_1:-84064776 | Msa0579410:CDS |
| GCTGCTGGTGGTGCCGGTGC+CGG | 0.427491 | 4_1:-84065610 | Msa0579410:CDS |
| GGAAATCTAAGAGAAGGATT+AGG | 0.438686 | 4_1:-84065261 | Msa0579410:CDS |
| GCCGGTGCCGGTGCTGGTGA+TGG | 0.439012 | 4_1:-84065598 | Msa0579410:CDS |
| CCTTGTGGGAAGTCTCTTGG+TGG | 0.447606 | 4_1:-84065721 | Msa0579410:CDS |
| GCTTCAAGAGGTTTCCTTGT+GGG | 0.455991 | 4_1:-84065735 | Msa0579410:CDS |
| GAAGATCAACAAGGCTATGA+TGG | 0.459880 | 4_1:-84065356 | Msa0579410:CDS |
| AAGAAGAAGCTGAAGATGGT+TGG | 0.469191 | 4_1:-84064962 | Msa0579410:CDS |
| AGAAGAAGCTGAAGATGGTT+GGG | 0.477085 | 4_1:-84064961 | Msa0579410:CDS |
| GAAATCAGGTACGATGGATA+AGG | 0.482279 | 4_1:-84064762 | Msa0579410:CDS |
| CCTTATTCATCAACAGGAGC+AGG | 0.483736 | 4_1:+84064275 | None:intergenic |
| GCTGAGCATGTTGCTGCTGG+TGG | 0.495499 | 4_1:-84065622 | Msa0579410:CDS |
| AATGAAGAAATCTATGAGAA+TGG | 0.504427 | 4_1:-84064668 | Msa0579410:CDS |
| GAAGAAGAAGAAGCTGAAGA+TGG | 0.505492 | 4_1:-84064966 | Msa0579410:CDS |
| CCACAAAGTGCTTTCAATGA+AGG | 0.507655 | 4_1:+84065409 | None:intergenic |
| AGCAGATAAATCTGGATTTG+AGG | 0.507748 | 4_1:-84064828 | Msa0579410:CDS |
| AAGGTGGAAGCAGATAAATC+TGG | 0.519283 | 4_1:-84064836 | Msa0579410:CDS |
| TTTCTCTTAGACCATAAATG+AGG | 0.525256 | 4_1:+84065569 | None:intergenic |
| TCTTCTTCTTCTGTTAATGG+TGG | 0.530303 | 4_1:-84065205 | Msa0579410:CDS |
| TATGCAAATATTGCTTCAAG+AGG | 0.533843 | 4_1:-84065747 | Msa0579410:CDS |
| GTTTCCACCATCACCAGCAC+CGG | 0.547595 | 4_1:+84065591 | None:intergenic |
| GAAAGCACTTTGTGGTCACA+TGG | 0.555106 | 4_1:-84065401 | Msa0579410:CDS |
| GGTGCCGGTGCTGGTGATGG+TGG | 0.560885 | 4_1:-84065595 | Msa0579410:CDS |
| TTTGAATAATTCGGATTCGA+GGG | 0.562179 | 4_1:-84064930 | Msa0579410:CDS |
| ACCATCACCAGCACCGGCAC+CGG | 0.565694 | 4_1:+84065597 | None:intergenic |
| AAACCATGGAAGAGAAACAT+AGG | 0.566286 | 4_1:-84065777 | None:intergenic |
| TTTCAAGCTATGAATTCAAG+AGG | 0.573385 | 4_1:-84064862 | Msa0579410:CDS |
| CAACAAGGCTATGATGGAGG+AGG | 0.578283 | 4_1:-84065350 | Msa0579410:CDS |
| ATCTAAGGAAATCTAAGAGA+AGG | 0.581198 | 4_1:-84065267 | Msa0579410:CDS |
| CTATGAATTCAAGAGGCCTA+AGG | 0.586326 | 4_1:-84064855 | Msa0579410:CDS |
| TAATGCTCGTGAGTTTGTTG+CGG | 0.608198 | 4_1:-84064993 | Msa0579410:CDS |
| TGAATTCAAGAGGCCTAAGG+TGG | 0.609568 | 4_1:-84064852 | Msa0579410:CDS |
| AGGTCAGGACAAGCATTAGG+AGG | 0.611093 | 4_1:-84064398 | Msa0579410:CDS |
| AAGAAATTATCAAGCAACAA+GGG | 0.615423 | 4_1:-84064491 | Msa0579410:CDS |
| TGCTACTGCTGCAACCACAT+TGG | 0.618871 | 4_1:-84065479 | Msa0579410:CDS |
| AAGCTGAAGATGGTTGGGAT+CGG | 0.620650 | 4_1:-84064956 | Msa0579410:CDS |
| CCATTAACAGAAGAAGAAGA+AGG | 0.621252 | 4_1:+84065208 | None:intergenic |
| GTTTAAGAAATCAGGTACGA+TGG | 0.632267 | 4_1:-84064768 | Msa0579410:CDS |
| AACAACAAGAAGAAGTTGCT+AGG | 0.632715 | 4_1:-84065153 | Msa0579410:CDS |
| AAAGAAATTATCAAGCAACA+AGG | 0.646880 | 4_1:-84064492 | Msa0579410:CDS |
| TGCTTCAAGAGGTTTCCTTG+TGG | 0.652030 | 4_1:-84065736 | Msa0579410:CDS |
| GATCAACAAGGCTATGATGG+AGG | 0.660663 | 4_1:-84065353 | Msa0579410:CDS |
| CCACCAAGAGACTTCCCACA+AGG | 0.666617 | 4_1:+84065721 | None:intergenic |
| AAAATCCCAAGAAAACAATG+AGG | 0.685206 | 4_1:-84065549 | Msa0579410:CDS |
| AGATTGAGATCAATCAAACA+AGG | 0.701265 | 4_1:+84064299 | None:intergenic |
| GAAAGAGAAGAAGATCAACA+AGG | 0.702925 | 4_1:-84065365 | Msa0579410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATGAAATATGAGTTTTT+TGG | - | chr4_1:84065411-84065430 | Msa0579410:CDS | 20.0% |
| !!! | AGTATGAAATATGAGTTTTT+TGG | - | chr4_1:84065411-84065430 | Msa0579410:CDS | 20.0% |
| !! | ATCAAATTTTGCAAAGAATG+TGG | - | chr4_1:84064607-84064626 | Msa0579410:CDS | 25.0% |
| !! | TCAAATTTTGCAAAGAATGT+GGG | - | chr4_1:84064608-84064627 | Msa0579410:CDS | 25.0% |
| !!! | TTGTTGTCTAGAGATTTTTT+TGG | - | chr4_1:84064928-84064947 | Msa0579410:CDS | 25.0% |
| !!! | TAGAGATTTTTTTGGTCATA+AGG | - | chr4_1:84064936-84064955 | Msa0579410:CDS | 25.0% |
| !!! | AGAGATTTTTTTGGTCATAA+GGG | - | chr4_1:84064937-84064956 | Msa0579410:CDS | 25.0% |
| ! | ACAACTATGTTTAAGAAATC+AGG | - | chr4_1:84065273-84065292 | Msa0579410:CDS | 25.0% |
| ! | AATGAAGAAATCTATGAGAA+TGG | - | chr4_1:84065381-84065400 | Msa0579410:CDS | 25.0% |
| !!! | TGAGTTTTTTGGTTATGAAA+AGG | - | chr4_1:84065422-84065441 | Msa0579410:CDS | 25.0% |
| ! | AAAGAAATTATCAAGCAACA+AGG | - | chr4_1:84065557-84065576 | Msa0579410:CDS | 25.0% |
| ! | AAGAAATTATCAAGCAACAA+GGG | - | chr4_1:84065558-84065577 | Msa0579410:CDS | 25.0% |
| !! | CTGAAAATTTTGTAGCAAAT+TGG | + | chr4_1:84065633-84065652 | None:intergenic | 25.0% |
| !!! | CAATTTGCTACAAAATTTTC+AGG | - | chr4_1:84065631-84065650 | Msa0579410:CDS | 25.0% |
| !! | CATAAAAGATCACATTTTGT+TGG | - | chr4_1:84065675-84065694 | Msa0579410:CDS | 25.0% |
| !! | ATCAAATTTTGCAAAGAATG+TGG | - | chr4_1:84064607-84064626 | Msa0579410:CDS | 25.0% |
| !! | TCAAATTTTGCAAAGAATGT+GGG | - | chr4_1:84064608-84064627 | Msa0579410:CDS | 25.0% |
| !!! | TTGTTGTCTAGAGATTTTTT+TGG | - | chr4_1:84064928-84064947 | Msa0579410:CDS | 25.0% |
| !!! | TAGAGATTTTTTTGGTCATA+AGG | - | chr4_1:84064936-84064955 | Msa0579410:CDS | 25.0% |
| !!! | AGAGATTTTTTTGGTCATAA+GGG | - | chr4_1:84064937-84064956 | Msa0579410:CDS | 25.0% |
| ! | ACAACTATGTTTAAGAAATC+AGG | - | chr4_1:84065273-84065292 | Msa0579410:CDS | 25.0% |
| ! | AATGAAGAAATCTATGAGAA+TGG | - | chr4_1:84065381-84065400 | Msa0579410:CDS | 25.0% |
| !!! | TGAGTTTTTTGGTTATGAAA+AGG | - | chr4_1:84065422-84065441 | Msa0579410:CDS | 25.0% |
| ! | AAAGAAATTATCAAGCAACA+AGG | - | chr4_1:84065557-84065576 | Msa0579410:CDS | 25.0% |
| ! | AAGAAATTATCAAGCAACAA+GGG | - | chr4_1:84065558-84065577 | Msa0579410:CDS | 25.0% |
| !! | CTGAAAATTTTGTAGCAAAT+TGG | + | chr4_1:84065633-84065652 | None:intergenic | 25.0% |
| !!! | CAATTTGCTACAAAATTTTC+AGG | - | chr4_1:84065631-84065650 | Msa0579410:CDS | 25.0% |
| !! | CATAAAAGATCACATTTTGT+TGG | - | chr4_1:84065675-84065694 | Msa0579410:CDS | 25.0% |
| TATGCAAATATTGCTTCAAG+AGG | - | chr4_1:84064302-84064321 | Msa0579410:CDS | 30.0% | |
| TTTCTCTTAGACCATAAATG+AGG | + | chr4_1:84064483-84064502 | None:intergenic | 30.0% | |
| AAAATCCCAAGAAAACAATG+AGG | - | chr4_1:84064500-84064519 | Msa0579410:CDS | 30.0% | |
| ! | ACAAACCTCATTGTTTTCTT+GGG | + | chr4_1:84064508-84064527 | None:intergenic | 30.0% |
| ! | TACAAACCTCATTGTTTTCT+TGG | + | chr4_1:84064509-84064528 | None:intergenic | 30.0% |
| ! | CATTTCATTTTGTTCCAATG+TGG | + | chr4_1:84064587-84064606 | None:intergenic | 30.0% |
| ATCTAAGGAAATCTAAGAGA+AGG | - | chr4_1:84064782-84064801 | Msa0579410:CDS | 30.0% | |
| TCGAAGATTGTTATCAGAAA+TGG | - | chr4_1:84065015-84065034 | Msa0579410:CDS | 30.0% | |
| !! | GATCGGTGTTTTGAATAATT+CGG | - | chr4_1:84065110-84065129 | Msa0579410:CDS | 30.0% |
| ! | TTTTGAATAATTCGGATTCG+AGG | - | chr4_1:84065118-84065137 | Msa0579410:CDS | 30.0% |
| TTTGAATAATTCGGATTCGA+GGG | - | chr4_1:84065119-84065138 | Msa0579410:CDS | 30.0% | |
| TTTCAAGCTATGAATTCAAG+AGG | - | chr4_1:84065187-84065206 | Msa0579410:CDS | 30.0% | |
| AGAAAGAAAGCAAACTTTGA+AGG | - | chr4_1:84065339-84065358 | Msa0579410:CDS | 30.0% | |
| ! | AAAAGATCACATTTTGTTGG+AGG | - | chr4_1:84065678-84065697 | Msa0579410:CDS | 30.0% |
| AGATTGAGATCAATCAAACA+AGG | + | chr4_1:84065753-84065772 | None:intergenic | 30.0% | |
| TATGCAAATATTGCTTCAAG+AGG | - | chr4_1:84064302-84064321 | Msa0579410:CDS | 30.0% | |
| TTTCTCTTAGACCATAAATG+AGG | + | chr4_1:84064483-84064502 | None:intergenic | 30.0% | |
| AAAATCCCAAGAAAACAATG+AGG | - | chr4_1:84064500-84064519 | Msa0579410:CDS | 30.0% | |
| ! | ACAAACCTCATTGTTTTCTT+GGG | + | chr4_1:84064508-84064527 | None:intergenic | 30.0% |
| ! | TACAAACCTCATTGTTTTCT+TGG | + | chr4_1:84064509-84064528 | None:intergenic | 30.0% |
| ! | CATTTCATTTTGTTCCAATG+TGG | + | chr4_1:84064587-84064606 | None:intergenic | 30.0% |
| ATCTAAGGAAATCTAAGAGA+AGG | - | chr4_1:84064782-84064801 | Msa0579410:CDS | 30.0% | |
| TCGAAGATTGTTATCAGAAA+TGG | - | chr4_1:84065015-84065034 | Msa0579410:CDS | 30.0% | |
| !! | GATCGGTGTTTTGAATAATT+CGG | - | chr4_1:84065110-84065129 | Msa0579410:CDS | 30.0% |
| ! | TTTTGAATAATTCGGATTCG+AGG | - | chr4_1:84065118-84065137 | Msa0579410:CDS | 30.0% |
| TTTGAATAATTCGGATTCGA+GGG | - | chr4_1:84065119-84065138 | Msa0579410:CDS | 30.0% | |
| TTTCAAGCTATGAATTCAAG+AGG | - | chr4_1:84065187-84065206 | Msa0579410:CDS | 30.0% | |
| AGAAAGAAAGCAAACTTTGA+AGG | - | chr4_1:84065339-84065358 | Msa0579410:CDS | 30.0% | |
| ! | AAAAGATCACATTTTGTTGG+AGG | - | chr4_1:84065678-84065697 | Msa0579410:CDS | 30.0% |
| AGATTGAGATCAATCAAACA+AGG | + | chr4_1:84065753-84065772 | None:intergenic | 30.0% | |
| ! | TTTTGCAAAGAATGTGGGAA+AGG | - | chr4_1:84064613-84064632 | Msa0579410:CDS | 35.0% |
| GAAAGAGAAGAAGATCAACA+AGG | - | chr4_1:84064684-84064703 | Msa0579410:CDS | 35.0% | |
| CTGCTACAACAATGAATCTA+AGG | - | chr4_1:84064767-84064786 | Msa0579410:CDS | 35.0% | |
| GGAAATCTAAGAGAAGGATT+AGG | - | chr4_1:84064788-84064807 | Msa0579410:CDS | 35.0% | |
| CCATTAACAGAAGAAGAAGA+AGG | + | chr4_1:84064844-84064863 | None:intergenic | 35.0% | |
| CCTTCTTCTTCTTCTGTTAA+TGG | - | chr4_1:84064841-84064860 | Msa0579410:CDS | 35.0% | |
| TCTTCTTCTTCTGTTAATGG+TGG | - | chr4_1:84064844-84064863 | Msa0579410:CDS | 35.0% | |
| !! | TTCTTCATCTGTTTCTGAGA+TGG | - | chr4_1:84064867-84064886 | Msa0579410:CDS | 35.0% |
| AACAACAAGAAGAAGTTGCT+AGG | - | chr4_1:84064896-84064915 | Msa0579410:CDS | 35.0% | |
| AGCAGATAAATCTGGATTTG+AGG | - | chr4_1:84065221-84065240 | Msa0579410:CDS | 35.0% | |
| GTTTAAGAAATCAGGTACGA+TGG | - | chr4_1:84065281-84065300 | Msa0579410:CDS | 35.0% | |
| CTTTCTATTCACAGCTTTAC+TGG | + | chr4_1:84065541-84065560 | None:intergenic | 35.0% | |
| !!! | TGCTACAAAATTTTCAGGTC+AGG | - | chr4_1:84065636-84065655 | Msa0579410:CDS | 35.0% |
| ! | TTTTGCAAAGAATGTGGGAA+AGG | - | chr4_1:84064613-84064632 | Msa0579410:CDS | 35.0% |
| GAAAGAGAAGAAGATCAACA+AGG | - | chr4_1:84064684-84064703 | Msa0579410:CDS | 35.0% | |
| CTGCTACAACAATGAATCTA+AGG | - | chr4_1:84064767-84064786 | Msa0579410:CDS | 35.0% | |
| GGAAATCTAAGAGAAGGATT+AGG | - | chr4_1:84064788-84064807 | Msa0579410:CDS | 35.0% | |
| CCATTAACAGAAGAAGAAGA+AGG | + | chr4_1:84064844-84064863 | None:intergenic | 35.0% | |
| CCTTCTTCTTCTTCTGTTAA+TGG | - | chr4_1:84064841-84064860 | Msa0579410:CDS | 35.0% | |
| TCTTCTTCTTCTGTTAATGG+TGG | - | chr4_1:84064844-84064863 | Msa0579410:CDS | 35.0% | |
| !! | TTCTTCATCTGTTTCTGAGA+TGG | - | chr4_1:84064867-84064886 | Msa0579410:CDS | 35.0% |
| AACAACAAGAAGAAGTTGCT+AGG | - | chr4_1:84064896-84064915 | Msa0579410:CDS | 35.0% | |
| AGCAGATAAATCTGGATTTG+AGG | - | chr4_1:84065221-84065240 | Msa0579410:CDS | 35.0% | |
| GTTTAAGAAATCAGGTACGA+TGG | - | chr4_1:84065281-84065300 | Msa0579410:CDS | 35.0% | |
| CTTTCTATTCACAGCTTTAC+TGG | + | chr4_1:84065541-84065560 | None:intergenic | 35.0% | |
| !!! | TGCTACAAAATTTTCAGGTC+AGG | - | chr4_1:84065636-84065655 | Msa0579410:CDS | 35.0% |
| !! | GATGGTGGAAACCTCATTTA+TGG | - | chr4_1:84064469-84064488 | Msa0579410:CDS | 40.0% |
| ! | CCACAAAGTGCTTTCAATGA+AGG | + | chr4_1:84064643-84064662 | None:intergenic | 40.0% |
| !! | CCTTCATTGAAAGCACTTTG+TGG | - | chr4_1:84064640-84064659 | Msa0579410:CDS | 40.0% |
| GAAGATCAACAAGGCTATGA+TGG | - | chr4_1:84064693-84064712 | Msa0579410:CDS | 40.0% | |
| !! | ATCTGTTTCTGAGATGGAAC+AGG | - | chr4_1:84064873-84064892 | Msa0579410:CDS | 40.0% |
| !! | TAATGCTCGTGAGTTTGTTG+CGG | - | chr4_1:84065056-84065075 | Msa0579410:CDS | 40.0% |
| GAAGAAGAAGAAGCTGAAGA+TGG | - | chr4_1:84065083-84065102 | Msa0579410:CDS | 40.0% | |
| AAGAAGAAGCTGAAGATGGT+TGG | - | chr4_1:84065087-84065106 | Msa0579410:CDS | 40.0% | |
| AGAAGAAGCTGAAGATGGTT+GGG | - | chr4_1:84065088-84065107 | Msa0579410:CDS | 40.0% | |
| GATTCGAGGGATTTCAGATA+TGG | - | chr4_1:84065132-84065151 | Msa0579410:CDS | 40.0% | |
| CTATGAATTCAAGAGGCCTA+AGG | - | chr4_1:84065194-84065213 | Msa0579410:CDS | 40.0% | |
| GATTTATCTGCTTCCACCTT+AGG | + | chr4_1:84065213-84065232 | None:intergenic | 40.0% | |
| AAGGTGGAAGCAGATAAATC+TGG | - | chr4_1:84065213-84065232 | Msa0579410:CDS | 40.0% | |
| GAAATCAGGTACGATGGATA+AGG | - | chr4_1:84065287-84065306 | Msa0579410:CDS | 40.0% | |
| AGGTACGATGGATAAGGATT+TGG | - | chr4_1:84065293-84065312 | Msa0579410:CDS | 40.0% | |
| !! | GATGGTGGAAACCTCATTTA+TGG | - | chr4_1:84064469-84064488 | Msa0579410:CDS | 40.0% |
| ! | CCACAAAGTGCTTTCAATGA+AGG | + | chr4_1:84064643-84064662 | None:intergenic | 40.0% |
| !! | CCTTCATTGAAAGCACTTTG+TGG | - | chr4_1:84064640-84064659 | Msa0579410:CDS | 40.0% |
| GAAGATCAACAAGGCTATGA+TGG | - | chr4_1:84064693-84064712 | Msa0579410:CDS | 40.0% | |
| !! | ATCTGTTTCTGAGATGGAAC+AGG | - | chr4_1:84064873-84064892 | Msa0579410:CDS | 40.0% |
| !! | TAATGCTCGTGAGTTTGTTG+CGG | - | chr4_1:84065056-84065075 | Msa0579410:CDS | 40.0% |
| GAAGAAGAAGAAGCTGAAGA+TGG | - | chr4_1:84065083-84065102 | Msa0579410:CDS | 40.0% | |
| AAGAAGAAGCTGAAGATGGT+TGG | - | chr4_1:84065087-84065106 | Msa0579410:CDS | 40.0% | |
| AGAAGAAGCTGAAGATGGTT+GGG | - | chr4_1:84065088-84065107 | Msa0579410:CDS | 40.0% | |
| GATTCGAGGGATTTCAGATA+TGG | - | chr4_1:84065132-84065151 | Msa0579410:CDS | 40.0% | |
| CTATGAATTCAAGAGGCCTA+AGG | - | chr4_1:84065194-84065213 | Msa0579410:CDS | 40.0% | |
| GATTTATCTGCTTCCACCTT+AGG | + | chr4_1:84065213-84065232 | None:intergenic | 40.0% | |
| AAGGTGGAAGCAGATAAATC+TGG | - | chr4_1:84065213-84065232 | Msa0579410:CDS | 40.0% | |
| GAAATCAGGTACGATGGATA+AGG | - | chr4_1:84065287-84065306 | Msa0579410:CDS | 40.0% | |
| AGGTACGATGGATAAGGATT+TGG | - | chr4_1:84065293-84065312 | Msa0579410:CDS | 40.0% | |
| TGCTTCAAGAGGTTTCCTTG+TGG | - | chr4_1:84064313-84064332 | Msa0579410:CDS | 45.0% | |
| GCTTCAAGAGGTTTCCTTGT+GGG | - | chr4_1:84064314-84064333 | Msa0579410:CDS | 45.0% | |
| TTTCCTTGTGGGAAGTCTCT+TGG | - | chr4_1:84064325-84064344 | Msa0579410:CDS | 45.0% | |
| !! | GAAAGCACTTTGTGGTCACA+TGG | - | chr4_1:84064648-84064667 | Msa0579410:CDS | 45.0% |
| GATCAACAAGGCTATGATGG+AGG | - | chr4_1:84064696-84064715 | Msa0579410:CDS | 45.0% | |
| AAGCTGAAGATGGTTGGGAT+CGG | - | chr4_1:84065093-84065112 | Msa0579410:CDS | 45.0% | |
| TGAATTCAAGAGGCCTAAGG+TGG | - | chr4_1:84065197-84065216 | Msa0579410:CDS | 45.0% | |
| ! | CTGGTATGAGATTTTGCAGC+AGG | + | chr4_1:84065522-84065541 | None:intergenic | 45.0% |
| TTCAGGTCAGGACAAGCATT+AGG | - | chr4_1:84065648-84065667 | Msa0579410:CDS | 45.0% | |
| TGCTTCAAGAGGTTTCCTTG+TGG | - | chr4_1:84064313-84064332 | Msa0579410:CDS | 45.0% | |
| GCTTCAAGAGGTTTCCTTGT+GGG | - | chr4_1:84064314-84064333 | Msa0579410:CDS | 45.0% | |
| TTTCCTTGTGGGAAGTCTCT+TGG | - | chr4_1:84064325-84064344 | Msa0579410:CDS | 45.0% | |
| !! | GAAAGCACTTTGTGGTCACA+TGG | - | chr4_1:84064648-84064667 | Msa0579410:CDS | 45.0% |
| GATCAACAAGGCTATGATGG+AGG | - | chr4_1:84064696-84064715 | Msa0579410:CDS | 45.0% | |
| AAGCTGAAGATGGTTGGGAT+CGG | - | chr4_1:84065093-84065112 | Msa0579410:CDS | 45.0% | |
| TGAATTCAAGAGGCCTAAGG+TGG | - | chr4_1:84065197-84065216 | Msa0579410:CDS | 45.0% | |
| ! | CTGGTATGAGATTTTGCAGC+AGG | + | chr4_1:84065522-84065541 | None:intergenic | 45.0% |
| TTCAGGTCAGGACAAGCATT+AGG | - | chr4_1:84065648-84065667 | Msa0579410:CDS | 45.0% | |
| TGCTACTGCTGCAACCACAT+TGG | - | chr4_1:84064570-84064589 | Msa0579410:CDS | 50.0% | |
| ! | CAACAAGGCTATGATGGAGG+AGG | - | chr4_1:84064699-84064718 | Msa0579410:CDS | 50.0% |
| AGGTCAGGACAAGCATTAGG+AGG | - | chr4_1:84065651-84065670 | Msa0579410:CDS | 50.0% | |
| TGCTACTGCTGCAACCACAT+TGG | - | chr4_1:84064570-84064589 | Msa0579410:CDS | 50.0% | |
| ! | CAACAAGGCTATGATGGAGG+AGG | - | chr4_1:84064699-84064718 | Msa0579410:CDS | 50.0% |
| AGGTCAGGACAAGCATTAGG+AGG | - | chr4_1:84065651-84065670 | Msa0579410:CDS | 50.0% | |
| CCACCAAGAGACTTCCCACA+AGG | + | chr4_1:84064331-84064350 | None:intergenic | 55.0% | |
| CCTTGTGGGAAGTCTCTTGG+TGG | - | chr4_1:84064328-84064347 | Msa0579410:CDS | 55.0% | |
| GTTTCCACCATCACCAGCAC+CGG | + | chr4_1:84064461-84064480 | None:intergenic | 55.0% | |
| CCACCAAGAGACTTCCCACA+AGG | + | chr4_1:84064331-84064350 | None:intergenic | 55.0% | |
| CCTTGTGGGAAGTCTCTTGG+TGG | - | chr4_1:84064328-84064347 | Msa0579410:CDS | 55.0% | |
| GTTTCCACCATCACCAGCAC+CGG | + | chr4_1:84064461-84064480 | None:intergenic | 55.0% | |
| ATTGCTGCTGCTGCTGCTGC+TGG | - | chr4_1:84064397-84064416 | Msa0579410:CDS | 60.0% | |
| GCTGCTGAGCATGTTGCTGC+TGG | - | chr4_1:84064424-84064443 | Msa0579410:CDS | 60.0% | |
| GCTGAGCATGTTGCTGCTGG+TGG | - | chr4_1:84064427-84064446 | Msa0579410:CDS | 60.0% | |
| ! | CATGTTGCTGCTGGTGGTGC+CGG | - | chr4_1:84064433-84064452 | Msa0579410:CDS | 60.0% |
| ATTGCTGCTGCTGCTGCTGC+TGG | - | chr4_1:84064397-84064416 | Msa0579410:CDS | 60.0% | |
| GCTGCTGAGCATGTTGCTGC+TGG | - | chr4_1:84064424-84064443 | Msa0579410:CDS | 60.0% | |
| GCTGAGCATGTTGCTGCTGG+TGG | - | chr4_1:84064427-84064446 | Msa0579410:CDS | 60.0% | |
| ! | CATGTTGCTGCTGGTGGTGC+CGG | - | chr4_1:84064433-84064452 | Msa0579410:CDS | 60.0% |
| !! | ACCATCACCAGCACCGGCAC+CGG | + | chr4_1:84064455-84064474 | None:intergenic | 65.0% |
| !! | ACCATCACCAGCACCGGCAC+CGG | + | chr4_1:84064455-84064474 | None:intergenic | 65.0% |
| !! | GGTGCCGGTGCTGGTGATGG+TGG | - | chr4_1:84064454-84064473 | Msa0579410:CDS | 70.0% |
| !! | GGTGCCGGTGCTGGTGATGG+TGG | - | chr4_1:84064454-84064473 | Msa0579410:CDS | 70.0% |
| !! | GCTGCTGGTGGTGCCGGTGC+CGG | - | chr4_1:84064439-84064458 | Msa0579410:CDS | 75.0% |
| !! | GCCGGTGCCGGTGCTGGTGA+TGG | - | chr4_1:84064451-84064470 | Msa0579410:CDS | 75.0% |
| !! | GCTGCTGGTGGTGCCGGTGC+CGG | - | chr4_1:84064439-84064458 | Msa0579410:CDS | 75.0% |
| !! | GCCGGTGCCGGTGCTGGTGA+TGG | - | chr4_1:84064451-84064470 | Msa0579410:CDS | 75.0% |
| !!! | GGTGGTGCCGGTGCCGGTGC+TGG | - | chr4_1:84064445-84064464 | Msa0579410:CDS | 80.0% |
| !!! | GGTGGTGCCGGTGCCGGTGC+TGG | - | chr4_1:84064445-84064464 | Msa0579410:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84064277 | 84065794 | 84064277 | ID=Msa0579410;Name=Msa0579410 |
| chr4_1 | mRNA | 84064277 | 84065794 | 84064277 | ID=Msa0579410-mRNA-1;Parent=Msa0579410;Name=Msa0579410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|505 |
| chr4_1 | exon | 84064277 | 84065794 | 84064277 | ID=Msa0579410-mRNA-1:exon:30761;Parent=Msa0579410-mRNA-1 |
| chr4_1 | CDS | 84064277 | 84065794 | 84064277 | ID=Msa0579410-mRNA-1:cds;Parent=Msa0579410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
