AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132870 MtrunA17_Chr5g0398971 97.708 349 7 1 1 348 1 349 0.0 721
Msa1132870 MtrunA17_Chr4g0056541 61.111 378 103 16 1 348 1 364 1.13e-143 410
Msa1132870 MtrunA17_Chr4g0018391 64.706 323 82 13 1 303 1 311 1.76e-136 392
Msa1132870 MtrunA17_Chr5g0405211 53.074 309 124 8 5 305 6 301 6.18e-102 304
Msa1132870 MtrunA17_Chr8g0372121 52.703 296 105 7 5 298 4 266 5.08e-97 290
Msa1132870 MtrunA17_Chr8g0346001 42.706 377 137 9 1 317 9 366 3.14e-83 259
Msa1132870 MtrunA17_Chr1g0200561 72.785 158 41 2 1 158 13 168 1.37e-81 252
Msa1132870 MtrunA17_Chr2g0309331 44.551 312 130 9 7 298 10 298 2.42e-79 246
Msa1132870 MtrunA17_Chr4g0017921 71.895 153 40 2 7 159 8 157 1.30e-77 242
Msa1132870 MtrunA17_Chr6g0484441 54.651 172 68 4 6 172 4 170 2.05e-60 197
Msa1132870 MtrunA17_Chr3g0091921 57.595 158 60 3 7 161 16 169 4.16e-58 190
Msa1132870 MtrunA17_Chr4g0060931 56.962 158 61 3 7 161 17 170 5.11e-58 191
Msa1132870 MtrunA17_Chr2g0309891 55.128 156 66 3 7 160 6 159 1.80e-57 189
Msa1132870 MtrunA17_Chr6g0481091 54.902 153 66 3 7 158 6 156 2.50e-56 183
Msa1132870 MtrunA17_Chr2g0316971 55.063 158 64 3 5 158 21 175 3.57e-56 187
Msa1132870 MtrunA17_Chr6g0453451 44.017 234 111 7 7 231 20 242 3.50e-55 183
Msa1132870 MtrunA17_Chr3g0109821 54.839 155 64 4 7 158 6 157 5.71e-55 190
Msa1132870 MtrunA17_Chr7g0252971 49.102 167 69 3 5 158 6 169 7.50e-55 182
Msa1132870 MtrunA17_Chr2g0312321 42.800 250 123 9 1 242 1 238 8.22e-55 181
Msa1132870 MtrunA17_Chr1g0183741 53.595 153 64 3 7 158 10 156 1.34e-54 180
Msa1132870 MtrunA17_Chr6g0453131 45.128 195 94 2 1 185 9 200 1.55e-54 183
Msa1132870 MtrunA17_Chr5g0433781 54.902 153 66 3 7 158 6 156 2.31e-54 188
Msa1132870 MtrunA17_Chr8g0361731 49.412 170 72 3 9 167 16 182 2.45e-54 183
Msa1132870 MtrunA17_Chr3g0139331 53.595 153 66 3 7 158 11 159 3.28e-54 181
Msa1132870 MtrunA17_Chr7g0217721 42.460 252 99 7 10 227 22 261 5.16e-54 181
Msa1132870 MtrunA17_Chr1g0147421 55.195 154 63 4 7 158 27 176 7.60e-54 181
Msa1132870 MtrunA17_Chr5g0417001 39.583 240 111 6 7 231 14 234 1.71e-52 178
Msa1132870 MtrunA17_Chr4g0047841 44.390 205 79 6 6 182 14 211 2.61e-52 176
Msa1132870 MtrunA17_Chr7g0253011 34.783 345 168 11 7 307 17 348 3.24e-52 177
Msa1132870 MtrunA17_Chr7g0261411 52.597 154 64 4 5 156 8 154 3.57e-52 174
Msa1132870 MtrunA17_Chr4g0042561 49.123 171 77 4 5 169 7 173 4.51e-52 173
Msa1132870 MtrunA17_Chr2g0318101 48.193 166 70 3 6 158 14 176 5.03e-52 176
Msa1132870 MtrunA17_Chr3g0130731 49.682 157 70 3 7 159 7 158 2.88e-51 172
Msa1132870 MtrunA17_Chr7g0214071 52.258 155 66 3 6 159 14 161 2.94e-51 171
Msa1132870 MtrunA17_Chr3g0128111 52.000 150 69 3 10 158 45 192 3.31e-51 170
Msa1132870 MtrunA17_Chr8g0384721 49.390 164 73 3 1 159 1 159 6.09e-51 171
Msa1132870 MtrunA17_Chr5g0428991 53.165 158 71 3 3 159 21 176 7.05e-51 179
Msa1132870 MtrunA17_Chr3g0124761 50.318 157 69 3 7 159 7 158 8.09e-51 171
Msa1132870 MtrunA17_Chr5g0400461 48.125 160 74 3 5 158 4 160 2.07e-50 171
Msa1132870 MtrunA17_Chr5g0417791 44.565 184 89 5 7 184 3 179 7.72e-50 167
Msa1132870 MtrunA17_Chr7g0217711 60.938 128 46 2 10 137 22 145 1.05e-49 164
Msa1132870 MtrunA17_Chr4g0054791 43.434 198 95 5 5 190 4 196 2.06e-49 168
Msa1132870 MtrunA17_Chr6g0461661 50.000 158 68 4 7 158 18 170 2.31e-49 169
Msa1132870 MtrunA17_Chr2g0311651 40.693 231 109 7 7 220 21 240 2.32e-49 167
Msa1132870 MtrunA17_Chr2g0311661 36.727 275 143 9 7 253 20 291 3.02e-49 167
Msa1132870 MtrunA17_Chr3g0128151 50.000 156 75 3 4 158 19 172 5.54e-49 173
Msa1132870 MtrunA17_Chr2g0318081 50.000 154 70 4 7 158 16 164 2.15e-48 166
Msa1132870 MtrunA17_Chr7g0263931 48.428 159 71 4 7 158 11 165 2.44e-48 165
Msa1132870 MtrunA17_Chr3g0144271 56.296 135 54 3 7 139 23 154 1.84e-47 166
Msa1132870 MtrunA17_Chr8g0359921 48.387 155 73 3 7 158 14 164 3.00e-46 160
Msa1132870 MtrunA17_Chr4g0076731 47.712 153 74 3 7 158 54 201 3.38e-46 162
Msa1132870 MtrunA17_Chr4g0038751 46.914 162 75 4 9 168 17 169 8.55e-46 158
Msa1132870 MtrunA17_Chr3g0092671 49.669 151 73 3 9 158 7 155 1.42e-45 163
Msa1132870 MtrunA17_Chr1g0197351 49.045 157 71 3 9 158 44 198 1.54e-45 162
Msa1132870 MtrunA17_Chr2g0326361 48.447 161 68 5 7 158 14 168 2.19e-45 157
Msa1132870 MtrunA17_Chr5g0442771 34.130 293 159 9 7 279 18 296 2.76e-45 157
Msa1132870 MtrunA17_Chr3g0130101 47.059 153 74 5 9 158 9 157 5.85e-45 157
Msa1132870 MtrunA17_Chr1g0197361 49.007 151 74 3 9 158 10 158 8.33e-45 161
Msa1132870 MtrunA17_Chr1g0201021 47.682 151 76 3 9 158 21 169 1.23e-44 161
Msa1132870 MtrunA17_Chr8g0364791 46.753 154 75 4 9 159 8 157 2.32e-44 158
Msa1132870 MtrunA17_Chr8g0385991 50.610 164 63 7 2 155 9 164 8.99e-44 150
Msa1132870 MtrunA17_Chr8g0384201 46.104 154 76 4 9 159 8 157 3.55e-43 155
Msa1132870 MtrunA17_Chr4g0026141 34.583 240 135 8 8 230 6 240 6.49e-40 141
Msa1132870 MtrunA17_Chr3g0131911 45.833 168 76 5 2 159 9 171 1.28e-39 140
Msa1132870 MtrunA17_Chr8g0345671 42.105 190 99 6 2 186 3 186 1.29e-37 139
Msa1132870 MtrunA17_Chr8g0345691 47.403 154 69 6 6 155 11 156 2.00e-36 136
Msa1132870 MtrunA17_Chr3g0113001 52.679 112 45 3 52 159 10 117 1.60e-34 128
Msa1132870 MtrunA17_Chr2g0321631 39.655 174 90 8 8 171 5 173 1.26e-32 122
Msa1132870 MtrunA17_Chr7g0266701 33.333 198 106 6 6 194 3 183 3.79e-31 118
Msa1132870 MtrunA17_Chr4g0050701 36.875 160 82 4 7 158 11 159 6.68e-31 115
Msa1132870 MtrunA17_Chr8g0345711 42.308 130 71 4 7 134 12 139 2.73e-28 108
Msa1132870 MtrunA17_Chr3g0113031 53.125 96 31 3 73 159 3 93 1.39e-27 109
Msa1132870 MtrunA17_Chr8g0345701 41.333 150 68 6 1 134 1 146 4.94e-27 105
Msa1132870 MtrunA17_Chr2g0321741 46.296 108 55 2 27 134 12 116 8.04e-27 108
Msa1132870 MtrunA17_Chr8g0345731 41.353 133 71 5 7 134 24 154 3.55e-24 97.4
Msa1132870 MtrunA17_Chr8g0345721 38.788 165 64 7 10 141 38 198 1.23e-23 97.1
Msa1132870 MtrunA17_Chr8g0345741 43.802 121 60 5 18 134 2 118 9.65e-21 87.4
Msa1132870 MtrunA17_Chr7g0243371 48.750 80 40 1 61 139 15 94 1.30e-20 85.9
Msa1132870 MtrunA17_Chr8g0384351 35.057 174 84 8 7 178 10 156 9.43e-20 85.9
Msa1132870 MtrunA17_Chr3g0130321 30.178 169 97 5 1 157 1 160 2.75e-17 79.3
Msa1132870 MtrunA17_Chr7g0251651 26.875 160 112 4 7 166 18 172 2.30e-14 70.9
Msa1132870 MtrunA17_Chr7g0251661 29.688 128 86 3 7 134 10 133 3.33e-13 66.6
Msa1132870 MtrunA17_Chr2g0282871 26.697 221 135 10 1 201 47 260 2.24e-12 67.0
Msa1132870 MtrunA17_Chr4g0040541 29.714 175 94 8 1 156 42 206 7.64e-11 62.0
Msa1132870 MtrunA17_Chr1g0194791 54.167 48 21 1 9 55 48 95 9.44e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132870 AT1G62700.1 54.703 404 113 14 1 345 1 393 1.52e-130 379
Msa1132870 AT1G62700.2 54.703 404 113 14 1 345 1 393 1.52e-130 379
Msa1132870 AT1G12260.1 55.362 401 120 17 1 348 1 395 1.97e-128 373
Msa1132870 AT1G12260.2 55.615 374 108 14 1 348 1 342 7.33e-126 365
Msa1132870 AT2G18060.3 53.106 322 116 12 7 309 9 314 2.11e-102 306
Msa1132870 AT2G18060.1 53.106 322 116 12 7 309 9 314 2.11e-102 306
Msa1132870 AT4G36160.1 52.532 316 122 9 7 304 10 315 5.54e-101 303
Msa1132870 AT4G36160.3 52.532 316 122 9 7 304 10 315 5.54e-101 303
Msa1132870 AT4G36160.2 52.532 316 122 9 7 304 14 319 5.64e-101 303
Msa1132870 AT5G66300.1 52.475 303 102 11 7 295 12 286 2.19e-96 288
Msa1132870 AT5G62380.2 48.615 325 114 10 1 300 1 297 6.64e-92 278
Msa1132870 AT5G62380.1 48.615 325 114 10 1 300 1 297 6.64e-92 278
Msa1132870 AT2G46770.1 47.152 316 110 11 1 295 10 289 8.50e-83 256
Msa1132870 AT1G71930.2 50.558 269 105 10 5 262 7 258 1.16e-78 244
Msa1132870 AT1G71930.1 50.558 269 105 10 5 262 7 258 1.16e-78 244
Msa1132870 AT1G32770.1 44.654 318 128 9 1 296 10 301 3.82e-77 241
Msa1132870 AT4G10350.1 70.130 154 44 2 7 159 9 161 1.89e-76 239
Msa1132870 AT1G33280.1 71.242 153 41 2 7 159 8 157 2.02e-76 238
Msa1132870 AT3G61910.1 63.953 172 47 2 1 158 5 175 1.30e-75 236
Msa1132870 AT1G79580.3 69.281 153 45 1 7 159 17 167 2.04e-75 237
Msa1132870 AT1G79580.5 69.281 153 45 1 7 159 17 167 2.04e-75 237
Msa1132870 AT1G79580.4 69.281 153 45 1 7 159 17 167 2.04e-75 237
Msa1132870 AT1G79580.2 69.281 153 45 1 7 159 17 167 2.04e-75 237
Msa1132870 AT1G79580.1 69.281 153 45 1 7 159 17 167 2.04e-75 237
Msa1132870 AT3G18400.1 56.688 157 64 2 6 162 4 156 1.29e-61 200
Msa1132870 AT2G24430.2 56.688 157 64 2 7 162 16 169 1.33e-59 194
Msa1132870 AT2G24430.1 56.688 157 64 2 7 162 16 169 1.33e-59 194
Msa1132870 AT5G61430.1 41.667 264 130 9 7 256 16 269 6.84e-59 193
Msa1132870 AT5G39610.1 55.488 164 66 3 7 167 20 179 7.29e-58 189
Msa1132870 AT3G04060.1 52.500 160 70 2 7 163 20 176 6.86e-57 188
Msa1132870 AT3G17730.1 54.902 153 66 3 7 158 6 156 1.13e-56 185
Msa1132870 AT5G18270.1 50.888 169 76 3 7 171 21 186 2.19e-56 187
Msa1132870 AT5G18270.2 50.888 169 76 3 7 171 21 186 3.35e-56 186
Msa1132870 AT5G07680.2 42.238 277 123 10 7 265 3 260 5.75e-56 185
Msa1132870 AT5G07680.1 42.446 278 121 10 7 265 17 274 9.75e-56 185
Msa1132870 AT1G65910.1 55.556 153 65 3 7 158 6 156 1.01e-55 192
Msa1132870 AT5G53950.1 54.777 157 64 3 6 158 16 169 2.23e-55 185
Msa1132870 AT1G76420.1 55.556 153 64 2 7 158 22 171 2.43e-55 184
Msa1132870 AT3G29035.1 50.556 180 82 3 7 183 24 199 3.60e-55 183
Msa1132870 AT1G69490.1 51.807 166 69 4 5 164 7 167 4.63e-54 179
Msa1132870 AT1G54330.1 53.750 160 70 3 7 166 6 161 7.79e-54 179
Msa1132870 AT5G46590.1 50.000 168 78 3 5 167 4 170 9.02e-54 179
Msa1132870 AT5G17260.1 39.773 264 140 7 7 254 6 266 1.15e-53 184
Msa1132870 AT1G01720.1 46.448 183 87 4 1 178 1 177 5.63e-53 177
Msa1132870 AT3G12977.1 51.923 156 69 3 5 158 16 167 7.42e-53 176
Msa1132870 AT3G03200.1 53.205 156 69 3 7 160 6 159 7.88e-53 181
Msa1132870 AT3G10480.1 54.902 153 63 4 9 158 29 178 9.24e-53 181
Msa1132870 AT3G10490.1 51.592 157 70 4 5 158 25 178 9.66e-53 174
Msa1132870 AT4G35580.1 53.595 153 68 3 7 158 9 159 1.05e-52 182
Msa1132870 AT4G35580.3 53.595 153 68 3 7 158 9 159 1.43e-52 182
Msa1132870 AT4G35580.2 53.595 153 68 3 7 158 9 159 1.46e-52 182
Msa1132870 AT3G15170.1 54.839 155 63 3 5 155 18 169 1.55e-52 176
Msa1132870 AT3G04070.2 49.123 171 70 5 5 162 8 174 3.30e-52 176
Msa1132870 AT5G46590.2 57.576 132 55 1 5 136 4 134 5.73e-52 174
Msa1132870 AT3G10480.2 54.248 153 63 4 9 158 29 177 5.94e-52 178
Msa1132870 AT2G43000.1 50.658 152 69 3 9 158 20 167 6.00e-52 174
Msa1132870 AT1G33060.2 52.288 153 70 3 7 158 24 174 7.94e-52 182
Msa1132870 AT1G33060.1 52.288 153 70 3 7 158 24 174 8.03e-52 182
Msa1132870 AT5G39820.1 44.262 183 76 3 7 166 20 199 1.60e-51 174
Msa1132870 AT3G10490.2 52.941 153 66 4 9 158 29 178 1.77e-51 177
Msa1132870 AT1G56010.2 39.592 245 119 9 5 234 17 247 3.25e-51 173
Msa1132870 AT1G61110.1 48.503 167 68 3 6 158 15 177 7.10e-51 172
Msa1132870 AT3G04070.1 47.312 186 67 6 5 162 8 190 2.36e-50 172
Msa1132870 AT1G77450.1 47.305 167 79 3 6 168 9 170 1.51e-49 167
Msa1132870 AT4G27410.2 49.673 153 72 3 7 158 14 162 1.62e-49 168
Msa1132870 AT4G10350.2 72.477 109 28 2 52 159 7 114 1.75e-49 167
Msa1132870 AT5G63790.2 44.615 195 90 6 6 194 59 241 3.01e-49 168
Msa1132870 AT5G63790.1 44.615 195 90 6 6 194 49 231 3.07e-49 167
Msa1132870 AT1G26870.1 45.977 174 78 4 9 170 18 187 3.45e-49 170
Msa1132870 AT5G24590.2 50.000 158 77 2 3 159 9 165 7.89e-49 170
Msa1132870 AT4G17980.1 44.500 200 86 7 5 183 4 199 1.63e-48 164
Msa1132870 AT5G04410.1 51.282 156 71 4 5 158 7 159 1.65e-48 172
Msa1132870 AT5G08790.1 40.741 216 101 6 6 215 6 200 1.89e-48 165
Msa1132870 AT4G17980.2 44.500 200 86 7 5 183 4 199 2.59e-48 164
Msa1132870 AT4G28530.1 48.256 172 64 5 5 158 8 172 4.14e-48 166
Msa1132870 AT3G49530.2 49.020 153 76 2 7 158 13 164 4.75e-48 167
Msa1132870 AT3G15500.1 48.734 158 74 4 7 162 14 166 5.30e-48 164
Msa1132870 AT3G15510.1 47.879 165 70 3 11 162 21 182 8.95e-48 165
Msa1132870 AT3G10500.1 49.677 155 75 3 5 158 7 159 9.07e-48 169
Msa1132870 AT2G33480.1 47.097 155 74 3 6 159 14 161 1.23e-47 162
Msa1132870 AT3G49530.1 49.020 153 76 2 7 158 13 164 1.41e-47 167
Msa1132870 AT1G52890.1 46.988 166 81 4 7 170 14 174 1.48e-47 163
Msa1132870 AT5G13180.1 45.342 161 81 2 2 161 9 163 3.32e-47 160
Msa1132870 AT3G10480.3 45.789 190 64 6 5 158 25 211 6.85e-47 166
Msa1132870 AT4G27410.3 46.108 167 74 4 7 158 14 179 6.96e-47 161
Msa1132870 AT1G32510.1 44.262 183 93 3 5 179 4 185 9.90e-47 160
Msa1132870 AT2G33480.2 46.753 154 74 3 6 159 14 159 2.22e-46 159
Msa1132870 AT2G18060.2 43.983 241 100 12 88 309 2 226 2.74e-46 159
Msa1132870 AT2G02450.1 46.711 152 77 2 7 158 51 198 1.67e-45 160
Msa1132870 AT2G02450.2 46.711 152 77 2 7 158 51 198 2.05e-45 160
Msa1132870 AT1G34190.1 49.045 157 71 6 9 161 18 169 4.09e-45 162
Msa1132870 AT1G34180.3 45.455 154 81 3 9 161 18 169 7.83e-45 159
Msa1132870 AT1G34180.1 45.455 154 81 3 9 161 18 169 3.49e-44 160
Msa1132870 AT1G52880.1 47.305 167 73 3 11 165 21 184 4.38e-44 154
Msa1132870 AT2G17040.1 43.210 162 81 5 9 168 8 160 1.83e-43 151
Msa1132870 AT3G12910.1 44.509 173 71 6 9 162 23 189 5.14e-42 148
Msa1132870 AT1G34180.4 43.452 168 76 5 9 161 18 181 9.85e-42 151
Msa1132870 AT1G34180.2 43.452 168 76 5 9 161 18 181 3.70e-41 152
Msa1132870 AT5G09330.5 45.570 158 77 5 5 158 4 156 4.76e-41 150
Msa1132870 AT5G09330.2 45.570 158 77 5 5 158 4 156 4.76e-41 150
Msa1132870 AT5G09330.4 45.570 158 77 5 5 158 4 156 4.76e-41 150
Msa1132870 AT5G09330.3 45.570 158 77 5 5 158 4 156 4.76e-41 150
Msa1132870 AT5G09330.1 45.570 158 77 5 5 158 4 156 4.76e-41 150
Msa1132870 AT5G64060.1 42.675 157 83 5 5 158 4 156 9.23e-41 146
Msa1132870 AT5G04395.1 46.358 151 69 3 5 143 26 176 1.90e-40 141
Msa1132870 AT2G27300.1 42.262 168 86 5 5 170 12 170 2.44e-40 145
Msa1132870 AT5G22290.1 42.581 155 81 3 5 159 19 165 1.81e-39 143
Msa1132870 AT3G44290.2 46.825 126 64 2 9 134 16 138 1.53e-37 134
Msa1132870 AT5G61430.2 38.426 216 109 9 55 256 1 206 2.55e-37 135
Msa1132870 AT3G44290.1 46.825 126 64 2 9 134 16 138 1.18e-36 135
Msa1132870 AT1G56010.1 40.217 184 85 7 65 234 8 180 2.44e-35 129
Msa1132870 AT3G12977.2 54.128 109 44 3 52 158 10 114 4.87e-35 128
Msa1132870 AT1G32870.2 43.871 155 80 4 7 158 10 160 6.42e-34 131
Msa1132870 AT1G32870.1 43.871 155 80 4 7 158 10 160 7.73e-34 131
Msa1132870 AT1G32870.3 43.871 155 80 4 7 158 46 196 1.23e-33 130
Msa1132870 AT2G33480.3 47.573 103 52 2 58 159 3 104 3.68e-29 112
Msa1132870 AT3G44350.2 34.706 170 99 7 10 172 8 172 8.00e-28 109
Msa1132870 AT5G22380.1 36.774 155 88 5 10 156 8 160 2.08e-27 108
Msa1132870 AT4G01550.1 39.869 153 82 5 10 158 7 153 6.07e-27 111
Msa1132870 AT3G44350.1 37.762 143 80 5 10 146 8 147 8.57e-27 104
Msa1132870 AT4G01520.1 37.500 152 86 5 8 155 5 151 1.51e-26 107
Msa1132870 AT4G28530.2 45.133 113 41 3 5 100 8 116 1.81e-25 104
Msa1132870 AT4G01540.4 37.333 150 85 5 10 155 7 151 2.03e-25 105
Msa1132870 AT4G01540.3 37.333 150 85 5 10 155 7 151 2.27e-25 106
Msa1132870 AT4G01540.1 37.333 150 85 5 10 155 7 151 3.81e-25 106
Msa1132870 AT4G01540.2 37.333 150 85 5 10 155 7 151 3.93e-25 105
Msa1132870 AT1G02230.1 42.484 153 75 8 8 155 4 148 1.34e-24 103
Msa1132870 AT5G64530.1 33.929 168 80 5 7 158 3 155 2.84e-24 98.6
Msa1132870 AT5G64530.2 39.695 131 63 4 7 136 3 118 1.94e-23 95.5
Msa1132870 AT2G43000.2 48.315 89 43 2 72 158 2 89 3.74e-23 95.5
Msa1132870 AT3G04420.2 37.662 154 86 5 8 158 4 150 1.02e-22 96.7
Msa1132870 AT1G02250.1 43.511 131 66 5 8 134 4 130 1.24e-22 97.8
Msa1132870 AT3G04420.1 37.662 154 86 5 8 158 4 150 2.49e-22 96.7
Msa1132870 AT3G10490.4 54.430 79 31 3 83 158 2 78 1.19e-21 94.7
Msa1132870 AT3G10490.3 54.430 79 31 3 83 158 2 78 1.19e-21 94.7
Msa1132870 AT1G01010.1 28.627 255 150 11 10 252 6 240 1.44e-19 89.7
Msa1132870 AT5G50820.1 36.301 146 66 6 1 136 10 138 8.01e-19 83.6
Msa1132870 AT1G02220.1 39.695 131 70 5 7 134 3 127 2.93e-18 85.5
Msa1132870 AT3G56530.1 28.947 152 102 4 7 156 52 199 5.17e-16 78.2
Msa1132870 AT5G14000.1 28.834 163 102 5 1 159 9 161 3.64e-14 70.9
Msa1132870 AT5G14000.2 30.714 140 85 4 1 136 9 140 9.88e-14 68.6
Msa1132870 AT5G22290.2 40.845 71 36 2 89 159 2 66 4.40e-12 65.9
Msa1132870 AT3G04430.1 35.075 134 71 5 13 134 6 135 4.42e-12 64.7

Find 89 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCACCAATTTCTGATTCTT+TGG 0.195138 7_3:-85711384 None:intergenic
CAAAGTATGCAAATGCTTTA+TGG 0.217473 7_3:+85711200 Msa1132870:CDS
ATATTTAACAATGCTTTATA+AGG 0.230877 7_3:-85711583 None:intergenic
TATTAATATTATAATATTAT+AGG 0.239089 7_3:+85711493 Msa1132870:three_prime_UTR
CATGAAGAATTATGCAAAAT+AGG 0.241059 7_3:+85710420 Msa1132870:intron
TCATAAGATTGTTGAATAAA+AGG 0.248907 7_3:+85707404 Msa1132870:five_prime_UTR
AGCTGCGTATAAATGATATA+TGG 0.251535 7_3:-85711788 None:intergenic
TCAAGATCAAGATGCTTCTA+AGG 0.257448 7_3:+85711304 Msa1132870:CDS
CATTGTTAAATATTCTTATC+AGG 0.271722 7_3:+85711593 Msa1132870:three_prime_UTR
TCATTCCAATGAGACAAATA+TGG 0.283809 7_3:-85710575 None:intergenic
TGTTGGTATGATGCATTATA+AGG 0.290690 7_3:-85711002 None:intergenic
GAGCTACAAAAGCAGGATTC+TGG 0.293307 7_3:+85710517 Msa1132870:CDS
ACTAAAAGTAAGGTAATTAA+TGG 0.309464 7_3:-85707327 None:intergenic
CGCTTAGAAACAAATGAAAA+TGG 0.311609 7_3:+85710669 Msa1132870:CDS
AGCTACAACAATGAGGAAAA+TGG 0.315574 7_3:+85710896 Msa1132870:CDS
ATTAATATTATAATATTATA+GGG 0.322258 7_3:+85711494 Msa1132870:three_prime_UTR
TCAAACCATATTTGTCTCAT+TGG 0.325097 7_3:+85710570 Msa1132870:CDS
ACTACACATTGGAGTCTTTA+CGG 0.325597 7_3:+85707488 Msa1132870:five_prime_UTR
AAGACTCTTGTCTTCTATAA+AGG 0.338384 7_3:+85710600 Msa1132870:CDS
TGGAGATGTTTGAATGAAAT+AGG 0.341751 7_3:-85707210 None:intergenic
CAATCAGATTTCTGACCATT+AGG 0.344528 7_3:-85710630 None:intergenic
TATCAGTTGCAGGGTATTAA+TGG 0.356014 7_3:-85711643 None:intergenic
GCATTTGCATACTTTGTTGC+TGG 0.361225 7_3:-85711193 None:intergenic
TAGACAAATTTGTTGCTTCT+CGG 0.362135 7_3:+85711276 Msa1132870:CDS
GAATCCAAAGAATCAGAAAT+TGG 0.368800 7_3:+85711380 Msa1132870:CDS
TTTCTAGTTGTGGAAGTTGT+AGG 0.384400 7_3:-85711109 None:intergenic
GCAACTTAAATATCAGTTGC+AGG 0.392437 7_3:-85711653 None:intergenic
GATGAGAAGAAACTCTGCTT+GGG 0.418707 7_3:-85710977 None:intergenic
CGGAGAGCAAATCAAGGTTA+AGG 0.423351 7_3:+85707508 Msa1132870:five_prime_UTR
AGATTGAAGTCACGTGTTCC+TGG 0.423511 7_3:-85711406 None:intergenic
GGTAGTGTTGTTGTTGATGT+TGG 0.424074 7_3:-85711019 None:intergenic
TATTTAACAATGCTTTATAA+GGG 0.425291 7_3:-85711582 None:intergenic
CCACGTGTCAATCTGACAAT+TGG 0.427216 7_3:-85711435 None:intergenic
ATTGCAAATTTATAGGAAGA+AGG 0.439363 7_3:+85710840 Msa1132870:intron
ATTAATGGCAATTCATTCCT+CGG 0.439769 7_3:-85707312 None:intergenic
AATTTCTCACACGTTCCTCC+TGG 0.441033 7_3:+85710047 Msa1132870:CDS
TTTCAGTGATTCTATTCCTA+GGG 0.456563 7_3:+85707266 Msa1132870:five_prime_UTR
CAAATTTATAGGAAGAAGGA+TGG 0.460174 7_3:+85710844 Msa1132870:intron
TCTAGAAAGCACTAAAAGTA+AGG 0.469030 7_3:-85707337 None:intergenic
GCTGCGTATAAATGATATAT+GGG 0.469901 7_3:-85711787 None:intergenic
TCAATGACTCAAGAACAATA+TGG 0.470954 7_3:+85711170 Msa1132870:CDS
GATGTTTGAATGAAATAGGT+TGG 0.474345 7_3:-85707206 None:intergenic
ACAACACTACCCTTGCAAAC+AGG 0.477080 7_3:+85711031 Msa1132870:CDS
AGAATCAGAAATTGGTGGCC+AGG 0.480792 7_3:+85711388 Msa1132870:CDS
TATAAAGGAAGAGCACCTAA+TGG 0.497610 7_3:+85710615 Msa1132870:CDS
CTAATGGTCAGAAATCTGAT+TGG 0.500760 7_3:+85710631 Msa1132870:CDS
GTCGGTTTCTCTTGCACAAG+AGG 0.507422 7_3:-85711621 None:intergenic
GCAGGATTCTGGAAAGCTAC+AGG 0.509600 7_3:+85710528 Msa1132870:CDS
TTAATGGCAATTCATTCCTC+GGG 0.510764 7_3:-85707311 None:intergenic
CAAGTTCTTCATCGGTCGGA+TGG 0.514498 7_3:-85710079 None:intergenic
ACAAATAGAGCTACAAAAGC+AGG 0.518256 7_3:+85710510 Msa1132870:CDS
TGATGAGAAGAAACTCTGCT+TGG 0.519246 7_3:-85710978 None:intergenic
CTACCCTTGCAAACAGGAGT+TGG 0.522959 7_3:+85711037 Msa1132870:CDS
AGCATTGCAAAGGAGAATTG+AGG 0.523842 7_3:-85711133 None:intergenic
GTTGGTATGATGCATTATAA+GGG 0.529739 7_3:-85711001 None:intergenic
TGATCCAACTCCTGTTTGCA+AGG 0.531456 7_3:-85711041 None:intergenic
GTCGGATGGAAACGAAATCC+AGG 0.536029 7_3:-85710065 None:intergenic
TCTCTATAAGATTGAGCCAT+GGG 0.539211 7_3:+85710169 Msa1132870:CDS
AACTTGTTGATCACTACCTC+AGG 0.545767 7_3:+85710096 Msa1132870:CDS
GTCAATCTGACAATTGGAGT+TGG 0.548688 7_3:-85711429 None:intergenic
CAATGATTTACAAGCAGTAG+TGG 0.549631 7_3:+85711229 Msa1132870:CDS
TGAAAATGGAACTACTCCTC+AGG 0.553926 7_3:+85710683 Msa1132870:CDS
ACAAAATCAATCAAATCCCT+AGG 0.564107 7_3:-85707282 None:intergenic
TAAGTACCTTGTAGATCCCA+TGG 0.571291 7_3:-85710185 None:intergenic
AGTTGCAGGGTATTAATGGT+CGG 0.571407 7_3:-85711639 None:intergenic
CAAGATCAAGATGCTTCTAA+GGG 0.572925 7_3:+85711305 Msa1132870:CDS
CTATTTGTACGACTGCTCGT+TGG 0.573237 7_3:-85710495 None:intergenic
TCTTTACGGAGAGCAAATCA+AGG 0.577015 7_3:+85707502 Msa1132870:five_prime_UTR
AAGAGAAGTTGAGAAAGTGA+AGG 0.578363 7_3:-85707243 None:intergenic
TAGTGGAGCAATCAAACGAA+TGG 0.580549 7_3:+85711246 Msa1132870:CDS
ATCTCTATAAGATTGAGCCA+TGG 0.582288 7_3:+85710168 Msa1132870:CDS
GAAGTGATGAACAAACTGAA+TGG 0.585532 7_3:+85710442 Msa1132870:CDS
ATCAGATCTACACTACACAT+TGG 0.591222 7_3:+85707477 Msa1132870:five_prime_UTR
GTGATCAACAAGTTCTTCAT+CGG 0.592849 7_3:-85710087 None:intergenic
AAATTTATAGGAAGAAGGAT+GGG 0.606307 7_3:+85710845 Msa1132870:intron
GATCCAACTCCTGTTTGCAA+GGG 0.606580 7_3:-85711040 None:intergenic
AACTAGTAGTTATTGTAATG+TGG 0.607704 7_3:+85711328 Msa1132870:CDS
TCAACAAGTTCTTCATCGGT+CGG 0.617043 7_3:-85710083 None:intergenic
CAACTTAAATATCAGTTGCA+GGG 0.620687 7_3:-85711652 None:intergenic
AAATGGACGATTCACCATGT+TGG 0.625967 7_3:+85710913 Msa1132870:CDS
ATGAGAAGAAACTCTGCTTG+GGG 0.635709 7_3:-85710976 None:intergenic
ATTGAGCCATGGGATCTACA+AGG 0.653934 7_3:+85710179 Msa1132870:CDS
TCCAAAGAATCAGAAATTGG+TGG 0.654889 7_3:+85711383 Msa1132870:CDS
AACGAATAGCTACAACAATG+AGG 0.658581 7_3:+85710889 Msa1132870:CDS
AGTATGCAAATGCTTTATGG+TGG 0.663879 7_3:+85711203 Msa1132870:CDS
GATGATAATGAGCATTGCAA+AGG 0.667877 7_3:-85711143 None:intergenic
CCAATTGTCAGATTGACACG+TGG 0.699000 7_3:+85711435 Msa1132870:CDS
ACTTGATCATCATACCAACA+TGG 0.713321 7_3:-85710927 None:intergenic
GGATGGAAACGAAATCCAGG+AGG 0.779067 7_3:-85710062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATATTATAATATTAT+AGG + chr7_3:85711493-85711512 Msa1132870:three_prime_UTR 0.0%
!! ATTAATATTATAATATTATA+GGG + chr7_3:85711494-85711513 Msa1132870:three_prime_UTR 0.0%
!! ATATGTTAAGAAATTTAAAA+TGG + chr7_3:85707973-85707992 Msa1132870:intron 10.0%
!! TTAATTATAATCTACAAAAT+AGG - chr7_3:85708594-85708613 None:intergenic 10.0%
!! TTAACTCAACTTTATATAAT+CGG - chr7_3:85707650-85707669 None:intergenic 15.0%
!! TGTAGATTATAATTAATGTT+TGG + chr7_3:85708598-85708617 Msa1132870:intron 15.0%
!! AATAATCTTAATGATCTTAT+AGG - chr7_3:85708629-85708648 None:intergenic 15.0%
!!! AATTCATTTTTCAATTCTTA+TGG + chr7_3:85708759-85708778 Msa1132870:intron 15.0%
!!! ATGCATTTTAAAATTTGAAA+TGG - chr7_3:85709379-85709398 None:intergenic 15.0%
!! CCAAAAAAAATACAAATTAT+AGG - chr7_3:85709424-85709443 None:intergenic 15.0%
!!! CCTATAATTTGTATTTTTTT+TGG + chr7_3:85709421-85709440 Msa1132870:intron 15.0%
!!! CTTAATTTTTATAATTTCGT+CGG + chr7_3:85709511-85709530 Msa1132870:intron 15.0%
!!! TTAATTTTTATAATTTCGTC+GGG + chr7_3:85709512-85709531 Msa1132870:intron 15.0%
!! CAAGTTAATTAAAATTCAAT+AGG - chr7_3:85710820-85710839 None:intergenic 15.0%
!! TATTTAACAATGCTTTATAA+GGG - chr7_3:85711585-85711604 None:intergenic 15.0%
!! ATATTTAACAATGCTTTATA+AGG - chr7_3:85711586-85711605 None:intergenic 15.0%
!! ACTAAAAGTAAGGTAATTAA+TGG - chr7_3:85707330-85707349 None:intergenic 20.0%
!! TCATAAGATTGTTGAATAAA+AGG + chr7_3:85707404-85707423 Msa1132870:five_prime_UTR 20.0%
!!! TTAAAATGGTAAGTTTGTTT+TGG + chr7_3:85707987-85708006 Msa1132870:intron 20.0%
!!! TTGCTACATATATTTTGAAA+AGG + chr7_3:85708127-85708146 Msa1132870:intron 20.0%
!! GATAAAACAATACTATAATG+TGG - chr7_3:85708445-85708464 None:intergenic 20.0%
!! TTATAATCTACAAAATAGGT+TGG - chr7_3:85708590-85708609 None:intergenic 20.0%
!!! TCTTCTTTTTCAAATAAATG+AGG + chr7_3:85708898-85708917 Msa1132870:intron 20.0%
!! TTGGATAGAAAAATAAATGT+AGG + chr7_3:85708930-85708949 Msa1132870:intron 20.0%
!! TGGATAGAAAAATAAATGTA+GGG + chr7_3:85708931-85708950 Msa1132870:intron 20.0%
!! TTACAAACTCAACATTTATT+TGG - chr7_3:85708967-85708986 None:intergenic 20.0%
!!! TATACTTGAAAATAGTTTTG+AGG - chr7_3:85709049-85709068 None:intergenic 20.0%
!! TTTAATATAGTCATATGTGT+AGG + chr7_3:85709120-85709139 Msa1132870:intron 20.0%
!! AATTTCTCAAGAAATAAAGA+TGG - chr7_3:85709331-85709350 None:intergenic 20.0%
!!! ATTTTGTTGTCTCTTTTAAT+AGG + chr7_3:85709348-85709367 Msa1132870:intron 20.0%
!! AAGTACTATAAATGATTTGA+AGG + chr7_3:85709455-85709474 Msa1132870:intron 20.0%
!!! TAATTTTTATAATTTCGTCG+GGG + chr7_3:85709513-85709532 Msa1132870:intron 20.0%
!! ACTAAATTCATGTCTAAATA+AGG - chr7_3:85709726-85709745 None:intergenic 20.0%
!! ATAAGAAGTCCAAAAAAAAA+AGG - chr7_3:85709810-85709829 None:intergenic 20.0%
!! TCTCTTATATATAAAATCGA+AGG + chr7_3:85710307-85710326 Msa1132870:intron 20.0%
!! ATTATAAGTATTATTACCTG+AGG - chr7_3:85710702-85710721 None:intergenic 20.0%
!!! ACACAACTATTGATTTTATT+AGG + chr7_3:85710784-85710803 Msa1132870:intron 20.0%
!! TAACTTGATTGCAAATTTAT+AGG + chr7_3:85710833-85710852 Msa1132870:intron 20.0%
!! TAACTCCTACAAAAATTAAA+AGG + chr7_3:85711529-85711548 Msa1132870:three_prime_UTR 20.0%
!! AACTCCTACAAAAATTAAAA+GGG + chr7_3:85711530-85711549 Msa1132870:three_prime_UTR 20.0%
!!! AATACCCTTTTAATTTTTGT+AGG - chr7_3:85711537-85711556 None:intergenic 20.0%
!!! TACAAAAATTAAAAGGGTAT+TGG + chr7_3:85711536-85711555 Msa1132870:three_prime_UTR 20.0%
!! CATTGTTAAATATTCTTATC+AGG + chr7_3:85711593-85711612 Msa1132870:three_prime_UTR 20.0%
! AAAGTGAAGGAAAAAGAAAA+TGG - chr7_3:85707233-85707252 None:intergenic 25.0%
!! TTTCTAGATTTGTCTCTTTT+TGG + chr7_3:85707352-85707371 Msa1132870:five_prime_UTR 25.0%
! CAAAATATATGTAGCAACTA+GGG - chr7_3:85708124-85708143 None:intergenic 25.0%
! TCAAAATATATGTAGCAACT+AGG - chr7_3:85708125-85708144 None:intergenic 25.0%
! ATCCAATAGTACATTTCTTA+TGG + chr7_3:85708202-85708221 Msa1132870:intron 25.0%
! AATGCTAATTAAATGTCACT+TGG + chr7_3:85708251-85708270 Msa1132870:intron 25.0%
!! ATGCTAATTAAATGTCACTT+GGG + chr7_3:85708252-85708271 Msa1132870:intron 25.0%
! TGAAACAAAAGGAATGAAAA+GGG - chr7_3:85708381-85708400 None:intergenic 25.0%
! AACAATACTATAATGTGGTT+GGG - chr7_3:85708440-85708459 None:intergenic 25.0%
! AAACAATACTATAATGTGGT+TGG - chr7_3:85708441-85708460 None:intergenic 25.0%
! AATTTAGTCCATTAATGTTC+TGG - chr7_3:85708553-85708572 None:intergenic 25.0%
!!! TTTGTTTCTTTTTCCTTTCA+AGG + chr7_3:85708708-85708727 Msa1132870:intron 25.0%
!!! TTGTTTCTTTTTCCTTTCAA+GGG + chr7_3:85708709-85708728 Msa1132870:intron 25.0%
!!! ATAAATGAGGAGTATTTTGT+TGG + chr7_3:85708911-85708930 Msa1132870:intron 25.0%
! TTGTGTATAAATCTGAGAAT+CGG + chr7_3:85709075-85709094 Msa1132870:intron 25.0%
! CAAATTCGCTAAAAACAAAA+AGG - chr7_3:85709208-85709227 None:intergenic 25.0%
! TGAAGGTAAATTAACAAACT+TGG + chr7_3:85709472-85709491 Msa1132870:intron 25.0%
! TTACCTCAATCACTAAATAA+AGG - chr7_3:85709543-85709562 None:intergenic 25.0%
! TGATTGAGGTAACATTTAAT+AGG + chr7_3:85709551-85709570 Msa1132870:intron 25.0%
! GATTGAGGTAACATTTAATA+GGG + chr7_3:85709552-85709571 Msa1132870:intron 25.0%
!!! ATCTTTTGACTCTTTTTAAG+AGG + chr7_3:85709621-85709640 Msa1132870:intron 25.0%
!!! AATGTCGAGTCATTTTAATA+TGG - chr7_3:85709648-85709667 None:intergenic 25.0%
! TAGTTTAATTCATGCTTTCT+TGG + chr7_3:85709742-85709761 Msa1132870:intron 25.0%
!!! TTACTCTGACCTTTTTTTTT+TGG + chr7_3:85709798-85709817 Msa1132870:intron 25.0%
! TGTATTGAAGAGAACTATAA+AGG - chr7_3:85709877-85709896 None:intergenic 25.0%
!!! CCAACTTTATTTTATAAGAC+CGG - chr7_3:85710221-85710240 None:intergenic 25.0%
!! CGGTCTTATAAAATAAAGTT+GGG + chr7_3:85710219-85710238 Msa1132870:intron 25.0%
! CATGAAGAATTATGCAAAAT+AGG + chr7_3:85710420-85710439 Msa1132870:intron 25.0%
!!! CTTGTTTTTCAGAAAAAGAA+AGG - chr7_3:85710742-85710761 None:intergenic 25.0%
! ATTGCAAATTTATAGGAAGA+AGG + chr7_3:85710840-85710859 Msa1132870:intron 25.0%
! AAATTTATAGGAAGAAGGAT+GGG + chr7_3:85710845-85710864 Msa1132870:intron 25.0%
! AACTAGTAGTTATTGTAATG+TGG + chr7_3:85711328-85711347 Msa1132870:CDS 25.0%
GATGTTTGAATGAAATAGGT+TGG - chr7_3:85707209-85707228 None:intergenic 30.0%
TGGAGATGTTTGAATGAAAT+AGG - chr7_3:85707213-85707232 None:intergenic 30.0%
! TTTTCAGTGATTCTATTCCT+AGG + chr7_3:85707265-85707284 Msa1132870:five_prime_UTR 30.0%
TTTCAGTGATTCTATTCCTA+GGG + chr7_3:85707266-85707285 Msa1132870:five_prime_UTR 30.0%
ACAAAATCAATCAAATCCCT+AGG - chr7_3:85707285-85707304 None:intergenic 30.0%
ATTAATGGCAATTCATTCCT+CGG - chr7_3:85707315-85707334 None:intergenic 30.0%
!! TCTAGAAAGCACTAAAAGTA+AGG - chr7_3:85707340-85707359 None:intergenic 30.0%
!!! ATTTGTCTCTTTTTGGTTGT+TGG + chr7_3:85707359-85707378 Msa1132870:five_prime_UTR 30.0%
! ATTTTGTGCTGCAAATTAAG+AGG + chr7_3:85707446-85707465 Msa1132870:five_prime_UTR 30.0%
CTACATACAAACACAATTTC+AGG - chr7_3:85707607-85707626 None:intergenic 30.0%
TAACAGTCAAAGTTGTGAAT+TGG - chr7_3:85707811-85707830 None:intergenic 30.0%
!! TGTAAGATGTTTGATTTGTC+TGG - chr7_3:85707893-85707912 None:intergenic 30.0%
CATGAGATAATAAATGATCG+CGG - chr7_3:85708180-85708199 None:intergenic 30.0%
GTCCATAAGAAATGTACTAT+TGG - chr7_3:85708207-85708226 None:intergenic 30.0%
! TGCTAATTAAATGTCACTTG+GGG + chr7_3:85708253-85708272 Msa1132870:intron 30.0%
TTAAACGTTAGGTACATTGA+TGG - chr7_3:85708343-85708362 None:intergenic 30.0%
GTGAAACAAAAGGAATGAAA+AGG - chr7_3:85708382-85708401 None:intergenic 30.0%
ATTGTCTGATGTGAAACAAA+AGG - chr7_3:85708392-85708411 None:intergenic 30.0%
CATCATTGCATTCTACAAAA+GGG + chr7_3:85708657-85708676 Msa1132870:intron 30.0%
!! GTCGTTTTATGCTATTAACA+TGG + chr7_3:85709155-85709174 Msa1132870:intron 30.0%
TTCTCAAGAAATAAAGATGG+AGG - chr7_3:85709328-85709347 None:intergenic 30.0%
!! AGTTTCTAGCTATGTCAATT+AGG - chr7_3:85709837-85709856 None:intergenic 30.0%
GTTCTCTTCAATACAAATCA+TGG + chr7_3:85709882-85709901 Msa1132870:intron 30.0%
GGAAAAAGATAGCTTCTAAA+AGG + chr7_3:85710117-85710136 Msa1132870:CDS 30.0%
!!! CTTTATTTTATAAGACCGGA+AGG - chr7_3:85710217-85710236 None:intergenic 30.0%
! CCGGTCTTATAAAATAAAGT+TGG + chr7_3:85710218-85710237 Msa1132870:intron 30.0%
TCAAACCATATTTGTCTCAT+TGG + chr7_3:85710570-85710589 Msa1132870:CDS 30.0%
TCATTCCAATGAGACAAATA+TGG - chr7_3:85710578-85710597 None:intergenic 30.0%
AAGACTCTTGTCTTCTATAA+AGG + chr7_3:85710600-85710619 Msa1132870:CDS 30.0%
CGCTTAGAAACAAATGAAAA+TGG + chr7_3:85710669-85710688 Msa1132870:CDS 30.0%
CAAATTTATAGGAAGAAGGA+TGG + chr7_3:85710844-85710863 Msa1132870:intron 30.0%
GTTGGTATGATGCATTATAA+GGG - chr7_3:85711004-85711023 None:intergenic 30.0%
TGTTGGTATGATGCATTATA+AGG - chr7_3:85711005-85711024 None:intergenic 30.0%
TCAATGACTCAAGAACAATA+TGG + chr7_3:85711170-85711189 Msa1132870:CDS 30.0%
CAAAGTATGCAAATGCTTTA+TGG + chr7_3:85711200-85711219 Msa1132870:CDS 30.0%
!! TAGACAAATTTGTTGCTTCT+CGG + chr7_3:85711276-85711295 Msa1132870:CDS 30.0%
GAATCCAAAGAATCAGAAAT+TGG + chr7_3:85711380-85711399 Msa1132870:CDS 30.0%
CAACTTAAATATCAGTTGCA+GGG - chr7_3:85711655-85711674 None:intergenic 30.0%
GCTGCGTATAAATGATATAT+GGG - chr7_3:85711790-85711809 None:intergenic 30.0%
AAGAGAAGTTGAGAAAGTGA+AGG - chr7_3:85707246-85707265 None:intergenic 35.0%
! TTGATTTTGTTCAATTCCCG+AGG + chr7_3:85707295-85707314 Msa1132870:five_prime_UTR 35.0%
TTAATGGCAATTCATTCCTC+GGG - chr7_3:85707314-85707333 None:intergenic 35.0%
ATCAGATCTACACTACACAT+TGG + chr7_3:85707477-85707496 Msa1132870:five_prime_UTR 35.0%
ACTACACATTGGAGTCTTTA+CGG + chr7_3:85707488-85707507 Msa1132870:five_prime_UTR 35.0%
TGACTCTAATCTGTGTGTTT+CGG + chr7_3:85708291-85708310 Msa1132870:intron 35.0%
! TAGGTACATTGATGGACATA+TGG - chr7_3:85708335-85708354 None:intergenic 35.0%
GTGAGCATGATTTAAACGTT+AGG - chr7_3:85708354-85708373 None:intergenic 35.0%
ATAATGTGGTTGGGACAATA+GGG - chr7_3:85708431-85708450 None:intergenic 35.0%
TATAATGTGGTTGGGACAAT+AGG - chr7_3:85708432-85708451 None:intergenic 35.0%
CTCGTAAACCAGAACATTAA+TGG + chr7_3:85708542-85708561 Msa1132870:intron 35.0%
GCATCATTGCATTCTACAAA+AGG + chr7_3:85708656-85708675 Msa1132870:intron 35.0%
! CTTTTTCCTTTCAAGGGAAA+AGG + chr7_3:85708715-85708734 Msa1132870:intron 35.0%
! TTAACTCCTTTTCCCTTGAA+AGG - chr7_3:85708724-85708743 None:intergenic 35.0%
AAAAGGATGAATCTGTGAAC+AGG - chr7_3:85709191-85709210 None:intergenic 35.0%
! TTTTTATAATTTCGTCGGGG+AGG + chr7_3:85709516-85709535 Msa1132870:intron 35.0%
! GGTCCTTTATTTAGTGATTG+AGG + chr7_3:85709537-85709556 Msa1132870:intron 35.0%
GTCTAAATAAGGTATAGAGC+TGG - chr7_3:85709715-85709734 None:intergenic 35.0%
CTTCCATTTCAGAATAACAC+AGG - chr7_3:85709941-85709960 None:intergenic 35.0%
GTGATCAACAAGTTCTTCAT+CGG - chr7_3:85710090-85710109 None:intergenic 35.0%
! TAGAAGCTATCTTTTTCCTG+AGG - chr7_3:85710115-85710134 None:intergenic 35.0%
ATCTCTATAAGATTGAGCCA+TGG + chr7_3:85710168-85710187 Msa1132870:CDS 35.0%
TCTCTATAAGATTGAGCCAT+GGG + chr7_3:85710169-85710188 Msa1132870:CDS 35.0%
AGGTACTTAATTACTCCTTC+CGG + chr7_3:85710199-85710218 Msa1132870:intron 35.0%
GAAGTGATGAACAAACTGAA+TGG + chr7_3:85710442-85710461 Msa1132870:CDS 35.0%
ACAAATAGAGCTACAAAAGC+AGG + chr7_3:85710510-85710529 Msa1132870:CDS 35.0%
!! TATAAAGGAAGAGCACCTAA+TGG + chr7_3:85710615-85710634 Msa1132870:CDS 35.0%
CAATCAGATTTCTGACCATT+AGG - chr7_3:85710633-85710652 None:intergenic 35.0%
CTAATGGTCAGAAATCTGAT+TGG + chr7_3:85710631-85710650 Msa1132870:CDS 35.0%
AACGAATAGCTACAACAATG+AGG + chr7_3:85710889-85710908 Msa1132870:CDS 35.0%
AGCTACAACAATGAGGAAAA+TGG + chr7_3:85710896-85710915 Msa1132870:CDS 35.0%
ACTTGATCATCATACCAACA+TGG - chr7_3:85710930-85710949 None:intergenic 35.0%
!! TTTCTAGTTGTGGAAGTTGT+AGG - chr7_3:85711112-85711131 None:intergenic 35.0%
!!! GAATTGAGGTTTTCTAGTTG+TGG - chr7_3:85711122-85711141 None:intergenic 35.0%
! GATGATAATGAGCATTGCAA+AGG - chr7_3:85711146-85711165 None:intergenic 35.0%
AGTATGCAAATGCTTTATGG+TGG + chr7_3:85711203-85711222 Msa1132870:CDS 35.0%
CAATGATTTACAAGCAGTAG+TGG + chr7_3:85711229-85711248 Msa1132870:CDS 35.0%
TCAAGATCAAGATGCTTCTA+AGG + chr7_3:85711304-85711323 Msa1132870:CDS 35.0%
CAAGATCAAGATGCTTCTAA+GGG + chr7_3:85711305-85711324 Msa1132870:CDS 35.0%
TCCAAAGAATCAGAAATTGG+TGG + chr7_3:85711383-85711402 Msa1132870:CDS 35.0%
! TATCAGTTGCAGGGTATTAA+TGG - chr7_3:85711646-85711665 None:intergenic 35.0%
GCAACTTAAATATCAGTTGC+AGG - chr7_3:85711656-85711675 None:intergenic 35.0%
TCTTTACGGAGAGCAAATCA+AGG + chr7_3:85707502-85707521 Msa1132870:five_prime_UTR 40.0%
TCTAATCTGTGTGTTTCGGT+TGG + chr7_3:85708295-85708314 Msa1132870:intron 40.0%
CTTGTAGCACACAAAAGAGA+AGG - chr7_3:85708683-85708702 None:intergenic 40.0%
GAGAGAGACAGCAATAGTAA+AGG - chr7_3:85708790-85708809 None:intergenic 40.0%
CATGCTTTCTTGGATTGTCT+TGG + chr7_3:85709752-85709771 Msa1132870:intron 40.0%
! GTGCCTGTGTTATTCTGAAA+TGG + chr7_3:85709935-85709954 Msa1132870:intron 40.0%
TCAACAAGTTCTTCATCGGT+CGG - chr7_3:85710086-85710105 None:intergenic 40.0%
!! AACTTGTTGATCACTACCTC+AGG + chr7_3:85710096-85710115 Msa1132870:CDS 40.0%
TAAGTACCTTGTAGATCCCA+TGG - chr7_3:85710188-85710207 None:intergenic 40.0%
TGAAAATGGAACTACTCCTC+AGG + chr7_3:85710683-85710702 Msa1132870:CDS 40.0%
AAATGGACGATTCACCATGT+TGG + chr7_3:85710913-85710932 Msa1132870:CDS 40.0%
ATGAGAAGAAACTCTGCTTG+GGG - chr7_3:85710979-85710998 None:intergenic 40.0%
GATGAGAAGAAACTCTGCTT+GGG - chr7_3:85710980-85710999 None:intergenic 40.0%
TGATGAGAAGAAACTCTGCT+TGG - chr7_3:85710981-85711000 None:intergenic 40.0%
! GGTAGTGTTGTTGTTGATGT+TGG - chr7_3:85711022-85711041 None:intergenic 40.0%
AGCATTGCAAAGGAGAATTG+AGG - chr7_3:85711136-85711155 None:intergenic 40.0%
GCATTTGCATACTTTGTTGC+TGG - chr7_3:85711196-85711215 None:intergenic 40.0%
TAGTGGAGCAATCAAACGAA+TGG + chr7_3:85711246-85711265 Msa1132870:CDS 40.0%
GCCACCAATTTCTGATTCTT+TGG - chr7_3:85711387-85711406 None:intergenic 40.0%
GTCAATCTGACAATTGGAGT+TGG - chr7_3:85711432-85711451 None:intergenic 40.0%
! AGTTGCAGGGTATTAATGGT+CGG - chr7_3:85711642-85711661 None:intergenic 40.0%
CGGAGAGCAAATCAAGGTTA+AGG + chr7_3:85707508-85707527 Msa1132870:five_prime_UTR 45.0%
ATTGGCACGTGTGAAGTCAT+TGG - chr7_3:85707793-85707812 None:intergenic 45.0%
! TGTTTTATCTGCATGCGACG+TGG + chr7_3:85708456-85708475 Msa1132870:intron 45.0%
!! GTTCTGGTTTACGAGTGCTA+AGG - chr7_3:85708537-85708556 None:intergenic 45.0%
TCAAACCTGCGTGCATTTGA+CGG - chr7_3:85709995-85710014 None:intergenic 45.0%
AATTTCTCACACGTTCCTCC+TGG + chr7_3:85710047-85710066 Msa1132870:CDS 45.0%
ATTGAGCCATGGGATCTACA+AGG + chr7_3:85710179-85710198 Msa1132870:CDS 45.0%
CTATTTGTACGACTGCTCGT+TGG - chr7_3:85710498-85710517 None:intergenic 45.0%
GAGCTACAAAAGCAGGATTC+TGG + chr7_3:85710517-85710536 Msa1132870:CDS 45.0%
ACAACACTACCCTTGCAAAC+AGG + chr7_3:85711031-85711050 Msa1132870:CDS 45.0%
GATCCAACTCCTGTTTGCAA+GGG - chr7_3:85711043-85711062 None:intergenic 45.0%
TGATCCAACTCCTGTTTGCA+AGG - chr7_3:85711044-85711063 None:intergenic 45.0%
! AGAATCAGAAATTGGTGGCC+AGG + chr7_3:85711388-85711407 Msa1132870:CDS 45.0%
AGATTGAAGTCACGTGTTCC+TGG - chr7_3:85711409-85711428 None:intergenic 45.0%
CCACGTGTCAATCTGACAAT+TGG - chr7_3:85711438-85711457 None:intergenic 45.0%
CCAATTGTCAGATTGACACG+TGG + chr7_3:85711435-85711454 Msa1132870:CDS 45.0%
!! TAATATCAATTAAATTTAAA+AGG - chr7_3:85707551-85707570 None:intergenic 5.0%
!! TATTTATATAATTAGTTAAA+AGG + chr7_3:85707925-85707944 Msa1132870:intron 5.0%
!! ATTTATATAATTAGTTAAAA+GGG + chr7_3:85707926-85707945 Msa1132870:intron 5.0%
!! AATAAATTAATATATAATCT+TGG - chr7_3:85710352-85710371 None:intergenic 5.0%
TGTGGTTGGGACAATAGGGA+CGG - chr7_3:85708427-85708446 None:intergenic 50.0%
! TTTTCCCGTCAAATGCACGC+AGG + chr7_3:85709987-85710006 Msa1132870:intron 50.0%
CAAACCTGCGTGCATTTGAC+GGG - chr7_3:85709994-85710013 None:intergenic 50.0%
GGATGGAAACGAAATCCAGG+AGG - chr7_3:85710065-85710084 None:intergenic 50.0%
GTCGGATGGAAACGAAATCC+AGG - chr7_3:85710068-85710087 None:intergenic 50.0%
CAAGTTCTTCATCGGTCGGA+TGG - chr7_3:85710082-85710101 None:intergenic 50.0%
! GCAGGATTCTGGAAAGCTAC+AGG + chr7_3:85710528-85710547 Msa1132870:CDS 50.0%
CTACCCTTGCAAACAGGAGT+TGG + chr7_3:85711037-85711056 Msa1132870:CDS 50.0%
! GTCGGTTTCTCTTGCACAAG+AGG - chr7_3:85711624-85711643 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85707199 85711809 85707199 ID=Msa1132870;Name=Msa1132870
chr7_3 mRNA 85707199 85711809 85707199 ID=Msa1132870-mRNA-1;Parent=Msa1132870;Name=Msa1132870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=363|1|1|1|0.66|0.5|4|346|348
chr7_3 exon 85707199 85707529 85707199 ID=Msa1132870-mRNA-1:exon:25735;Parent=Msa1132870-mRNA-1
chr7_3 exon 85710009 85710200 85710009 ID=Msa1132870-mRNA-1:exon:25736;Parent=Msa1132870-mRNA-1
chr7_3 exon 85710427 85710704 85710427 ID=Msa1132870-mRNA-1:exon:25737;Parent=Msa1132870-mRNA-1
chr7_3 exon 85710855 85711809 85710855 ID=Msa1132870-mRNA-1:exon:25738;Parent=Msa1132870-mRNA-1
chr7_3 five_prime_UTR 85707199 85707529 85707199 ID=Msa1132870-mRNA-1:five_prime_utr;Parent=Msa1132870-mRNA-1
chr7_3 five_prime_UTR 85710009 85710040 85710009 ID=Msa1132870-mRNA-1:five_prime_utr;Parent=Msa1132870-mRNA-1
chr7_3 CDS 85710041 85710200 85710041 ID=Msa1132870-mRNA-1:cds;Parent=Msa1132870-mRNA-1
chr7_3 CDS 85710427 85710704 85710427 ID=Msa1132870-mRNA-1:cds;Parent=Msa1132870-mRNA-1
chr7_3 CDS 85710855 85711463 85710855 ID=Msa1132870-mRNA-1:cds;Parent=Msa1132870-mRNA-1
chr7_3 three_prime_UTR 85711464 85711809 85711464 ID=Msa1132870-mRNA-1:three_prime_utr;Parent=Msa1132870-mRNA-1
Gene Sequence

>Msa1132870

ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCGACCGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGATCTCTATAAGATTGAGCCATGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTCAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCAAACCATATTTGTCTCATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATACATGCAATCAGATCTTGAATCCCCAAGCAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAACACTACCCTTGCAAACAGGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGGCTAAGTCAAGATCAAGATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAGAATCAGAAATTGGTGGCCAGGAACACGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA
Protein sequence

>Msa1132870

MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSYMQSDLESPSRVSSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDASKGTSSYCNVAQQIALLSNDESKESEIGGQEHVTSISNSNCQIDTWK*