AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580800 MtrunA17_Chr4g0060381 96.404 584 21 0 1 584 1 584 0.0 1158
Msa0580800 MtrunA17_Chr5g0416161 40.081 247 125 6 93 335 112 339 3.82e-41 159
Msa0580800 MtrunA17_Chr5g0416161 50.000 112 54 1 475 584 614 725 2.65e-18 89.0
Msa0580800 MtrunA17_Chr7g0273951 44.000 100 49 2 99 198 105 197 1.19e-17 85.1
Msa0580800 MtrunA17_Chr1g0204901 60.000 65 26 0 100 164 136 200 2.46e-17 84.7
Msa0580800 MtrunA17_Chr8g0346021 61.905 63 24 0 102 164 129 191 3.57e-17 84.7
Msa0580800 MtrunA17_Chr8g0389781 60.000 60 24 0 102 161 128 187 2.58e-16 81.6
Msa0580800 MtrunA17_Chr1g0156121 37.143 140 82 3 100 237 124 259 4.28e-16 82.0
Msa0580800 MtrunA17_Chr6g0472551 53.731 67 31 0 101 167 118 184 4.87e-16 80.9
Msa0580800 MtrunA17_Chr7g0273861 52.941 85 33 4 96 175 120 202 7.05e-16 80.1
Msa0580800 MtrunA17_Chr8g0340761 55.385 65 29 0 102 166 128 192 7.88e-16 80.1
Msa0580800 MtrunA17_Chr4g0025441 38.462 156 75 6 5 151 4 147 2.52e-15 78.6
Msa0580800 MtrunA17_Chr1g0200161 33.721 172 82 6 100 243 141 308 3.01e-15 78.6
Msa0580800 MtrunA17_Chr4g0020671 37.615 109 63 1 55 158 51 159 8.39e-15 77.0
Msa0580800 MtrunA17_Chr3g0126901 61.111 54 21 0 98 151 110 163 1.09e-14 76.6
Msa0580800 MtrunA17_Chr1g0203711 55.738 61 27 0 100 160 115 175 1.15e-14 76.6
Msa0580800 MtrunA17_Chr2g0330921 53.846 65 30 0 102 166 99 163 2.00e-14 75.1
Msa0580800 MtrunA17_Chr6g0462191 37.640 178 86 6 91 244 98 274 2.05e-14 75.5
Msa0580800 MtrunA17_Chr8g0371131 56.667 60 26 0 102 161 73 132 2.23e-14 70.5
Msa0580800 MtrunA17_Chr1g0146931 62.963 54 20 0 98 151 120 173 2.73e-14 75.5
Msa0580800 MtrunA17_Chr1g0166431 60.377 53 21 0 100 152 117 169 8.97e-14 73.6
Msa0580800 MtrunA17_Chr4g0045641 46.032 63 34 0 102 164 148 210 1.21e-12 70.5
Msa0580800 MtrunA17_Chr1g0181581 49.231 65 33 0 100 164 116 180 1.67e-12 69.7
Msa0580800 MtrunA17_Chr2g0283321 27.513 189 110 5 102 266 65 250 7.38e-12 66.6
Msa0580800 MtrunA17_Chr3g0135851 31.522 184 92 6 91 243 82 262 1.37e-11 67.0
Msa0580800 MtrunA17_Chr4g0057321 49.180 61 31 0 96 156 84 144 1.62e-11 66.6
Msa0580800 MtrunA17_Chr7g0215371 50.000 58 29 0 100 157 19 76 4.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580800 AT1G74690.1 45.381 617 274 18 1 584 1 587 2.76e-130 394
Msa0580800 AT1G18840.1 42.459 610 287 22 1 584 1 572 1.79e-120 368
Msa0580800 AT1G18840.3 42.459 610 287 22 1 584 1 572 1.79e-120 368
Msa0580800 AT1G18840.2 42.459 610 287 22 1 584 1 572 1.79e-120 368
Msa0580800 AT1G14380.7 34.110 601 352 16 1 584 1 574 2.05e-83 272
Msa0580800 AT1G14380.6 33.704 629 345 18 1 584 1 602 1.07e-81 268
Msa0580800 AT1G14380.5 33.704 629 345 18 1 584 1 602 1.07e-81 268
Msa0580800 AT1G14380.2 33.704 629 345 18 1 584 1 602 1.07e-81 268
Msa0580800 AT2G02790.2 34.887 622 342 17 1 584 1 597 2.68e-73 246
Msa0580800 AT2G02790.3 34.887 622 342 17 1 584 1 597 2.68e-73 246
Msa0580800 AT2G02790.1 34.691 614 338 17 1 576 1 589 1.14e-69 237
Msa0580800 AT1G14380.1 31.378 682 352 23 1 584 1 664 2.16e-65 226
Msa0580800 AT1G14380.3 31.378 682 352 23 1 584 1 664 2.16e-65 226
Msa0580800 AT1G14380.4 31.378 682 352 23 1 584 1 664 2.16e-65 226
Msa0580800 AT1G19870.1 28.779 344 184 14 37 341 145 466 7.11e-20 94.4
Msa0580800 AT1G19870.2 28.409 264 141 9 107 341 39 283 8.99e-19 90.5
Msa0580800 AT4G14750.1 37.430 179 87 7 1 164 1 169 1.80e-18 88.2
Msa0580800 AT4G14750.3 37.430 179 87 7 1 164 60 228 3.75e-18 87.8
Msa0580800 AT4G14750.2 37.430 179 87 7 1 164 60 228 4.73e-18 87.4
Msa0580800 AT2G26180.1 32.234 273 137 8 1 243 1 255 9.62e-18 86.3
Msa0580800 AT1G72670.1 34.595 185 92 5 1 174 1 167 5.04e-17 84.0
Msa0580800 AT3G51380.1 55.882 68 30 0 94 161 31 98 2.87e-16 75.1
Msa0580800 AT1G17480.1 52.113 71 34 0 91 161 85 155 3.12e-16 81.3
Msa0580800 AT3G16490.1 44.211 95 47 2 102 193 109 200 4.22e-16 80.9
Msa0580800 AT5G13460.1 60.000 60 24 0 102 161 113 172 4.30e-16 81.3
Msa0580800 AT1G01110.2 57.353 68 29 0 102 169 123 190 5.01e-16 81.6
Msa0580800 AT4G00820.1 55.714 70 31 0 100 169 132 201 8.82e-16 80.9
Msa0580800 AT3G22190.3 51.389 72 30 1 80 151 73 139 1.35e-15 79.7
Msa0580800 AT3G22190.2 51.389 72 30 1 80 151 73 139 1.35e-15 79.7
Msa0580800 AT3G22190.4 51.389 72 30 1 80 151 73 139 1.35e-15 79.7
Msa0580800 AT3G22190.1 51.389 72 30 1 80 151 73 139 1.35e-15 79.7
Msa0580800 AT3G49260.1 52.308 65 31 0 100 164 120 184 3.19e-15 79.0
Msa0580800 AT3G49260.4 52.308 65 31 0 100 164 120 184 3.19e-15 79.0
Msa0580800 AT3G49260.2 52.308 65 31 0 100 164 120 184 3.19e-15 79.0
Msa0580800 AT3G49260.3 52.308 65 31 0 100 164 120 184 3.23e-15 79.0
Msa0580800 AT5G03040.1 31.053 190 100 6 1 167 1 182 5.71e-15 78.2
Msa0580800 AT5G03040.3 31.053 190 100 6 1 167 1 182 5.71e-15 78.2
Msa0580800 AT5G03040.2 31.053 190 100 6 1 167 1 182 5.71e-15 78.2
Msa0580800 AT3G52290.1 30.857 175 86 3 94 241 102 268 6.52e-15 77.8
Msa0580800 AT4G29150.1 50.000 74 37 0 88 161 119 192 1.44e-14 76.3
Msa0580800 AT4G10640.1 42.991 107 59 1 49 155 51 155 1.62e-14 76.3
Msa0580800 AT5G07240.1 56.667 60 26 0 101 160 107 166 3.07e-14 75.5
Msa0580800 AT5G07240.2 56.667 60 26 0 101 160 153 212 4.04e-14 75.5
Msa0580800 AT3G59690.2 46.479 71 38 0 93 163 162 232 4.19e-14 75.5
Msa0580800 AT3G59690.1 46.479 71 38 0 93 163 162 232 4.19e-14 75.5
Msa0580800 AT2G43680.4 46.032 63 34 0 102 164 324 386 6.01e-14 75.5
Msa0580800 AT2G43680.2 46.032 63 34 0 102 164 324 386 6.01e-14 75.5
Msa0580800 AT2G43680.3 46.032 63 34 0 102 164 324 386 6.01e-14 75.5
Msa0580800 AT2G43680.5 46.032 63 34 0 102 164 324 386 6.01e-14 75.5
Msa0580800 AT2G43680.1 46.032 63 34 0 102 164 325 387 6.12e-14 75.5
Msa0580800 AT1G51960.1 50.769 65 32 0 102 166 102 166 4.97e-13 71.2
Msa0580800 AT5G62070.1 60.377 53 21 0 102 154 119 171 5.64e-13 71.6
Msa0580800 AT4G23060.1 51.613 62 30 0 99 160 166 227 6.91e-13 71.6
Msa0580800 AT3G09710.1 27.536 276 154 9 6 243 5 272 5.32e-12 68.6
Msa0580800 AT3G49380.1 41.758 91 50 1 70 157 77 167 1.30e-11 67.0
Msa0580800 AT3G09710.2 31.868 182 93 7 6 167 5 175 1.62e-11 67.4

Find 162 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTAACATTGCTTCCTTTC+TGG 0.099782 4_1:+86063167 None:intergenic
AACAGTCTCTTCTAAATCTT+TGG 0.164446 4_1:+86062984 None:intergenic
AAACAAACAGGACATAAATT+TGG 0.176777 4_1:+86061916 None:intergenic
TGCTTCATCAACTACAATTA+TGG 0.198086 4_1:-86063673 Msa0580800:CDS
GGCTGCTTTCAGGGGTTATT+TGG 0.216492 4_1:-86066694 Msa0580800:intron
TCCTCTTGGTATATTTGATT+TGG 0.230375 4_1:+86067443 None:intergenic
GAGCCTTAAAAGGCATAATA+AGG 0.247639 4_1:-86065964 Msa0580800:CDS
ATTTCAGGGTTTGCTTGTGC+TGG 0.273773 4_1:+86063432 None:intergenic
GACCAACTAAGGACTGAATT+TGG 0.278720 4_1:+86063621 None:intergenic
GAGAGTGATTTGTACATTAT+AGG 0.281368 4_1:-86061967 Msa0580800:three_prime_UTR
CTTCCATCTTGTACGACTTT+TGG 0.286258 4_1:+86062754 None:intergenic
TGTTTATGTGTTATCTTTGA+TGG 0.296486 4_1:-86062057 Msa0580800:three_prime_UTR
GCTTCCAAGGTTTCGGAAAC+TGG 0.304932 4_1:-86066900 Msa0580800:CDS
GCTGGTCAGCATGTCGGTTT+TGG 0.307481 4_1:-86063593 Msa0580800:CDS
TTCCTTTCTGGCCATTTCAT+TGG 0.314625 4_1:+86063179 None:intergenic
AGTTTATCTTCGCTGCATTT+TGG 0.322117 4_1:-86061995 Msa0580800:three_prime_UTR
TCCTCCAGCTTCATCTTCTC+TGG 0.324193 4_1:+86066735 None:intergenic
TCTCTCACTGTCTTCTTCTA+TGG 0.327287 4_1:-86068913 Msa0580800:intron
GTCAAGCCAATTGCTATATC+TGG 0.328979 4_1:-86064884 Msa0580800:CDS
AATTTCCTTGCGTTTCGTTT+TGG 0.330220 4_1:+86063402 None:intergenic
AGAGCATTTAGAGCCTTAAA+AGG 0.332450 4_1:-86065974 Msa0580800:CDS
CATGTTACCATAAAATATTT+AGG 0.336581 4_1:+86061780 None:intergenic
TGAGATTCCAAAGCCTCATT+TGG 0.338407 4_1:-86063256 Msa0580800:CDS
TGACACTCCAAACAGTTATC+AGG 0.339226 4_1:-86063085 Msa0580800:CDS
AGTTGTTGCTTCCAAGGTTT+CGG 0.342846 4_1:-86066907 Msa0580800:CDS
TGGATCAAAACTGTACTGTT+TGG 0.347377 4_1:-86067477 Msa0580800:CDS
GGTTTGCTTGTGCTGGGGCT+AGG 0.348635 4_1:+86063439 None:intergenic
TGGGTAAATCACCAGGAAAA+TGG 0.351546 4_1:-86067497 Msa0580800:CDS
TTTCAGGGTTTGCTTGTGCT+GGG 0.354870 4_1:+86063433 None:intergenic
GTTAAGATCATACACACTTC+AGG 0.363140 4_1:+86061851 None:intergenic
GAAAAGCTGAGATAATTTCT+TGG 0.368062 4_1:+86069027 None:intergenic
TCCGACGATACCAAGTTATA+TGG 0.373995 4_1:-86062821 Msa0580800:CDS
AAAAGCTGAGATAATTTCTT+GGG 0.387630 4_1:+86069028 None:intergenic
GGAACTGCAGCTTCAACAAC+TGG 0.388236 4_1:+86063294 None:intergenic
TCCTAGAGATTTAGTTACTA+AGG 0.389207 4_1:-86063115 Msa0580800:CDS
TTCCCCAACCCAAGAAAATC+CGG 0.393030 4_1:-86063563 Msa0580800:CDS
AACTGTACTGTTTGGGAAGA+AGG 0.396388 4_1:-86067469 Msa0580800:CDS
GCTACTTTGTGCTGTATGTA+TGG 0.397544 4_1:-86065896 Msa0580800:CDS
ACAGTCTCTTCTAAATCTTT+GGG 0.399625 4_1:+86062985 None:intergenic
AACAAACAGGACATAAATTT+GGG 0.400409 4_1:+86061917 None:intergenic
GGATCAAAACTGTACTGTTT+GGG 0.400627 4_1:-86067476 Msa0580800:CDS
AGCAATTGGCTTGACAGGTT+TGG 0.401611 4_1:+86064892 None:intergenic
GATATAGCAATTGGCTTGAC+AGG 0.403504 4_1:+86064887 None:intergenic
TGCTGTTAGTTGAAGATGGC+AGG 0.407732 4_1:+86062701 None:intergenic
CTTCTTTATTCTCCAGCTCC+AGG 0.410650 4_1:+86066829 None:intergenic
CAGTTCATTCAGGTGGTAAA+GGG 0.410844 4_1:-86062645 Msa0580800:CDS
AGTGGTGCATCTTGATCAAC+AGG 0.413486 4_1:+86066762 None:intergenic
ACATTCACCTGATAACTGTT+TGG 0.414315 4_1:+86063078 None:intergenic
ACACAGAGACCAGTTCATTC+AGG 0.415046 4_1:-86062655 Msa0580800:CDS
AAGCAGGGTAATATTTCAAC+TGG 0.419215 4_1:-86063522 Msa0580800:CDS
CCAACCCTCAGATCCTTTGC+TGG 0.428090 4_1:-86063373 Msa0580800:CDS
CCAGTTCATTCAGGTGGTAA+AGG 0.435174 4_1:-86062646 Msa0580800:CDS
CTCTCTGTCACTGTGCTAGC+TGG 0.436068 4_1:+86068984 None:intergenic
AGATTTACCTCTCTTCCTCT+TGG 0.436650 4_1:+86067429 None:intergenic
TGCTGAATTGACCGAACTAT+AGG 0.441506 4_1:-86062030 Msa0580800:three_prime_UTR
CTGCGTTTGCAATATGTTTG+TGG 0.443685 4_1:-86063648 Msa0580800:CDS
TTAGAAGCTTGTTAATCAAA+AGG 0.445914 4_1:-86066934 Msa0580800:intron
GGTCATTAGTTCCAATGAAA+TGG 0.449558 4_1:-86063190 Msa0580800:CDS
TCCAAAGCCTCATTTGGAAA+AGG 0.453121 4_1:-86063250 Msa0580800:CDS
TTAAGGCTCTAAATGCTCTC+CGG 0.456342 4_1:+86065978 None:intergenic
GGAAGGAGTTGTTGCTTCCA+AGG 0.457830 4_1:-86066913 Msa0580800:CDS
GTGTCAATTTCTTGATCTCC+AGG 0.458269 4_1:+86066792 None:intergenic
TCCTTAGTTGGTCTGAGCGC+TGG 0.459646 4_1:-86063611 Msa0580800:CDS
ATCCAAATTCAGTCCTTAGT+TGG 0.459833 4_1:-86063623 Msa0580800:CDS
TGTAATGTAGGTTACCTTAC+GGG 0.461722 4_1:+86064829 None:intergenic
ATCTTAACACGTACCTTCCT+AGG 0.464233 4_1:-86061836 Msa0580800:three_prime_UTR
AATAATGCTCGAAAACAAAC+AGG 0.471096 4_1:+86061904 None:intergenic
ATAATTAGAAAGTCTGATGT+TGG 0.475015 4_1:-86065839 Msa0580800:CDS
AGAATGGAAGAGGTGATTTG+AGG 0.478240 4_1:-86062124 Msa0580800:exon
ACCAGCGCTCAGACCAACTA+AGG 0.486273 4_1:+86063610 None:intergenic
AACCTCAACTGGAGCTAAGC+AGG 0.486487 4_1:-86062872 Msa0580800:CDS
CCTGTGGGTACGTTTAGACT+TGG 0.491203 4_1:+86063485 None:intergenic
CCTTTACCACCTGAATGAAC+TGG 0.492578 4_1:+86062646 None:intergenic
CTAGGAGTAATTCCCATCTC+TGG 0.493836 4_1:+86063138 None:intergenic
TCAGTTGCTGCCATATAACT+TGG 0.495488 4_1:+86062811 None:intergenic
TTCCAATGAAATGGCCAGAA+AGG 0.500345 4_1:-86063181 Msa0580800:CDS
CAATTTCTTCATGTCAACTC+CGG 0.501578 4_1:+86062090 None:intergenic
ACAGATCTTGGTATCACAAT+GGG 0.501778 4_1:-86067516 Msa0580800:intron
AATTCCCATCTCTGGCTCAC+TGG 0.502421 4_1:+86063146 None:intergenic
ATCTGCCAAGGCAAAATTGA+GGG 0.504867 4_1:-86062788 Msa0580800:CDS
GAAAATTCTCACTTAACAAA+CGG 0.505003 4_1:-86062952 Msa0580800:CDS
AGCACTTATTCGTGGGCACT+TGG 0.506188 4_1:-86065936 Msa0580800:CDS
AAATTACAAGCACTTGTTCG+TGG 0.506547 4_1:-86065866 Msa0580800:CDS
AAGCAGGAACGTGCAGAGAA+TGG 0.508732 4_1:-86062856 Msa0580800:CDS
TGAACTGGTCTCTGTGTCCT+AGG 0.511569 4_1:+86062661 None:intergenic
GCCATATAACTTGGTATCGT+CGG 0.514618 4_1:+86062820 None:intergenic
AATCACAAGGAAGATCAAAC+AGG 0.515319 4_1:-86062922 Msa0580800:CDS
CTCCAGGTCTTCCACATGTA+CGG 0.516788 4_1:+86066845 None:intergenic
GAAAGGTAGTTCAAGCAGAA+TGG 0.521415 4_1:-86062140 Msa0580800:CDS
TAAGGCTCTAAATGCTCTCC+GGG 0.522087 4_1:+86065979 None:intergenic
GATCAAACACACCTATAGTT+CGG 0.526581 4_1:+86062019 None:intergenic
TCTTCTTCTAGAGATGGAAA+TGG 0.527477 4_1:-86062598 Msa0580800:intron
TTCATCTTCTCTGGATCAAG+TGG 0.527575 4_1:+86066744 None:intergenic
TTACTTGTAATATCTGTCAA+AGG 0.531696 4_1:+86063045 None:intergenic
TAGTTCAAGCAGAATGGAAG+AGG 0.532628 4_1:-86062134 Msa0580800:CDS
TGCCGTACATGTGGAAGACC+TGG 0.534296 4_1:-86066847 Msa0580800:CDS
CCAGCAAAGGATCTGAGGGT+TGG 0.534674 4_1:+86063373 None:intergenic
CACAAACATATTGCAAACGC+AGG 0.535386 4_1:+86063649 None:intergenic
TTCAGGGTTTGCTTGTGCTG+GGG 0.535737 4_1:+86063434 None:intergenic
GCAGTATCTTCTTCTAGAGA+TGG 0.536198 4_1:-86062604 Msa0580800:CDS
TTAAGATCATACACACTTCA+GGG 0.537575 4_1:+86061852 None:intergenic
AAGCTTGTTAATCAAAAGGA+AGG 0.541536 4_1:-86066930 Msa0580800:CDS
GTGCAATCTATTGAAGCTCC+AGG 0.542766 4_1:-86065798 Msa0580800:intron
ATGTACGGCAATAGTGTTGG+AGG 0.543874 4_1:+86066860 None:intergenic
GTTAACCAGTGAGCCAGAGA+TGG 0.546318 4_1:-86063151 Msa0580800:CDS
AGTGTTGGTGTTTCAGAACA+AGG 0.547511 4_1:-86063213 Msa0580800:CDS
AAAGGATCTGAGGGTTGGCT+AGG 0.547702 4_1:+86063378 None:intergenic
ATCTCAGATTCAACTTCTGA+CGG 0.550258 4_1:+86063273 None:intergenic
TAAACCAGTTTCCGAAACCT+TGG 0.551513 4_1:+86066896 None:intergenic
TGATCCAGAGAAGATGAAGC+TGG 0.553280 4_1:-86066739 Msa0580800:CDS
AATCTGCCAAGGCAAAATTG+AGG 0.553435 4_1:-86062789 Msa0580800:CDS
CACATGTACGGCAATAGTGT+TGG 0.554159 4_1:+86066857 None:intergenic
AGGTTACAAGCACTTATTCG+TGG 0.554181 4_1:-86065944 Msa0580800:CDS
ACCTTCTCAAGCTCAATCTG+TGG 0.557585 4_1:+86063345 None:intergenic
TTCCTGCTTAGCTCCAGTTG+AGG 0.558184 4_1:+86062870 None:intergenic
CTGAGCGCTGGTCAGCATGT+CGG 0.559916 4_1:-86063599 Msa0580800:CDS
AAGGCAAAATTGAGGGCTCA+AGG 0.562761 4_1:-86062781 Msa0580800:CDS
AGCAAACACTTTCACCCGTA+AGG 0.563747 4_1:-86064843 Msa0580800:intron
GTAACTAAATCTCTAGGACT+AGG 0.566188 4_1:+86063120 None:intergenic
TCACCAAAAGTCGTACAAGA+TGG 0.566333 4_1:-86062757 Msa0580800:CDS
GAAACAGTTGCCTCAAGTGT+TGG 0.566616 4_1:-86063228 Msa0580800:CDS
TTCTGAAACACCAACACTTG+AGG 0.567359 4_1:+86063218 None:intergenic
ACATGTGGAAGACCTGGAGC+TGG 0.572908 4_1:-86066841 Msa0580800:CDS
TTAACCAGTGAGCCAGAGAT+GGG 0.573847 4_1:-86063150 Msa0580800:CDS
TTGCAGTAGGAAGCTTCCTG+TGG 0.578038 4_1:+86063469 None:intergenic
GAACAACTTCCACATTGGTA+AGG 0.580152 4_1:-86068741 Msa0580800:intron
TCCACAGATTGAGCTTGAGA+AGG 0.582817 4_1:-86063346 Msa0580800:CDS
GTGTTGGTGTTTCAGAACAA+GGG 0.584151 4_1:-86063212 Msa0580800:CDS
TCCCCAACCCAAGAAAATCC+GGG 0.584450 4_1:-86063562 Msa0580800:CDS
ATCACAATGGGTAAATCACC+AGG 0.589006 4_1:-86067504 Msa0580800:exon
GCTGTTAGTTGAAGATGGCA+GGG 0.593744 4_1:+86062702 None:intergenic
AAAACACAGGCTGCTTTCAG+GGG 0.596222 4_1:-86066702 Msa0580800:CDS
GGTTAAACGTAACTTGCGAA+AGG 0.597673 4_1:-86063325 Msa0580800:CDS
AAACAGTTATCAGGTGAATG+TGG 0.598436 4_1:-86063076 Msa0580800:CDS
GGTTACAAGCACTTATTCGT+GGG 0.599006 4_1:-86065943 Msa0580800:CDS
GAGCTGAACAACTTCCACAT+TGG 0.601144 4_1:-86068746 Msa0580800:five_prime_UTR
AAATATACCAAGAGGAAGAG+AGG 0.602057 4_1:-86067436 Msa0580800:intron
TACAGATCTTGGTATCACAA+TGG 0.603086 4_1:-86067517 Msa0580800:intron
CAACACTATTGCCGTACATG+TGG 0.604171 4_1:-86066856 Msa0580800:CDS
TCCTTAGTAACTAAATCTCT+AGG 0.610351 4_1:+86063114 None:intergenic
TAGAGATTTAGTTACTAAGG+AGG 0.612038 4_1:-86063112 Msa0580800:CDS
TGTTGGTGTTTCAGAACAAG+GGG 0.614686 4_1:-86063211 Msa0580800:CDS
GCTAGGTCAAAATTTGCAGT+AGG 0.616714 4_1:+86063456 None:intergenic
ACGGCAATAGTGTTGGAGGT+TGG 0.617024 4_1:+86066864 None:intergenic
TGCAGTAGGAAGCTTCCTGT+GGG 0.618293 4_1:+86063470 None:intergenic
GGCAGCAACTGAATCTGCCA+AGG 0.626694 4_1:-86062800 Msa0580800:CDS
GATCAAGAAATTGACACAGT+GGG 0.629104 4_1:-86066786 Msa0580800:CDS
GTACTTTGTAACACCTAGGA+AGG 0.629818 4_1:+86061823 None:intergenic
TCCAAATCAAATATACCAAG+AGG 0.633885 4_1:-86067444 Msa0580800:CDS
AGTTCATTCAGGTGGTAAAG+GGG 0.634139 4_1:-86062644 Msa0580800:CDS
ACAAACATATTGCAAACGCA+GGG 0.640060 4_1:+86063650 None:intergenic
AAATCAGTTCGCATTCACCT+AGG 0.645810 4_1:-86062678 Msa0580800:CDS
TAACAATTACCTTACCAATG+TGG 0.653378 4_1:+86068732 None:intergenic
GTTCATTCAGGTGGTAAAGG+GGG 0.659196 4_1:-86062643 Msa0580800:CDS
CCAAGTCTAAACGTACCCAC+AGG 0.666876 4_1:-86063485 Msa0580800:CDS
GAACTGCAGCTTCAACAACT+GGG 0.667414 4_1:+86063295 None:intergenic
AAACGGAGATTTGAATCACA+AGG 0.671822 4_1:-86062935 Msa0580800:CDS
CAGAGACCAGTTCATTCAGG+TGG 0.680292 4_1:-86062652 Msa0580800:CDS
TCCAGAGAAGATGAAGCTGG+AGG 0.681945 4_1:-86066736 Msa0580800:CDS
ATGTGTAAGTTAGTCACACG+TGG 0.688304 4_1:+86069058 None:intergenic
ATAAGTACTTTGTAACACCT+AGG 0.696236 4_1:+86061819 None:intergenic
AGATCAAGAAATTGACACAG+TGG 0.734130 4_1:-86066787 Msa0580800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAAAAAAAAAAAAA+GGG + chr4_1:86065243-86065262 None:intergenic 0.0%
!! TTATAATAAAAAAAAAAAAA+AGG + chr4_1:86065244-86065263 None:intergenic 0.0%
!! ATAAAAACATTTAATTAAGT+TGG + chr4_1:86062975-86062994 None:intergenic 10.0%
!! TTAAAAAGGAAATAATATGA+TGG - chr4_1:86062431-86062450 Msa0580800:intron 15.0%
!! GATCAAGTAATTATATTTAT+AGG + chr4_1:86062662-86062681 None:intergenic 15.0%
!!! TATAATATATGCATTTTTTG+AGG - chr4_1:86062748-86062767 Msa0580800:CDS 15.0%
!!! ATAATATATGCATTTTTTGA+GGG - chr4_1:86062749-86062768 Msa0580800:CDS 15.0%
!! GAAATAAAAATAATAATCCT+AGG - chr4_1:86063219-86063238 Msa0580800:CDS 15.0%
!! TTATTATCGAATTGAAATTA+AGG + chr4_1:86064378-86064397 None:intergenic 15.0%
!!! TCTTAATTTGAAATTGATTT+TGG - chr4_1:86064406-86064425 Msa0580800:intron 15.0%
!!! CTTAATTTGAAATTGATTTT+GGG - chr4_1:86064407-86064426 Msa0580800:intron 15.0%
!!! ATTTATTGGCATTATTTTTT+TGG - chr4_1:86064715-86064734 Msa0580800:intron 15.0%
!! ATCTTTAATAGAACAATTTA+CGG + chr4_1:86065414-86065433 None:intergenic 15.0%
!! TATTAAATACACAAAAGATA+CGG + chr4_1:86066174-86066193 None:intergenic 15.0%
!! ACAAATCTAAACAAATTACA+CGG + chr4_1:86062265-86062284 None:intergenic 20.0%
!!! TATTTCCTTTTTAACATGAT+TGG + chr4_1:86062425-86062444 None:intergenic 20.0%
!!! ATAATATGATGGTGTTTAAT+TGG - chr4_1:86062442-86062461 Msa0580800:intron 20.0%
!! TAAGATCAAAAGTAAGTATA+GGG + chr4_1:86062604-86062623 None:intergenic 20.0%
!!! ATACTTTTTTTCTTTTGACA+AGG - chr4_1:86062716-86062735 Msa0580800:CDS 20.0%
!! CGAATAAAATTTAAGAATTG+TGG + chr4_1:86063634-86063653 None:intergenic 20.0%
!! AAAATATAGTAAAAGACATC+AGG + chr4_1:86063836-86063855 None:intergenic 20.0%
!!! GAATTTTTAACTATAAACCA+TGG - chr4_1:86064190-86064209 Msa0580800:intron 20.0%
!! AGACAAACTATAAAAATGTA+GGG + chr4_1:86064347-86064366 None:intergenic 20.0%
!! AAGACAAACTATAAAAATGT+AGG + chr4_1:86064348-86064367 None:intergenic 20.0%
!! AATGCCAATAAATTAAAAAC+TGG + chr4_1:86064708-86064727 None:intergenic 20.0%
!! ATTATAATGTAGAGAGAAAA+TGG + chr4_1:86065036-86065055 None:intergenic 20.0%
!! ACATTATAATTTATTTGTCG+AGG - chr4_1:86065046-86065065 Msa0580800:intron 20.0%
!! CATTATAATTTATTTGTCGA+GGG - chr4_1:86065047-86065066 Msa0580800:intron 20.0%
!! ATTATAATTTATTTGTCGAG+GGG - chr4_1:86065048-86065067 Msa0580800:intron 20.0%
!! TCTTTAATAGAACAATTTAC+GGG + chr4_1:86065413-86065432 None:intergenic 20.0%
!!! AGATTTTTTTTTTCTTTCTG+AGG - chr4_1:86065660-86065679 Msa0580800:intron 20.0%
!!! GATTTTTTTTTTCTTTCTGA+GGG - chr4_1:86065661-86065680 Msa0580800:intron 20.0%
!! ACGAATAATATATAGATCTA+AGG + chr4_1:86066227-86066246 None:intergenic 20.0%
!! TTAGATCTATATATTATTCG+TGG - chr4_1:86066226-86066245 Msa0580800:intron 20.0%
!!! TTTTTCATCTCTTCATATAT+TGG - chr4_1:86066449-86066468 Msa0580800:intron 20.0%
!! AATAATTACGTGTATAATCT+TGG + chr4_1:86066564-86066583 None:intergenic 20.0%
!!! ATATTTTCAAAGCACTTTTT+TGG + chr4_1:86068255-86068274 None:intergenic 20.0%
!! ACTACATTCAAATAACAATA+CGG - chr4_1:86068443-86068462 Msa0580800:intron 20.0%
!!! TATTCTATCAAGTTGTTTTA+CGG + chr4_1:86068482-86068501 None:intergenic 20.0%
!!! ATTTCGACCTAAATATTTTA+TGG - chr4_1:86069006-86069025 Msa0580800:five_prime_UTR 20.0%
!! CATGTTACCATAAAATATTT+AGG + chr4_1:86069016-86069035 None:intergenic 20.0%
!!! GATTTCTTCATATTTGTTTT+AGG - chr4_1:86069051-86069070 Msa0580800:five_prime_UTR 20.0%
! AAAAGCTGAGATAATTTCTT+GGG + chr4_1:86061768-86061787 None:intergenic 25.0%
! GAAGAGAAATATATAAAGTG+AGG + chr4_1:86061944-86061963 None:intergenic 25.0%
! AAGTCTATAAGCTGATTATT+TGG - chr4_1:86061998-86062017 Msa0580800:three_prime_UTR 25.0%
! AATATAAATTATGCCTGTTC+TGG - chr4_1:86062557-86062576 Msa0580800:intron 25.0%
! CTAAGATCAAAAGTAAGTAT+AGG + chr4_1:86062605-86062624 None:intergenic 25.0%
! TGAGCTATGAAAATAATTTG+AGG + chr4_1:86062829-86062848 None:intergenic 25.0%
! AATTCTTAAATCATGCAACA+TGG + chr4_1:86063152-86063171 None:intergenic 25.0%
!! TAATTTTGCCTTAACTATCA+TGG + chr4_1:86063396-86063415 None:intergenic 25.0%
! CATTCAATAAATTATGCATG+TGG + chr4_1:86063439-86063458 None:intergenic 25.0%
! ATCCATTGAAGTTACATTAT+TGG - chr4_1:86063470-86063489 Msa0580800:CDS 25.0%
!!! CGTTTTGGTAAGAATTTAAA+GGG + chr4_1:86063535-86063554 None:intergenic 25.0%
! CCTTTAAATTCTTACCAAAA+CGG - chr4_1:86063533-86063552 Msa0580800:CDS 25.0%
! TCGTTAACTTCATTTACAAA+CGG - chr4_1:86063676-86063695 Msa0580800:CDS 25.0%
!!! TTATTGAAAAGTATCACTGT+TGG - chr4_1:86063755-86063774 Msa0580800:intron 25.0%
!!! TTAGAAGCTTGTTAATCAAA+AGG - chr4_1:86063859-86063878 Msa0580800:intron 25.0%
!! GTTTTATAGATATTTTCCGA+TGG - chr4_1:86064135-86064154 Msa0580800:intron 25.0%
!! TCATAATTTTGCAGACTAAA+AGG + chr4_1:86064172-86064191 None:intergenic 25.0%
! GACAAACTATAAAAATGTAG+GGG + chr4_1:86064346-86064365 None:intergenic 25.0%
! AAATATGTCGATGAAAGAAT+TGG - chr4_1:86064674-86064693 Msa0580800:intron 25.0%
!!! TGGACCAGTTTTTAATTTAT+TGG - chr4_1:86064701-86064720 Msa0580800:intron 25.0%
!!! TATTGGCATTATTTTTTTGG+TGG - chr4_1:86064718-86064737 Msa0580800:intron 25.0%
!! TAACCTTATTATGCCTTTTA+AGG + chr4_1:86064835-86064854 None:intergenic 25.0%
! ATAATTAGAAAGTCTGATGT+TGG - chr4_1:86064954-86064973 Msa0580800:intron 25.0%
!!! TTTAGCTCTAATTTCAGTTT+GGG + chr4_1:86065359-86065378 None:intergenic 25.0%
!!! ATTTAGCTCTAATTTCAGTT+TGG + chr4_1:86065360-86065379 None:intergenic 25.0%
! TTAAAGATCATAATTCTTGC+TGG - chr4_1:86065426-86065445 Msa0580800:intron 25.0%
! TAAAGATCATAATTCTTGCT+GGG - chr4_1:86065427-86065446 Msa0580800:intron 25.0%
!! ATTTGCTACAACTAGAATTA+TGG - chr4_1:86065559-86065578 Msa0580800:intron 25.0%
!! AAATTCTTATGAGTGTCTTT+TGG - chr4_1:86065733-86065752 Msa0580800:intron 25.0%
!! ATTTTACCAGATATAGCAAT+TGG + chr4_1:86065918-86065937 None:intergenic 25.0%
!! CTCTGTATTGATAATTGATA+TGG - chr4_1:86066292-86066311 Msa0580800:intron 25.0%
!! TGTATTGATAATTGATATGG+TGG - chr4_1:86066295-86066314 Msa0580800:intron 25.0%
! CACATTCCTATTATTTCAAA+CGG + chr4_1:86066377-86066396 None:intergenic 25.0%
!!! TGTCATGTCATATTTTAGTT+TGG - chr4_1:86066836-86066855 Msa0580800:CDS 25.0%
! AATCTAATTGATGTGAAAAC+CGG + chr4_1:86066878-86066897 None:intergenic 25.0%
!!! GTTTTGGTTTTTCAATTTCA+GGG + chr4_1:86067378-86067397 None:intergenic 25.0%
! TTACTTGTAATATCTGTCAA+AGG + chr4_1:86067751-86067770 None:intergenic 25.0%
!!! TTCGTTTTTAACTTCATCAT+CGG + chr4_1:86067788-86067807 None:intergenic 25.0%
! GAAAATTCTCACTTAACAAA+CGG - chr4_1:86067841-86067860 Msa0580800:intron 25.0%
!!! GTCATTTTTACGTGATATTA+TGG + chr4_1:86068301-86068320 None:intergenic 25.0%
! CAGTAATAATATCAACTTAG+TGG - chr4_1:86068325-86068344 Msa0580800:intron 25.0%
! TTTGTCATACTTATGAAACA+AGG + chr4_1:86068355-86068374 None:intergenic 25.0%
! ATACATATTGTTTAGAAAGG+AGG + chr4_1:86068383-86068402 None:intergenic 25.0%
! CTCATACATATTGTTTAGAA+AGG + chr4_1:86068386-86068405 None:intergenic 25.0%
! AAATCCATGTTTGTTTATTC+TGG - chr4_1:86068565-86068584 Msa0580800:intron 25.0%
! TGTTTATGTGTTATCTTTGA+TGG - chr4_1:86068736-86068755 Msa0580800:intron 25.0%
! AACAAACAGGACATAAATTT+GGG + chr4_1:86068879-86068898 None:intergenic 25.0%
! AAACAAACAGGACATAAATT+TGG + chr4_1:86068880-86068899 None:intergenic 25.0%
! AGGGAAAAAAACAAACAATA+TGG + chr4_1:86068925-86068944 None:intergenic 25.0%
GAAAAGCTGAGATAATTTCT+TGG + chr4_1:86061769-86061788 None:intergenic 30.0%
! CTAAAGCTGCATAAATTTTG+TGG + chr4_1:86061852-86061871 None:intergenic 30.0%
TAACAATTACCTTACCAATG+TGG + chr4_1:86062064-86062083 None:intergenic 30.0%
! CATGAATCAGTGTTTGAAAT+TGG + chr4_1:86062115-86062134 None:intergenic 30.0%
!! CAATTTCAAACACTGATTCA+TGG - chr4_1:86062113-86062132 Msa0580800:exon 30.0%
GTGTAAGCTACTATTATTGT+CGG - chr4_1:86062351-86062370 Msa0580800:intron 30.0%
! TAAGTTGAAGTTGAAGTTGT+AGG + chr4_1:86062926-86062945 None:intergenic 30.0%
! TTTTTGCACTCGTATTTTCA+TGG - chr4_1:86062948-86062967 Msa0580800:CDS 30.0%
CAAATTCAGTCAACTTAAGT+TGG + chr4_1:86063112-86063131 None:intergenic 30.0%
!! ACTTAAGTTGACTGAATTTG+CGG - chr4_1:86063112-86063131 Msa0580800:CDS 30.0%
CAAGATCTGTAACAGAAAAA+AGG + chr4_1:86063267-86063286 None:intergenic 30.0%
!!! CTTTTTTCTGTTACAGATCT+TGG - chr4_1:86063265-86063284 Msa0580800:CDS 30.0%
TCCAAATCAAATATACCAAG+AGG - chr4_1:86063349-86063368 Msa0580800:CDS 30.0%
TCCTCTTGGTATATTTGATT+TGG + chr4_1:86063353-86063372 None:intergenic 30.0%
TGTGGTTTAATAATGAACAG+AGG + chr4_1:86063421-86063440 None:intergenic 30.0%
TGTAACTTCAATGGATGTTT+AGG + chr4_1:86063466-86063485 None:intergenic 30.0%
CACCAATAATGTAACTTCAA+TGG + chr4_1:86063475-86063494 None:intergenic 30.0%
GTAAGAATTTAAAGGGTGAA+CGG + chr4_1:86063528-86063547 None:intergenic 30.0%
!! CCGTTTTGGTAAGAATTTAA+AGG + chr4_1:86063536-86063555 None:intergenic 30.0%
! TTCGATACTTTTACACTTCA+TGG - chr4_1:86063650-86063669 Msa0580800:CDS 30.0%
TGAGAGTAATTTGATATGAC+CGG - chr4_1:86063800-86063819 Msa0580800:intron 30.0%
!! AAGCTTGTTAATCAAAAGGA+AGG - chr4_1:86063863-86063882 Msa0580800:intron 30.0%
CACTTCAAAATATGTTTCCA+TGG + chr4_1:86064210-86064229 None:intergenic 30.0%
TCTCTATTTAGAGAACATGA+AGG + chr4_1:86064480-86064499 None:intergenic 30.0%
AGAGACATTTGCATTAGTTA+AGG + chr4_1:86064786-86064805 None:intergenic 30.0%
AATGCAAATGTCTCTATTGA+AGG - chr4_1:86064791-86064810 Msa0580800:intron 30.0%
TGGATTTGGAAATAATAACC+TGG + chr4_1:86065016-86065035 None:intergenic 30.0%
! ATGTAGAGAGAAAATGGATT+TGG + chr4_1:86065030-86065049 None:intergenic 30.0%
! AAATTCTTCTGATTAGTCCA+TGG - chr4_1:86065285-86065304 Msa0580800:intron 30.0%
! AATTCTTCTGATTAGTCCAT+GGG - chr4_1:86065286-86065305 Msa0580800:intron 30.0%
ATAGAACAATTTACGGGATA+AGG + chr4_1:86065407-86065426 None:intergenic 30.0%
!! TCCTTGCTGTTCAAATAAAT+GGG - chr4_1:86065523-86065542 Msa0580800:intron 30.0%
CTTATTGTTAAAGACAAGCA+TGG - chr4_1:86065686-86065705 Msa0580800:intron 30.0%
AACAAGTCAGTGATAAGAAA+GGG - chr4_1:86065797-86065816 Msa0580800:intron 30.0%
ACACATATATGGTGTAATGT+AGG + chr4_1:86065979-86065998 None:intergenic 30.0%
GCATAGTTATCACACATATA+TGG + chr4_1:86065990-86066009 None:intergenic 30.0%
! ATTGATAATTGATATGGTGG+AGG - chr4_1:86066298-86066317 Msa0580800:intron 30.0%
! TTGATAATTGATATGGTGGA+GGG - chr4_1:86066299-86066318 Msa0580800:intron 30.0%
GGAGAAATTATAGGAATGTA+GGG - chr4_1:86066320-86066339 Msa0580800:intron 30.0%
GAGAAATTATAGGAATGTAG+GGG - chr4_1:86066321-86066340 Msa0580800:intron 30.0%
AGAAATTATAGGAATGTAGG+GGG - chr4_1:86066322-86066341 Msa0580800:intron 30.0%
TTCCTATTATTTCAAACGGT+GGG + chr4_1:86066373-86066392 None:intergenic 30.0%
ATTCCTATTATTTCAAACGG+TGG + chr4_1:86066374-86066393 None:intergenic 30.0%
! CGTTTGAAATAATAGGAATG+TGG - chr4_1:86066375-86066394 Msa0580800:intron 30.0%
ATAATAGGAATGTGGTTGTT+AGG - chr4_1:86066383-86066402 Msa0580800:intron 30.0%
TGATTATTGACACTATTCAC+AGG - chr4_1:86066663-86066682 Msa0580800:intron 30.0%
TAACTGGGTTTAATTCACAT+GGG - chr4_1:86066691-86066710 Msa0580800:intron 30.0%
!! TCCATTAATTTGTTCTGAGT+GGG - chr4_1:86066791-86066810 Msa0580800:CDS 30.0%
GACATGACATAACCAAATAA+TGG + chr4_1:86066825-86066844 None:intergenic 30.0%
TGGTTAAATCCAAAAAAACC+CGG - chr4_1:86066856-86066875 Msa0580800:CDS 30.0%
ATCTAATTGATGTGAAAACC+GGG + chr4_1:86066877-86066896 None:intergenic 30.0%
!! ATCTTTGAAGTGAGAAAGTA+AGG - chr4_1:86066914-86066933 Msa0580800:CDS 30.0%
CATTCAACTCTATAAAAACC+CGG - chr4_1:86066953-86066972 Msa0580800:intron 30.0%
AGTCTAATTGATGTGAAAAC+CGG + chr4_1:86066975-86066994 None:intergenic 30.0%
TGCTTCATCAACTACAATTA+TGG - chr4_1:86067120-86067139 Msa0580800:intron 30.0%
!!! CGTTTTGGTTTTTCAATTTC+AGG + chr4_1:86067379-86067398 None:intergenic 30.0%
TCCTAGAGATTTAGTTACTA+AGG - chr4_1:86067678-86067697 Msa0580800:intron 30.0%
TCCTTAGTAACTAAATCTCT+AGG + chr4_1:86067682-86067701 None:intergenic 30.0%
TAGAGATTTAGTTACTAAGG+AGG - chr4_1:86067681-86067700 Msa0580800:intron 30.0%
ACAGTCTCTTCTAAATCTTT+GGG + chr4_1:86067811-86067830 None:intergenic 30.0%
AACAGTCTCTTCTAAATCTT+TGG + chr4_1:86067812-86067831 None:intergenic 30.0%
!!! ATTTTGCTGTTAGTTGAAGA+TGG + chr4_1:86068099-86068118 None:intergenic 30.0%
!!! ATACTGCTTTGTCACTTTTA+TGG + chr4_1:86068176-86068195 None:intergenic 30.0%
! GGTGTGATATTTTCTTTTTC+AGG + chr4_1:86068280-86068299 None:intergenic 30.0%
TTTCTCCAAAATTTGATTGC+AGG - chr4_1:86068410-86068429 Msa0580800:intron 30.0%
! TTGAACCTGCAATCAAATTT+TGG + chr4_1:86068418-86068437 None:intergenic 30.0%
! ATTTGAGGAAGACTATTTTC+CGG - chr4_1:86068684-86068703 Msa0580800:intron 30.0%
! GAGAGTGATTTGTACATTAT+AGG - chr4_1:86068826-86068845 Msa0580800:intron 30.0%
AATAATGCTCGAAAACAAAC+AGG + chr4_1:86068892-86068911 None:intergenic 30.0%
!! TTGTTTTCGAGCATTATTTC+TGG - chr4_1:86068894-86068913 Msa0580800:intron 30.0%
!! TGTTTTCGAGCATTATTTCT+GGG - chr4_1:86068895-86068914 Msa0580800:intron 30.0%
TTAAGATCATACACACTTCA+GGG + chr4_1:86068944-86068963 None:intergenic 30.0%
ATAAGTACTTTGTAACACCT+AGG + chr4_1:86068977-86068996 None:intergenic 30.0%
!! ATTATTTGGTTCTGCTTCAC+AGG - chr4_1:86062012-86062031 Msa0580800:three_prime_UTR 35.0%
! GAATCAGTGTTTGAAATTGG+TGG + chr4_1:86062112-86062131 None:intergenic 35.0%
! ATTACATTCTCCGTGTTTTG+TGG - chr4_1:86062212-86062231 Msa0580800:intron 35.0%
GAACATAGAACCACAAAACA+CGG + chr4_1:86062225-86062244 None:intergenic 35.0%
TAAGCTACTATTATTGTCGG+TGG - chr4_1:86062354-86062373 Msa0580800:intron 35.0%
AAGTCAATGTATGTGTGTGA+CGG - chr4_1:86062398-86062417 Msa0580800:intron 35.0%
ACGGTCCAATCATGTTAAAA+AGG - chr4_1:86062417-86062436 Msa0580800:intron 35.0%
TAAATTATGCCTGTTCTGGT+TGG - chr4_1:86062561-86062580 Msa0580800:intron 35.0%
! AAATTATGCCTGTTCTGGTT+GGG - chr4_1:86062562-86062581 Msa0580800:intron 35.0%
TACAGATCTTGGTATCACAA+TGG - chr4_1:86063276-86063295 Msa0580800:CDS 35.0%
ACAGATCTTGGTATCACAAT+GGG - chr4_1:86063277-86063296 Msa0580800:CDS 35.0%
!! ACAGTTTTGATCCATTTTCC+TGG + chr4_1:86063310-86063329 None:intergenic 35.0%
TGGATCAAAACTGTACTGTT+TGG - chr4_1:86063316-86063335 Msa0580800:CDS 35.0%
GGATCAAAACTGTACTGTTT+GGG - chr4_1:86063317-86063336 Msa0580800:CDS 35.0%
AAATATACCAAGAGGAAGAG+AGG - chr4_1:86063357-86063376 Msa0580800:CDS 35.0%
CTGTAATGCCATGATAGTTA+AGG - chr4_1:86063385-86063404 Msa0580800:CDS 35.0%
GTTGTCATAGATAGACAGAA+AGG - chr4_1:86063580-86063599 Msa0580800:CDS 35.0%
! GACATCAGGATTTTCATTAC+CGG + chr4_1:86063822-86063841 None:intergenic 35.0%
! GAAGCAGAAAATGTTTTACC+TGG - chr4_1:86063983-86064002 Msa0580800:intron 35.0%
AGATCAAGAAATTGACACAG+TGG - chr4_1:86064006-86064025 Msa0580800:intron 35.0%
GATCAAGAAATTGACACAGT+GGG - chr4_1:86064007-86064026 Msa0580800:intron 35.0%
AATTCTCGAAAGCTTCTTGT+TGG - chr4_1:86064529-86064548 Msa0580800:intron 35.0%
! AGAGCATTTAGAGCCTTAAA+AGG - chr4_1:86064819-86064838 Msa0580800:intron 35.0%
! GAGCCTTAAAAGGCATAATA+AGG - chr4_1:86064829-86064848 Msa0580800:intron 35.0%
AAATTACAAGCACTTGTTCG+TGG - chr4_1:86064927-86064946 Msa0580800:intron 35.0%
!!! CTTACCTTGTTTTACACAAG+AGG + chr4_1:86065144-86065163 None:intergenic 35.0%
CTCTTGTGTAAAACAAGGTA+AGG - chr4_1:86065142-86065161 Msa0580800:intron 35.0%
AAAAAAAAAAAGGGGCAACC+CGG + chr4_1:86065234-86065253 None:intergenic 35.0%
AGGACTTACTGTGCAAATAA+AGG - chr4_1:86065474-86065493 Msa0580800:intron 35.0%
!! CTCCTTGCTGTTCAAATAAA+TGG - chr4_1:86065522-86065541 Msa0580800:intron 35.0%
ACCCATTTATTTGAACAGCA+AGG + chr4_1:86065527-86065546 None:intergenic 35.0%
CAACAAGTCAGTGATAAGAA+AGG - chr4_1:86065796-86065815 Msa0580800:intron 35.0%
! TTCTCAATGTGTTTTTCCTC+AGG - chr4_1:86065875-86065894 Msa0580800:CDS 35.0%
TGTAATGTAGGTTACCTTAC+GGG + chr4_1:86065967-86065986 None:intergenic 35.0%
GTGTAATGTAGGTTACCTTA+CGG + chr4_1:86065968-86065987 None:intergenic 35.0%
!!! GCTAGATCAGTTTTTTTCTG+TGG - chr4_1:86066008-86066027 Msa0580800:intron 35.0%
AGCAATCATGCATAAAACAG+AGG - chr4_1:86066201-86066220 Msa0580800:intron 35.0%
TATATTATTCGTGGCATCTC+AGG - chr4_1:86066235-86066254 Msa0580800:intron 35.0%
ATATTATTCGTGGCATCTCA+GGG - chr4_1:86066236-86066255 Msa0580800:intron 35.0%
AGAGATCACTTGAGTAATTG+GGG + chr4_1:86066276-86066295 None:intergenic 35.0%
CAGAGATCACTTGAGTAATT+GGG + chr4_1:86066277-86066296 None:intergenic 35.0%
ACAGAGATCACTTGAGTAAT+TGG + chr4_1:86066278-86066297 None:intergenic 35.0%
GGGAGAAATTATAGGAATGT+AGG - chr4_1:86066319-86066338 Msa0580800:intron 35.0%
GAAATTATAGGAATGTAGGG+GGG - chr4_1:86066323-86066342 Msa0580800:intron 35.0%
! GAATTAGTCTACATGCAACT+GGG + chr4_1:86066613-86066632 None:intergenic 35.0%
! TGAATTAGTCTACATGCAAC+TGG + chr4_1:86066614-86066633 None:intergenic 35.0%
TATTGACACTATTCACAGGA+AGG - chr4_1:86066667-86066686 Msa0580800:intron 35.0%
CTAACTGGGTTTAATTCACA+TGG - chr4_1:86066690-86066709 Msa0580800:intron 35.0%
AACTGGGTTTAATTCACATG+GGG - chr4_1:86066692-86066711 Msa0580800:intron 35.0%
!! GTCCATTAATTTGTTCTGAG+TGG - chr4_1:86066790-86066809 Msa0580800:CDS 35.0%
!! CCATTAATTTGTTCTGAGTG+GGG - chr4_1:86066792-86066811 Msa0580800:CDS 35.0%
! TGGGGTTTTTGTCCATTATT+TGG - chr4_1:86066810-86066829 Msa0580800:CDS 35.0%
!!! ATGTGAAAACCGGGTTTTTT+TGG + chr4_1:86066868-86066887 None:intergenic 35.0%
GTCTAATTGATGTGAAAACC+GGG + chr4_1:86066974-86066993 None:intergenic 35.0%
CTTCTATTACAATTTGCCTC+TGG - chr4_1:86067074-86067093 Msa0580800:intron 35.0%
GAAACAACAAATAGATCCAG+AGG + chr4_1:86067093-86067112 None:intergenic 35.0%
ACAAACATATTGCAAACGCA+GGG + chr4_1:86067146-86067165 None:intergenic 35.0%
ATCCAAATTCAGTCCTTAGT+TGG - chr4_1:86067170-86067189 Msa0580800:intron 35.0%
! TTAGTATCCCGGATTTTCTT+GGG + chr4_1:86067241-86067260 None:intergenic 35.0%
!!! TTTTCTGAGACTTAGTATCC+CGG + chr4_1:86067252-86067271 None:intergenic 35.0%
TACTAAGTCTCAGAAAAAGC+AGG - chr4_1:86067255-86067274 Msa0580800:intron 35.0%
ACTAAGTCTCAGAAAAAGCA+GGG - chr4_1:86067256-86067275 Msa0580800:intron 35.0%
AAGCAGGGTAATATTTCAAC+TGG - chr4_1:86067271-86067290 Msa0580800:intron 35.0%
AAAAACCAAAACGAAACGCA+AGG - chr4_1:86067386-86067405 Msa0580800:intron 35.0%
! AATTTCCTTGCGTTTCGTTT+TGG + chr4_1:86067394-86067413 None:intergenic 35.0%
ATCTCAGATTCAACTTCTGA+CGG + chr4_1:86067523-86067542 None:intergenic 35.0%
! ACTGTTTCCTTTTCCAAATG+AGG + chr4_1:86067553-86067572 None:intergenic 35.0%
GGTCATTAGTTCCAATGAAA+TGG - chr4_1:86067603-86067622 Msa0580800:intron 35.0%
!! GTAACTAAATCTCTAGGACT+AGG + chr4_1:86067676-86067695 None:intergenic 35.0%
ACATTCACCTGATAACTGTT+TGG + chr4_1:86067718-86067737 None:intergenic 35.0%
AAACAGTTATCAGGTGAATG+TGG - chr4_1:86067717-86067736 Msa0580800:intron 35.0%
AAACGGAGATTTGAATCACA+AGG - chr4_1:86067858-86067877 Msa0580800:intron 35.0%
AATCACAAGGAAGATCAAAC+AGG - chr4_1:86067871-86067890 Msa0580800:intron 35.0%
! TCTTCTTCTAGAGATGGAAA+TGG - chr4_1:86068195-86068214 Msa0580800:intron 35.0%
! TGGTGAATTTTCTATGCAGA+AGG + chr4_1:86068235-86068254 None:intergenic 35.0%
TACGCCAGAATAAACAAACA+TGG + chr4_1:86068572-86068591 None:intergenic 35.0%
AACTATTCCGTTATTCTTGC+AGG - chr4_1:86068631-86068650 Msa0580800:intron 35.0%
TACCTTTCCTGCAAGAATAA+CGG + chr4_1:86068641-86068660 None:intergenic 35.0%
CAATTTCTTCATGTCAACTC+CGG + chr4_1:86068706-86068725 None:intergenic 35.0%
GATCAAACACACCTATAGTT+CGG + chr4_1:86068777-86068796 None:intergenic 35.0%
! AGTTTATCTTCGCTGCATTT+TGG - chr4_1:86068798-86068817 Msa0580800:intron 35.0%
GTTAAGATCATACACACTTC+AGG + chr4_1:86068945-86068964 None:intergenic 35.0%
ATGTGTAAGTTAGTCACACG+TGG + chr4_1:86061738-86061757 None:intergenic 40.0%
TCTCTCACTGTCTTCTTCTA+TGG - chr4_1:86061880-86061899 Msa0580800:three_prime_UTR 40.0%
AAGTGAGGAGAAAAGAAGAC+AGG + chr4_1:86061929-86061948 None:intergenic 40.0%
GAACAACTTCCACATTGGTA+AGG - chr4_1:86062052-86062071 Msa0580800:three_prime_UTR 40.0%
!! GTTTGAAATTGGTGGTGAAG+AGG + chr4_1:86062104-86062123 None:intergenic 40.0%
!! TACTAGATCTCGTCGATTCT+AGG - chr4_1:86062171-86062190 Msa0580800:intron 40.0%
!! ACTAGATCTCGTCGATTCTA+GGG - chr4_1:86062172-86062191 Msa0580800:intron 40.0%
GAGACATGAAGCGTAATTTG+TGG - chr4_1:86062303-86062322 Msa0580800:intron 40.0%
CTATTATTGTCGGTGGCTTA+CGG - chr4_1:86062361-86062380 Msa0580800:intron 40.0%
TCAGTCTCTAAATGGATCCT+AGG + chr4_1:86063239-86063258 None:intergenic 40.0%
AGGCGATATCAGTCTCTAAA+TGG + chr4_1:86063247-86063266 None:intergenic 40.0%
ATCACAATGGGTAAATCACC+AGG - chr4_1:86063289-86063308 Msa0580800:CDS 40.0%
TGGGTAAATCACCAGGAAAA+TGG - chr4_1:86063296-86063315 Msa0580800:CDS 40.0%
AACTGTACTGTTTGGGAAGA+AGG - chr4_1:86063324-86063343 Msa0580800:CDS 40.0%
AGATTTACCTCTCTTCCTCT+TGG + chr4_1:86063367-86063386 None:intergenic 40.0%
!! TAGATCTGATGATGCCGTTT+TGG + chr4_1:86063550-86063569 None:intergenic 40.0%
AGGAAGCAGACATTATGCTT+TGG - chr4_1:86063600-86063619 Msa0580800:CDS 40.0%
ATGCACACTAGTTGTTGCAT+TGG - chr4_1:86063708-86063727 Msa0580800:intron 40.0%
! AGTTGTTGCTTCCAAGGTTT+CGG - chr4_1:86063886-86063905 Msa0580800:intron 40.0%
TAAACCAGTTTCCGAAACCT+TGG + chr4_1:86063900-86063919 None:intergenic 40.0%
GTGTCAATTTCTTGATCTCC+AGG + chr4_1:86064004-86064023 None:intergenic 40.0%
TTCATCTTCTCTGGATCAAG+TGG + chr4_1:86064052-86064071 None:intergenic 40.0%
! AAAAACACAGGCTGCTTTCA+GGG - chr4_1:86064090-86064109 Msa0580800:intron 40.0%
!! AAAGGCACTTAGAGTTCCAT+CGG + chr4_1:86064154-86064173 None:intergenic 40.0%
AGTGCACTTTCTGATTGTAG+TGG - chr4_1:86064226-86064245 Msa0580800:intron 40.0%
TGTTGGAGATCAATACCTCT+TGG - chr4_1:86064546-86064565 Msa0580800:intron 40.0%
ACATATCAGTGAGAACCAAG+AGG + chr4_1:86064564-86064583 None:intergenic 40.0%
TCGATGAAAGAATTGGCAAG+TGG - chr4_1:86064681-86064700 Msa0580800:intron 40.0%
AAATGTCTCTATTGAAGGCC+CGG - chr4_1:86064796-86064815 Msa0580800:intron 40.0%
!! TTAAGGCTCTAAATGCTCTC+CGG + chr4_1:86064818-86064837 None:intergenic 40.0%
AGGTTACAAGCACTTATTCG+TGG - chr4_1:86064849-86064868 Msa0580800:CDS 40.0%
GGTTACAAGCACTTATTCGT+GGG - chr4_1:86064850-86064869 Msa0580800:CDS 40.0%
! GCTACTTTGTGCTGTATGTA+TGG - chr4_1:86064897-86064916 Msa0580800:CDS 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr4_1:86065093-86065112 Msa0580800:intron 40.0%
ACAGCCTCTTGTGTAAAACA+AGG - chr4_1:86065137-86065156 Msa0580800:intron 40.0%
CTCTAATTTCAGTTTGGGCA+AGG + chr4_1:86065354-86065373 None:intergenic 40.0%
ACAATTTACGGGATAAGGCT+TGG + chr4_1:86065402-86065421 None:intergenic 40.0%
! AGTCCTCATTTTGAATGTCG+TGG + chr4_1:86065460-86065479 None:intergenic 40.0%
AAGTCAGTGATAAGAAAGGG+AGG - chr4_1:86065800-86065819 Msa0580800:CDS 40.0%
AGTCAGTGATAAGAAAGGGA+GGG - chr4_1:86065801-86065820 Msa0580800:CDS 40.0%
!! GATATAGCAATTGGCTTGAC+AGG + chr4_1:86065909-86065928 None:intergenic 40.0%
GTCAAGCCAATTGCTATATC+TGG - chr4_1:86065909-86065928 Msa0580800:CDS 40.0%
TTCTCGAAAGAAACTCAGTC+TGG + chr4_1:86066043-86066062 None:intergenic 40.0%
! ATGGTGGAGGGAGAAATTAT+AGG - chr4_1:86066311-86066330 Msa0580800:intron 40.0%
! GACCCACCGTTTGAAATAAT+AGG - chr4_1:86066368-86066387 Msa0580800:intron 40.0%
GAAATGCAATCTTCAAGCTG+AGG - chr4_1:86066471-86066490 Msa0580800:intron 40.0%
CAATCTTCAAGCTGAGGTTT+AGG - chr4_1:86066477-86066496 Msa0580800:intron 40.0%
GATTAAGAACACACACGGTT+AGG + chr4_1:86066591-86066610 None:intergenic 40.0%
ACTGGGATTAAGAACACACA+CGG + chr4_1:86066596-86066615 None:intergenic 40.0%
TATTCACAGGAAGGCTAACT+GGG - chr4_1:86066676-86066695 Msa0580800:intron 40.0%
ACTGGGTTTAATTCACATGG+GGG - chr4_1:86066693-86066712 Msa0580800:intron 40.0%
CCCCACTCAGAACAAATTAA+TGG + chr4_1:86066795-86066814 None:intergenic 40.0%
CACAAACATATTGCAAACGC+AGG + chr4_1:86067147-86067166 None:intergenic 40.0%
CTGCGTTTGCAATATGTTTG+TGG - chr4_1:86067145-86067164 Msa0580800:intron 40.0%
GACCAACTAAGGACTGAATT+TGG + chr4_1:86067175-86067194 None:intergenic 40.0%
!!! ATTTTCTTGGGTTGGGGAAT+TGG + chr4_1:86067229-86067248 None:intergenic 40.0%
! CTTAGTATCCCGGATTTTCT+TGG + chr4_1:86067242-86067261 None:intergenic 40.0%
GCTAGGTCAAAATTTGCAGT+AGG + chr4_1:86067340-86067359 None:intergenic 40.0%
! TTTTCCAGCAAAGGATCTGA+GGG + chr4_1:86067427-86067446 None:intergenic 40.0%
! ATTTTCCAGCAAAGGATCTG+AGG + chr4_1:86067428-86067447 None:intergenic 40.0%
! ATCTGTGGATTTTCCAGCAA+AGG + chr4_1:86067436-86067455 None:intergenic 40.0%
! GGTTAAACGTAACTTGCGAA+AGG - chr4_1:86067468-86067487 Msa0580800:CDS 40.0%
TGAGATTCCAAAGCCTCATT+TGG - chr4_1:86067537-86067556 Msa0580800:intron 40.0%
TCCAAAGCCTCATTTGGAAA+AGG - chr4_1:86067543-86067562 Msa0580800:intron 40.0%
! TCCTTTTCCAAATGAGGCTT+TGG + chr4_1:86067547-86067566 None:intergenic 40.0%
!! TTCTGAAACACCAACACTTG+AGG + chr4_1:86067578-86067597 None:intergenic 40.0%
!! AGTGTTGGTGTTTCAGAACA+AGG - chr4_1:86067580-86067599 Msa0580800:intron 40.0%
! GTGTTGGTGTTTCAGAACAA+GGG - chr4_1:86067581-86067600 Msa0580800:intron 40.0%
! TGTTGGTGTTTCAGAACAAG+GGG - chr4_1:86067582-86067601 Msa0580800:intron 40.0%
TTCCAATGAAATGGCCAGAA+AGG - chr4_1:86067612-86067631 Msa0580800:intron 40.0%
! TTCCTTTCTGGCCATTTCAT+TGG + chr4_1:86067617-86067636 None:intergenic 40.0%
GGTTAACATTGCTTCCTTTC+TGG + chr4_1:86067629-86067648 None:intergenic 40.0%
TGACACTCCAAACAGTTATC+AGG - chr4_1:86067708-86067727 Msa0580800:intron 40.0%
! TAGCTCCAGTTGAGGTTTTT+CGG + chr4_1:86067918-86067937 None:intergenic 40.0%
TCCGACGATACCAAGTTATA+TGG - chr4_1:86067972-86067991 Msa0580800:intron 40.0%
GCCATATAACTTGGTATCGT+CGG + chr4_1:86067976-86067995 None:intergenic 40.0%
TCAGTTGCTGCCATATAACT+TGG + chr4_1:86067985-86068004 None:intergenic 40.0%
AATCTGCCAAGGCAAAATTG+AGG - chr4_1:86068004-86068023 Msa0580800:intron 40.0%
ATCTGCCAAGGCAAAATTGA+GGG - chr4_1:86068005-86068024 Msa0580800:intron 40.0%
TCACCAAAAGTCGTACAAGA+TGG - chr4_1:86068036-86068055 Msa0580800:intron 40.0%
! CTTCCATCTTGTACGACTTT+TGG + chr4_1:86068042-86068061 None:intergenic 40.0%
GTGAGAAAAACAACAGTGCT+CGG - chr4_1:86068061-86068080 Msa0580800:intron 40.0%
AAATCAGTTCGCATTCACCT+AGG - chr4_1:86068115-86068134 Msa0580800:intron 40.0%
CAGTTCATTCAGGTGGTAAA+GGG - chr4_1:86068148-86068167 Msa0580800:intron 40.0%
AGTTCATTCAGGTGGTAAAG+GGG - chr4_1:86068149-86068168 Msa0580800:intron 40.0%
! GCAGTATCTTCTTCTAGAGA+TGG - chr4_1:86068189-86068208 Msa0580800:intron 40.0%
TTCCGTTATTCTTGCAGGAA+AGG - chr4_1:86068636-86068655 Msa0580800:intron 40.0%
GAAAGGTAGTTCAAGCAGAA+TGG - chr4_1:86068653-86068672 Msa0580800:intron 40.0%
TAGTTCAAGCAGAATGGAAG+AGG - chr4_1:86068659-86068678 Msa0580800:intron 40.0%
AGAATGGAAGAGGTGATTTG+AGG - chr4_1:86068669-86068688 Msa0580800:intron 40.0%
TGCTGAATTGACCGAACTAT+AGG - chr4_1:86068763-86068782 Msa0580800:intron 40.0%
ATCTTAACACGTACCTTCCT+AGG - chr4_1:86068957-86068976 Msa0580800:five_prime_UTR 40.0%
GTACTTTGTAACACCTAGGA+AGG + chr4_1:86068973-86068992 None:intergenic 40.0%
!! TTGGTTCTGCTTCACAGGAA+TGG - chr4_1:86062017-86062036 Msa0580800:three_prime_UTR 45.0%
GAGCTGAACAACTTCCACAT+TGG - chr4_1:86062047-86062066 Msa0580800:three_prime_UTR 45.0%
GTGGTGAAGAGGTTGTTTGA+GGG + chr4_1:86062093-86062112 None:intergenic 45.0%
!! AACCAAGCACTGAAAGAAGC+TGG - chr4_1:86063041-86063060 Msa0580800:CDS 45.0%
CACTGAAAGAAGCTGGCTAT+AGG - chr4_1:86063048-86063067 Msa0580800:CDS 45.0%
! ATGTACGGCAATAGTGTTGG+AGG + chr4_1:86063936-86063955 None:intergenic 45.0%
CACATGTACGGCAATAGTGT+TGG + chr4_1:86063939-86063958 None:intergenic 45.0%
CAACACTATTGCCGTACATG+TGG - chr4_1:86063937-86063956 Msa0580800:intron 45.0%
CTTCTTTATTCTCCAGCTCC+AGG + chr4_1:86063967-86063986 None:intergenic 45.0%
AGTGGTGCATCTTGATCAAC+AGG + chr4_1:86064034-86064053 None:intergenic 45.0%
TGATCCAGAGAAGATGAAGC+TGG - chr4_1:86064054-86064073 Msa0580800:intron 45.0%
GGAAGCAGCTACAAAAACAC+AGG - chr4_1:86064078-86064097 Msa0580800:intron 45.0%
! CAAAAACACAGGCTGCTTTC+AGG - chr4_1:86064089-86064108 Msa0580800:intron 45.0%
! AAAACACAGGCTGCTTTCAG+GGG - chr4_1:86064091-86064110 Msa0580800:intron 45.0%
! ACATTGCTTGATAGCTGCTC+TGG + chr4_1:86064453-86064472 None:intergenic 45.0%
!! TAAGGCTCTAAATGCTCTCC+GGG + chr4_1:86064817-86064836 None:intergenic 45.0%
GTGCAATCTATTGAAGCTCC+AGG - chr4_1:86064995-86065014 Msa0580800:intron 45.0%
TATTTGTCGAGGGGTAACCT+TGG - chr4_1:86065057-86065076 Msa0580800:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr4_1:86065099-86065118 Msa0580800:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr4_1:86065100-86065119 Msa0580800:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr4_1:86065164-86065183 Msa0580800:intron 45.0%
! TCTTCTGATTAGTCCATGGG+TGG - chr4_1:86065289-86065308 Msa0580800:intron 45.0%
! CTTCTGATTAGTCCATGGGT+GGG - chr4_1:86065290-86065309 Msa0580800:intron 45.0%
! TTCTGATTAGTCCATGGGTG+GGG - chr4_1:86065291-86065310 Msa0580800:intron 45.0%
TCAGTTTGGGCAAGGAAATC+AGG + chr4_1:86065346-86065365 None:intergenic 45.0%
GATCATAATTCTTGCTGGGC+TGG - chr4_1:86065431-86065450 Msa0580800:intron 45.0%
CAGCCACGACATTCAAAATG+AGG - chr4_1:86065454-86065473 Msa0580800:intron 45.0%
! GTGCAAATAAAGGTGCAAGC+TGG - chr4_1:86065484-86065503 Msa0580800:intron 45.0%
!! CAAGCTGGTGCTTTAAAGCT+TGG - chr4_1:86065499-86065518 Msa0580800:intron 45.0%
GTCAGTGATAAGAAAGGGAG+GGG - chr4_1:86065802-86065821 Msa0580800:CDS 45.0%
!! AGCAATTGGCTTGACAGGTT+TGG + chr4_1:86065904-86065923 None:intergenic 45.0%
AGCAAACACTTTCACCCGTA+AGG - chr4_1:86065950-86065969 Msa0580800:CDS 45.0%
CTATTCACAGGAAGGCTAAC+TGG - chr4_1:86066675-86066694 Msa0580800:intron 45.0%
TTCCCCAACCCAAGAAAATC+CGG - chr4_1:86067230-86067249 Msa0580800:intron 45.0%
! ATCCCGGATTTTCTTGGGTT+GGG + chr4_1:86067236-86067255 None:intergenic 45.0%
! TATCCCGGATTTTCTTGGGT+TGG + chr4_1:86067237-86067256 None:intergenic 45.0%
! TTTCAGGGTTTGCTTGTGCT+GGG + chr4_1:86067363-86067382 None:intergenic 45.0%
! ATTTCAGGGTTTGCTTGTGC+TGG + chr4_1:86067364-86067383 None:intergenic 45.0%
TCCACAGATTGAGCTTGAGA+AGG - chr4_1:86067447-86067466 Msa0580800:CDS 45.0%
ACCTTCTCAAGCTCAATCTG+TGG + chr4_1:86067451-86067470 None:intergenic 45.0%
GAACTGCAGCTTCAACAACT+GGG + chr4_1:86067501-86067520 None:intergenic 45.0%
GAAACAGTTGCCTCAAGTGT+TGG - chr4_1:86067565-86067584 Msa0580800:intron 45.0%
TTAACCAGTGAGCCAGAGAT+GGG - chr4_1:86067643-86067662 Msa0580800:intron 45.0%
CTAGGAGTAATTCCCATCTC+TGG + chr4_1:86067658-86067677 None:intergenic 45.0%
!!! AGGTTTTTCGGGTTGGTTTC+TGG + chr4_1:86067906-86067925 None:intergenic 45.0%
! AGCTCCAGTTGAGGTTTTTC+GGG + chr4_1:86067917-86067936 None:intergenic 45.0%
! TTGAGCCCTCAATTTTGCCT+TGG + chr4_1:86068013-86068032 None:intergenic 45.0%
AAGGCAAAATTGAGGGCTCA+AGG - chr4_1:86068012-86068031 Msa0580800:intron 45.0%
GCTGTTAGTTGAAGATGGCA+GGG + chr4_1:86068094-86068113 None:intergenic 45.0%
TGCTGTTAGTTGAAGATGGC+AGG + chr4_1:86068095-86068114 None:intergenic 45.0%
ACACAGAGACCAGTTCATTC+AGG - chr4_1:86068138-86068157 Msa0580800:intron 45.0%
CCTTTACCACCTGAATGAAC+TGG + chr4_1:86068150-86068169 None:intergenic 45.0%
CCAGTTCATTCAGGTGGTAA+AGG - chr4_1:86068147-86068166 Msa0580800:intron 45.0%
GTTCATTCAGGTGGTAAAGG+GGG - chr4_1:86068150-86068169 Msa0580800:intron 45.0%
!! ATAATAAAAAAAAAAAAAAG+GGG + chr4_1:86065242-86065261 None:intergenic 5.0%
GGTGGTGAAGAGGTTGTTTG+AGG + chr4_1:86062094-86062113 None:intergenic 50.0%
TTATTGTCGGTGGCTTACGG+TGG - chr4_1:86062364-86062383 Msa0580800:intron 50.0%
! ATGCCTGTTCTGGTTGGGTT+CGG - chr4_1:86062567-86062586 Msa0580800:intron 50.0%
AAACCGAACCCAACCAGAAC+AGG + chr4_1:86062573-86062592 None:intergenic 50.0%
AGCCAGCTTCTTTCAGTGCT+TGG + chr4_1:86063046-86063065 None:intergenic 50.0%
! GGAAGGAGTTGTTGCTTCCA+AGG - chr4_1:86063880-86063899 Msa0580800:intron 50.0%
GCTTCCAAGGTTTCGGAAAC+TGG - chr4_1:86063893-86063912 Msa0580800:intron 50.0%
! ACGGCAATAGTGTTGGAGGT+TGG + chr4_1:86063932-86063951 None:intergenic 50.0%
CTCCAGGTCTTCCACATGTA+CGG + chr4_1:86063951-86063970 None:intergenic 50.0%
TCCAGAGAAGATGAAGCTGG+AGG - chr4_1:86064057-86064076 Msa0580800:intron 50.0%
TCCTCCAGCTTCATCTTCTC+TGG + chr4_1:86064061-86064080 None:intergenic 50.0%
! GGCTGCTTTCAGGGGTTATT+TGG - chr4_1:86064099-86064118 Msa0580800:intron 50.0%
AGCACTTATTCGTGGGCACT+TGG - chr4_1:86064857-86064876 Msa0580800:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4_1:86065077-86065096 None:intergenic 50.0%
GTGCAATGCACAAGCTGTTG+CGG - chr4_1:86065626-86065645 Msa0580800:intron 50.0%
AGTGATAAGAAAGGGAGGGG+AGG - chr4_1:86065805-86065824 Msa0580800:CDS 50.0%
TTGACAGGTTTGGCATCCTG+AGG + chr4_1:86065894-86065913 None:intergenic 50.0%
TCCCCAACCCAAGAAAATCC+GGG - chr4_1:86067231-86067250 Msa0580800:intron 50.0%
!! TCCCGGATTTTCTTGGGTTG+GGG + chr4_1:86067235-86067254 None:intergenic 50.0%
CCTGTGGGTACGTTTAGACT+TGG + chr4_1:86067311-86067330 None:intergenic 50.0%
CCAAGTCTAAACGTACCCAC+AGG - chr4_1:86067308-86067327 Msa0580800:intron 50.0%
TGCAGTAGGAAGCTTCCTGT+GGG + chr4_1:86067326-86067345 None:intergenic 50.0%
TTGCAGTAGGAAGCTTCCTG+TGG + chr4_1:86067327-86067346 None:intergenic 50.0%
! TTCAGGGTTTGCTTGTGCTG+GGG + chr4_1:86067362-86067381 None:intergenic 50.0%
!! AAAGGATCTGAGGGTTGGCT+AGG + chr4_1:86067418-86067437 None:intergenic 50.0%
GGAACTGCAGCTTCAACAAC+TGG + chr4_1:86067502-86067521 None:intergenic 50.0%
GTTAACCAGTGAGCCAGAGA+TGG - chr4_1:86067642-86067661 Msa0580800:intron 50.0%
! AATTCCCATCTCTGGCTCAC+TGG + chr4_1:86067650-86067669 None:intergenic 50.0%
!!! CCAGTTGAGGTTTTTCGGGT+TGG + chr4_1:86067913-86067932 None:intergenic 50.0%
CCAACCCGAAAAACCTCAAC+TGG - chr4_1:86067910-86067929 Msa0580800:intron 50.0%
AACCTCAACTGGAGCTAAGC+AGG - chr4_1:86067921-86067940 Msa0580800:intron 50.0%
TTCCTGCTTAGCTCCAGTTG+AGG + chr4_1:86067926-86067945 None:intergenic 50.0%
AAGCAGGAACGTGCAGAGAA+TGG - chr4_1:86067937-86067956 Msa0580800:intron 50.0%
! TGAACTGGTCTCTGTGTCCT+AGG + chr4_1:86068135-86068154 None:intergenic 50.0%
CAGAGACCAGTTCATTCAGG+TGG - chr4_1:86068141-86068160 Msa0580800:intron 50.0%
CTCTCTGTCACTGTGCTAGC+TGG + chr4_1:86061812-86061831 None:intergenic 55.0%
TGCCGTACATGTGGAAGACC+TGG - chr4_1:86063946-86063965 Msa0580800:intron 55.0%
ACATGTGGAAGACCTGGAGC+TGG - chr4_1:86063952-86063971 Msa0580800:intron 55.0%
AAGGTCACGGGTTCAAGTCG+TGG - chr4_1:86065112-86065131 Msa0580800:intron 55.0%
CAAATGGTGAGACCCCTTCC+CGG - chr4_1:86065180-86065199 Msa0580800:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr4_1:86065207-86065226 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr4_1:86065208-86065227 None:intergenic 55.0%
! GATTAGTCCATGGGTGGGGT+TGG - chr4_1:86065295-86065314 Msa0580800:intron 55.0%
TCATATGCCAACCCCACCCA+TGG + chr4_1:86065305-86065324 None:intergenic 55.0%
! GTAGGGGGGCACAGTCTATT+TGG - chr4_1:86066337-86066356 Msa0580800:intron 55.0%
! TCCTTAGTTGGTCTGAGCGC+TGG - chr4_1:86067182-86067201 Msa0580800:intron 55.0%
ACCAGCGCTCAGACCAACTA+AGG + chr4_1:86067186-86067205 None:intergenic 55.0%
!!! GCTGGTCAGCATGTCGGTTT+TGG - chr4_1:86067200-86067219 Msa0580800:intron 55.0%
CCAGCAAAGGATCTGAGGGT+TGG + chr4_1:86067423-86067442 None:intergenic 55.0%
CCAACCCTCAGATCCTTTGC+TGG - chr4_1:86067420-86067439 Msa0580800:intron 55.0%
GGCAGCAACTGAATCTGCCA+AGG - chr4_1:86067993-86068012 Msa0580800:intron 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4_1:86065066-86065085 Msa0580800:intron 60.0%
CGGGAAGGGGTCTCACCATT+TGG + chr4_1:86065182-86065201 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_1:86065195-86065214 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4_1:86065196-86065215 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4_1:86065195-86065214 Msa0580800:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4_1:86065196-86065215 Msa0580800:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr4_1:86065212-86065231 Msa0580800:intron 60.0%
!! CTGAGCGCTGGTCAGCATGT+CGG - chr4_1:86067194-86067213 Msa0580800:intron 60.0%
! GGTTTGCTTGTGCTGGGGCT+AGG + chr4_1:86067357-86067376 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4_1:86065197-86065216 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4_1:86065201-86065220 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4_1:86065202-86065221 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr4_1:86065213-86065232 Msa0580800:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86061732 86069083 86061732 ID=Msa0580800;Name=Msa0580800
chr4_1 mRNA 86061732 86069083 86061732 ID=Msa0580800-mRNA-1;Parent=Msa0580800;Name=Msa0580800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=224|1|1|1|0.71|0.75|8|399|584
chr4_1 exon 86061732 86062162 86061732 ID=Msa0580800-mRNA-1:exon:31701;Parent=Msa0580800-mRNA-1
chr4_1 exon 86062599 86063700 86062599 ID=Msa0580800-mRNA-1:exon:31700;Parent=Msa0580800-mRNA-1
chr4_1 exon 86064844 86064918 86064844 ID=Msa0580800-mRNA-1:exon:31699;Parent=Msa0580800-mRNA-1
chr4_1 exon 86065799 86066002 86065799 ID=Msa0580800-mRNA-1:exon:31698;Parent=Msa0580800-mRNA-1
chr4_1 exon 86066695 86066952 86066695 ID=Msa0580800-mRNA-1:exon:31697;Parent=Msa0580800-mRNA-1
chr4_1 exon 86067437 86067534 86067437 ID=Msa0580800-mRNA-1:exon:31696;Parent=Msa0580800-mRNA-1
chr4_1 exon 86068742 86068781 86068742 ID=Msa0580800-mRNA-1:exon:31695;Parent=Msa0580800-mRNA-1
chr4_1 exon 86068914 86069083 86068914 ID=Msa0580800-mRNA-1:exon:31694;Parent=Msa0580800-mRNA-1
chr4_1 five_prime_UTR 86068914 86069083 86068914 ID=Msa0580800-mRNA-1:five_prime_utr;Parent=Msa0580800-mRNA-1
chr4_1 five_prime_UTR 86068742 86068781 86068742 ID=Msa0580800-mRNA-1:five_prime_utr;Parent=Msa0580800-mRNA-1
chr4_1 five_prime_UTR 86067521 86067534 86067521 ID=Msa0580800-mRNA-1:five_prime_utr;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86067437 86067520 86067437 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86066695 86066952 86066695 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86065799 86066002 86065799 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86064844 86064918 86064844 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86062599 86063700 86062599 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 CDS 86062131 86062162 86062131 ID=Msa0580800-mRNA-1:cds;Parent=Msa0580800-mRNA-1
chr4_1 three_prime_UTR 86061732 86062130 86061732 ID=Msa0580800-mRNA-1:three_prime_utr;Parent=Msa0580800-mRNA-1
Gene Sequence

>Msa0580800

ATGGGTAAATCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAGGCATCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCGGAAACTGGTTTAGCTTTAGAGCCAACCTCCAACACTATTGCCGTACATGTGGAAGACCTGGAGCTGGAGAATAAAGAAGCAGAAAATGTTTTACCTGGAGATCAAGAAATTGACACAGTGGGACCTGTTGATCAAGATGCACCACTTGATCCAGAGAAGATGAAGCTGGAGGAAGCAGCTACAAAAACACAGGCTGCTTTCAGGGGTTATTTGGCCCGGAGAGCATTTAGAGCCTTAAAAGGCATAATAAGGTTACAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGCTACTTTGTGCTGTATGTATGGAATTGTCAAATTACAAGCACTTGTTCGTGGACAAATAATTAGAAAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAATCTATTGAAGCTCCAGGATGCCAAACCTGTCAAGCCAATTGCTATATCTGGTAAAATTATGAAGCTGTCAGCAAACACTTTCACCCGTAAGCTTATTGCTTCATCAACTACAATTATGGCCCTGCGTTTGCAATATGTTTGTGGTGATCCAAATTCAGTCCTTAGTTGGTCTGAGCGCTGGTCAGCATGTCGGTTTTGGAAGCCAATTCCCCAACCCAAGAAAATCCGGGATACTAAGTCTCAGAAAAAGCAGGGTAATATTTCAACTGGAGACGCTCAGATGACCAAGTCTAAACGTACCCACAGGAAGCTTCCTACTGCAAATTTTGACCTAGCCCCAGCACAAGCAAACCCTGAAATTGAAAAACCAAAACGAAACGCAAGGAAATTTCCTAGCCAACCCTCAGATCCTTTGCTGGAAAATCCACAGATTGAGCTTGAGAAGGTTAAACGTAACTTGCGAAAGGTTCATAACCCAGTTGTTGAAGCTGCAGTTCCGTCAGAAGTTGAATCTGAGATTCCAAAGCCTCATTTGGAAAAGGAAACAGTTGCCTCAAGTGTTGGTGTTTCAGAACAAGGGGTCATTAGTTCCAATGAAATGGCCAGAAAGGAAGCAATGTTAACCAGTGAGCCAGAGATGGGAATTACTCCTAGTCCTAGAGATTTAGTTACTAAGGAGGTGTTTGACACTCCAAACAGTTATCAGGTGAATGTGGAATCAAAGCCTTTGACAGATATTACAAGTAAAGATAAAAACATTTCCGATGATGAAGTTAAAAACGAACCCAAAGATTTAGAAGAGACTGTTTGCAAAGATGAAAATTCTCACTTAACAAACGGAGATTTGAATCACAAGGAAGATCAAACAGGAAGTGAAAACCAGAAACCAACCCGAAAAACCTCAACTGGAGCTAAGCAGGAACGTGCAGAGAATGGTTTGCATAATAGTCCGACGATACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAATTGAGGGCTCAAGGATCACCAAAAGTCGTACAAGATGGAAGTGAGAAAAACAACAGTGCTCGGCGACAGTCCCTGCCATCTTCAACTAACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGACCAGTTCATTCAGGTGGTAAAGGGGGCCATAAAAGTGACAAAGCAGTATCTTCTTCTAGAGATGGAAATGGAAAGGTAGTTCAAGCAGAATGGAAGAGGTGA
Protein sequence

>Msa0580800

MGKSPGKWIKTVLFGKKASKSNIPRGREKLVNQKEGVVASKVSETGLALEPTSNTIAVHVEDLELENKEAENVLPGDQEIDTVGPVDQDAPLDPEKMKLEEAATKTQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGQIIRKSDVGFEIHEKCNLLKLQDAKPVKPIAISGKIMKLSANTFTRKLIASSTTIMALRLQYVCGDPNSVLSWSERWSACRFWKPIPQPKKIRDTKSQKKQGNISTGDAQMTKSKRTHRKLPTANFDLAPAQANPEIEKPKRNARKFPSQPSDPLLENPQIELEKVKRNLRKVHNPVVEAAVPSEVESEIPKPHLEKETVASSVGVSEQGVISSNEMARKEAMLTSEPEMGITPSPRDLVTKEVFDTPNSYQVNVESKPLTDITSKDKNISDDEVKNEPKDLEETVCKDENSHLTNGDLNHKEDQTGSENQKPTRKTSTGAKQERAENGLHNSPTIPSYMAATESAKAKLRAQGSPKVVQDGSEKNNSARRQSLPSSTNSKISSHSPRTQRPVHSGGKGGHKSDKAVSSSRDGNGKVVQAEWKR*