AlfalfaGEDB | Msa0580400

M. sativa cultivar zhongmu-4 / Msa0580400

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0008150 GO:0008152 GO:0009505 GO:0009531 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010941 GO:0010942 GO:0010981 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071704 GO:0071944 GO:0080090 GO:0090058 GO:0097159 GO:0097305 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580400	XP_003611265.2	97.994	349	6	1	1	348	1	349	0.0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580400	sp\|F4HYV5\|NAC26_ARATH	54.703	404	113	14	1	345	1	393	1.00e-129	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580400	G7KG95	97.994	349	6	1	1	348	1	349	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
Msa0580400	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0580400	Msa0795900	0.978921	7.549897e-147	-8.615850e-47
Msa0580400	Msa0833680	0.972211	2.134824e-134	-8.615850e-47
Msa0580400	Msa1132870	0.935759	5.113886e-97	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580400	MtrunA17_Chr5g0398971	97.994	349	6	1	1	348	1	349	0.0	723
Msa0580400	MtrunA17_Chr4g0056541	61.376	378	102	16	1	348	1	364	2.33e-144	412
Msa0580400	MtrunA17_Chr4g0018391	64.706	323	82	13	1	303	1	311	1.51e-136	392
Msa0580400	MtrunA17_Chr5g0405211	53.074	309	124	8	5	305	6	301	6.11e-102	304
Msa0580400	MtrunA17_Chr8g0372121	52.703	296	105	7	5	298	4	266	5.24e-97	290
Msa0580400	MtrunA17_Chr8g0346001	42.706	377	137	9	1	317	9	366	2.58e-83	259
Msa0580400	MtrunA17_Chr1g0200561	72.785	158	41	2	1	158	13	168	1.42e-81	252
Msa0580400	MtrunA17_Chr2g0309331	44.551	312	130	9	7	298	10	298	2.91e-79	246
Msa0580400	MtrunA17_Chr4g0017921	71.895	153	40	2	7	159	8	157	1.63e-77	241
Msa0580400	MtrunA17_Chr6g0484441	54.651	172	68	4	6	172	4	170	2.14e-60	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580400	AT1G62700.1	54.703	404	113	14	1	345	1	393	1.02e-130	379
Msa0580400	AT1G62700.2	54.703	404	113	14	1	345	1	393	1.02e-130	379
Msa0580400	AT1G12260.1	55.362	401	120	17	1	348	1	395	1.42e-128	374
Msa0580400	AT1G12260.2	55.615	374	108	14	1	348	1	342	5.06e-126	365
Msa0580400	AT2G18060.3	53.106	322	116	12	7	309	9	314	2.08e-102	306
Msa0580400	AT2G18060.1	53.106	322	116	12	7	309	9	314	2.08e-102	306
Msa0580400	AT4G36160.2	52.532	316	122	9	7	304	14	319	5.34e-101	303
Msa0580400	AT4G36160.1	52.532	316	122	9	7	304	10	315	5.60e-101	303
Msa0580400	AT4G36160.3	52.532	316	122	9	7	304	10	315	5.60e-101	303
Msa0580400	AT5G66300.1	52.475	303	102	11	7	295	12	286	1.98e-96	288

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Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAAATTGGTGGCC+AGG	0.482875	4_1:+85444266	Msa0580400:CDS
AAATGGACGATTCACCATGT+TGG	0.625967	4_1:+85443791	Msa0580400:CDS
AAATTTATAGGAAGAAGGAT+GGG	0.606307	4_1:+85443723	Msa0580400:intron
AACGAATAGCTACAACAATG+AGG	0.658581	4_1:+85443767	Msa0580400:CDS
AACTAGTAGTTATTGTAATG+TGG	0.607704	4_1:+85444206	Msa0580400:CDS
AACTTGTTGATCACTACCTC+AGG	0.545767	4_1:+85442974	Msa0580400:CDS
AAGACTCTTGTCTTCTATAA+AGG	0.338384	4_1:+85443478	Msa0580400:CDS
AAGAGAAGTTGAGAAAGTGA+AGG	0.578363	4_1:-85440198	None:intergenic
AATTTCTCACACGTTCCTCC+TGG	0.441033	4_1:+85442925	Msa0580400:CDS
ACAAAATCAATCAAATCCCT+AGG	0.564107	4_1:-85440237	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGTTTGAATGAAATAGGT+TGG	-	chr4_1:85440164-85440183	None:intergenic	30.0%
TGGAGATGTTTGAATGAAAT+AGG	-	chr4_1:85440168-85440187	None:intergenic	30.0%
TTTCAGTGATTCTATTCCTA+GGG	+	chr4_1:85440221-85440240	Msa0580400:five_prime_UTR	30.0%
ACAAAATCAATCAAATCCCT+AGG	-	chr4_1:85440240-85440259	None:intergenic	30.0%
ATTAATGGCAATTCATTCCT+CGG	-	chr4_1:85440270-85440289	None:intergenic	30.0%
CTACATACAAACACAATTTC+AGG	-	chr4_1:85440562-85440581	None:intergenic	30.0%
TAACAGTCAAAGTTGTGAAT+TGG	-	chr4_1:85440766-85440785	None:intergenic	30.0%
CATGAGATAATAAATGATCG+CGG	-	chr4_1:85441134-85441153	None:intergenic	30.0%
GTCCATAAGAAATGTACTAT+TGG	-	chr4_1:85441161-85441180	None:intergenic	30.0%
TTAAACGTTAGGTACATTGA+TGG	-	chr4_1:85441297-85441316	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	85440154	85444689	85440154	ID=Msa0580400;Name=Msa0580400
chr4_1	mRNA	85440154	85444689	85440154	ID=Msa0580400-mRNA-1;Parent=Msa0580400;Name=Msa0580400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=362\|1\|1\|1\|0.66\|0.5\|4\|348\|348
chr4_1	exon	85440154	85440484	85440154	ID=Msa0580400-mRNA-1:exon:31406;Parent=Msa0580400-mRNA-1
chr4_1	exon	85442888	85443078	85442888	ID=Msa0580400-mRNA-1:exon:31407;Parent=Msa0580400-mRNA-1
chr4_1	exon	85443305	85443582	85443305	ID=Msa0580400-mRNA-1:exon:31408;Parent=Msa0580400-mRNA-1
chr4_1	exon	85443733	85444689	85443733	ID=Msa0580400-mRNA-1:exon:31409;Parent=Msa0580400-mRNA-1
chr4_1	five_prime_UTR	85440154	85440484	85440154	ID=Msa0580400-mRNA-1:five_prime_utr;Parent=Msa0580400-mRNA-1
chr4_1	five_prime_UTR	85442888	85442918	85442888	ID=Msa0580400-mRNA-1:five_prime_utr;Parent=Msa0580400-mRNA-1
chr4_1	CDS	85442919	85443078	85442919	ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1	CDS	85443305	85443582	85443305	ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1	CDS	85443733	85444341	85443733	ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1	three_prime_UTR	85444342	85444689	85444342	ID=Msa0580400-mRNA-1:three_prime_utr;Parent=Msa0580400-mRNA-1

Gene Sequence

>Msa0580400

ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCGACCGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGATCTCTATAAGATTGAGCCATGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTCAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCAAACCATATTTGTCTCATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATACATGCAATCAGATCTTGAATCCCCAAGCAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAACACTACCCTTGCAAACAGGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGGCTAAGTCAAGATCAAGATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAATTGGTGGCCAGGAACACGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA

Protein sequence

>Msa0580400

MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSYMQSDLESPSRVSSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDASKGTSSYCNVAQQIALLSNDESKKSEIGGQEHVTSISNSNCQIDTWK*