AlfalfaGEDB | Msa1179970

M. sativa cultivar zhongmu-4 / Msa1179970

KEGG: K00262
GO: GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179970	XP_013444255.1	98.491	265	4	0	1	265	1	265	0.0	547

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179970	sp\|P31026\|DHE4_CORGL	56.061	66	27	1	202	265	15	80	2.60e-16	82.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1179970	-0.805828	1.105427e-49	-8.615850e-47
Msa0001590	Msa1179970	0.809507	1.828596e-50	-8.615850e-47
Msa0003700	Msa1179970	0.819594	1.069953e-52	-8.615850e-47
Msa0007080	Msa1179970	0.800959	1.128372e-48	-8.615850e-47
Msa0007660	Msa1179970	0.826374	2.810037e-54	-8.615850e-47
Msa0008290	Msa1179970	0.818450	1.948363e-52	-8.615850e-47
Msa0008340	Msa1179970	0.840571	8.027691e-58	-8.615850e-47
Msa0008670	Msa1179970	0.807477	4.959428e-50	-8.615850e-47
Msa0009760	Msa1179970	0.805097	1.573849e-49	-8.615850e-47
Msa0011250	Msa1179970	0.800031	1.744310e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179970	MtrunA17_Chr8g0341541	98.491	265	4	0	1	265	1	265	0.0	547
Msa1179970	MtrunA17_Chr8g0341561	73.626	91	12	2	152	230	1	91	7.12e-35	121
Msa1179970	MtrunA17_Chr8g0341571	62.745	102	16	2	1	102	1	80	1.51e-32	115
Msa1179970	MtrunA17_Chr1g0154541	74.648	71	18	0	117	187	19	89	3.89e-32	114
Msa1179970	MtrunA17_Chr1g0154551	74.648	71	16	1	1	71	1	69	2.76e-29	106

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179970	AT1G51720.4	78.113	265	58	1	265	1	265	7.33e-149	426
Msa1179970	AT1G51720.2	78.113	265	58	1	265	1	265	6.36e-148	427
Msa1179970	AT1G51720.1	78.113	265	58	1	265	1	265	2.14e-147	427
Msa1179970	AT1G51720.3	78.113	265	58	1	265	1	265	2.14e-147	427

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Find 178 sgRNAs with CRISPR-Local

Find 597 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCGAAGAAATCCTTA+TGG	0.334740	8_1:+13718308	Msa1179970:CDS
AAACGAATGCCACCTCTACA+TGG	0.505421	8_1:-13719727	None:intergenic
AAAGCATTAATCAGATTCTA+GGG	0.444267	8_1:+13723415	Msa1179970:intron
AAAGGCATCACTTGGTTGTG+AGG	0.572466	8_1:+13717973	Msa1179970:CDS
AAAGGGCAAAAGTGATAATG+AGG	0.578064	8_1:+13721179	Msa1179970:three_prime_UTR
AAAGTGATAAACTTGAAAAG+TGG	0.474708	8_1:-13716944	None:intergenic
AAATTAGGAGGTGCAGCTGG+TGG	0.637075	8_1:+13721141	Msa1179970:three_prime_UTR
AACATCGAAGAAATCCTTAT+GGG	0.456133	8_1:+13718309	Msa1179970:CDS
AACTATTATTATGTTCTTCG+AGG	0.452851	8_1:-13718364	None:intergenic
AAGCAAAACCATGGACAGAA+AGG	0.550979	8_1:+13723649	Msa1179970:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACTTTCTTTGAATTCTCA+AGG	+	chr8_1:13716960-13716979	Msa1179970:five_prime_UTR	30.0%
TGTGATGAAATTAAGCTTCT+GGG	+	chr8_1:13716994-13717013	Msa1179970:intron	30.0%
TTTGATCAGAGAAAGAATTG+GGG	+	chr8_1:13717329-13717348	Msa1179970:intron	30.0%
AGTGTCTATAGTAGAAAAGA+TGG	+	chr8_1:13717353-13717372	Msa1179970:intron	30.0%
ATTGCTTGGTCTAATTTAGT+TGG	-	chr8_1:13717574-13717593	None:intergenic	30.0%
AGCAAATGATTTCAGATTTG+TGG	+	chr8_1:13717862-13717881	Msa1179970:five_prime_UTR	30.0%
GCAAATGATTTCAGATTTGT+GGG	+	chr8_1:13717863-13717882	Msa1179970:five_prime_UTR	30.0%
CAAATGATTTCAGATTTGTG+GGG	+	chr8_1:13717864-13717883	Msa1179970:five_prime_UTR	30.0%
AAACATCGAAGAAATCCTTA+TGG	+	chr8_1:13718308-13718327	Msa1179970:CDS	30.0%
AACATCGAAGAAATCCTTAT+GGG	+	chr8_1:13718309-13718328	Msa1179970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	13716873	13726052	13716873	ID=Msa1179970;Name=Msa1179970
chr8_1	mRNA	13716873	13726052	13716873	ID=Msa1179970-mRNA-1;Parent=Msa1179970;Name=Msa1179970-mRNA-1;_AED=0.33;_eAED=0.33;_QI=152\|1\|1\|1\|0.73\|0.75\|16\|1399\|285
chr8_1	exon	13716873	13716981	13716873	ID=Msa1179970-mRNA-1:exon:4999;Parent=Msa1179970-mRNA-1
chr8_1	exon	13717860	13718464	13717860	ID=Msa1179970-mRNA-1:exon:5000;Parent=Msa1179970-mRNA-1
chr8_1	exon	13719385	13719514	13719385	ID=Msa1179970-mRNA-1:exon:5001;Parent=Msa1179970-mRNA-1
chr8_1	exon	13719598	13719798	13719598	ID=Msa1179970-mRNA-1:exon:5002;Parent=Msa1179970-mRNA-1
chr8_1	exon	13721114	13721200	13721114	ID=Msa1179970-mRNA-1:exon:5003;Parent=Msa1179970-mRNA-1
chr8_1	exon	13721276	13721335	13721276	ID=Msa1179970-mRNA-1:exon:5004;Parent=Msa1179970-mRNA-1
chr8_1	exon	13721429	13721515	13721429	ID=Msa1179970-mRNA-1:exon:5005;Parent=Msa1179970-mRNA-1
chr8_1	exon	13722427	13722498	13722427	ID=Msa1179970-mRNA-1:exon:5006;Parent=Msa1179970-mRNA-1
chr8_1	exon	13722806	13722861	13722806	ID=Msa1179970-mRNA-1:exon:5007;Parent=Msa1179970-mRNA-1
chr8_1	exon	13723144	13723229	13723144	ID=Msa1179970-mRNA-1:exon:5008;Parent=Msa1179970-mRNA-1
chr8_1	exon	13723429	13723519	13723429	ID=Msa1179970-mRNA-1:exon:5009;Parent=Msa1179970-mRNA-1
chr8_1	exon	13723608	13723765	13723608	ID=Msa1179970-mRNA-1:exon:5010;Parent=Msa1179970-mRNA-1
chr8_1	exon	13723863	13723954	13723863	ID=Msa1179970-mRNA-1:exon:5011;Parent=Msa1179970-mRNA-1
chr8_1	exon	13724828	13724908	13724828	ID=Msa1179970-mRNA-1:exon:5012;Parent=Msa1179970-mRNA-1
chr8_1	exon	13725213	13725286	13725213	ID=Msa1179970-mRNA-1:exon:5013;Parent=Msa1179970-mRNA-1
chr8_1	exon	13725633	13726052	13725633	ID=Msa1179970-mRNA-1:exon:5014;Parent=Msa1179970-mRNA-1
chr8_1	five_prime_UTR	13716873	13716981	13716873	ID=Msa1179970-mRNA-1:five_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	five_prime_UTR	13717860	13717902	13717860	ID=Msa1179970-mRNA-1:five_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	CDS	13717903	13718464	13717903	ID=Msa1179970-mRNA-1:cds;Parent=Msa1179970-mRNA-1
chr8_1	CDS	13719385	13719514	13719385	ID=Msa1179970-mRNA-1:cds;Parent=Msa1179970-mRNA-1
chr8_1	CDS	13719598	13719763	13719598	ID=Msa1179970-mRNA-1:cds;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13719764	13719798	13719764	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13721114	13721200	13721114	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13721276	13721335	13721276	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13721429	13721515	13721429	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13722427	13722498	13722427	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13722806	13722861	13722806	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13723144	13723229	13723144	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13723429	13723519	13723429	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13723608	13723765	13723608	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13723863	13723954	13723863	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13724828	13724908	13724828	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13725213	13725286	13725213	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1
chr8_1	three_prime_UTR	13725633	13726052	13725633	ID=Msa1179970-mRNA-1:three_prime_utr;Parent=Msa1179970-mRNA-1

Gene Sequence

>Msa1179970

ATGTTGCTGCCAACCATTGGAGGAGGGATGAATTCTGCATTGGATGATATGAATTTGATTCAGCAAGCACAAAGGCATCACTTGGTTGTGAGGGAGATTGGTGAAGAGATTGATTTAGAAATTGGACCTGGAGAAGATGATCCTTCATTTGGTAACACAACACTAATCGGTGCACCGTTGCGGGAATCTTCTGCAGAAGAGCATGGTGAGAGCAAGCAGATGGCGACGGTTTCTCAGCTTTCTAATGATACTCAAGATATGTCTCAGAACCAACAGGTGAAAAGGAAGAAAAAGGTTGTTAAAAGATGGAGAGAGGAATGGGCAGACACTTACAAATGGGCTTATGTCGATGTGAAAGACGGGACACCAAGAATTTTCTGCTCTGTCTGCAGGGAATTTGGCCGAAAACATCGAAGAAATCCTTATGGGAATGAAGGCAGTCGAAATATGCAGATGAGTGCCCTCGAAGAACATAATAATAGTTTGCTTCATAAAGAGGCTCTTCGTCTTCAATCAGCCTCCAAAGATAAAATCATGGCCGATAAGCCTGTTTATGTAAAAGCTGTAATGTCAAAAACAGCGGGATCAATTCTTGAAGCGACACTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCTGTCCAGGAGGTAGTTCAAGCTCTTGAGAGAGTCATCGGGAAAAATTCTCATTATGTTAACATCATGGAGCGATTGCTGGAACCTGAACGAATGATTGTTTTTCGAGTTCCATGGGTGGATGATAGGGGTGAGACACACGTTAACCGGGGTTTCGGGTACAATTTAACCAGTCAATGGGTCCATGTAGAGGTGGCATTCGTTTTCATCCGTCGATGA

Protein sequence

>Msa1179970

MLLPTIGGGMNSALDDMNLIQQAQRHHLVVREIGEEIDLEIGPGEDDPSFGNTTLIGAPLRESSAEEHGESKQMATVSQLSNDTQDMSQNQQVKRKKKVVKRWREEWADTYKWAYVDVKDGTPRIFCSVCREFGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQSASKDKIMADKPVYVKAVMSKTAGSILEATLKRDPHEVEFIQAVQEVVQALERVIGKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFGYNLTSQWVHVEVAFVFIRR*