AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580400 MtrunA17_Chr5g0398971 97.994 349 6 1 1 348 1 349 0.0 723
Msa0580400 MtrunA17_Chr4g0056541 61.376 378 102 16 1 348 1 364 2.33e-144 412
Msa0580400 MtrunA17_Chr4g0018391 64.706 323 82 13 1 303 1 311 1.51e-136 392
Msa0580400 MtrunA17_Chr5g0405211 53.074 309 124 8 5 305 6 301 6.11e-102 304
Msa0580400 MtrunA17_Chr8g0372121 52.703 296 105 7 5 298 4 266 5.24e-97 290
Msa0580400 MtrunA17_Chr8g0346001 42.706 377 137 9 1 317 9 366 2.58e-83 259
Msa0580400 MtrunA17_Chr1g0200561 72.785 158 41 2 1 158 13 168 1.42e-81 252
Msa0580400 MtrunA17_Chr2g0309331 44.551 312 130 9 7 298 10 298 2.91e-79 246
Msa0580400 MtrunA17_Chr4g0017921 71.895 153 40 2 7 159 8 157 1.63e-77 241
Msa0580400 MtrunA17_Chr6g0484441 54.651 172 68 4 6 172 4 170 2.14e-60 196
Msa0580400 MtrunA17_Chr3g0091921 57.595 158 60 3 7 161 16 169 3.90e-58 190
Msa0580400 MtrunA17_Chr4g0060931 56.962 158 61 3 7 161 17 170 4.59e-58 191
Msa0580400 MtrunA17_Chr2g0309891 55.128 156 66 3 7 160 6 159 2.03e-57 189
Msa0580400 MtrunA17_Chr6g0481091 54.902 153 66 3 7 158 6 156 2.39e-56 183
Msa0580400 MtrunA17_Chr2g0316971 55.063 158 64 3 5 158 21 175 3.42e-56 187
Msa0580400 MtrunA17_Chr6g0453451 44.017 234 111 7 7 231 20 242 3.50e-55 183
Msa0580400 MtrunA17_Chr3g0109821 54.839 155 64 4 7 158 6 157 7.00e-55 190
Msa0580400 MtrunA17_Chr2g0312321 42.800 250 123 9 1 242 1 238 7.47e-55 182
Msa0580400 MtrunA17_Chr7g0252971 49.102 167 69 3 5 158 6 169 7.99e-55 182
Msa0580400 MtrunA17_Chr1g0183741 53.595 153 64 3 7 158 10 156 1.32e-54 180
Msa0580400 MtrunA17_Chr6g0453131 45.128 195 94 2 1 185 9 200 1.86e-54 183
Msa0580400 MtrunA17_Chr8g0361731 49.412 170 72 3 9 167 16 182 2.32e-54 183
Msa0580400 MtrunA17_Chr5g0433781 54.902 153 66 3 7 158 6 156 2.51e-54 188
Msa0580400 MtrunA17_Chr3g0139331 53.595 153 66 3 7 158 11 159 3.81e-54 181
Msa0580400 MtrunA17_Chr7g0217721 42.460 252 99 7 10 227 22 261 4.74e-54 181
Msa0580400 MtrunA17_Chr1g0147421 55.195 154 63 4 7 158 27 176 8.45e-54 181
Msa0580400 MtrunA17_Chr5g0417001 39.583 240 111 6 7 231 14 234 1.61e-52 178
Msa0580400 MtrunA17_Chr4g0047841 44.390 205 79 6 6 182 14 211 2.42e-52 176
Msa0580400 MtrunA17_Chr7g0253011 34.783 345 168 11 7 307 17 348 3.34e-52 177
Msa0580400 MtrunA17_Chr7g0261411 52.597 154 64 4 5 156 8 154 3.85e-52 174
Msa0580400 MtrunA17_Chr4g0042561 49.123 171 77 4 5 169 7 173 4.42e-52 173
Msa0580400 MtrunA17_Chr2g0318101 48.193 166 70 3 6 158 14 176 5.36e-52 176
Msa0580400 MtrunA17_Chr3g0130731 49.682 157 70 3 7 159 7 158 2.94e-51 172
Msa0580400 MtrunA17_Chr7g0214071 52.258 155 66 3 6 159 14 161 3.17e-51 171
Msa0580400 MtrunA17_Chr3g0128111 52.000 150 69 3 10 158 45 192 3.38e-51 170
Msa0580400 MtrunA17_Chr8g0384721 49.390 164 73 3 1 159 1 159 6.49e-51 171
Msa0580400 MtrunA17_Chr3g0124761 50.318 157 69 3 7 159 7 158 8.63e-51 171
Msa0580400 MtrunA17_Chr5g0428991 53.165 158 71 3 3 159 21 176 9.01e-51 178
Msa0580400 MtrunA17_Chr5g0400461 48.125 160 74 3 5 158 4 160 1.92e-50 171
Msa0580400 MtrunA17_Chr5g0417791 44.565 184 89 5 7 184 3 179 7.32e-50 167
Msa0580400 MtrunA17_Chr7g0217711 60.938 128 46 2 10 137 22 145 9.91e-50 164
Msa0580400 MtrunA17_Chr4g0054791 43.434 198 95 5 5 190 4 196 1.83e-49 168
Msa0580400 MtrunA17_Chr6g0461661 50.000 158 68 4 7 158 18 170 2.48e-49 169
Msa0580400 MtrunA17_Chr2g0311651 40.693 231 109 7 7 220 21 240 2.61e-49 167
Msa0580400 MtrunA17_Chr2g0311661 36.727 275 143 9 7 253 20 291 2.99e-49 167
Msa0580400 MtrunA17_Chr3g0128151 50.000 156 75 3 4 158 19 172 6.07e-49 173
Msa0580400 MtrunA17_Chr2g0318081 50.000 154 70 4 7 158 16 164 2.37e-48 166
Msa0580400 MtrunA17_Chr7g0263931 48.428 159 71 4 7 158 11 165 2.54e-48 165
Msa0580400 MtrunA17_Chr3g0144271 56.296 135 54 3 7 139 23 154 1.98e-47 166
Msa0580400 MtrunA17_Chr8g0359921 48.387 155 73 3 7 158 14 164 3.19e-46 160
Msa0580400 MtrunA17_Chr4g0076731 47.712 153 74 3 7 158 54 201 3.56e-46 162
Msa0580400 MtrunA17_Chr4g0038751 46.914 162 75 4 9 168 17 169 9.40e-46 158
Msa0580400 MtrunA17_Chr1g0197351 49.045 157 71 3 9 158 44 198 1.48e-45 162
Msa0580400 MtrunA17_Chr3g0092671 49.669 151 73 3 9 158 7 155 1.56e-45 163
Msa0580400 MtrunA17_Chr5g0442771 34.130 293 159 9 7 279 18 296 2.43e-45 157
Msa0580400 MtrunA17_Chr2g0326361 48.447 161 68 5 7 158 14 168 2.43e-45 157
Msa0580400 MtrunA17_Chr3g0130101 47.059 153 74 5 9 158 9 157 7.30e-45 157
Msa0580400 MtrunA17_Chr1g0197361 49.007 151 74 3 9 158 10 158 8.94e-45 161
Msa0580400 MtrunA17_Chr1g0201021 47.682 151 76 3 9 158 21 169 1.43e-44 160
Msa0580400 MtrunA17_Chr8g0364791 46.753 154 75 4 9 159 8 157 2.52e-44 157
Msa0580400 MtrunA17_Chr8g0385991 50.610 164 63 7 2 155 9 164 8.99e-44 150
Msa0580400 MtrunA17_Chr8g0384201 46.104 154 76 4 9 159 8 157 3.11e-43 155
Msa0580400 MtrunA17_Chr4g0026141 34.583 240 135 8 8 230 6 240 6.49e-40 141
Msa0580400 MtrunA17_Chr3g0131911 45.833 168 76 5 2 159 9 171 1.31e-39 140
Msa0580400 MtrunA17_Chr8g0345671 42.105 190 99 6 2 186 3 186 1.39e-37 139
Msa0580400 MtrunA17_Chr8g0345691 47.403 154 69 6 6 155 11 156 2.26e-36 136
Msa0580400 MtrunA17_Chr3g0113001 52.679 112 45 3 52 159 10 117 1.58e-34 128
Msa0580400 MtrunA17_Chr2g0321631 39.655 174 90 8 8 171 5 173 1.30e-32 122
Msa0580400 MtrunA17_Chr7g0266701 35.429 175 102 5 6 171 3 175 4.38e-31 118
Msa0580400 MtrunA17_Chr4g0050701 36.875 160 82 4 7 158 11 159 6.34e-31 115
Msa0580400 MtrunA17_Chr8g0345711 42.308 130 71 4 7 134 12 139 2.64e-28 108
Msa0580400 MtrunA17_Chr3g0113031 53.125 96 31 3 73 159 3 93 1.38e-27 109
Msa0580400 MtrunA17_Chr8g0345701 41.333 150 68 6 1 134 1 146 5.10e-27 105
Msa0580400 MtrunA17_Chr2g0321741 46.296 108 55 2 27 134 12 116 7.42e-27 108
Msa0580400 MtrunA17_Chr8g0345731 41.353 133 71 5 7 134 24 154 3.48e-24 97.4
Msa0580400 MtrunA17_Chr8g0345721 38.788 165 64 7 10 141 38 198 1.36e-23 97.1
Msa0580400 MtrunA17_Chr8g0345741 43.802 121 60 5 18 134 2 118 9.65e-21 87.4
Msa0580400 MtrunA17_Chr7g0243371 48.750 80 40 1 61 139 15 94 1.27e-20 86.3
Msa0580400 MtrunA17_Chr8g0384351 35.057 174 84 8 7 178 10 156 9.15e-20 85.9
Msa0580400 MtrunA17_Chr3g0130321 30.178 169 97 5 1 157 1 160 2.78e-17 79.3
Msa0580400 MtrunA17_Chr7g0251651 26.875 160 112 4 7 166 18 172 2.16e-14 70.9
Msa0580400 MtrunA17_Chr7g0251661 29.688 128 86 3 7 134 10 133 3.26e-13 66.6
Msa0580400 MtrunA17_Chr2g0282871 26.697 221 135 10 1 201 47 260 2.43e-12 67.0
Msa0580400 MtrunA17_Chr4g0040541 29.714 175 94 8 1 156 42 206 7.16e-11 62.4
Msa0580400 MtrunA17_Chr1g0194791 54.167 48 21 1 9 55 48 95 9.44e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580400 AT1G62700.1 54.703 404 113 14 1 345 1 393 1.02e-130 379
Msa0580400 AT1G62700.2 54.703 404 113 14 1 345 1 393 1.02e-130 379
Msa0580400 AT1G12260.1 55.362 401 120 17 1 348 1 395 1.42e-128 374
Msa0580400 AT1G12260.2 55.615 374 108 14 1 348 1 342 5.06e-126 365
Msa0580400 AT2G18060.3 53.106 322 116 12 7 309 9 314 2.08e-102 306
Msa0580400 AT2G18060.1 53.106 322 116 12 7 309 9 314 2.08e-102 306
Msa0580400 AT4G36160.2 52.532 316 122 9 7 304 14 319 5.34e-101 303
Msa0580400 AT4G36160.1 52.532 316 122 9 7 304 10 315 5.60e-101 303
Msa0580400 AT4G36160.3 52.532 316 122 9 7 304 10 315 5.60e-101 303
Msa0580400 AT5G66300.1 52.475 303 102 11 7 295 12 286 1.98e-96 288
Msa0580400 AT5G62380.2 48.615 325 114 10 1 300 1 297 6.43e-92 278
Msa0580400 AT5G62380.1 48.615 325 114 10 1 300 1 297 6.43e-92 278
Msa0580400 AT2G46770.1 47.152 316 110 11 1 295 10 289 9.07e-83 256
Msa0580400 AT1G71930.2 50.558 269 105 10 5 262 7 258 1.20e-78 244
Msa0580400 AT1G71930.1 50.558 269 105 10 5 262 7 258 1.20e-78 244
Msa0580400 AT1G32770.1 44.654 318 128 9 1 296 10 301 3.39e-77 241
Msa0580400 AT4G10350.1 70.130 154 44 2 7 159 9 161 2.00e-76 239
Msa0580400 AT1G33280.1 71.242 153 41 2 7 159 8 157 2.02e-76 238
Msa0580400 AT3G61910.1 63.953 172 47 2 1 158 5 175 1.24e-75 236
Msa0580400 AT1G79580.3 69.281 153 45 1 7 159 17 167 2.43e-75 237
Msa0580400 AT1G79580.5 69.281 153 45 1 7 159 17 167 2.43e-75 237
Msa0580400 AT1G79580.4 69.281 153 45 1 7 159 17 167 2.43e-75 237
Msa0580400 AT1G79580.2 69.281 153 45 1 7 159 17 167 2.43e-75 237
Msa0580400 AT1G79580.1 69.281 153 45 1 7 159 17 167 2.43e-75 237
Msa0580400 AT3G18400.1 56.688 157 64 2 6 162 4 156 1.32e-61 200
Msa0580400 AT2G24430.2 56.688 157 64 2 7 162 16 169 1.28e-59 194
Msa0580400 AT2G24430.1 56.688 157 64 2 7 162 16 169 1.28e-59 194
Msa0580400 AT5G61430.1 41.667 264 130 9 7 256 16 269 6.69e-59 193
Msa0580400 AT5G39610.1 55.488 164 66 3 7 167 20 179 8.75e-58 189
Msa0580400 AT3G04060.1 52.500 160 70 2 7 163 20 176 7.24e-57 188
Msa0580400 AT3G17730.1 54.902 153 66 3 7 158 6 156 1.22e-56 185
Msa0580400 AT5G18270.1 50.888 169 76 3 7 171 21 186 2.19e-56 187
Msa0580400 AT5G18270.2 50.888 169 76 3 7 171 21 186 3.46e-56 186
Msa0580400 AT5G07680.2 42.446 278 121 10 7 265 3 260 5.87e-56 185
Msa0580400 AT5G07680.1 42.446 278 121 10 7 265 17 274 9.96e-56 185
Msa0580400 AT1G65910.1 55.556 153 65 3 7 158 6 156 1.15e-55 192
Msa0580400 AT5G53950.1 54.777 157 64 3 6 158 16 169 2.03e-55 186
Msa0580400 AT1G76420.1 55.556 153 64 2 7 158 22 171 2.25e-55 184
Msa0580400 AT3G29035.1 50.556 180 82 3 7 183 24 199 3.92e-55 183
Msa0580400 AT1G69490.1 51.807 166 69 4 5 164 7 167 4.99e-54 179
Msa0580400 AT1G54330.1 53.750 160 70 3 7 166 6 161 8.39e-54 179
Msa0580400 AT5G46590.1 50.000 168 78 3 5 167 4 170 9.51e-54 179
Msa0580400 AT5G17260.1 39.773 264 140 7 7 254 6 266 1.08e-53 184
Msa0580400 AT1G01720.1 46.448 183 87 4 1 178 1 177 5.69e-53 177
Msa0580400 AT3G12977.1 51.923 156 69 3 5 158 16 167 6.88e-53 176
Msa0580400 AT3G03200.1 53.205 156 69 3 7 160 6 159 7.97e-53 181
Msa0580400 AT3G10480.1 54.902 153 63 4 9 158 29 178 1.04e-52 180
Msa0580400 AT3G10490.1 51.592 157 70 4 5 158 25 178 1.08e-52 174
Msa0580400 AT4G35580.1 53.595 153 68 3 7 158 9 159 1.12e-52 182
Msa0580400 AT3G15170.1 54.839 155 63 3 5 155 18 169 1.42e-52 176
Msa0580400 AT4G35580.3 53.595 153 68 3 7 158 9 159 1.51e-52 182
Msa0580400 AT4G35580.2 38.824 255 124 7 7 246 9 246 1.67e-52 182
Msa0580400 AT3G04070.2 49.123 171 70 5 5 162 8 174 3.55e-52 176
Msa0580400 AT5G46590.2 57.576 132 55 1 5 136 4 134 5.26e-52 174
Msa0580400 AT2G43000.1 50.658 152 69 3 9 158 20 167 5.63e-52 174
Msa0580400 AT3G10480.2 54.248 153 63 4 9 158 29 177 6.46e-52 178
Msa0580400 AT1G33060.2 52.288 153 70 3 7 158 24 174 8.03e-52 182
Msa0580400 AT1G33060.1 52.288 153 70 3 7 158 24 174 8.54e-52 182
Msa0580400 AT5G39820.1 44.262 183 76 3 7 166 20 199 1.42e-51 174
Msa0580400 AT3G10490.2 52.941 153 66 4 9 158 29 178 1.72e-51 177
Msa0580400 AT1G56010.2 39.592 245 119 9 5 234 17 247 3.21e-51 173
Msa0580400 AT1G61110.1 48.503 167 68 3 6 158 15 177 7.18e-51 172
Msa0580400 AT3G04070.1 47.312 186 67 6 5 162 8 190 2.63e-50 172
Msa0580400 AT4G27410.2 49.673 153 72 3 7 158 14 162 1.52e-49 168
Msa0580400 AT1G77450.1 47.305 167 79 3 6 168 9 170 1.59e-49 166
Msa0580400 AT4G10350.2 72.477 109 28 2 52 159 7 114 1.73e-49 167
Msa0580400 AT5G63790.1 44.615 195 90 6 6 194 49 231 2.94e-49 167
Msa0580400 AT5G63790.2 44.615 195 90 6 6 194 59 241 3.54e-49 168
Msa0580400 AT1G26870.1 45.977 174 78 4 9 170 18 187 3.91e-49 170
Msa0580400 AT5G24590.2 50.000 158 77 2 3 159 9 165 9.13e-49 170
Msa0580400 AT4G17980.1 44.500 200 86 7 5 183 4 199 1.63e-48 164
Msa0580400 AT5G04410.1 51.282 156 71 4 5 158 7 159 1.92e-48 171
Msa0580400 AT5G08790.1 40.741 216 101 6 6 215 6 200 1.93e-48 165
Msa0580400 AT4G17980.2 44.500 200 86 7 5 183 4 199 2.56e-48 164
Msa0580400 AT4G28530.1 48.256 172 64 5 5 158 8 172 4.70e-48 166
Msa0580400 AT3G49530.2 49.020 153 76 2 7 158 13 164 5.22e-48 167
Msa0580400 AT3G15500.1 48.734 158 74 4 7 162 14 166 5.47e-48 164
Msa0580400 AT3G15510.1 47.879 165 70 3 11 162 21 182 9.14e-48 165
Msa0580400 AT3G10500.1 49.677 155 75 3 5 158 7 159 1.03e-47 169
Msa0580400 AT2G33480.1 47.097 155 74 3 6 159 14 161 1.29e-47 162
Msa0580400 AT3G49530.1 49.020 153 76 2 7 158 13 164 1.70e-47 167
Msa0580400 AT1G52890.1 46.988 166 81 4 7 170 14 174 1.74e-47 163
Msa0580400 AT5G13180.1 45.342 161 81 2 2 161 9 163 3.43e-47 160
Msa0580400 AT4G27410.3 46.108 167 74 4 7 158 14 179 6.46e-47 162
Msa0580400 AT3G10480.3 45.789 190 64 6 5 158 25 211 7.68e-47 166
Msa0580400 AT1G32510.1 44.262 183 93 3 5 179 4 185 9.38e-47 160
Msa0580400 AT2G33480.2 46.753 154 74 3 6 159 14 159 2.27e-46 159
Msa0580400 AT2G18060.2 43.983 241 100 12 88 309 2 226 2.69e-46 159
Msa0580400 AT2G02450.1 46.711 152 77 2 7 158 51 198 1.44e-45 160
Msa0580400 AT2G02450.2 46.711 152 77 2 7 158 51 198 1.86e-45 160
Msa0580400 AT1G34190.1 49.045 157 71 6 9 161 18 169 4.77e-45 162
Msa0580400 AT1G34180.3 45.455 154 81 3 9 161 18 169 8.69e-45 159
Msa0580400 AT1G34180.1 45.455 154 81 3 9 161 18 169 3.71e-44 160
Msa0580400 AT1G52880.1 47.305 167 73 3 11 165 21 184 4.38e-44 154
Msa0580400 AT2G17040.1 43.210 162 81 5 9 168 8 160 1.85e-43 151
Msa0580400 AT3G12910.1 44.509 173 71 6 9 162 23 189 5.66e-42 148
Msa0580400 AT1G34180.4 42.262 168 78 4 9 161 18 181 1.12e-41 151
Msa0580400 AT1G34180.2 43.452 168 76 5 9 161 18 181 4.06e-41 152
Msa0580400 AT5G09330.5 45.570 158 77 5 5 158 4 156 5.02e-41 150
Msa0580400 AT5G09330.2 45.570 158 77 5 5 158 4 156 5.02e-41 150
Msa0580400 AT5G09330.4 45.570 158 77 5 5 158 4 156 5.02e-41 150
Msa0580400 AT5G09330.3 45.570 158 77 5 5 158 4 156 5.02e-41 150
Msa0580400 AT5G09330.1 45.570 158 77 5 5 158 4 156 5.02e-41 150
Msa0580400 AT5G64060.1 42.675 157 83 5 5 158 4 156 1.13e-40 146
Msa0580400 AT5G04395.1 46.358 151 69 3 5 143 26 176 1.92e-40 141
Msa0580400 AT2G27300.1 42.262 168 86 5 5 170 12 170 2.44e-40 145
Msa0580400 AT5G22290.1 42.581 155 81 3 5 159 19 165 1.91e-39 142
Msa0580400 AT3G44290.2 46.825 126 64 2 9 134 16 138 1.53e-37 134
Msa0580400 AT5G61430.2 38.426 216 109 9 55 256 1 206 2.92e-37 135
Msa0580400 AT3G44290.1 46.825 126 64 2 9 134 16 138 1.26e-36 135
Msa0580400 AT1G56010.1 40.217 184 85 7 65 234 8 180 2.41e-35 129
Msa0580400 AT3G12977.2 54.128 109 44 3 52 158 10 114 4.97e-35 128
Msa0580400 AT1G32870.2 43.871 155 80 4 7 158 10 160 6.68e-34 131
Msa0580400 AT1G32870.1 43.871 155 80 4 7 158 10 160 7.81e-34 131
Msa0580400 AT1G32870.3 43.871 155 80 4 7 158 46 196 1.27e-33 130
Msa0580400 AT2G33480.3 47.573 103 52 2 58 159 3 104 4.00e-29 112
Msa0580400 AT3G44350.2 34.706 170 99 7 10 172 8 172 8.60e-28 109
Msa0580400 AT5G22380.1 36.774 155 88 5 10 156 8 160 2.10e-27 108
Msa0580400 AT4G01550.1 39.869 153 82 5 10 158 7 153 6.07e-27 111
Msa0580400 AT3G44350.1 37.762 143 80 5 10 146 8 147 8.66e-27 104
Msa0580400 AT4G01520.1 37.500 152 86 5 8 155 5 151 1.58e-26 107
Msa0580400 AT4G28530.2 45.133 113 41 3 5 100 8 116 1.87e-25 104
Msa0580400 AT4G01540.4 37.333 150 85 5 10 155 7 151 2.09e-25 105
Msa0580400 AT4G01540.3 37.333 150 85 5 10 155 7 151 2.38e-25 106
Msa0580400 AT4G01540.2 37.333 150 85 5 10 155 7 151 3.74e-25 105
Msa0580400 AT4G01540.1 37.333 150 85 5 10 155 7 151 4.20e-25 105
Msa0580400 AT1G02230.1 42.484 153 75 8 8 155 4 148 1.37e-24 103
Msa0580400 AT5G64530.1 33.929 168 80 5 7 158 3 155 2.67e-24 98.6
Msa0580400 AT5G64530.2 39.695 131 63 4 7 136 3 118 1.84e-23 95.5
Msa0580400 AT2G43000.2 48.315 89 43 2 72 158 2 89 4.02e-23 95.5
Msa0580400 AT3G04420.2 37.662 154 86 5 8 158 4 150 1.05e-22 96.7
Msa0580400 AT1G02250.1 43.511 131 66 5 8 134 4 130 1.31e-22 97.8
Msa0580400 AT3G04420.1 37.662 154 86 5 8 158 4 150 2.67e-22 96.7
Msa0580400 AT3G10490.4 54.430 79 31 3 83 158 2 78 1.15e-21 94.7
Msa0580400 AT3G10490.3 54.430 79 31 3 83 158 2 78 1.15e-21 94.7
Msa0580400 AT1G01010.1 28.627 255 150 11 10 252 6 240 1.50e-19 89.7
Msa0580400 AT5G50820.1 36.301 146 66 6 1 136 10 138 7.85e-19 84.0
Msa0580400 AT1G02220.1 39.695 131 70 5 7 134 3 127 2.90e-18 85.5
Msa0580400 AT3G56530.1 28.947 152 102 4 7 156 52 199 5.86e-16 78.2
Msa0580400 AT5G14000.1 28.834 163 102 5 1 159 9 161 3.82e-14 70.9
Msa0580400 AT5G14000.2 30.714 140 85 4 1 136 9 140 9.32e-14 68.6
Msa0580400 AT3G04430.1 35.075 134 71 5 13 134 6 135 4.68e-12 64.7
Msa0580400 AT5G22290.2 40.845 71 36 2 89 159 2 66 4.75e-12 65.5

Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTATGCAAATGCTTTA+TGG 0.217473 4_1:+85444078 Msa0580400:CDS
ATATTTAACAATGCTTTATA+AGG 0.230877 4_1:-85444461 None:intergenic
TATTAATATTATAATATTAT+AGG 0.239089 4_1:+85444371 Msa0580400:three_prime_UTR
CATGAAGAATTATGCAAAAT+AGG 0.241059 4_1:+85443298 Msa0580400:intron
TCATAAGATTGTTGAATAAA+AGG 0.248907 4_1:+85440359 Msa0580400:five_prime_UTR
TCAAGATCAAGATGCTTCTA+AGG 0.257448 4_1:+85444182 Msa0580400:CDS
CATTGTTAAATATTCTTATC+AGG 0.271722 4_1:+85444471 Msa0580400:three_prime_UTR
TCATTCCAATGAGACAAATA+TGG 0.283809 4_1:-85443453 None:intergenic
TGTTGGTATGATGCATTATA+AGG 0.290690 4_1:-85443880 None:intergenic
GAGCTACAAAAGCAGGATTC+TGG 0.293307 4_1:+85443395 Msa0580400:CDS
ACTAAAAGTAAGGTAATTAA+TGG 0.309464 4_1:-85440282 None:intergenic
CGCTTAGAAACAAATGAAAA+TGG 0.311609 4_1:+85443547 Msa0580400:CDS
AGCTACAACAATGAGGAAAA+TGG 0.315574 4_1:+85443774 Msa0580400:CDS
TATCAGTTGCAGAGTATTAA+TGG 0.316332 4_1:-85444521 None:intergenic
ATTAATATTATAATATTATA+GGG 0.322258 4_1:+85444372 Msa0580400:three_prime_UTR
TCAAACCATATTTGTCTCAT+TGG 0.325097 4_1:+85443448 Msa0580400:CDS
ACTACACATTGGAGTCTTTA+CGG 0.325597 4_1:+85440443 Msa0580400:five_prime_UTR
AAGACTCTTGTCTTCTATAA+AGG 0.338384 4_1:+85443478 Msa0580400:CDS
TGGAGATGTTTGAATGAAAT+AGG 0.341751 4_1:-85440165 None:intergenic
CAATCAGATTTCTGACCATT+AGG 0.344528 4_1:-85443508 None:intergenic
GCATTTGCATACTTTGTTGC+TGG 0.361225 4_1:-85444071 None:intergenic
TAGACAAATTTGTTGCTTCT+CGG 0.362135 4_1:+85444154 Msa0580400:CDS
TTTCTAGTTGTGGAAGTTGT+AGG 0.384400 4_1:-85443987 None:intergenic
GCTGCGTATAAATGATATAT+AGG 0.408014 4_1:-85444667 None:intergenic
GATGAGAAGAAACTCTGCTT+GGG 0.418707 4_1:-85443855 None:intergenic
CGGAGAGCAAATCAAGGTTA+AGG 0.423351 4_1:+85440463 Msa0580400:five_prime_UTR
AGATTGAAGTCACGTGTTCC+TGG 0.423511 4_1:-85444284 None:intergenic
GGTAGTGTTGTTGTTGATGT+TGG 0.424074 4_1:-85443897 None:intergenic
TATTTAACAATGCTTTATAA+GGG 0.425291 4_1:-85444460 None:intergenic
CCACGTGTCAATCTGACAAT+TGG 0.427216 4_1:-85444313 None:intergenic
ATTGCAAATTTATAGGAAGA+AGG 0.439363 4_1:+85443718 Msa0580400:intron
ATTAATGGCAATTCATTCCT+CGG 0.439769 4_1:-85440267 None:intergenic
AATTTCTCACACGTTCCTCC+TGG 0.441033 4_1:+85442925 Msa0580400:CDS
TTTCAGTGATTCTATTCCTA+GGG 0.456563 4_1:+85440221 Msa0580400:five_prime_UTR
CAAATTTATAGGAAGAAGGA+TGG 0.460174 4_1:+85443722 Msa0580400:intron
TCTAGAAAGCACTAAAAGTA+AGG 0.469030 4_1:-85440292 None:intergenic
TCAATGACTCAAGAACAATA+TGG 0.470954 4_1:+85444048 Msa0580400:CDS
GATGTTTGAATGAAATAGGT+TGG 0.474345 4_1:-85440161 None:intergenic
ACAACACTACCCTTGCAAAC+AGG 0.477080 4_1:+85443909 Msa0580400:CDS
AAAATCAGAAATTGGTGGCC+AGG 0.482875 4_1:+85444266 Msa0580400:CDS
TATAAAGGAAGAGCACCTAA+TGG 0.497610 4_1:+85443493 Msa0580400:CDS
CTAATGGTCAGAAATCTGAT+TGG 0.500760 4_1:+85443509 Msa0580400:CDS
GTCGGTTTCTCTTGCACAAG+AGG 0.507422 4_1:-85444499 None:intergenic
GCAGGATTCTGGAAAGCTAC+AGG 0.509600 4_1:+85443406 Msa0580400:CDS
TTAATGGCAATTCATTCCTC+GGG 0.510764 4_1:-85440266 None:intergenic
CAAGTTCTTCATCGGTCGGA+TGG 0.514498 4_1:-85442957 None:intergenic
ACAAATAGAGCTACAAAAGC+AGG 0.518256 4_1:+85443388 Msa0580400:CDS
TGATGAGAAGAAACTCTGCT+TGG 0.519246 4_1:-85443856 None:intergenic
CTACCCTTGCAAACAGGAGT+TGG 0.522959 4_1:+85443915 Msa0580400:CDS
AGCATTGCAAAGGAGAATTG+AGG 0.523842 4_1:-85444011 None:intergenic
GTTGGTATGATGCATTATAA+GGG 0.529739 4_1:-85443879 None:intergenic
TGATCCAACTCCTGTTTGCA+AGG 0.531456 4_1:-85443919 None:intergenic
GTCGGATGGAAACGAAATCC+AGG 0.536029 4_1:-85442943 None:intergenic
TCTCTATAAGATTGAGCCAT+GGG 0.539211 4_1:+85443047 Msa0580400:CDS
AACTTGTTGATCACTACCTC+AGG 0.545767 4_1:+85442974 Msa0580400:CDS
GTCAATCTGACAATTGGAGT+TGG 0.548688 4_1:-85444307 None:intergenic
CAATGATTTACAAGCAGTAG+TGG 0.549631 4_1:+85444107 Msa0580400:CDS
TGAAAATGGAACTACTCCTC+AGG 0.553926 4_1:+85443561 Msa0580400:CDS
ACAAAATCAATCAAATCCCT+AGG 0.564107 4_1:-85440237 None:intergenic
TAAGTACCTTGTAGATCCCA+TGG 0.571291 4_1:-85443063 None:intergenic
CAAGATCAAGATGCTTCTAA+GGG 0.572925 4_1:+85444183 Msa0580400:CDS
CTATTTGTACGACTGCTCGT+TGG 0.573237 4_1:-85443373 None:intergenic
TCTTTACGGAGAGCAAATCA+AGG 0.577015 4_1:+85440457 Msa0580400:five_prime_UTR
AAGAGAAGTTGAGAAAGTGA+AGG 0.578363 4_1:-85440198 None:intergenic
TAGTGGAGCAATCAAACGAA+TGG 0.580549 4_1:+85444124 Msa0580400:CDS
ATCTCTATAAGATTGAGCCA+TGG 0.582288 4_1:+85443046 Msa0580400:CDS
AGTTGCAGAGTATTAATGGT+CGG 0.582550 4_1:-85444517 None:intergenic
GAAGTGATGAACAAACTGAA+TGG 0.585532 4_1:+85443320 Msa0580400:CDS
ATCAGATCTACACTACACAT+TGG 0.591222 4_1:+85440432 Msa0580400:five_prime_UTR
GTGATCAACAAGTTCTTCAT+CGG 0.592849 4_1:-85442965 None:intergenic
AAATTTATAGGAAGAAGGAT+GGG 0.606307 4_1:+85443723 Msa0580400:intron
GATCCAACTCCTGTTTGCAA+GGG 0.606580 4_1:-85443918 None:intergenic
AACTAGTAGTTATTGTAATG+TGG 0.607704 4_1:+85444206 Msa0580400:CDS
TCAACAAGTTCTTCATCGGT+CGG 0.617043 4_1:-85442961 None:intergenic
AAATGGACGATTCACCATGT+TGG 0.625967 4_1:+85443791 Msa0580400:CDS
ATGAGAAGAAACTCTGCTTG+GGG 0.635709 4_1:-85443854 None:intergenic
ATTGAGCCATGGGATCTACA+AGG 0.653934 4_1:+85443057 Msa0580400:CDS
AACGAATAGCTACAACAATG+AGG 0.658581 4_1:+85443767 Msa0580400:CDS
AGTATGCAAATGCTTTATGG+TGG 0.663879 4_1:+85444081 Msa0580400:CDS
GATGATAATGAGCATTGCAA+AGG 0.667877 4_1:-85444021 None:intergenic
CCAATTGTCAGATTGACACG+TGG 0.699000 4_1:+85444313 Msa0580400:CDS
ACTTGATCATCATACCAACA+TGG 0.713321 4_1:-85443805 None:intergenic
GGATGGAAACGAAATCCAGG+AGG 0.779067 4_1:-85442940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATATTATAATATTAT+AGG + chr4_1:85444371-85444390 Msa0580400:three_prime_UTR 0.0%
!! ATTAATATTATAATATTATA+GGG + chr4_1:85444372-85444391 Msa0580400:three_prime_UTR 0.0%
!! ATATGTTAAGAAATTTAAAA+TGG + chr4_1:85440928-85440947 Msa0580400:intron 10.0%
!! TTAATTATAATCTACAAAAT+AGG - chr4_1:85441548-85441567 None:intergenic 10.0%
!!! TTTTTTAATTACTTTTGTTT+AGG + chr4_1:85444609-85444628 Msa0580400:three_prime_UTR 10.0%
!! TTAACTCAACTTTATATAAT+CGG - chr4_1:85440605-85440624 None:intergenic 15.0%
!! TGTAGATTATAATTAATGTT+TGG + chr4_1:85441552-85441571 Msa0580400:intron 15.0%
!! AATAATCTTAATGATCTTAT+AGG - chr4_1:85441583-85441602 None:intergenic 15.0%
!!! AATTCATTTTTCAATTCTTA+TGG + chr4_1:85441713-85441732 Msa0580400:intron 15.0%
!!! ATGCATTTTAAAATTTGAAA+TGG - chr4_1:85442261-85442280 None:intergenic 15.0%
!! CCAAAAAAAATACAAATTAT+AGG - chr4_1:85442306-85442325 None:intergenic 15.0%
!!! CCTATAATTTGTATTTTTTT+TGG + chr4_1:85442303-85442322 Msa0580400:intron 15.0%
!!! CTTAATTTTTATAATTTCGT+CGG + chr4_1:85442393-85442412 Msa0580400:intron 15.0%
!!! TTAATTTTTATAATTTCGTC+GGG + chr4_1:85442394-85442413 Msa0580400:intron 15.0%
!! ATAAGAAATCCAAAAAAAAA+AGG - chr4_1:85442689-85442708 None:intergenic 15.0%
!! CAAGTTAATTAAAATTCAAT+AGG - chr4_1:85443698-85443717 None:intergenic 15.0%
!! TATTTAACAATGCTTTATAA+GGG - chr4_1:85444463-85444482 None:intergenic 15.0%
!! ATATTTAACAATGCTTTATA+AGG - chr4_1:85444464-85444483 None:intergenic 15.0%
!! ACTAAAAGTAAGGTAATTAA+TGG - chr4_1:85440285-85440304 None:intergenic 20.0%
!! TCATAAGATTGTTGAATAAA+AGG + chr4_1:85440359-85440378 Msa0580400:five_prime_UTR 20.0%
!!! TTAAAATGGTAAGTTTGTTT+TGG + chr4_1:85440942-85440961 Msa0580400:intron 20.0%
!!! TTGCTACATATATTTTGAAA+AGG + chr4_1:85441081-85441100 Msa0580400:intron 20.0%
!! GATAAAACAATACTATAATG+TGG - chr4_1:85441399-85441418 None:intergenic 20.0%
!! TTATAATCTACAAAATAGGT+TGG - chr4_1:85441544-85441563 None:intergenic 20.0%
!!! TCTTCTTTTTCAAATAAATG+AGG + chr4_1:85441779-85441798 Msa0580400:intron 20.0%
!! TTGGATAGAAAAATAAATGT+AGG + chr4_1:85441811-85441830 Msa0580400:intron 20.0%
!! TGGATAGAAAAATAAATGTA+GGG + chr4_1:85441812-85441831 Msa0580400:intron 20.0%
!! TTACAAACTCAACATTTATT+TGG - chr4_1:85441849-85441868 None:intergenic 20.0%
!!! TATACTTGAAAATAGTTTTG+AGG - chr4_1:85441931-85441950 None:intergenic 20.0%
!! TTTAATATAGTCATATGTGT+AGG + chr4_1:85442002-85442021 Msa0580400:intron 20.0%
!! AATTTCTCAAGAAATAAAGA+TGG - chr4_1:85442213-85442232 None:intergenic 20.0%
!!! ATTTTGTTGTCTCTTTTAAT+AGG + chr4_1:85442230-85442249 Msa0580400:intron 20.0%
!! AAGTACTATAAATGATTTGA+AGG + chr4_1:85442337-85442356 Msa0580400:intron 20.0%
!!! TAATTTTTATAATTTCGTCG+GGG + chr4_1:85442395-85442414 Msa0580400:intron 20.0%
!! ACTAAATTCATGTCTAAATA+AGG - chr4_1:85442608-85442627 None:intergenic 20.0%
!! TCTCTTATATATAAAATCGA+AGG + chr4_1:85443185-85443204 Msa0580400:intron 20.0%
!! ATTATAAGTATTATTACCTG+AGG - chr4_1:85443580-85443599 None:intergenic 20.0%
!!! ACACAACTATTGATTTTATT+AGG + chr4_1:85443662-85443681 Msa0580400:intron 20.0%
!! TAACTTGATTGCAAATTTAT+AGG + chr4_1:85443711-85443730 Msa0580400:intron 20.0%
!! TAACTCCTACAAAAATTAAA+AGG + chr4_1:85444407-85444426 Msa0580400:three_prime_UTR 20.0%
!! AACTCCTACAAAAATTAAAA+GGG + chr4_1:85444408-85444427 Msa0580400:three_prime_UTR 20.0%
!!! AATACCCTTTTAATTTTTGT+AGG - chr4_1:85444415-85444434 None:intergenic 20.0%
!!! TACAAAAATTAAAAGGGTAT+TGG + chr4_1:85444414-85444433 Msa0580400:three_prime_UTR 20.0%
!! CATTGTTAAATATTCTTATC+AGG + chr4_1:85444471-85444490 Msa0580400:three_prime_UTR 20.0%
! AAAGTGAAGGAAAAAGAAAA+TGG - chr4_1:85440188-85440207 None:intergenic 25.0%
!! TTTCTAGATTTGTCTCTTTT+TGG + chr4_1:85440307-85440326 Msa0580400:five_prime_UTR 25.0%
! CAAAATATATGTAGCAACTA+GGG - chr4_1:85441078-85441097 None:intergenic 25.0%
! TCAAAATATATGTAGCAACT+AGG - chr4_1:85441079-85441098 None:intergenic 25.0%
! ATCCAATAGTACATTTCTTA+TGG + chr4_1:85441156-85441175 Msa0580400:intron 25.0%
! AATGCTAATTAAATGTCACT+TGG + chr4_1:85441205-85441224 Msa0580400:intron 25.0%
!! ATGCTAATTAAATGTCACTT+GGG + chr4_1:85441206-85441225 Msa0580400:intron 25.0%
! TGAAACAAAAGGAATGAAAA+GGG - chr4_1:85441335-85441354 None:intergenic 25.0%
! AACAATACTATAATGTGGTT+GGG - chr4_1:85441394-85441413 None:intergenic 25.0%
! AAACAATACTATAATGTGGT+TGG - chr4_1:85441395-85441414 None:intergenic 25.0%
!!! TTTGTTTCTTTTTCCTTTCA+AGG + chr4_1:85441662-85441681 Msa0580400:intron 25.0%
!!! TTGTTTCTTTTTCCTTTCAA+GGG + chr4_1:85441663-85441682 Msa0580400:intron 25.0%
!!! ATAAATGAGGAGTATTTTGT+TGG + chr4_1:85441792-85441811 Msa0580400:intron 25.0%
! TTGTGTATAAATCTGAGAAT+CGG + chr4_1:85441957-85441976 Msa0580400:intron 25.0%
! CAAATTCGCTAAAAACAAAA+AGG - chr4_1:85442090-85442109 None:intergenic 25.0%
! TGAAGGTAAATTAACAAACT+TGG + chr4_1:85442354-85442373 Msa0580400:intron 25.0%
! TTACCTCAATCACTAAATAA+AGG - chr4_1:85442425-85442444 None:intergenic 25.0%
! TGATTGAGGTAACATTTAAT+AGG + chr4_1:85442433-85442452 Msa0580400:intron 25.0%
! GATTGAGGTAACATTTAATA+GGG + chr4_1:85442434-85442453 Msa0580400:intron 25.0%
!!! ATCTTTTGACTCTTTTTAAG+AGG + chr4_1:85442503-85442522 Msa0580400:intron 25.0%
!!! AATGTCGAGTCATTTTAATA+TGG - chr4_1:85442530-85442549 None:intergenic 25.0%
! TAGTTTAATTCATGCTTTCT+TGG + chr4_1:85442624-85442643 Msa0580400:intron 25.0%
!!! TTACTCTGACCTTTTTTTTT+TGG + chr4_1:85442677-85442696 Msa0580400:intron 25.0%
! TGTATTGAAGAGAACTATAA+AGG - chr4_1:85442756-85442775 None:intergenic 25.0%
!!! CCAACTTTATTTTATAAGAC+CGG - chr4_1:85443099-85443118 None:intergenic 25.0%
!! CGGTCTTATAAAATAAAGTT+GGG + chr4_1:85443097-85443116 Msa0580400:intron 25.0%
! CATGAAGAATTATGCAAAAT+AGG + chr4_1:85443298-85443317 Msa0580400:intron 25.0%
!!! CTTGTTTTTCAGAAAAAGAA+AGG - chr4_1:85443620-85443639 None:intergenic 25.0%
! ATTGCAAATTTATAGGAAGA+AGG + chr4_1:85443718-85443737 Msa0580400:intron 25.0%
! AAATTTATAGGAAGAAGGAT+GGG + chr4_1:85443723-85443742 Msa0580400:intron 25.0%
! AACTAGTAGTTATTGTAATG+TGG + chr4_1:85444206-85444225 Msa0580400:CDS 25.0%
! GAATCCAAAAAATCAGAAAT+TGG + chr4_1:85444258-85444277 Msa0580400:CDS 25.0%
GATGTTTGAATGAAATAGGT+TGG - chr4_1:85440164-85440183 None:intergenic 30.0%
TGGAGATGTTTGAATGAAAT+AGG - chr4_1:85440168-85440187 None:intergenic 30.0%
! TTTTCAGTGATTCTATTCCT+AGG + chr4_1:85440220-85440239 Msa0580400:five_prime_UTR 30.0%
TTTCAGTGATTCTATTCCTA+GGG + chr4_1:85440221-85440240 Msa0580400:five_prime_UTR 30.0%
ACAAAATCAATCAAATCCCT+AGG - chr4_1:85440240-85440259 None:intergenic 30.0%
ATTAATGGCAATTCATTCCT+CGG - chr4_1:85440270-85440289 None:intergenic 30.0%
!! TCTAGAAAGCACTAAAAGTA+AGG - chr4_1:85440295-85440314 None:intergenic 30.0%
!!! ATTTGTCTCTTTTTGGTTGT+TGG + chr4_1:85440314-85440333 Msa0580400:five_prime_UTR 30.0%
! ATTTTGTGCTGCAAATTAAG+AGG + chr4_1:85440401-85440420 Msa0580400:five_prime_UTR 30.0%
CTACATACAAACACAATTTC+AGG - chr4_1:85440562-85440581 None:intergenic 30.0%
TAACAGTCAAAGTTGTGAAT+TGG - chr4_1:85440766-85440785 None:intergenic 30.0%
!! TGTAAGATGTTTGATTTGTC+TGG - chr4_1:85440848-85440867 None:intergenic 30.0%
CATGAGATAATAAATGATCG+CGG - chr4_1:85441134-85441153 None:intergenic 30.0%
GTCCATAAGAAATGTACTAT+TGG - chr4_1:85441161-85441180 None:intergenic 30.0%
! TGCTAATTAAATGTCACTTG+GGG + chr4_1:85441207-85441226 Msa0580400:intron 30.0%
TTAAACGTTAGGTACATTGA+TGG - chr4_1:85441297-85441316 None:intergenic 30.0%
GTGAAACAAAAGGAATGAAA+AGG - chr4_1:85441336-85441355 None:intergenic 30.0%
ATTGTCTGATGTGAAACAAA+AGG - chr4_1:85441346-85441365 None:intergenic 30.0%
AATTTAGTCCATTCATGTTC+TGG - chr4_1:85441507-85441526 None:intergenic 30.0%
CATCATTGCATTCTACAAAA+GGG + chr4_1:85441611-85441630 Msa0580400:intron 30.0%
!! GTCGTTTTATGCTATTAACA+TGG + chr4_1:85442037-85442056 Msa0580400:intron 30.0%
TTCTCAAGAAATAAAGATGG+AGG - chr4_1:85442210-85442229 None:intergenic 30.0%
!! AGTTTCTAGCTATGTCAATT+AGG - chr4_1:85442716-85442735 None:intergenic 30.0%
GTTCTCTTCAATACAAATCA+TGG + chr4_1:85442761-85442780 Msa0580400:intron 30.0%
GGAAAAAGATAGCTTCTAAA+AGG + chr4_1:85442995-85443014 Msa0580400:CDS 30.0%
!!! CTTTATTTTATAAGACCGGA+AGG - chr4_1:85443095-85443114 None:intergenic 30.0%
! CCGGTCTTATAAAATAAAGT+TGG + chr4_1:85443096-85443115 Msa0580400:intron 30.0%
TCAAACCATATTTGTCTCAT+TGG + chr4_1:85443448-85443467 Msa0580400:CDS 30.0%
TCATTCCAATGAGACAAATA+TGG - chr4_1:85443456-85443475 None:intergenic 30.0%
AAGACTCTTGTCTTCTATAA+AGG + chr4_1:85443478-85443497 Msa0580400:CDS 30.0%
CGCTTAGAAACAAATGAAAA+TGG + chr4_1:85443547-85443566 Msa0580400:CDS 30.0%
CAAATTTATAGGAAGAAGGA+TGG + chr4_1:85443722-85443741 Msa0580400:intron 30.0%
GTTGGTATGATGCATTATAA+GGG - chr4_1:85443882-85443901 None:intergenic 30.0%
TGTTGGTATGATGCATTATA+AGG - chr4_1:85443883-85443902 None:intergenic 30.0%
TCAATGACTCAAGAACAATA+TGG + chr4_1:85444048-85444067 Msa0580400:CDS 30.0%
CAAAGTATGCAAATGCTTTA+TGG + chr4_1:85444078-85444097 Msa0580400:CDS 30.0%
!! TAGACAAATTTGTTGCTTCT+CGG + chr4_1:85444154-85444173 Msa0580400:CDS 30.0%
TCCAAAAAATCAGAAATTGG+TGG + chr4_1:85444261-85444280 Msa0580400:CDS 30.0%
! TATCAGTTGCAGAGTATTAA+TGG - chr4_1:85444524-85444543 None:intergenic 30.0%
GCTGCGTATAAATGATATAT+AGG - chr4_1:85444670-85444689 None:intergenic 30.0%
AAGAGAAGTTGAGAAAGTGA+AGG - chr4_1:85440201-85440220 None:intergenic 35.0%
! TTGATTTTGTTCAATTCCCG+AGG + chr4_1:85440250-85440269 Msa0580400:five_prime_UTR 35.0%
TTAATGGCAATTCATTCCTC+GGG - chr4_1:85440269-85440288 None:intergenic 35.0%
ATCAGATCTACACTACACAT+TGG + chr4_1:85440432-85440451 Msa0580400:five_prime_UTR 35.0%
ACTACACATTGGAGTCTTTA+CGG + chr4_1:85440443-85440462 Msa0580400:five_prime_UTR 35.0%
TGACTCTAATCTGTGTGTTT+CGG + chr4_1:85441245-85441264 Msa0580400:intron 35.0%
! TAGGTACATTGATGGACATA+TGG - chr4_1:85441289-85441308 None:intergenic 35.0%
GTGAGCATGATTTAAACGTT+AGG - chr4_1:85441308-85441327 None:intergenic 35.0%
ATAATGTGGTTGGGACAATA+GGG - chr4_1:85441385-85441404 None:intergenic 35.0%
TATAATGTGGTTGGGACAAT+AGG - chr4_1:85441386-85441405 None:intergenic 35.0%
GCATCATTGCATTCTACAAA+AGG + chr4_1:85441610-85441629 Msa0580400:intron 35.0%
! CTTTTTCCTTTCAAGGGAAA+AGG + chr4_1:85441669-85441688 Msa0580400:intron 35.0%
! TTAACTCCTTTTCCCTTGAA+AGG - chr4_1:85441678-85441697 None:intergenic 35.0%
AGAGGAAACAGCAATAGTAA+AGG - chr4_1:85441744-85441763 None:intergenic 35.0%
AAAAGGATGAATCTGTGAAC+AGG - chr4_1:85442073-85442092 None:intergenic 35.0%
! TTTTTATAATTTCGTCGGGG+AGG + chr4_1:85442398-85442417 Msa0580400:intron 35.0%
! GGTCCTTTATTTAGTGATTG+AGG + chr4_1:85442419-85442438 Msa0580400:intron 35.0%
GTCTAAATAAGGTATAGAGC+TGG - chr4_1:85442597-85442616 None:intergenic 35.0%
CTTCCATTTCAGAATAACAC+AGG - chr4_1:85442820-85442839 None:intergenic 35.0%
GTGATCAACAAGTTCTTCAT+CGG - chr4_1:85442968-85442987 None:intergenic 35.0%
! TAGAAGCTATCTTTTTCCTG+AGG - chr4_1:85442993-85443012 None:intergenic 35.0%
ATCTCTATAAGATTGAGCCA+TGG + chr4_1:85443046-85443065 Msa0580400:CDS 35.0%
TCTCTATAAGATTGAGCCAT+GGG + chr4_1:85443047-85443066 Msa0580400:CDS 35.0%
AGGTACTTAATTACTCCTTC+CGG + chr4_1:85443077-85443096 Msa0580400:intron 35.0%
GAAGTGATGAACAAACTGAA+TGG + chr4_1:85443320-85443339 Msa0580400:CDS 35.0%
ACAAATAGAGCTACAAAAGC+AGG + chr4_1:85443388-85443407 Msa0580400:CDS 35.0%
!! TATAAAGGAAGAGCACCTAA+TGG + chr4_1:85443493-85443512 Msa0580400:CDS 35.0%
CAATCAGATTTCTGACCATT+AGG - chr4_1:85443511-85443530 None:intergenic 35.0%
CTAATGGTCAGAAATCTGAT+TGG + chr4_1:85443509-85443528 Msa0580400:CDS 35.0%
AACGAATAGCTACAACAATG+AGG + chr4_1:85443767-85443786 Msa0580400:CDS 35.0%
AGCTACAACAATGAGGAAAA+TGG + chr4_1:85443774-85443793 Msa0580400:CDS 35.0%
ACTTGATCATCATACCAACA+TGG - chr4_1:85443808-85443827 None:intergenic 35.0%
!! TTTCTAGTTGTGGAAGTTGT+AGG - chr4_1:85443990-85444009 None:intergenic 35.0%
!!! GAATTGAGGTTTTCTAGTTG+TGG - chr4_1:85444000-85444019 None:intergenic 35.0%
! GATGATAATGAGCATTGCAA+AGG - chr4_1:85444024-85444043 None:intergenic 35.0%
AGTATGCAAATGCTTTATGG+TGG + chr4_1:85444081-85444100 Msa0580400:CDS 35.0%
CAATGATTTACAAGCAGTAG+TGG + chr4_1:85444107-85444126 Msa0580400:CDS 35.0%
TCAAGATCAAGATGCTTCTA+AGG + chr4_1:85444182-85444201 Msa0580400:CDS 35.0%
CAAGATCAAGATGCTTCTAA+GGG + chr4_1:85444183-85444202 Msa0580400:CDS 35.0%
!!! GCCACCAATTTCTGATTTTT+TGG - chr4_1:85444265-85444284 None:intergenic 35.0%
! AGTTGCAGAGTATTAATGGT+CGG - chr4_1:85444520-85444539 None:intergenic 35.0%
TCTTTACGGAGAGCAAATCA+AGG + chr4_1:85440457-85440476 Msa0580400:five_prime_UTR 40.0%
TCTAATCTGTGTGTTTCGGT+TGG + chr4_1:85441249-85441268 Msa0580400:intron 40.0%
CTCGTAAACCAGAACATGAA+TGG + chr4_1:85441496-85441515 Msa0580400:intron 40.0%
CTTGTAGCACACAAAAGAGA+AGG - chr4_1:85441637-85441656 None:intergenic 40.0%
CATGCTTTCTTGGATTGTCT+TGG + chr4_1:85442634-85442653 Msa0580400:intron 40.0%
! GTGCCTGTGTTATTCTGAAA+TGG + chr4_1:85442814-85442833 Msa0580400:intron 40.0%
TCAACAAGTTCTTCATCGGT+CGG - chr4_1:85442964-85442983 None:intergenic 40.0%
!! AACTTGTTGATCACTACCTC+AGG + chr4_1:85442974-85442993 Msa0580400:CDS 40.0%
TAAGTACCTTGTAGATCCCA+TGG - chr4_1:85443066-85443085 None:intergenic 40.0%
TGAAAATGGAACTACTCCTC+AGG + chr4_1:85443561-85443580 Msa0580400:CDS 40.0%
AAATGGACGATTCACCATGT+TGG + chr4_1:85443791-85443810 Msa0580400:CDS 40.0%
ATGAGAAGAAACTCTGCTTG+GGG - chr4_1:85443857-85443876 None:intergenic 40.0%
GATGAGAAGAAACTCTGCTT+GGG - chr4_1:85443858-85443877 None:intergenic 40.0%
TGATGAGAAGAAACTCTGCT+TGG - chr4_1:85443859-85443878 None:intergenic 40.0%
! GGTAGTGTTGTTGTTGATGT+TGG - chr4_1:85443900-85443919 None:intergenic 40.0%
AGCATTGCAAAGGAGAATTG+AGG - chr4_1:85444014-85444033 None:intergenic 40.0%
GCATTTGCATACTTTGTTGC+TGG - chr4_1:85444074-85444093 None:intergenic 40.0%
TAGTGGAGCAATCAAACGAA+TGG + chr4_1:85444124-85444143 Msa0580400:CDS 40.0%
! AAAATCAGAAATTGGTGGCC+AGG + chr4_1:85444266-85444285 Msa0580400:CDS 40.0%
GTCAATCTGACAATTGGAGT+TGG - chr4_1:85444310-85444329 None:intergenic 40.0%
CGGAGAGCAAATCAAGGTTA+AGG + chr4_1:85440463-85440482 Msa0580400:five_prime_UTR 45.0%
ATTGGCACGTGTGAAGTCAT+TGG - chr4_1:85440748-85440767 None:intergenic 45.0%
! TGTTTTATCTGCATGCGACG+TGG + chr4_1:85441410-85441429 Msa0580400:intron 45.0%
!! GTTCTGGTTTACGAGTGCTA+AGG - chr4_1:85441491-85441510 None:intergenic 45.0%
TTCAACCTGCGTGCATTTGA+CGG - chr4_1:85442874-85442893 None:intergenic 45.0%
AATTTCTCACACGTTCCTCC+TGG + chr4_1:85442925-85442944 Msa0580400:CDS 45.0%
ATTGAGCCATGGGATCTACA+AGG + chr4_1:85443057-85443076 Msa0580400:CDS 45.0%
CTATTTGTACGACTGCTCGT+TGG - chr4_1:85443376-85443395 None:intergenic 45.0%
GAGCTACAAAAGCAGGATTC+TGG + chr4_1:85443395-85443414 Msa0580400:CDS 45.0%
ACAACACTACCCTTGCAAAC+AGG + chr4_1:85443909-85443928 Msa0580400:CDS 45.0%
GATCCAACTCCTGTTTGCAA+GGG - chr4_1:85443921-85443940 None:intergenic 45.0%
TGATCCAACTCCTGTTTGCA+AGG - chr4_1:85443922-85443941 None:intergenic 45.0%
AGATTGAAGTCACGTGTTCC+TGG - chr4_1:85444287-85444306 None:intergenic 45.0%
CCACGTGTCAATCTGACAAT+TGG - chr4_1:85444316-85444335 None:intergenic 45.0%
CCAATTGTCAGATTGACACG+TGG + chr4_1:85444313-85444332 Msa0580400:CDS 45.0%
!! TAATATCAATTAAATTTAAA+AGG - chr4_1:85440506-85440525 None:intergenic 5.0%
!! TATTTATATAATTAGTTAAA+AGG + chr4_1:85440880-85440899 Msa0580400:intron 5.0%
!! ATTTATATAATTAGTTAAAA+GGG + chr4_1:85440881-85440900 Msa0580400:intron 5.0%
!! AATAAATTAATATATAATCT+TGG - chr4_1:85443230-85443249 None:intergenic 5.0%
TGTGGTTGGGACAATAGGGA+CGG - chr4_1:85441381-85441400 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_1:85441760-85441779 None:intergenic 50.0%
! TTTTCCCGTCAAATGCACGC+AGG + chr4_1:85442866-85442885 Msa0580400:intron 50.0%
TCAACCTGCGTGCATTTGAC+GGG - chr4_1:85442873-85442892 None:intergenic 50.0%
GGATGGAAACGAAATCCAGG+AGG - chr4_1:85442943-85442962 None:intergenic 50.0%
GTCGGATGGAAACGAAATCC+AGG - chr4_1:85442946-85442965 None:intergenic 50.0%
CAAGTTCTTCATCGGTCGGA+TGG - chr4_1:85442960-85442979 None:intergenic 50.0%
! GCAGGATTCTGGAAAGCTAC+AGG + chr4_1:85443406-85443425 Msa0580400:CDS 50.0%
CTACCCTTGCAAACAGGAGT+TGG + chr4_1:85443915-85443934 Msa0580400:CDS 50.0%
! GTCGGTTTCTCTTGCACAAG+AGG - chr4_1:85444502-85444521 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85440154 85444689 85440154 ID=Msa0580400;Name=Msa0580400
chr4_1 mRNA 85440154 85444689 85440154 ID=Msa0580400-mRNA-1;Parent=Msa0580400;Name=Msa0580400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=362|1|1|1|0.66|0.5|4|348|348
chr4_1 exon 85440154 85440484 85440154 ID=Msa0580400-mRNA-1:exon:31406;Parent=Msa0580400-mRNA-1
chr4_1 exon 85442888 85443078 85442888 ID=Msa0580400-mRNA-1:exon:31407;Parent=Msa0580400-mRNA-1
chr4_1 exon 85443305 85443582 85443305 ID=Msa0580400-mRNA-1:exon:31408;Parent=Msa0580400-mRNA-1
chr4_1 exon 85443733 85444689 85443733 ID=Msa0580400-mRNA-1:exon:31409;Parent=Msa0580400-mRNA-1
chr4_1 five_prime_UTR 85440154 85440484 85440154 ID=Msa0580400-mRNA-1:five_prime_utr;Parent=Msa0580400-mRNA-1
chr4_1 five_prime_UTR 85442888 85442918 85442888 ID=Msa0580400-mRNA-1:five_prime_utr;Parent=Msa0580400-mRNA-1
chr4_1 CDS 85442919 85443078 85442919 ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1 CDS 85443305 85443582 85443305 ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1 CDS 85443733 85444341 85443733 ID=Msa0580400-mRNA-1:cds;Parent=Msa0580400-mRNA-1
chr4_1 three_prime_UTR 85444342 85444689 85444342 ID=Msa0580400-mRNA-1:three_prime_utr;Parent=Msa0580400-mRNA-1
Gene Sequence

>Msa0580400

ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCGACCGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGATCTCTATAAGATTGAGCCATGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTCAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCAAACCATATTTGTCTCATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATACATGCAATCAGATCTTGAATCCCCAAGCAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAACACTACCCTTGCAAACAGGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGGCTAAGTCAAGATCAAGATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAATTGGTGGCCAGGAACACGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA
Protein sequence

>Msa0580400

MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSYMQSDLESPSRVSSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDASKGTSSYCNVAQQIALLSNDESKKSEIGGQEHVTSISNSNCQIDTWK*