Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579880 | XP_003607688.2 | 57.798 | 218 | 40 | 4 | 334 | 502 | 159 | 373 | 1.78e-56 | 213 |
| Msa0579880 | XP_003607688.2 | 91.525 | 295 | 18 | 1 | 1 | 295 | 1 | 288 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579880 | sp|O49711|PP335_ARATH | 41.139 | 158 | 93 | 0 | 122 | 279 | 118 | 275 | 3.00e-33 | 137 |
| Msa0579880 | sp|O49711|PP335_ARATH | 41.085 | 129 | 71 | 3 | 377 | 501 | 248 | 375 | 1.64e-16 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579880 | G7JF19 | 57.798 | 218 | 40 | 4 | 334 | 502 | 159 | 373 | 8.51e-57 | 213 |
| Msa0579880 | G7JF19 | 91.525 | 295 | 18 | 1 | 1 | 295 | 1 | 288 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579880 | Msa0579930 | 0.809153 | 2.177833e-50 | -8.615850e-47 |
| Msa0579880 | Msa1179970 | 0.800062 | 1.718821e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579880 | MtrunA17_Chr4g0041921 | 91.525 | 295 | 18 | 1 | 1 | 295 | 1 | 288 | 0.0 | 561 |
| Msa0579880 | MtrunA17_Chr4g0041921 | 57.798 | 218 | 40 | 4 | 334 | 502 | 159 | 373 | 1.64e-60 | 213 |
| Msa0579880 | MtrunA17_Chr4g0041891 | 59.701 | 268 | 22 | 2 | 294 | 475 | 50 | 317 | 3.07e-89 | 276 |
| Msa0579880 | MtrunA17_Chr4g0041891 | 52.703 | 296 | 105 | 8 | 1 | 295 | 1 | 262 | 1.22e-81 | 257 |
| Msa0579880 | MtrunA17_Chr2g0319471 | 39.600 | 250 | 139 | 1 | 90 | 339 | 78 | 315 | 8.14e-57 | 197 |
| Msa0579880 | MtrunA17_Chr2g0319471 | 44.118 | 204 | 65 | 3 | 345 | 499 | 162 | 365 | 6.70e-43 | 159 |
| Msa0579880 | MtrunA17_Chr7g0215611 | 48.619 | 181 | 91 | 2 | 118 | 296 | 49 | 229 | 4.70e-45 | 163 |
| Msa0579880 | MtrunA17_Chr7g0215611 | 58.209 | 134 | 47 | 4 | 376 | 502 | 184 | 315 | 5.05e-35 | 135 |
| Msa0579880 | MtrunA17_Chr7g0223561 | 55.814 | 129 | 47 | 5 | 376 | 499 | 43 | 166 | 5.06e-29 | 117 |
| Msa0579880 | MtrunA17_Chr7g0223561 | 56.579 | 76 | 28 | 2 | 223 | 296 | 13 | 85 | 4.39e-16 | 79.7 |
| Msa0579880 | MtrunA17_Chr7g0223591 | 54.962 | 131 | 49 | 5 | 376 | 501 | 147 | 272 | 3.62e-28 | 115 |
| Msa0579880 | MtrunA17_Chr7g0223591 | 47.009 | 117 | 49 | 4 | 183 | 296 | 83 | 189 | 6.51e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579880 | AT4G21880.1 | 41.139 | 158 | 93 | 0 | 122 | 279 | 118 | 275 | 3.05e-34 | 137 |
| Msa0579880 | AT4G21880.1 | 41.085 | 129 | 71 | 3 | 377 | 501 | 248 | 375 | 1.67e-17 | 86.3 |
| Msa0579880 | AT4G21880.2 | 41.139 | 158 | 93 | 0 | 122 | 279 | 74 | 231 | 3.72e-34 | 137 |
| Msa0579880 | AT4G21880.2 | 41.085 | 129 | 71 | 3 | 377 | 501 | 204 | 331 | 1.50e-17 | 86.7 |
| Msa0579880 | AT4G04790.3 | 37.079 | 178 | 111 | 1 | 120 | 296 | 91 | 268 | 2.60e-32 | 132 |
| Msa0579880 | AT4G04790.3 | 39.231 | 130 | 76 | 1 | 375 | 501 | 222 | 351 | 6.95e-21 | 97.1 |
| Msa0579880 | AT4G04790.1 | 37.079 | 178 | 111 | 1 | 120 | 296 | 95 | 272 | 2.62e-32 | 132 |
| Msa0579880 | AT4G04790.1 | 39.231 | 130 | 76 | 1 | 375 | 501 | 226 | 355 | 7.04e-21 | 97.1 |
| Msa0579880 | AT4G04790.2 | 37.879 | 132 | 82 | 0 | 165 | 296 | 4 | 135 | 5.36e-24 | 106 |
| Msa0579880 | AT4G04790.2 | 39.231 | 130 | 76 | 1 | 375 | 501 | 89 | 218 | 6.88e-21 | 96.7 |
Find 90 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAAATGTGAACGAAAAT+TGG | 0.202363 | 4_1:-84724162 | None:intergenic |
| ATTCCCTCATTAATTTAAAA+AGG | 0.215848 | 4_1:-84725058 | None:intergenic |
| TGTTGATGTGTTTGGCTACT+TGG | 0.233196 | 4_1:+84724923 | Msa0579880:CDS |
| AAGTTCCTCACCGCTAAATT+TGG | 0.241089 | 4_1:-84731773 | None:intergenic |
| TTGTAAAAGTGGTCGCATTT+TGG | 0.268158 | 4_1:+84730883 | Msa0579880:CDS |
| TCAAATATATTCCAATTCTT+AGG | 0.313405 | 4_1:+84730956 | Msa0579880:CDS |
| AGATGCGGAGAATTTACTTT+TGG | 0.328866 | 4_1:+84730997 | Msa0579880:CDS |
| GATTGTGTTTGAGGGTTGAT+AGG | 0.345977 | 4_1:-84724268 | None:intergenic |
| TGAAATTGAACTGGGATTAC+CGG | 0.350457 | 4_1:-84725183 | None:intergenic |
| TCTCTGTAGGCAAAGCTCAT+AGG | 0.351479 | 4_1:+84729774 | Msa0579880:intron |
| CCCAGTTCAATTTCACGATT+GGG | 0.359122 | 4_1:+84725191 | Msa0579880:CDS |
| CCCAGTTCAATTTCACGATT+GGG | 0.359122 | 4_1:+84730260 | Msa0579880:CDS |
| GCAGTAGCCTTCCTAAGAAT+TGG | 0.366048 | 4_1:-84730967 | None:intergenic |
| GGTTCAAGTCAGAATGAAAA+TGG | 0.368361 | 4_1:-84724247 | None:intergenic |
| ACCCAATCGTGAAATTGAAC+TGG | 0.401785 | 4_1:-84725192 | None:intergenic |
| ACCCAATCGTGAAATTGAAC+TGG | 0.401785 | 4_1:-84730261 | None:intergenic |
| ATGAAATGTTGTTGTGGATA+AGG | 0.406914 | 4_1:+84730288 | Msa0579880:CDS |
| ACTACTACTGTTGATGTGTT+TGG | 0.410755 | 4_1:+84724915 | Msa0579880:CDS |
| AGTTGTGCATAAAGAAGATC+AGG | 0.414424 | 4_1:+84724985 | Msa0579880:CDS |
| GTGGAACAAGATTGTGTTTG+AGG | 0.415426 | 4_1:-84724277 | None:intergenic |
| TTCTATGATGTTATCAAAGC+CGG | 0.420190 | 4_1:+84725164 | Msa0579880:CDS |
| TGAAATGTTGTTGTGGATAA+GGG | 0.420727 | 4_1:+84730289 | Msa0579880:CDS |
| GGCTACTTGGGCCGAGACAC+TGG | 0.425289 | 4_1:+84724936 | Msa0579880:CDS |
| GATGAAGAGGAGGATTTGTC+TGG | 0.429413 | 4_1:+84724506 | Msa0579880:intron |
| ATGATGAAGAAAAGGAGAAA+AGG | 0.430079 | 4_1:+84724733 | Msa0579880:CDS |
| TCCCAGTTCAATTTCACGAT+TGG | 0.430637 | 4_1:+84725190 | Msa0579880:CDS |
| TCCCAGTTCAATTTCACGAT+TGG | 0.430637 | 4_1:+84730259 | Msa0579880:CDS |
| TTATTAGCTCTTTGTAAAAG+TGG | 0.435506 | 4_1:+84730872 | Msa0579880:CDS |
| ATGAAATGTTGCTGTGGATA+AGG | 0.436557 | 4_1:+84725219 | Msa0579880:CDS |
| GATTTATCTGATATATTGCT+TGG | 0.448830 | 4_1:+84729623 | Msa0579880:CDS |
| GGGAGTTGATGATGAAGAAA+AGG | 0.450224 | 4_1:+84724725 | Msa0579880:CDS |
| CTGTAGCCTCTTTGTAGAGA+AGG | 0.453182 | 4_1:+84724692 | Msa0579880:CDS |
| TTAAATTAATGAGGGAATGT+GGG | 0.455932 | 4_1:+84725063 | Msa0579880:CDS |
| CTCTGTAGGCAAAGCTCATA+GGG | 0.459296 | 4_1:+84729775 | Msa0579880:intron |
| ACTGGCGTGAAAGAGTATAA+TGG | 0.460264 | 4_1:+84724954 | Msa0579880:CDS |
| TAGCCTTCTTTATGCACGAT+TGG | 0.461512 | 4_1:-84730053 | None:intergenic |
| TTAACAATGAAGAAATGATC+CGG | 0.461784 | 4_1:+84725243 | Msa0579880:CDS |
| TTATGAGAATCTAGCACCTC+TGG | 0.468092 | 4_1:-84729851 | None:intergenic |
| TGAAATGTTGCTGTGGATAA+GGG | 0.473646 | 4_1:+84725220 | Msa0579880:CDS |
| TCCATTTGTGTTTCCTCTCA+CGG | 0.475171 | 4_1:-84724824 | None:intergenic |
| CACAATCTTGTTCCACCTCC+AGG | 0.476710 | 4_1:+84724284 | Msa0579880:CDS |
| TTTAAATTAATGAGGGAATG+TGG | 0.479424 | 4_1:+84725062 | Msa0579880:CDS |
| TGATGAAGAAAAGGAGAAAA+GGG | 0.482082 | 4_1:+84724734 | Msa0579880:CDS |
| CCATTTGTGTTTCCTCTCAC+GGG | 0.484707 | 4_1:-84724823 | None:intergenic |
| AGAAAAGGAGAAAAGGGTTG+TGG | 0.485191 | 4_1:+84724740 | Msa0579880:CDS |
| GTAGAGAAGGTTAATTGTGA+GGG | 0.495752 | 4_1:+84724705 | Msa0579880:CDS |
| CCCGTGAGAGGAAACACAAA+TGG | 0.498529 | 4_1:+84724823 | Msa0579880:CDS |
| ACTCTTTCACGCCAGTGTCT+CGG | 0.498681 | 4_1:-84724947 | None:intergenic |
| TTTGTTTACTTTAGATGAAG+AGG | 0.500057 | 4_1:+84724493 | Msa0579880:intron |
| TTAACAACGAAGAAAAGATC+CGG | 0.501886 | 4_1:+84730312 | Msa0579880:CDS |
| TGGAACAAGATTGTGTTTGA+GGG | 0.503480 | 4_1:-84724276 | None:intergenic |
| CAATGTATTGACATATATCC+CGG | 0.503589 | 4_1:-84730331 | None:intergenic |
| GTTGATGTGTTTGGCTACTT+GGG | 0.505119 | 4_1:+84724924 | Msa0579880:CDS |
| AAGAATATGATGAAGAAGAA+AGG | 0.508036 | 4_1:-84723959 | None:intergenic |
| AGTCAGAATGAAAATGGTGA+TGG | 0.521003 | 4_1:-84724241 | None:intergenic |
| ATAGTGATTTATCAAAGAAA+CGG | 0.525019 | 4_1:+84724790 | Msa0579880:CDS |
| GCTCATAGGGTAAAGAAGCT+TGG | 0.525367 | 4_1:+84729788 | Msa0579880:CDS |
| TGATGGGTTTCTTCATATTG+AGG | 0.528320 | 4_1:-84724224 | None:intergenic |
| ATTCTTAGGAAGGCTACTGC+TGG | 0.529185 | 4_1:+84730970 | Msa0579880:CDS |
| AATCGTGCATAAAGAAGGCT+AGG | 0.536204 | 4_1:+84730055 | Msa0579880:CDS |
| CCCAATCGTGAAATTGAACT+GGG | 0.538516 | 4_1:-84725191 | None:intergenic |
| CCCAATCGTGAAATTGAACT+GGG | 0.538516 | 4_1:-84730260 | None:intergenic |
| ATCTGTGCGGTTTGTGAAGT+AGG | 0.539229 | 4_1:-84724072 | None:intergenic |
| TGTAGAGAAGGTTAATTGTG+AGG | 0.540957 | 4_1:+84724704 | Msa0579880:CDS |
| GATCCAATCGTGCATAAAGA+AGG | 0.543161 | 4_1:+84730050 | Msa0579880:CDS |
| ATATATTCCAATTCTTAGGA+AGG | 0.548768 | 4_1:+84730960 | Msa0579880:CDS |
| TAAGAACAATGCGAAGAAGA+TGG | 0.555704 | 4_1:-84724098 | None:intergenic |
| TGATGTATTCGCAAATATCC+CGG | 0.562159 | 4_1:-84725262 | None:intergenic |
| GGAATGAATCGTCCCGTGAG+AGG | 0.564784 | 4_1:+84724811 | Msa0579880:CDS |
| ACTTAGCATTCCAAATTTAG+CGG | 0.565461 | 4_1:+84731763 | Msa0579880:CDS |
| GTCAGAATGAAAATGGTGAT+GGG | 0.575314 | 4_1:-84724240 | None:intergenic |
| GTTACTATGAAATGTTGTTG+TGG | 0.580165 | 4_1:+84730282 | Msa0579880:CDS |
| TAACAATGAAGAAATGATCC+GGG | 0.581231 | 4_1:+84725244 | Msa0579880:CDS |
| TTTGAGTATATAATTGACAT+GGG | 0.592700 | 4_1:+84725119 | Msa0579880:CDS |
| GTTTACTTTAGATGAAGAGG+AGG | 0.597996 | 4_1:+84724496 | Msa0579880:intron |
| CTGGTGGTGAACGATCTGAC+CGG | 0.603581 | 4_1:+84724859 | Msa0579880:CDS |
| GCATTCCAAATTTAGCGGTG+AGG | 0.613225 | 4_1:+84731768 | Msa0579880:CDS |
| AATTAACCTTCTCTACAAAG+AGG | 0.618367 | 4_1:-84724698 | None:intergenic |
| TAACAACGAAGAAAAGATCC+GGG | 0.629862 | 4_1:+84730313 | Msa0579880:CDS |
| TGATGAATGTCTCGTATCAG+CGG | 0.645466 | 4_1:-84724768 | None:intergenic |
| GTTACTATGAAATGTTGCTG+TGG | 0.650666 | 4_1:+84725213 | Msa0579880:CDS |
| GCTACTGCTGGAATCAGATG+CGG | 0.662155 | 4_1:+84730982 | Msa0579880:CDS |
| AAAGACACTTCTGCTTTACG+AGG | 0.662394 | 4_1:+84725299 | Msa0579880:CDS |
| ATCGTGCATAAAGAAGGCTA+GGG | 0.668843 | 4_1:+84730056 | Msa0579880:CDS |
| AAAAGTGAGGAGCATACCAG+AGG | 0.672080 | 4_1:+84729835 | Msa0579880:CDS |
| AGACATGGAGAAGCATACAT+CGG | 0.691038 | 4_1:+84730922 | Msa0579880:CDS |
| GTTGTGCATAAAGAAGATCA+GGG | 0.691662 | 4_1:+84724986 | Msa0579880:CDS |
| TATTTGCGAATACATCACTG+TGG | 0.761907 | 4_1:+84725268 | Msa0579880:CDS |
| AAAGACACTTCTGCTCTACG+AGG | 0.772753 | 4_1:+84730368 | Msa0579880:CDS |
| AAGAAGATGGTGAATCTGTG+CGG | 0.791716 | 4_1:-84724085 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTATTGATCTTAA+TGG | + | chr4_1:84726240-84726259 | Msa0579880:intron | 10.0% |
| !!! | TAATTTTTATTGATCTTAAT+GGG | + | chr4_1:84726241-84726260 | Msa0579880:intron | 10.0% |
| !!! | TATTATAAAAAAGTTTGTTT+AGG | + | chr4_1:84728358-84728377 | Msa0579880:intron | 10.0% |
| !! | ATATTTATACTATATATAAG+AGG | - | chr4_1:84728426-84728445 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | + | chr4_1:84728833-84728852 | Msa0579880:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTTG+TGG | + | chr4_1:84729106-84729125 | Msa0579880:intron | 10.0% |
| !! | AAAATACATTATAAACATAA+AGG | - | chr4_1:84731167-84731186 | None:intergenic | 10.0% |
| !!! | GTTAAAAATCAATTAATTTT+TGG | - | chr4_1:84731381-84731400 | None:intergenic | 10.0% |
| !!! | ATAACCTTTTTAAATTAATG+AGG | + | chr4_1:84725054-84725073 | Msa0579880:CDS | 15.0% |
| !!! | TAACCTTTTTAAATTAATGA+GGG | + | chr4_1:84725055-84725074 | Msa0579880:CDS | 15.0% |
| !! | TTATTGATAAATAAAAGAAC+AGG | - | chr4_1:84726279-84726298 | None:intergenic | 15.0% |
| !!! | AGATTTTACAAAAGTTTTAT+AGG | - | chr4_1:84726448-84726467 | None:intergenic | 15.0% |
| !!! | TGATTTGTAAAATTGTTTTT+TGG | + | chr4_1:84728606-84728625 | Msa0579880:intron | 15.0% |
| !!! | GATTTGTAAAATTGTTTTTT+GGG | + | chr4_1:84728607-84728626 | Msa0579880:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4_1:84728810-84728829 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4_1:84728809-84728828 | Msa0579880:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | + | chr4_1:84729109-84729128 | Msa0579880:intron | 15.0% |
| !!! | TTTTCTTTTTAAAATAACGA+AGG | - | chr4_1:84729154-84729173 | None:intergenic | 15.0% |
| !! | AATTATGAACAAAATTATTC+TGG | + | chr4_1:84730812-84730831 | Msa0579880:intron | 15.0% |
| !!! | TTAATTGATTTTTAACTTAG+AGG | + | chr4_1:84731385-84731404 | Msa0579880:intron | 15.0% |
| !!! | TCTTTTTGTTTTTGAGTTAA+TGG | + | chr4_1:84724363-84724382 | Msa0579880:intron | 20.0% |
| !!! | CTTTTTGTTTTTGAGTTAAT+GGG | + | chr4_1:84724364-84724383 | Msa0579880:intron | 20.0% |
| !! | ATAGTGATTTATCAAAGAAA+CGG | + | chr4_1:84724790-84724809 | Msa0579880:CDS | 20.0% |
| !! | AAAATATGTGCAAAAAAACT+AGG | + | chr4_1:84724888-84724907 | Msa0579880:CDS | 20.0% |
| !! | ATTCCCTCATTAATTTAAAA+AGG | - | chr4_1:84725061-84725080 | None:intergenic | 20.0% |
| !! | TCAATTATATACTCAAAAAG+TGG | - | chr4_1:84725116-84725135 | None:intergenic | 20.0% |
| !!! | TTTTGAGTATATAATTGACA+TGG | + | chr4_1:84725118-84725137 | Msa0579880:CDS | 20.0% |
| !! | TTTGAGTATATAATTGACAT+GGG | + | chr4_1:84725119-84725138 | Msa0579880:CDS | 20.0% |
| !! | ATCAAATATATTCCAATCAT+TGG | + | chr4_1:84725899-84725918 | Msa0579880:intron | 20.0% |
| !! | TCAAATATATTCCAATCATT+GGG | + | chr4_1:84725900-84725919 | Msa0579880:intron | 20.0% |
| !! | AATAATGTAAATTTCAAACC+TGG | - | chr4_1:84726129-84726148 | None:intergenic | 20.0% |
| !!! | AAAATTTTGCTACAACATAT+TGG | - | chr4_1:84726352-84726371 | None:intergenic | 20.0% |
| !!! | GCAAAATTTTATTATTGATC+TGG | + | chr4_1:84726362-84726381 | Msa0579880:intron | 20.0% |
| !!! | TGTTTTTATTAGATCTCAAA+TGG | - | chr4_1:84726400-84726419 | None:intergenic | 20.0% |
| !!! | AGTAGAAAATCAATTACTTT+TGG | - | chr4_1:84727175-84727194 | None:intergenic | 20.0% |
| !! | AAATTATCTGATATTGTATG+AGG | + | chr4_1:84727306-84727325 | Msa0579880:intron | 20.0% |
| !! | ATTGAAATAAATAAACATCG+TGG | - | chr4_1:84728228-84728247 | None:intergenic | 20.0% |
| !! | CATATAATATTGTTTATGGT+TGG | - | chr4_1:84728302-84728321 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTAGGATATAATT+TGG | + | chr4_1:84728369-84728388 | Msa0579880:intron | 20.0% |
| !! | TACTATATATAAGAGGATAA+GGG | - | chr4_1:84728419-84728438 | None:intergenic | 20.0% |
| !! | ATACTATATATAAGAGGATA+AGG | - | chr4_1:84728420-84728439 | None:intergenic | 20.0% |
| !! | AAGTCTGAAAAAAAAGATTT+GGG | - | chr4_1:84728472-84728491 | None:intergenic | 20.0% |
| !! | AAAGTCTGAAAAAAAAGATT+TGG | - | chr4_1:84728473-84728492 | None:intergenic | 20.0% |
| !!! | CAATTATGTTAATTCTAGTT+TGG | - | chr4_1:84728509-84728528 | None:intergenic | 20.0% |
| !! | GTTTGATCTACTAAAAAATA+AGG | + | chr4_1:84728551-84728570 | Msa0579880:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr4_1:84728776-84728795 | Msa0579880:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr4_1:84728819-84728838 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4_1:84728896-84728915 | Msa0579880:intron | 20.0% |
| !!! | AACAAATTTTTTTTTGGCTA+AGG | + | chr4_1:84728944-84728963 | Msa0579880:intron | 20.0% |
| !!! | TTATCTTATACGATTTTTTG+TGG | - | chr4_1:84729027-84729046 | None:intergenic | 20.0% |
| !!! | ACAAGATAAACTTTTATAGT+TGG | - | chr4_1:84729058-84729077 | None:intergenic | 20.0% |
| !! | ATGAGTATTTATGAATATCT+TGG | + | chr4_1:84729203-84729222 | Msa0579880:intron | 20.0% |
| !! | TGAGTATTTATGAATATCTT+GGG | + | chr4_1:84729204-84729223 | Msa0579880:intron | 20.0% |
| !! | TCAATTATATACTCAAGAAT+TGG | - | chr4_1:84730185-84730204 | None:intergenic | 20.0% |
| !! | TCAAATATATTCCAATTCTT+AGG | + | chr4_1:84730956-84730975 | Msa0579880:CDS | 20.0% |
| !! | GTATAGTCTACATTATAAAA+CGG | + | chr4_1:84731252-84731271 | Msa0579880:intron | 20.0% |
| !!! | AATCAATTAATTTTTGGCTA+CGG | - | chr4_1:84731375-84731394 | None:intergenic | 20.0% |
| !!! | TCTTTATAACATGTTTTATC+TGG | + | chr4_1:84731589-84731608 | Msa0579880:intron | 20.0% |
| !! | AATTATAGAAGGTAATACTT+AGG | - | chr4_1:84731655-84731674 | None:intergenic | 20.0% |
| ! | AAGAATATGATGAAGAAGAA+AGG | - | chr4_1:84723962-84723981 | None:intergenic | 25.0% |
| ! | TTGTAAATGTGAACGAAAAT+TGG | - | chr4_1:84724165-84724184 | None:intergenic | 25.0% |
| !!! | GTGAAATTTTGATAGATGAA+AGG | - | chr4_1:84724205-84724224 | None:intergenic | 25.0% |
| !!! | TTAATGGGTTTTGTTTTTTG+AGG | + | chr4_1:84724379-84724398 | Msa0579880:intron | 25.0% |
| ! | TTTGTTTACTTTAGATGAAG+AGG | + | chr4_1:84724493-84724512 | Msa0579880:intron | 25.0% |
| ! | TAAATTTCACAAACACTTAC+AGG | - | chr4_1:84724561-84724580 | None:intergenic | 25.0% |
| ! | TTTAAATTAATGAGGGAATG+TGG | + | chr4_1:84725062-84725081 | Msa0579880:CDS | 25.0% |
| ! | TTAAATTAATGAGGGAATGT+GGG | + | chr4_1:84725063-84725082 | Msa0579880:CDS | 25.0% |
| ! | TTAACAATGAAGAAATGATC+CGG | + | chr4_1:84725243-84725262 | Msa0579880:CDS | 25.0% |
| !! | CATCAGATACAAAAGTTTTA+TGG | + | chr4_1:84725564-84725583 | Msa0579880:intron | 25.0% |
| !!! | TCTCAAATTCTGTTTTGTTT+TGG | + | chr4_1:84726087-84726106 | Msa0579880:intron | 25.0% |
| !!! | CAATTTTAGTTCGATTGTTT+GGG | + | chr4_1:84726166-84726185 | Msa0579880:intron | 25.0% |
| ! | TTTACTTATCCTCTTAAATG+TGG | + | chr4_1:84726302-84726321 | Msa0579880:intron | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | + | chr4_1:84726668-84726687 | Msa0579880:intron | 25.0% |
| !! | TCTTTCCTAATAGTTTTTCT+AGG | - | chr4_1:84726769-84726788 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | chr4_1:84726786-84726805 | Msa0579880:intron | 25.0% |
| ! | GAATTAAGTTCATAAAAGAG+TGG | + | chr4_1:84727007-84727026 | Msa0579880:intron | 25.0% |
| ! | AAGTTATGGTAAATGTTGAT+AGG | + | chr4_1:84727039-84727058 | Msa0579880:intron | 25.0% |
| ! | AGTTATGGTAAATGTTGATA+GGG | + | chr4_1:84727040-84727059 | Msa0579880:intron | 25.0% |
| !!! | AAATCAATTACTTTTGGCTA+TGG | - | chr4_1:84727169-84727188 | None:intergenic | 25.0% |
| ! | GAATGAATTTATAGAAGGTT+AGG | - | chr4_1:84727594-84727613 | None:intergenic | 25.0% |
| ! | GAGGCATATAATATTGTTTA+TGG | - | chr4_1:84728306-84728325 | None:intergenic | 25.0% |
| !!! | TGTTGATTGTGTTTTTTAAG+AGG | - | chr4_1:84728325-84728344 | None:intergenic | 25.0% |
| !!! | AAACACACGTAGTTTTTTAA+GGG | - | chr4_1:84728535-84728554 | None:intergenic | 25.0% |
| !!! | TAAAACGACACATTTTGAAA+CGG | - | chr4_1:84728729-84728748 | None:intergenic | 25.0% |
| !!! | TTTTTAAAATAACGAAGGTC+CGG | - | chr4_1:84729149-84729168 | None:intergenic | 25.0% |
| ! | GAGTATTTATGAATATCTTG+GGG | + | chr4_1:84729205-84729224 | Msa0579880:intron | 25.0% |
| !! | TAGAATCTAAATGGAGTTTT+TGG | - | chr4_1:84729463-84729482 | None:intergenic | 25.0% |
| !! | TTATGTGTTTTATGTACCTT+GGG | - | chr4_1:84729500-84729519 | None:intergenic | 25.0% |
| !! | TTTATGTGTTTTATGTACCT+TGG | - | chr4_1:84729501-84729520 | None:intergenic | 25.0% |
| ! | CTAAGCAAAAATGAAAAAGT+GGG | - | chr4_1:84729543-84729562 | None:intergenic | 25.0% |
| ! | ACTAAGCAAAAATGAAAAAG+TGG | - | chr4_1:84729544-84729563 | None:intergenic | 25.0% |
| ! | TAACACAAAAACATCAACAA+CGG | - | chr4_1:84729574-84729593 | None:intergenic | 25.0% |
| !!! | TGTTGATGTTTTTGTGTTAA+TGG | + | chr4_1:84729575-84729594 | Msa0579880:intron | 25.0% |
| ! | GATTTATCTGATATATTGCT+TGG | + | chr4_1:84729623-84729642 | Msa0579880:CDS | 25.0% |
| !!! | TTTCGCTCATTGATTTTAAA+AGG | - | chr4_1:84730131-84730150 | None:intergenic | 25.0% |
| ! | TTAAAATCAATGAGCGAAAA+CGG | + | chr4_1:84730132-84730151 | Msa0579880:intron | 25.0% |
| ! | TCTTGAGTATATAATTGACA+TGG | + | chr4_1:84730187-84730206 | Msa0579880:intron | 25.0% |
| ! | CTTGAGTATATAATTGACAT+GGG | + | chr4_1:84730188-84730207 | Msa0579880:intron | 25.0% |
| ! | AAAGTTGAAATTCTTGAACA+AGG | - | chr4_1:84730214-84730233 | None:intergenic | 25.0% |
| ! | AAATGAAAACCATCATGTAT+GGG | - | chr4_1:84730534-84730553 | None:intergenic | 25.0% |
| !! | GTTTTCATTTGATGTACTAT+TGG | + | chr4_1:84730544-84730563 | Msa0579880:intron | 25.0% |
| ! | AGTATAGAAATTATTGTGCT+GGG | + | chr4_1:84730760-84730779 | Msa0579880:intron | 25.0% |
| !! | TTATTAGCTCTTTGTAAAAG+TGG | + | chr4_1:84730872-84730891 | Msa0579880:CDS | 25.0% |
| ! | ATATATTCCAATTCTTAGGA+AGG | + | chr4_1:84730960-84730979 | Msa0579880:CDS | 25.0% |
| !! | ACATAAAGGAGAGAATTTTA+GGG | - | chr4_1:84731153-84731172 | None:intergenic | 25.0% |
| !! | AACATAAAGGAGAGAATTTT+AGG | - | chr4_1:84731154-84731173 | None:intergenic | 25.0% |
| !!! | TGTTTTATCTGGAGTATTAA+TGG | + | chr4_1:84731600-84731619 | Msa0579880:intron | 25.0% |
| !! | TGCATAGTTTTCTAGCAATA+GGG | - | chr4_1:84724133-84724152 | None:intergenic | 30.0% |
| !!! | CTTTATGTGTTTTTAGTACC+TGG | - | chr4_1:84724305-84724324 | None:intergenic | 30.0% |
| AGAACCAGAAATGAAAATGT+GGG | - | chr4_1:84724346-84724365 | None:intergenic | 30.0% | |
| AAGAACCAGAAATGAAAATG+TGG | - | chr4_1:84724347-84724366 | None:intergenic | 30.0% | |
| AATTAACCTTCTCTACAAAG+AGG | - | chr4_1:84724701-84724720 | None:intergenic | 30.0% | |
| ATGATGAAGAAAAGGAGAAA+AGG | + | chr4_1:84724733-84724752 | Msa0579880:CDS | 30.0% | |
| TGATGAAGAAAAGGAGAAAA+GGG | + | chr4_1:84724734-84724753 | Msa0579880:CDS | 30.0% | |
| !! | AAATGGATTTTCAAAGACAC+TGG | + | chr4_1:84724840-84724859 | Msa0579880:CDS | 30.0% |
| !! | TTGCACATATTTTGAGTAAC+CGG | - | chr4_1:84724881-84724900 | None:intergenic | 30.0% |
| TTCTATGATGTTATCAAAGC+CGG | + | chr4_1:84725164-84725183 | Msa0579880:CDS | 30.0% | |
| TAACAATGAAGAAATGATCC+GGG | + | chr4_1:84725244-84725263 | Msa0579880:CDS | 30.0% | |
| !! | GTGAATCTATTTTTCATGTC+AGG | + | chr4_1:84725325-84725344 | Msa0579880:intron | 30.0% |
| GTAATGATACTGCTAAAACT+GGG | - | chr4_1:84725397-84725416 | None:intergenic | 30.0% | |
| AGTAATGATACTGCTAAAAC+TGG | - | chr4_1:84725398-84725417 | None:intergenic | 30.0% | |
| ! | GTGTACAACTACAAAAGTAT+TGG | - | chr4_1:84725444-84725463 | None:intergenic | 30.0% |
| ! | TACTAAATGACAGGTTCTAA+AGG | + | chr4_1:84725531-84725550 | Msa0579880:intron | 30.0% |
| !! | ACTAAATGACAGGTTCTAAA+GGG | + | chr4_1:84725532-84725551 | Msa0579880:intron | 30.0% |
| ATGTACTTGGAATACAATCA+TGG | - | chr4_1:84725649-84725668 | None:intergenic | 30.0% | |
| GTAATTAAAGTGATTGTTCC+AGG | + | chr4_1:84725689-84725708 | Msa0579880:intron | 30.0% | |
| TGTTGCAGAAAGTTACTTAT+TGG | + | chr4_1:84725791-84725810 | Msa0579880:intron | 30.0% | |
| ATATATTCCAATCATTGGGA+AGG | + | chr4_1:84725904-84725923 | Msa0579880:intron | 30.0% | |
| !! | AGCTTCTCAGTTGATAATAA+TGG | + | chr4_1:84726008-84726027 | Msa0579880:intron | 30.0% |
| !! | TTCTCAGTTGATAATAATGG+AGG | + | chr4_1:84726011-84726030 | Msa0579880:intron | 30.0% |
| !!! | GTTTTGTTTTGGTGTATTTG+CGG | + | chr4_1:84726098-84726117 | Msa0579880:intron | 30.0% |
| !!! | GCAATTTTAGTTCGATTGTT+TGG | + | chr4_1:84726165-84726184 | Msa0579880:intron | 30.0% |
| GTTTGGGCTACATAATAAAA+TGG | + | chr4_1:84726182-84726201 | Msa0579880:intron | 30.0% | |
| TTATAGGAGATACATGTACA+AGG | - | chr4_1:84726432-84726451 | None:intergenic | 30.0% | |
| ! | TCTACCATCTTTTCTACTAT+AGG | - | chr4_1:84726664-84726683 | None:intergenic | 30.0% |
| GAAGACCTAGAAAAACTATT+AGG | + | chr4_1:84726761-84726780 | Msa0579880:intron | 30.0% | |
| GTTCTATCATACACCATATT+GGG | - | chr4_1:84726814-84726833 | None:intergenic | 30.0% | |
| TGTTCTATCATACACCATAT+TGG | - | chr4_1:84726815-84726834 | None:intergenic | 30.0% | |
| TGGTGTATGATAGAACATTA+TGG | + | chr4_1:84726818-84726837 | Msa0579880:intron | 30.0% | |
| TGTATGATAGAACATTATGG+TGG | + | chr4_1:84726821-84726840 | Msa0579880:intron | 30.0% | |
| !!! | TTCTCAAGGATTTTAGTTCT+AGG | - | chr4_1:84726938-84726957 | None:intergenic | 30.0% |
| AGAACTAAAATCCTTGAGAA+TGG | + | chr4_1:84726938-84726957 | Msa0579880:intron | 30.0% | |
| TTAAGTTCATAAAAGAGTGG+TGG | + | chr4_1:84727010-84727029 | Msa0579880:intron | 30.0% | |
| GAAATATGTGCAAATGAGTA+GGG | + | chr4_1:84727101-84727120 | Msa0579880:intron | 30.0% | |
| TCAAGATAGAAAACAAAGTC+AGG | + | chr4_1:84727238-84727257 | Msa0579880:intron | 30.0% | |
| CAAGATAGAAAACAAAGTCA+GGG | + | chr4_1:84727239-84727258 | Msa0579880:intron | 30.0% | |
| AAGATAGAAAACAAAGTCAG+GGG | + | chr4_1:84727240-84727259 | Msa0579880:intron | 30.0% | |
| TTGTAATTCCTACTCAGTAT+TGG | + | chr4_1:84727344-84727363 | Msa0579880:intron | 30.0% | |
| TAATTTACAGCAGACTTCAT+TGG | - | chr4_1:84727411-84727430 | None:intergenic | 30.0% | |
| TGACTACAAAAATCTCTTTG+TGG | + | chr4_1:84727431-84727450 | Msa0579880:intron | 30.0% | |
| TTTGCAACCACAATAAACTT+TGG | - | chr4_1:84727498-84727517 | None:intergenic | 30.0% | |
| ! | CTTTTCACATATTTAAGCGA+TGG | + | chr4_1:84727543-84727562 | Msa0579880:intron | 30.0% |
| ACAGGGAATGAATTTATAGA+AGG | - | chr4_1:84727599-84727618 | None:intergenic | 30.0% | |
| TCATCGTTAATATGCATACA+GGG | - | chr4_1:84727616-84727635 | None:intergenic | 30.0% | |
| ATCATCGTTAATATGCATAC+AGG | - | chr4_1:84727617-84727636 | None:intergenic | 30.0% | |
| AGTTAGCATTCCAAATTTAG+AGG | + | chr4_1:84727695-84727714 | Msa0579880:intron | 30.0% | |
| ! | AACTTTTCATGAATGCTGAT+GGG | + | chr4_1:84727723-84727742 | Msa0579880:intron | 30.0% |
| !! | TTAATTCTAGTTTGGTCGAA+AGG | - | chr4_1:84728501-84728520 | None:intergenic | 30.0% |
| !!! | CAAACACACGTAGTTTTTTA+AGG | - | chr4_1:84728536-84728555 | None:intergenic | 30.0% |
| !!! | GTTTCAAAATGTGTCGTTTT+AGG | + | chr4_1:84728728-84728747 | Msa0579880:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGAG+AGG | + | chr4_1:84729114-84729133 | Msa0579880:intron | 30.0% |
| !!! | TTTTTTTTTTGTGGTGGAGA+GGG | + | chr4_1:84729115-84729134 | Msa0579880:intron | 30.0% |
| !!! | TTTTAAAATAACGAAGGTCC+GGG | - | chr4_1:84729148-84729167 | None:intergenic | 30.0% |
| TCATCATCTTCAACTTAACT+TGG | + | chr4_1:84729318-84729337 | Msa0579880:intron | 30.0% | |
| GATTGTTGTGTAAATGTGAA+CGG | - | chr4_1:84729403-84729422 | None:intergenic | 30.0% | |
| !!! | AGTGAGGAAAAGTTTTTTGT+GGG | - | chr4_1:84729425-84729444 | None:intergenic | 30.0% |
| !!! | AAGTGAGGAAAAGTTTTTTG+TGG | - | chr4_1:84729426-84729445 | None:intergenic | 30.0% |
| !! | GATTTGTTGATATGAAAGTG+AGG | - | chr4_1:84729441-84729460 | None:intergenic | 30.0% |
| GGGTTGAAATAGAATCTAAA+TGG | - | chr4_1:84729472-84729491 | None:intergenic | 30.0% | |
| ! | TATGTGTTTTATGTACCTTG+GGG | - | chr4_1:84729499-84729518 | None:intergenic | 30.0% |
| CAAAAATGAAAAAGTGGGTA+GGG | - | chr4_1:84729538-84729557 | None:intergenic | 30.0% | |
| !!! | AGCCTTGTTTTTTTTTACTG+TGG | + | chr4_1:84729678-84729697 | Msa0579880:intron | 30.0% |
| TGCCACAGTAAAAAAAAACA+AGG | - | chr4_1:84729683-84729702 | None:intergenic | 30.0% | |
| ! | TCTCATAATTTTGCTTCGTT+AGG | + | chr4_1:84729866-84729885 | Msa0579880:CDS | 30.0% |
| ! | CTCATAATTTTGCTTCGTTA+GGG | + | chr4_1:84729867-84729886 | Msa0579880:CDS | 30.0% |
| AGCTGATAGGATATTCAAAA+TGG | + | chr4_1:84729943-84729962 | Msa0579880:intron | 30.0% | |
| AAAATGGTTACGAGAAATCT+AGG | + | chr4_1:84729959-84729978 | Msa0579880:intron | 30.0% | |
| TAAAATCAATGAGCGAAAAC+GGG | + | chr4_1:84730133-84730152 | Msa0579880:intron | 30.0% | |
| GTTACTATGAAATGTTGTTG+TGG | + | chr4_1:84730282-84730301 | Msa0579880:CDS | 30.0% | |
| ATGAAATGTTGTTGTGGATA+AGG | + | chr4_1:84730288-84730307 | Msa0579880:CDS | 30.0% | |
| TGAAATGTTGTTGTGGATAA+GGG | + | chr4_1:84730289-84730308 | Msa0579880:CDS | 30.0% | |
| TTAACAACGAAGAAAAGATC+CGG | + | chr4_1:84730312-84730331 | Msa0579880:CDS | 30.0% | |
| ! | CAATGTATTGACATATATCC+CGG | - | chr4_1:84730334-84730353 | None:intergenic | 30.0% |
| CAAAAAAATATAGGAACCCA+TGG | - | chr4_1:84730507-84730526 | None:intergenic | 30.0% | |
| ATGGGTGCACAAAAAAATAT+AGG | - | chr4_1:84730516-84730535 | None:intergenic | 30.0% | |
| CAAATGAAAACCATCATGTA+TGG | - | chr4_1:84730535-84730554 | None:intergenic | 30.0% | |
| CATCAGATACAAAAGTTCTA+TGG | + | chr4_1:84730603-84730622 | Msa0579880:intron | 30.0% | |
| ! | TCATGTTTCTAATAAAGCCA+AGG | - | chr4_1:84730680-84730699 | None:intergenic | 30.0% |
| CAGTATAGAAATTATTGTGC+TGG | + | chr4_1:84730759-84730778 | Msa0579880:intron | 30.0% | |
| CGTGTTGAAAAATATAGACA+TGG | + | chr4_1:84730907-84730926 | Msa0579880:CDS | 30.0% | |
| TATTTAAGCTACTCTGTAGA+TGG | + | chr4_1:84731058-84731077 | Msa0579880:intron | 30.0% | |
| TATTTCCAAATCTAGACTGA+CGG | - | chr4_1:84731190-84731209 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTACGGAATATAT+TGG | - | chr4_1:84731365-84731384 | None:intergenic | 30.0% |
| TTAGAATTGAACACAGGATA+TGG | - | chr4_1:84731425-84731444 | None:intergenic | 30.0% | |
| TTAGACTTAGAATTGAACAC+AGG | - | chr4_1:84731431-84731450 | None:intergenic | 30.0% | |
| ! | TTATCTGGAGTATTAATGGA+TGG | + | chr4_1:84731604-84731623 | Msa0579880:intron | 30.0% |
| TGAGGGAACAAAATTATAGA+AGG | - | chr4_1:84731666-84731685 | None:intergenic | 30.0% | |
| ACTTAGCATTCCAAATTTAG+CGG | + | chr4_1:84731763-84731782 | Msa0579880:CDS | 30.0% | |
| TAAGAACAATGCGAAGAAGA+TGG | - | chr4_1:84724101-84724120 | None:intergenic | 35.0% | |
| !! | GCATAGTTTTCTAGCAATAG+GGG | - | chr4_1:84724132-84724151 | None:intergenic | 35.0% |
| !! | GTGCATAGTTTTCTAGCAAT+AGG | - | chr4_1:84724134-84724153 | None:intergenic | 35.0% |
| !! | TGATGGGTTTCTTCATATTG+AGG | - | chr4_1:84724227-84724246 | None:intergenic | 35.0% |
| GTCAGAATGAAAATGGTGAT+GGG | - | chr4_1:84724243-84724262 | None:intergenic | 35.0% | |
| AGTCAGAATGAAAATGGTGA+TGG | - | chr4_1:84724244-84724263 | None:intergenic | 35.0% | |
| GGTTCAAGTCAGAATGAAAA+TGG | - | chr4_1:84724250-84724269 | None:intergenic | 35.0% | |
| TGGAACAAGATTGTGTTTGA+GGG | - | chr4_1:84724279-84724298 | None:intergenic | 35.0% | |
| !!! | TATGTGTTTTTAGTACCTGG+AGG | - | chr4_1:84724302-84724321 | None:intergenic | 35.0% |
| GTTTACTTTAGATGAAGAGG+AGG | + | chr4_1:84724496-84724515 | Msa0579880:intron | 35.0% | |
| TGTGAAATTTACTGTGAGAG+TGG | + | chr4_1:84724570-84724589 | Msa0579880:intron | 35.0% | |
| TGTAGAGAAGGTTAATTGTG+AGG | + | chr4_1:84724704-84724723 | Msa0579880:CDS | 35.0% | |
| GTAGAGAAGGTTAATTGTGA+GGG | + | chr4_1:84724705-84724724 | Msa0579880:CDS | 35.0% | |
| ACTACTACTGTTGATGTGTT+TGG | + | chr4_1:84724915-84724934 | Msa0579880:CDS | 35.0% | |
| AGTTGTGCATAAAGAAGATC+AGG | + | chr4_1:84724985-84725004 | Msa0579880:CDS | 35.0% | |
| GTTGTGCATAAAGAAGATCA+GGG | + | chr4_1:84724986-84725005 | Msa0579880:CDS | 35.0% | |
| TGAAATTGAACTGGGATTAC+CGG | - | chr4_1:84725186-84725205 | None:intergenic | 35.0% | |
| GTTACTATGAAATGTTGCTG+TGG | + | chr4_1:84725213-84725232 | Msa0579880:CDS | 35.0% | |
| ATGAAATGTTGCTGTGGATA+AGG | + | chr4_1:84725219-84725238 | Msa0579880:CDS | 35.0% | |
| TGAAATGTTGCTGTGGATAA+GGG | + | chr4_1:84725220-84725239 | Msa0579880:CDS | 35.0% | |
| TGATGTATTCGCAAATATCC+CGG | - | chr4_1:84725265-84725284 | None:intergenic | 35.0% | |
| TATTTGCGAATACATCACTG+TGG | + | chr4_1:84725268-84725287 | Msa0579880:CDS | 35.0% | |
| GCAGTATCATTACTAACATG+TGG | + | chr4_1:84725404-84725423 | Msa0579880:intron | 35.0% | |
| ACTAACATGTGGCAATTTCA+AGG | + | chr4_1:84725415-84725434 | Msa0579880:intron | 35.0% | |
| !! | TCATCAAAAGCATCATGTGT+AGG | - | chr4_1:84725466-84725485 | None:intergenic | 35.0% |
| ATTCCCACTACATGCTATAT+GGG | - | chr4_1:84725512-84725531 | None:intergenic | 35.0% | |
| TATTCCCACTACATGCTATA+TGG | - | chr4_1:84725513-84725532 | None:intergenic | 35.0% | |
| TAGTGGGAATACTAAATGAC+AGG | + | chr4_1:84725522-84725541 | Msa0579880:intron | 35.0% | |
| !! | CTAAATGACAGGTTCTAAAG+GGG | + | chr4_1:84725533-84725552 | Msa0579880:intron | 35.0% |
| TTGTATTCCAAGTACATTGC+TGG | + | chr4_1:84725652-84725671 | Msa0579880:intron | 35.0% | |
| TGGTTCAAAATTAGTGCATG+TGG | + | chr4_1:84725718-84725737 | Msa0579880:intron | 35.0% | |
| ACTTATCAGAACAATTCTGC+TGG | + | chr4_1:84725747-84725766 | Msa0579880:intron | 35.0% | |
| !! | TCAGTTGATAATAATGGAGG+TGG | + | chr4_1:84726014-84726033 | Msa0579880:intron | 35.0% |
| !! | GACGTCACTTATTTCTAGAA+TGG | - | chr4_1:84726481-84726500 | None:intergenic | 35.0% |
| TAGAAATAAGTGACGTCAGA+CGG | + | chr4_1:84726484-84726503 | Msa0579880:intron | 35.0% | |
| !!! | CGCTTACTTTATTTTCGTGT+TGG | - | chr4_1:84726547-84726566 | None:intergenic | 35.0% |
| AGCACCTATAGTAGAAAAGA+TGG | + | chr4_1:84726657-84726676 | Msa0579880:intron | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | + | chr4_1:84726674-84726693 | Msa0579880:intron | 35.0% | |
| AAAATAGGCTTAGGTGGTTT+GGG | + | chr4_1:84726683-84726702 | Msa0579880:intron | 35.0% | |
| AAAGAGAAGAGTAGATCACA+TGG | + | chr4_1:84726711-84726730 | Msa0579880:intron | 35.0% | |
| AGTCAGATGAAAAGAGGTAA+AGG | + | chr4_1:84726739-84726758 | Msa0579880:intron | 35.0% | |
| ! | TAATGAGTTGGATCCCAATA+TGG | + | chr4_1:84726798-84726817 | Msa0579880:intron | 35.0% |
| ! | TGGTAAATGTTGATAGGGTA+AGG | + | chr4_1:84727045-84727064 | Msa0579880:intron | 35.0% |
| GGAAATATGTGCAAATGAGT+AGG | + | chr4_1:84727100-84727119 | Msa0579880:intron | 35.0% | |
| TGAGTAGGGTTCAAATGATA+AGG | + | chr4_1:84727115-84727134 | Msa0579880:intron | 35.0% | |
| TTGGCGATTAGAATTGAACA+TGG | - | chr4_1:84727392-84727411 | None:intergenic | 35.0% | |
| TCGTGTTCCAAAGTTTATTG+TGG | + | chr4_1:84727488-84727507 | Msa0579880:intron | 35.0% | |
| GGTTGCAAATGCACTAATTT+AGG | + | chr4_1:84727509-84727528 | Msa0579880:intron | 35.0% | |
| AAGTTCCTCACCTCTAAATT+TGG | - | chr4_1:84727708-84727727 | None:intergenic | 35.0% | |
| ! | GAACTTTTCATGAATGCTGA+TGG | + | chr4_1:84727722-84727741 | Msa0579880:intron | 35.0% |
| GAAAAACCCATGATGAACAT+GGG | + | chr4_1:84727745-84727764 | Msa0579880:intron | 35.0% | |
| AACACTTGCAAACTGTTGAA+AGG | - | chr4_1:84727782-84727801 | None:intergenic | 35.0% | |
| CAACAGTTTGCAAGTGTTTA+TGG | + | chr4_1:84727784-84727803 | Msa0579880:intron | 35.0% | |
| !!! | TTTTTTGGGACATGACAAAC+AGG | + | chr4_1:84728621-84728640 | Msa0579880:intron | 35.0% |
| ! | ATGTTGTTTAGTGAGGACAA+AGG | - | chr4_1:84728672-84728691 | None:intergenic | 35.0% |
| ! | AGTTGTGATGTTGTTTAGTG+AGG | - | chr4_1:84728679-84728698 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr4_1:84728858-84728877 | Msa0579880:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+TGG | + | chr4_1:84728862-84728881 | Msa0579880:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_1:84728968-84728987 | Msa0579880:intron | 35.0% |
| CCTAAACAGTATGTACTAGA+CGG | - | chr4_1:84729087-84729106 | None:intergenic | 35.0% | |
| ! | TTTAAAATAACGAAGGTCCG+GGG | - | chr4_1:84729147-84729166 | None:intergenic | 35.0% |
| GCTACATATACCTTGAAGTT+GGG | + | chr4_1:84729248-84729267 | Msa0579880:intron | 35.0% | |
| ! | GAATGCGATTTTGTAGGAAT+AGG | - | chr4_1:84729278-84729297 | None:intergenic | 35.0% |
| !! | TTCTGAGAATGCGATTTTGT+AGG | - | chr4_1:84729284-84729303 | None:intergenic | 35.0% |
| GCAAAAATGAAAAAGTGGGT+AGG | - | chr4_1:84729539-84729558 | None:intergenic | 35.0% | |
| ! | TTGTTTACCTTTTGTTGCAG+AGG | + | chr4_1:84729601-84729620 | Msa0579880:intron | 35.0% |
| GATAAATCCTCTGCAACAAA+AGG | - | chr4_1:84729611-84729630 | None:intergenic | 35.0% | |
| TGTTAAATTCACTGTGAGAC+TGG | + | chr4_1:84729654-84729673 | Msa0579880:intron | 35.0% | |
| !!! | TTTTTTACTGTGGCATGATG+AGG | + | chr4_1:84729688-84729707 | Msa0579880:intron | 35.0% |
| !! | TTATTGCTGTTTCTCTCTGT+AGG | + | chr4_1:84729761-84729780 | Msa0579880:intron | 35.0% |
| TTGATGCTGAAGAAAAAGTG+AGG | + | chr4_1:84729822-84729841 | Msa0579880:CDS | 35.0% | |
| ! | AATTTTGCTTCGTTAGGGAA+TGG | + | chr4_1:84729872-84729891 | Msa0579880:CDS | 35.0% |
| ! | ATTTTGCTTCGTTAGGGAAT+GGG | + | chr4_1:84729873-84729892 | Msa0579880:CDS | 35.0% |
| TAATGTTTGAAGACACTCGT+AGG | + | chr4_1:84729915-84729934 | Msa0579880:intron | 35.0% | |
| AATGTTTGAAGACACTCGTA+GGG | + | chr4_1:84729916-84729935 | Msa0579880:intron | 35.0% | |
| TAACAACGAAGAAAAGATCC+GGG | + | chr4_1:84730313-84730332 | Msa0579880:CDS | 35.0% | |
| ATACTGCTAAAACTATGCAG+TGG | - | chr4_1:84730463-84730482 | None:intergenic | 35.0% | |
| ATTAACATGTGACCATTCCA+TGG | + | chr4_1:84730487-84730506 | Msa0579880:intron | 35.0% | |
| TTAACATGTGACCATTCCAT+GGG | + | chr4_1:84730488-84730507 | Msa0579880:intron | 35.0% | |
| AAATATAGGAACCCATGGAA+TGG | - | chr4_1:84730502-84730521 | None:intergenic | 35.0% | |
| GCATCAAGTAAAAGTAGAAG+GGG | - | chr4_1:84730658-84730677 | None:intergenic | 35.0% | |
| GGCATCAAGTAAAAGTAGAA+GGG | - | chr4_1:84730659-84730678 | None:intergenic | 35.0% | |
| AGGCATCAAGTAAAAGTAGA+AGG | - | chr4_1:84730660-84730679 | None:intergenic | 35.0% | |
| !! | TCTACTTTTACTTGATGCCT+TGG | + | chr4_1:84730660-84730679 | Msa0579880:intron | 35.0% |
| ! | TTGTAAAAGTGGTCGCATTT+TGG | + | chr4_1:84730883-84730902 | Msa0579880:CDS | 35.0% |
| ! | AGATGCGGAGAATTTACTTT+TGG | + | chr4_1:84730997-84731016 | Msa0579880:CDS | 35.0% |
| TACTCTGTAGATGGTTATAG+AGG | + | chr4_1:84731067-84731086 | Msa0579880:intron | 35.0% | |
| ! | ATTTTCCGTCAGTCTAGATT+TGG | + | chr4_1:84731182-84731201 | Msa0579880:intron | 35.0% |
| AAAGCTTAGAATCTTCGCAA+AGG | + | chr4_1:84731299-84731318 | Msa0579880:intron | 35.0% | |
| TGTAGCATTGCTGAATAAGT+TGG | + | chr4_1:84731495-84731514 | Msa0579880:intron | 35.0% | |
| CTAACTATCACATAAAGCGT+TGG | - | chr4_1:84731545-84731564 | None:intergenic | 35.0% | |
| GATAGTTAGTGCACTAACTT+AGG | + | chr4_1:84731556-84731575 | Msa0579880:intron | 35.0% | |
| TTGTCAGTAATATGCACTGA+GGG | - | chr4_1:84731683-84731702 | None:intergenic | 35.0% | |
| TTTGTCAGTAATATGCACTG+AGG | - | chr4_1:84731684-84731703 | None:intergenic | 35.0% | |
| AAGAAGATGGTGAATCTGTG+CGG | - | chr4_1:84724088-84724107 | None:intergenic | 40.0% | |
| ! | GATTGTGTTTGAGGGTTGAT+AGG | - | chr4_1:84724271-84724290 | None:intergenic | 40.0% |
| GTGGAACAAGATTGTGTTTG+AGG | - | chr4_1:84724280-84724299 | None:intergenic | 40.0% | |
| CCAGAAATGAAAATGTGGGT+CGG | - | chr4_1:84724342-84724361 | None:intergenic | 40.0% | |
| !! | GGGAGTTGATGATGAAGAAA+AGG | + | chr4_1:84724725-84724744 | Msa0579880:CDS | 40.0% |
| AGAAAAGGAGAAAAGGGTTG+TGG | + | chr4_1:84724740-84724759 | Msa0579880:CDS | 40.0% | |
| TGATGAATGTCTCGTATCAG+CGG | - | chr4_1:84724771-84724790 | None:intergenic | 40.0% | |
| TCCATTTGTGTTTCCTCTCA+CGG | - | chr4_1:84724827-84724846 | None:intergenic | 40.0% | |
| ! | TGGATTTTCAAAGACACTGG+TGG | + | chr4_1:84724843-84724862 | Msa0579880:CDS | 40.0% |
| TGTTGATGTGTTTGGCTACT+TGG | + | chr4_1:84724923-84724942 | Msa0579880:CDS | 40.0% | |
| GTTGATGTGTTTGGCTACTT+GGG | + | chr4_1:84724924-84724943 | Msa0579880:CDS | 40.0% | |
| ! | ACTGGCGTGAAAGAGTATAA+TGG | + | chr4_1:84724954-84724973 | Msa0579880:CDS | 40.0% |
| TCCCAGTTCAATTTCACGAT+TGG | + | chr4_1:84725190-84725209 | Msa0579880:CDS | 40.0% | |
| CCCAATCGTGAAATTGAACT+GGG | - | chr4_1:84725194-84725213 | None:intergenic | 40.0% | |
| CCCAGTTCAATTTCACGATT+GGG | + | chr4_1:84725191-84725210 | Msa0579880:CDS | 40.0% | |
| ACCCAATCGTGAAATTGAAC+TGG | - | chr4_1:84725195-84725214 | None:intergenic | 40.0% | |
| AAAGACACTTCTGCTTTACG+AGG | + | chr4_1:84725299-84725318 | Msa0579880:CDS | 40.0% | |
| ! | GCACTAATTTTGAACCACCA+AGG | - | chr4_1:84725715-84725734 | None:intergenic | 40.0% |
| CATCCAAAATCTGTGTCTTG+CGG | - | chr4_1:84725833-84725852 | None:intergenic | 40.0% | |
| ! | AGAAGCGGAGAGTTTACTTT+TGG | + | chr4_1:84725941-84725960 | Msa0579880:intron | 40.0% |
| !! | CTTTTGGATTTGAGAGCATG+TGG | + | chr4_1:84725957-84725976 | Msa0579880:intron | 40.0% |
| ! | TGCTACAACATATTGGTGTC+AGG | - | chr4_1:84726345-84726364 | None:intergenic | 40.0% |
| ! | TGTTTTATGGTACGGAGTGT+TGG | + | chr4_1:84726510-84726529 | Msa0579880:intron | 40.0% |
| !! | GTTTTATGGTACGGAGTGTT+GGG | + | chr4_1:84726511-84726530 | Msa0579880:intron | 40.0% |
| CACATATGAGTATGTTGCGT+TGG | + | chr4_1:84726570-84726589 | Msa0579880:intron | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | + | chr4_1:84726603-84726622 | Msa0579880:intron | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | + | chr4_1:84726677-84726696 | Msa0579880:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | + | chr4_1:84726682-84726701 | Msa0579880:intron | 40.0% | |
| ! | TGTTGTCGTTGTTGTTGTTG+TGG | + | chr4_1:84726890-84726909 | Msa0579880:intron | 40.0% |
| AATCCTTGAGAATGGAGAAG+AGG | + | chr4_1:84726946-84726965 | Msa0579880:intron | 40.0% | |
| TTTCCTCTTCTCCATTCTCA+AGG | - | chr4_1:84726952-84726971 | None:intergenic | 40.0% | |
| AGAATGGAGAAGAGGAAAGA+TGG | + | chr4_1:84726954-84726973 | Msa0579880:intron | 40.0% | |
| AGTTCATAAAAGAGTGGTGG+AGG | + | chr4_1:84727013-84727032 | Msa0579880:intron | 40.0% | |
| ! | AGTGGTGGAGGAAAAAGTTA+TGG | + | chr4_1:84727025-84727044 | Msa0579880:intron | 40.0% |
| AGGGTTCAAATGATAAGGAG+TGG | + | chr4_1:84727120-84727139 | Msa0579880:intron | 40.0% | |
| TCAAATGATAAGGAGTGGTC+AGG | + | chr4_1:84727125-84727144 | Msa0579880:intron | 40.0% | |
| CAAATGATAAGGAGTGGTCA+GGG | + | chr4_1:84727126-84727145 | Msa0579880:intron | 40.0% | |
| AAATGATAAGGAGTGGTCAG+GGG | + | chr4_1:84727127-84727146 | Msa0579880:intron | 40.0% | |
| !! | CTTTTGGCTATGGAGCAAAT+TGG | - | chr4_1:84727159-84727178 | None:intergenic | 40.0% |
| TATCAACAATGAGCCAGACT+TGG | + | chr4_1:84727276-84727295 | Msa0579880:intron | 40.0% | |
| TAATTTCTGACCACCAAGTC+TGG | - | chr4_1:84727292-84727311 | None:intergenic | 40.0% | |
| TTCTAGTGCCAATACTGAGT+AGG | - | chr4_1:84727355-84727374 | None:intergenic | 40.0% | |
| CTTTGTGGCCATACTGAATA+AGG | + | chr4_1:84727446-84727465 | Msa0579880:intron | 40.0% | |
| CAACACCACCTTATTCAGTA+TGG | - | chr4_1:84727457-84727476 | None:intergenic | 40.0% | |
| TTATAGAAGGTTAGGCCTTC+TGG | - | chr4_1:84727586-84727605 | None:intergenic | 40.0% | |
| GCATTCCAAATTTAGAGGTG+AGG | + | chr4_1:84727700-84727719 | Msa0579880:intron | 40.0% | |
| GGAAAAACCCATGATGAACA+TGG | + | chr4_1:84727744-84727763 | Msa0579880:intron | 40.0% | |
| ! | GGATGGAGTAATTTGTACGT+GGG | - | chr4_1:84728708-84728727 | None:intergenic | 40.0% |
| !!! | ACGACACATTTTGAAACGGA+TGG | - | chr4_1:84728725-84728744 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_1:84728972-84728991 | Msa0579880:intron | 40.0% |
| CCGTCTAGTACATACTGTTT+AGG | + | chr4_1:84729084-84729103 | Msa0579880:intron | 40.0% | |
| GGCTACATATACCTTGAAGT+TGG | + | chr4_1:84729247-84729266 | Msa0579880:intron | 40.0% | |
| AATAGGTCAACCCAACTTCA+AGG | - | chr4_1:84729261-84729280 | None:intergenic | 40.0% | |
| !! | GTACATAGTTTTCTGGCAGA+AGG | - | chr4_1:84729365-84729384 | None:intergenic | 40.0% |
| GCCAGAAAACTATGTACACT+CGG | + | chr4_1:84729368-84729387 | Msa0579880:intron | 40.0% | |
| TTTATGTACCTTGGGGAGAA+GGG | - | chr4_1:84729492-84729511 | None:intergenic | 40.0% | |
| ! | TTTTATGTACCTTGGGGAGA+AGG | - | chr4_1:84729493-84729512 | None:intergenic | 40.0% |
| ! | CGAGTGTTCGAATGTGTTTT+CGG | + | chr4_1:84729716-84729735 | Msa0579880:intron | 40.0% |
| TTATGAGAATCTAGCACCTC+TGG | - | chr4_1:84729854-84729873 | None:intergenic | 40.0% | |
| GAAATCTAGGAACACTGCTT+CGG | + | chr4_1:84729972-84729991 | Msa0579880:intron | 40.0% | |
| TACTCTTTCAGACCTAGTTC+TGG | - | chr4_1:84730021-84730040 | None:intergenic | 40.0% | |
| GATCCAATCGTGCATAAAGA+AGG | + | chr4_1:84730050-84730069 | Msa0579880:CDS | 40.0% | |
| TAGCCTTCTTTATGCACGAT+TGG | - | chr4_1:84730056-84730075 | None:intergenic | 40.0% | |
| AATCGTGCATAAAGAAGGCT+AGG | + | chr4_1:84730055-84730074 | Msa0579880:CDS | 40.0% | |
| ATCGTGCATAAAGAAGGCTA+GGG | + | chr4_1:84730056-84730075 | Msa0579880:CDS | 40.0% | |
| CAGCTAGAGAGAAAACTTGT+CGG | + | chr4_1:84730159-84730178 | Msa0579880:intron | 40.0% | |
| TCCCAGTTCAATTTCACGAT+TGG | + | chr4_1:84725190-84725209 | Msa0579880:CDS | 40.0% | |
| CCCAATCGTGAAATTGAACT+GGG | - | chr4_1:84725194-84725213 | None:intergenic | 40.0% | |
| CCCAGTTCAATTTCACGATT+GGG | + | chr4_1:84725191-84725210 | Msa0579880:CDS | 40.0% | |
| ACCCAATCGTGAAATTGAAC+TGG | - | chr4_1:84725195-84725214 | None:intergenic | 40.0% | |
| ! | TTTTGTGCACCCATACATGA+TGG | + | chr4_1:84730522-84730541 | Msa0579880:intron | 40.0% |
| TGCTAGTGAGATGTTCAATG+TGG | + | chr4_1:84730569-84730588 | Msa0579880:intron | 40.0% | |
| TTGTATTCCAAGTACGTTGC+TGG | + | chr4_1:84730724-84730743 | Msa0579880:intron | 40.0% | |
| GAAATTATTGTGCTGGGCTT+TGG | + | chr4_1:84730766-84730785 | Msa0579880:intron | 40.0% | |
| GAGTTTACAATCACTGCATG+TGG | + | chr4_1:84730788-84730807 | Msa0579880:intron | 40.0% | |
| ! | AGACATGGAGAAGCATACAT+CGG | + | chr4_1:84730922-84730941 | Msa0579880:CDS | 40.0% |
| ! | CTTTTGGATTTGACAGTACG+TGG | + | chr4_1:84731013-84731032 | Msa0579880:CDS | 40.0% |
| TCTGTAGATGGTTATAGAGG+TGG | + | chr4_1:84731070-84731089 | Msa0579880:intron | 40.0% | |
| TTCTAAGTCTAACTGCCAAG+CGG | + | chr4_1:84731439-84731458 | Msa0579880:intron | 40.0% | |
| AATTTATAGCAGACTCCGCT+TGG | - | chr4_1:84731457-84731476 | None:intergenic | 40.0% | |
| TAAACCTGTTATCCTCCAGA+AGG | + | chr4_1:84731629-84731648 | Msa0579880:intron | 40.0% | |
| AAGGTAATACTTAGGCCTTC+TGG | - | chr4_1:84731647-84731666 | None:intergenic | 40.0% | |
| AAGTTCCTCACCGCTAAATT+TGG | - | chr4_1:84731776-84731795 | None:intergenic | 40.0% | |
| ATCTGTGCGGTTTGTGAAGT+AGG | - | chr4_1:84724075-84724094 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTAGTACCTGGAGG+TGG | - | chr4_1:84724299-84724318 | None:intergenic | 45.0% |
| ! | CCGACCCACATTTTCATTTC+TGG | + | chr4_1:84724339-84724358 | Msa0579880:intron | 45.0% |
| GATGAAGAGGAGGATTTGTC+TGG | + | chr4_1:84724506-84724525 | Msa0579880:intron | 45.0% | |
| !! | GGCTCTGATTTTCAGCTTTC+TGG | + | chr4_1:84724527-84724546 | Msa0579880:CDS | 45.0% |
| ATTCTCCACTCTTCTCATCG+TGG | - | chr4_1:84724617-84724636 | None:intergenic | 45.0% | |
| CTGTAGCCTCTTTGTAGAGA+AGG | + | chr4_1:84724692-84724711 | Msa0579880:CDS | 45.0% | |
| CCATTTGTGTTTCCTCTCAC+GGG | - | chr4_1:84724826-84724845 | None:intergenic | 45.0% | |
| ACACTTCTGCTTTACGAGGT+AGG | + | chr4_1:84725303-84725322 | Msa0579880:intron | 45.0% | |
| CCACCCATATAGCATGTAGT+GGG | + | chr4_1:84725506-84725525 | Msa0579880:intron | 45.0% | |
| CTAGATGCCAGCAATGTACT+TGG | - | chr4_1:84725662-84725681 | None:intergenic | 45.0% | |
| AAAGTGATTGTTCCAGGCCT+TGG | + | chr4_1:84725695-84725714 | Msa0579880:intron | 45.0% | |
| ! | AATTTTGAACCACCAAGGCC+TGG | - | chr4_1:84725710-84725729 | None:intergenic | 45.0% |
| ! | TGACCGCAAGACACAGATTT+TGG | + | chr4_1:84725827-84725846 | Msa0579880:intron | 45.0% |
| GTGTGCTTGCCACATTTAAG+AGG | - | chr4_1:84726314-84726333 | None:intergenic | 45.0% | |
| AAATGTGGCAAGCACACTAC+AGG | + | chr4_1:84726317-84726336 | Msa0579880:intron | 45.0% | |
| ! | GACGGCGATGTTTTATGGTA+CGG | + | chr4_1:84726502-84726521 | Msa0579880:intron | 45.0% |
| !! | AGTATGTTGCGTTGGTTGAG+TGG | + | chr4_1:84726578-84726597 | Msa0579880:intron | 45.0% |
| GTTGAGTGGTAAGACTAGAC+AGG | + | chr4_1:84726592-84726611 | Msa0579880:intron | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | + | chr4_1:84726597-84726616 | Msa0579880:intron | 45.0% | |
| CCTCAACTCTCTCTCTCTAA+TGG | - | chr4_1:84726636-84726655 | None:intergenic | 45.0% | |
| CCATTAGAGAGAGAGAGTTG+AGG | + | chr4_1:84726633-84726652 | Msa0579880:intron | 45.0% | |
| GAGAAGAGTAGATCACATGG+AGG | + | chr4_1:84726714-84726733 | Msa0579880:intron | 45.0% | |
| GAGGAGAGTCAGATGAAAAG+AGG | + | chr4_1:84726733-84726752 | Msa0579880:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4_1:84726867-84726886 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4_1:84726868-84726887 | None:intergenic | 45.0% |
| ! | GTTGATAGGGTAAGGAACAG+AGG | + | chr4_1:84727053-84727072 | Msa0579880:intron | 45.0% |
| TAAGGAACAGAGGAAACACC+TGG | + | chr4_1:84727063-84727082 | Msa0579880:intron | 45.0% | |
| AATGATAAGGAGTGGTCAGG+GGG | + | chr4_1:84727128-84727147 | Msa0579880:intron | 45.0% | |
| GAAAACAAAGTCAGGGGAGA+TGG | + | chr4_1:84727246-84727265 | Msa0579880:intron | 45.0% | |
| TGTGGCCATACTGAATAAGG+TGG | + | chr4_1:84727449-84727468 | Msa0579880:intron | 45.0% | |
| CTAACCTGTTATCCTCCAGA+AGG | + | chr4_1:84727568-84727587 | Msa0579880:intron | 45.0% | |
| AAACCCATGATGAACATGGG+TGG | + | chr4_1:84727748-84727767 | Msa0579880:intron | 45.0% | |
| TTGCCACCCATGTTCATCAT+GGG | - | chr4_1:84727754-84727773 | None:intergenic | 45.0% | |
| ATTGCCACCCATGTTCATCA+TGG | - | chr4_1:84727755-84727774 | None:intergenic | 45.0% | |
| AGACAAGAACGCCAATCTAG+TGG | + | chr4_1:84727836-84727855 | Msa0579880:intron | 45.0% | |
| AAGAACGCCAATCTAGTGGT+GGG | + | chr4_1:84727840-84727859 | Msa0579880:intron | 45.0% | |
| ! | CGGATGGAGTAATTTGTACG+TGG | - | chr4_1:84728709-84728728 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_1:84728971-84728990 | Msa0579880:intron | 45.0% |
| ! | GCCGAGTGTACATAGTTTTC+TGG | - | chr4_1:84729372-84729391 | None:intergenic | 45.0% |
| TATTTCAACCCTTCTCCCCA+AGG | + | chr4_1:84729481-84729500 | Msa0579880:intron | 45.0% | |
| TCTCTGTAGGCAAAGCTCAT+AGG | + | chr4_1:84729774-84729793 | Msa0579880:intron | 45.0% | |
| CTCTGTAGGCAAAGCTCATA+GGG | + | chr4_1:84729775-84729794 | Msa0579880:intron | 45.0% | |
| GCTCATAGGGTAAAGAAGCT+TGG | + | chr4_1:84729788-84729807 | Msa0579880:CDS | 45.0% | |
| ! | AAAAGTGAGGAGCATACCAG+AGG | + | chr4_1:84729835-84729854 | Msa0579880:CDS | 45.0% |
| AAAGACACTTCTGCTCTACG+AGG | + | chr4_1:84730368-84730387 | Msa0579880:CDS | 45.0% | |
| TGCAGTGGATGTTCGTACAT+AGG | - | chr4_1:84730448-84730467 | None:intergenic | 45.0% | |
| GCAGTAGCCTTCCTAAGAAT+TGG | - | chr4_1:84730970-84730989 | None:intergenic | 45.0% | |
| ATTCTTAGGAAGGCTACTGC+TGG | + | chr4_1:84730970-84730989 | Msa0579880:CDS | 45.0% | |
| GTAATACTTAGGCCTTCTGG+AGG | - | chr4_1:84731644-84731663 | None:intergenic | 45.0% | |
| GCATTCCAAATTTAGCGGTG+AGG | + | chr4_1:84731768-84731787 | Msa0579880:CDS | 45.0% | |
| !!! | TATATAATAATACTTTTATA+TGG | - | chr4_1:84728168-84728187 | None:intergenic | 5.0% |
| CACAATCTTGTTCCACCTCC+AGG | + | chr4_1:84724284-84724303 | Msa0579880:CDS | 50.0% | |
| GTGTACCACGATGAGAAGAG+TGG | + | chr4_1:84724609-84724628 | Msa0579880:intron | 50.0% | |
| CCCGTGAGAGGAAACACAAA+TGG | + | chr4_1:84724823-84724842 | Msa0579880:CDS | 50.0% | |
| ACTCTTTCACGCCAGTGTCT+CGG | - | chr4_1:84724950-84724969 | None:intergenic | 50.0% | |
| GCCACCCATATAGCATGTAG+TGG | + | chr4_1:84725505-84725524 | Msa0579880:intron | 50.0% | |
| CCCACTACATGCTATATGGG+TGG | - | chr4_1:84725509-84725528 | None:intergenic | 50.0% | |
| GCAGTAGCCTTCCCAATGAT+TGG | - | chr4_1:84725914-84725933 | None:intergenic | 50.0% | |
| ATCATTGGGAAGGCTACTGC+TGG | + | chr4_1:84725914-84725933 | Msa0579880:intron | 50.0% | |
| GCTACTGCTGGAATCAGAAG+CGG | + | chr4_1:84725926-84725945 | Msa0579880:intron | 50.0% | |
| ! | CGTCAGACGGCGATGTTTTA+TGG | + | chr4_1:84726497-84726516 | Msa0579880:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_1:84726863-84726882 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4_1:84726869-84726888 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4_1:84726866-84726885 | Msa0579880:intron | 50.0% | |
| CAACAATGAGCCAGACTTGG+TGG | + | chr4_1:84727279-84727298 | Msa0579880:intron | 50.0% | |
| ! | TAGGCCTTCTGGAGGATAAC+AGG | - | chr4_1:84727575-84727594 | None:intergenic | 50.0% |
| TAGAAGGTTAGGCCTTCTGG+AGG | - | chr4_1:84727583-84727602 | None:intergenic | 50.0% | |
| CAAGAACGCCAATCTAGTGG+TGG | + | chr4_1:84727839-84727858 | Msa0579880:intron | 50.0% | |
| AAGAGAGCCCACCACTAGAT+TGG | - | chr4_1:84727850-84727869 | None:intergenic | 50.0% | |
| GGCACAAGTTAACTGTCTCG+AGG | + | chr4_1:84729226-84729245 | Msa0579880:intron | 50.0% | |
| CTCGTAGGGTACAAGCTGAT+AGG | + | chr4_1:84729930-84729949 | Msa0579880:intron | 50.0% | |
| GACTGCTTGAGTCCAGAACT+AGG | + | chr4_1:84730006-84730025 | Msa0579880:intron | 50.0% | |
| ACACTTCTGCTCTACGAGGT+AGG | + | chr4_1:84730372-84730391 | Msa0579880:intron | 50.0% | |
| GCTACTGCTGGAATCAGATG+CGG | + | chr4_1:84730982-84731001 | Msa0579880:CDS | 50.0% | |
| ! | TAGGCCTTCTGGAGGATAAC+AGG | - | chr4_1:84727575-84727594 | None:intergenic | 50.0% |
| GGAATGAATCGTCCCGTGAG+AGG | + | chr4_1:84724811-84724830 | Msa0579880:CDS | 55.0% | |
| ! | CTGGTGGTGAACGATCTGAC+CGG | + | chr4_1:84724859-84724878 | Msa0579880:CDS | 55.0% |
| GTGATTGTTCCAGGCCTTGG+TGG | + | chr4_1:84725698-84725717 | Msa0579880:intron | 55.0% | |
| ! | GGTGTATTTGCGGACTGTCC+AGG | + | chr4_1:84726108-84726127 | Msa0579880:intron | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr4_1:84726855-84726874 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr4_1:84726854-84726873 | Msa0579880:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr4_1:84726855-84726874 | Msa0579880:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_1:84726861-84726880 | Msa0579880:intron | 55.0% | |
| GGAACAGAGGAAACACCTGG+AGG | + | chr4_1:84727066-84727085 | Msa0579880:intron | 55.0% | |
| AGAGGAAACACCTGGAGGAG+AGG | + | chr4_1:84727071-84727090 | Msa0579880:intron | 55.0% | |
| AAACACCTGGAGGAGAGGCA+AGG | + | chr4_1:84727076-84727095 | Msa0579880:intron | 55.0% | |
| ! | GGAATGGGAAAGCACGTGAG+AGG | + | chr4_1:84729888-84729907 | Msa0579880:intron | 55.0% |
| CGTGATGCCAGCAACGTACT+TGG | - | chr4_1:84730734-84730753 | None:intergenic | 55.0% | |
| GGCTACTTGGGCCGAGACAC+TGG | + | chr4_1:84724936-84724955 | Msa0579880:CDS | 65.0% | |
| CACCTGGAGGAGAGGCAAGG+CGG | + | chr4_1:84727079-84727098 | Msa0579880:intron | 65.0% | |
| TTCCGCCTTGCCTCTCCTCC+AGG | - | chr4_1:84727084-84727103 | None:intergenic | 65.0% | |
| GGTGGAGAGGGTTCGAACCC+CGG | + | chr4_1:84729127-84729146 | Msa0579880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84723942 | 84731802 | 84723942 | ID=Msa0579880;Name=Msa0579880 |
| chr4_1 | mRNA | 84723942 | 84731802 | 84723942 | ID=Msa0579880-mRNA-1;Parent=Msa0579880;Name=Msa0579880-mRNA-1;_AED=0.35;_eAED=0.35;_QI=180|0.12|0.22|0.88|1|1|9|0|503 |
| chr4_1 | exon | 84723942 | 84724305 | 84723942 | ID=Msa0579880-mRNA-1:exon:31054;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84724507 | 84724560 | 84724507 | ID=Msa0579880-mRNA-1:exon:31055;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84724676 | 84725320 | 84724676 | ID=Msa0579880-mRNA-1:exon:31056;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84729621 | 84729644 | 84729621 | ID=Msa0579880-mRNA-1:exon:31057;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84729783 | 84729902 | 84729783 | ID=Msa0579880-mRNA-1:exon:31058;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84730022 | 84730114 | 84730022 | ID=Msa0579880-mRNA-1:exon:31059;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84730252 | 84730389 | 84730252 | ID=Msa0579880-mRNA-1:exon:31060;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84730864 | 84731034 | 84730864 | ID=Msa0579880-mRNA-1:exon:31061;Parent=Msa0579880-mRNA-1 |
| chr4_1 | exon | 84731720 | 84731802 | 84731720 | ID=Msa0579880-mRNA-1:exon:31062;Parent=Msa0579880-mRNA-1 |
| chr4_1 | five_prime_UTR | 84723942 | 84724121 | 84723942 | ID=Msa0579880-mRNA-1:five_prime_utr;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84724122 | 84724305 | 84724122 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84724507 | 84724560 | 84724507 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84724676 | 84725320 | 84724676 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84729621 | 84729644 | 84729621 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84729783 | 84729902 | 84729783 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84730022 | 84730114 | 84730022 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84730252 | 84730389 | 84730252 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84730864 | 84731034 | 84730864 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| chr4_1 | CDS | 84731720 | 84731802 | 84731720 | ID=Msa0579880-mRNA-1:cds;Parent=Msa0579880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
