AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380500 MtrunA17_Chr4g0060381 96.575 584 20 0 1 584 1 584 0.0 1160
Msa1380500 MtrunA17_Chr5g0416161 40.081 247 125 6 93 335 112 339 4.12e-41 158
Msa1380500 MtrunA17_Chr5g0416161 49.107 112 55 1 475 584 614 725 2.51e-18 89.0
Msa1380500 MtrunA17_Chr7g0273951 44.000 100 49 2 99 198 105 197 1.27e-17 85.1
Msa1380500 MtrunA17_Chr1g0204901 60.000 65 26 0 100 164 136 200 3.10e-17 84.7
Msa1380500 MtrunA17_Chr8g0346021 61.905 63 24 0 102 164 129 191 4.49e-17 84.7
Msa1380500 MtrunA17_Chr8g0389781 60.000 60 24 0 102 161 128 187 2.77e-16 81.6
Msa1380500 MtrunA17_Chr1g0156121 37.143 140 82 3 100 237 124 259 4.21e-16 82.0
Msa1380500 MtrunA17_Chr6g0472551 53.731 67 31 0 101 167 118 184 5.62e-16 80.9
Msa1380500 MtrunA17_Chr7g0273861 52.941 85 33 4 96 175 120 202 9.05e-16 79.7
Msa1380500 MtrunA17_Chr8g0340761 55.385 65 29 0 102 166 128 192 9.34e-16 79.7
Msa1380500 MtrunA17_Chr1g0200161 33.721 172 82 6 100 243 141 308 3.63e-15 78.2
Msa1380500 MtrunA17_Chr4g0025441 38.462 156 75 6 5 151 4 147 3.76e-15 78.2
Msa1380500 MtrunA17_Chr4g0020671 37.615 109 63 1 55 158 51 159 1.02e-14 76.6
Msa1380500 MtrunA17_Chr1g0203711 55.738 61 27 0 100 160 115 175 1.32e-14 76.3
Msa1380500 MtrunA17_Chr3g0126901 61.111 54 21 0 98 151 110 163 1.33e-14 76.3
Msa1380500 MtrunA17_Chr6g0462191 37.640 178 86 6 91 244 98 274 2.28e-14 75.5
Msa1380500 MtrunA17_Chr2g0330921 53.846 65 30 0 102 166 99 163 2.66e-14 74.7
Msa1380500 MtrunA17_Chr8g0371131 56.667 60 26 0 102 161 73 132 2.70e-14 70.5
Msa1380500 MtrunA17_Chr1g0146931 62.963 54 20 0 98 151 120 173 3.44e-14 75.1
Msa1380500 MtrunA17_Chr1g0166431 60.377 53 21 0 100 152 117 169 1.02e-13 73.6
Msa1380500 MtrunA17_Chr4g0045641 46.032 63 34 0 102 164 148 210 1.38e-12 70.5
Msa1380500 MtrunA17_Chr1g0181581 49.231 65 33 0 100 164 116 180 2.05e-12 69.7
Msa1380500 MtrunA17_Chr2g0283321 27.513 189 110 5 102 266 65 250 8.63e-12 66.2
Msa1380500 MtrunA17_Chr3g0135851 31.522 184 92 6 91 243 82 262 1.65e-11 66.6
Msa1380500 MtrunA17_Chr4g0057321 49.180 61 31 0 96 156 84 144 1.94e-11 66.2
Msa1380500 MtrunA17_Chr7g0215371 50.000 58 29 0 100 157 19 76 5.77e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380500 AT1G74690.1 45.381 617 274 18 1 584 1 587 2.30e-130 394
Msa1380500 AT1G18840.1 42.623 610 286 22 1 584 1 572 1.19e-120 369
Msa1380500 AT1G18840.3 42.623 610 286 22 1 584 1 572 1.19e-120 369
Msa1380500 AT1G18840.2 42.623 610 286 22 1 584 1 572 1.19e-120 369
Msa1380500 AT1G14380.7 34.106 604 348 17 1 584 1 574 2.61e-83 271
Msa1380500 AT1G14380.6 33.703 632 341 19 1 584 1 602 1.14e-81 268
Msa1380500 AT1G14380.5 33.703 632 341 19 1 584 1 602 1.14e-81 268
Msa1380500 AT1G14380.2 33.703 632 341 19 1 584 1 602 1.14e-81 268
Msa1380500 AT2G02790.2 35.048 622 341 18 1 584 1 597 9.87e-73 244
Msa1380500 AT2G02790.3 35.048 622 341 18 1 584 1 597 9.87e-73 244
Msa1380500 AT2G02790.1 34.853 614 337 18 1 576 1 589 4.57e-69 235
Msa1380500 AT1G14380.1 31.387 685 348 24 1 584 1 664 3.77e-64 223
Msa1380500 AT1G14380.3 31.387 685 348 24 1 584 1 664 3.77e-64 223
Msa1380500 AT1G14380.4 31.387 685 348 24 1 584 1 664 3.77e-64 223
Msa1380500 AT1G19870.1 29.070 344 183 14 37 341 145 466 3.56e-20 95.5
Msa1380500 AT1G19870.2 28.409 264 141 9 107 341 39 283 9.31e-19 90.5
Msa1380500 AT4G14750.1 37.430 179 87 7 1 164 1 169 1.92e-18 88.2
Msa1380500 AT4G14750.3 37.430 179 87 7 1 164 60 228 3.95e-18 87.8
Msa1380500 AT4G14750.2 37.430 179 87 7 1 164 60 228 4.86e-18 87.4
Msa1380500 AT2G26180.1 32.234 273 137 8 1 243 1 255 1.10e-17 86.3
Msa1380500 AT1G72670.1 35.135 185 91 5 1 174 1 167 3.18e-17 84.7
Msa1380500 AT3G51380.1 55.882 68 30 0 94 161 31 98 3.74e-16 74.7
Msa1380500 AT1G17480.1 52.113 71 34 0 91 161 85 155 4.41e-16 80.9
Msa1380500 AT5G13460.1 60.000 60 24 0 102 161 113 172 4.70e-16 81.3
Msa1380500 AT3G16490.1 44.211 95 47 2 102 193 109 200 5.69e-16 80.5
Msa1380500 AT1G01110.2 57.353 68 29 0 102 169 123 190 6.30e-16 81.3
Msa1380500 AT4G00820.1 55.714 70 31 0 100 169 132 201 9.80e-16 80.9
Msa1380500 AT3G22190.3 51.389 72 30 1 80 151 73 139 1.79e-15 79.3
Msa1380500 AT3G22190.2 51.389 72 30 1 80 151 73 139 1.79e-15 79.3
Msa1380500 AT3G22190.4 51.389 72 30 1 80 151 73 139 1.79e-15 79.3
Msa1380500 AT3G22190.1 51.389 72 30 1 80 151 73 139 1.79e-15 79.3
Msa1380500 AT3G49260.1 52.308 65 31 0 100 164 120 184 3.74e-15 78.6
Msa1380500 AT3G49260.4 52.308 65 31 0 100 164 120 184 3.74e-15 78.6
Msa1380500 AT3G49260.2 52.308 65 31 0 100 164 120 184 3.74e-15 78.6
Msa1380500 AT3G49260.3 52.308 65 31 0 100 164 120 184 3.89e-15 78.6
Msa1380500 AT5G03040.1 31.053 190 100 6 1 167 1 182 5.96e-15 77.8
Msa1380500 AT5G03040.3 31.053 190 100 6 1 167 1 182 5.96e-15 77.8
Msa1380500 AT5G03040.2 31.053 190 100 6 1 167 1 182 5.96e-15 77.8
Msa1380500 AT3G52290.1 30.857 175 86 3 94 241 102 268 7.52e-15 77.4
Msa1380500 AT4G29150.1 50.000 74 37 0 88 161 119 192 2.05e-14 75.9
Msa1380500 AT5G07240.1 56.667 60 26 0 101 160 107 166 3.85e-14 75.1
Msa1380500 AT3G59690.2 46.479 71 38 0 93 163 162 232 4.78e-14 75.5
Msa1380500 AT3G59690.1 46.479 71 38 0 93 163 162 232 4.78e-14 75.5
Msa1380500 AT4G10640.1 42.056 107 60 1 49 155 51 155 5.04e-14 74.7
Msa1380500 AT5G07240.2 56.667 60 26 0 101 160 153 212 5.37e-14 75.1
Msa1380500 AT2G43680.4 46.032 63 34 0 102 164 324 386 7.02e-14 75.1
Msa1380500 AT2G43680.2 46.032 63 34 0 102 164 324 386 7.02e-14 75.1
Msa1380500 AT2G43680.3 46.032 63 34 0 102 164 324 386 7.02e-14 75.1
Msa1380500 AT2G43680.5 46.032 63 34 0 102 164 324 386 7.02e-14 75.1
Msa1380500 AT2G43680.1 46.032 63 34 0 102 164 325 387 7.22e-14 75.1
Msa1380500 AT1G51960.1 50.769 65 32 0 102 166 102 166 6.41e-13 70.9
Msa1380500 AT5G62070.1 60.377 53 21 0 102 154 119 171 6.87e-13 71.2
Msa1380500 AT4G23060.1 51.613 62 30 0 99 160 166 227 8.84e-13 71.2
Msa1380500 AT3G09710.1 27.899 276 153 9 6 243 5 272 2.97e-12 69.3
Msa1380500 AT3G09710.2 32.402 179 96 7 6 167 5 175 9.74e-12 67.8
Msa1380500 AT3G49380.1 41.758 91 50 1 70 157 77 167 1.50e-11 66.6

Find 164 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGCACAGGCTGCTTTC+AGG 0.155116 tig0020375:-11942 Msa1380500:CDS
AACAGTCTCTTCTAAATCTT+TGG 0.164446 tig0020375:+8152 None:intergenic
AAACAAACAGGACATAAATT+TGG 0.176777 tig0020375:+7084 None:intergenic
TGCTTCATCAACTACAATTA+TGG 0.198086 tig0020375:-8841 Msa1380500:CDS
GGCTGCTTTCAGGGGTTATT+TGG 0.216492 tig0020375:-11932 Msa1380500:intron
TCCTCTTGGTATATTTGATT+TGG 0.230375 tig0020375:+12681 None:intergenic
GAGCCTTAAAAGGCATAATA+AGG 0.247639 tig0020375:-11129 Msa1380500:CDS
ATTTCAGGGTTTGCTTGTGC+TGG 0.273773 tig0020375:+8600 None:intergenic
GACCAACTAAGGACTGAATT+TGG 0.278720 tig0020375:+8789 None:intergenic
GAGAGTGATTTGTACATTAT+AGG 0.281368 tig0020375:-7135 Msa1380500:three_prime_UTR
CTTCCATCTTGTACGACTTT+TGG 0.286258 tig0020375:+7922 None:intergenic
TGTTTATGTGTTATCTTTGA+TGG 0.296486 tig0020375:-7225 Msa1380500:three_prime_UTR
GCTTCCAAGGTTTCGGAAAC+TGG 0.304932 tig0020375:-12138 Msa1380500:CDS
GCTGGTCAGCATGTCGGTTT+TGG 0.307481 tig0020375:-8761 Msa1380500:CDS
AGTTTATCTTCGCTGCATTT+TGG 0.322117 tig0020375:-7163 Msa1380500:three_prime_UTR
TCCTCCAGCTTCATCTTCTC+TGG 0.324193 tig0020375:+11973 None:intergenic
TCTCTCACTGTCTTCTTCTA+TGG 0.327287 tig0020375:-14151 Msa1380500:intron
GTCAAGCCAATTGCTATATC+TGG 0.328979 tig0020375:-10052 Msa1380500:CDS
AATTTCCTTGCGTTTCGTTT+TGG 0.330220 tig0020375:+8570 None:intergenic
AGAGCATTTAGAGCCTTAAA+AGG 0.332450 tig0020375:-11139 Msa1380500:CDS
CATGTTACCATAAAATATTT+AGG 0.336581 tig0020375:+6948 None:intergenic
TGAGATTCCAAAGCCTCATT+TGG 0.338407 tig0020375:-8424 Msa1380500:CDS
TGACACTCCAAACAGTTATC+AGG 0.339226 tig0020375:-8253 Msa1380500:CDS
AGTTGTTGCTTCCAAGGTTT+CGG 0.342846 tig0020375:-12145 Msa1380500:CDS
TGGATCAAAACTGTACTGTT+TGG 0.347377 tig0020375:-12715 Msa1380500:CDS
GGTTTGCTTGTGCTGGGGCT+AGG 0.348635 tig0020375:+8607 None:intergenic
TGGGTAAATCACCAGGAAAA+TGG 0.351546 tig0020375:-12735 Msa1380500:CDS
TTTCAGGGTTTGCTTGTGCT+GGG 0.354870 tig0020375:+8601 None:intergenic
GTTAAGATCATACACACTTC+AGG 0.363140 tig0020375:+7019 None:intergenic
GAAAAGCTGAGATAATTTCT+TGG 0.368062 tig0020375:+14265 None:intergenic
TCCGACGATACCAAGTTATA+TGG 0.373995 tig0020375:-7989 Msa1380500:CDS
TTCCTTTCTGACCATTTCAT+TGG 0.381888 tig0020375:+8347 None:intergenic
AAAAGCTGAGATAATTTCTT+GGG 0.387630 tig0020375:+14266 None:intergenic
GGAACTGCAGCTTCAACAAC+TGG 0.388236 tig0020375:+8462 None:intergenic
TCCTAGAGATTTAGTTACTA+AGG 0.389207 tig0020375:-8283 Msa1380500:CDS
TTCCCCAACCCAAGAAAATC+CGG 0.393030 tig0020375:-8731 Msa1380500:CDS
AACTGTACTGTTTGGGAAGA+AGG 0.396388 tig0020375:-12707 Msa1380500:CDS
GCTACTTTGTGCTGTATGTA+TGG 0.397544 tig0020375:-11061 Msa1380500:CDS
ACAGTCTCTTCTAAATCTTT+GGG 0.399625 tig0020375:+8153 None:intergenic
AACAAACAGGACATAAATTT+GGG 0.400409 tig0020375:+7085 None:intergenic
GGATCAAAACTGTACTGTTT+GGG 0.400627 tig0020375:-12714 Msa1380500:CDS
AGCAATTGGCTTGACAGGTT+TGG 0.401611 tig0020375:+10060 None:intergenic
GATATAGCAATTGGCTTGAC+AGG 0.403504 tig0020375:+10055 None:intergenic
TGCTGTTAGTTGAAGATGGC+AGG 0.407732 tig0020375:+7869 None:intergenic
CTTCTTTATTCTCCAGCTCC+AGG 0.410650 tig0020375:+12067 None:intergenic
AGTGGTGCATCTTGATCAAC+AGG 0.413486 tig0020375:+12000 None:intergenic
ACATTCACCTGATAACTGTT+TGG 0.414315 tig0020375:+8246 None:intergenic
ACACAGAGACCAGTTCATTC+AGG 0.415046 tig0020375:-7823 Msa1380500:CDS
CAGTTCATTCAGGTGGTAAA+GGG 0.417415 tig0020375:-7813 Msa1380500:CDS
AAGCAGGGTAATATTTCAAC+TGG 0.419215 tig0020375:-8690 Msa1380500:CDS
AAAAGCACAGGCTGCTTTCA+GGG 0.427784 tig0020375:-11941 Msa1380500:CDS
CCAACCCTCAGATCCTTTGC+TGG 0.428090 tig0020375:-8541 Msa1380500:CDS
CCAGTTCATTCAGGTGGTAA+AGG 0.435174 tig0020375:-7814 Msa1380500:CDS
GGTCATTAGTTCCAATGAAA+TGG 0.435488 tig0020375:-8358 Msa1380500:CDS
CTCTCTGTCACTGTGCTAGC+TGG 0.436068 tig0020375:+14222 None:intergenic
AGATTTACCTCTCTTCCTCT+TGG 0.436650 tig0020375:+12667 None:intergenic
TGCTGAATTGACCGAACTAT+AGG 0.441506 tig0020375:-7198 Msa1380500:three_prime_UTR
CTGCGTTTGCAATATGTTTG+TGG 0.443685 tig0020375:-8816 Msa1380500:CDS
TTAGAAGCTTGTTAATCAAA+AGG 0.445914 tig0020375:-12172 Msa1380500:intron
TCCAAAGCCTCATTTGGAAA+AGG 0.453121 tig0020375:-8418 Msa1380500:CDS
TTAAGGCTCTAAATGCTCTC+CGG 0.456342 tig0020375:+11143 None:intergenic
GGAAGGAGTTGTTGCTTCCA+AGG 0.457830 tig0020375:-12151 Msa1380500:CDS
GTGTCAATTTCTTGATCTCC+AGG 0.458269 tig0020375:+12030 None:intergenic
TCCTTAGTTGGTCTGAGCGC+TGG 0.459646 tig0020375:-8779 Msa1380500:CDS
ATCCAAATTCAGTCCTTAGT+TGG 0.459833 tig0020375:-8791 Msa1380500:CDS
TGTAATGTAGGTTACCTTAC+GGG 0.461722 tig0020375:+9997 None:intergenic
ATCTTAACACGTACCTTCCT+AGG 0.464233 tig0020375:-7004 Msa1380500:three_prime_UTR
AATAATGCTCGAAAACAAAC+AGG 0.471096 tig0020375:+7072 None:intergenic
ATAATTAGAAAGTCTGATGT+TGG 0.475015 tig0020375:-11004 Msa1380500:CDS
AGAATGGAAGAGGTGATTTG+AGG 0.478240 tig0020375:-7292 Msa1380500:exon
ACCAGCGCTCAGACCAACTA+AGG 0.486273 tig0020375:+8778 None:intergenic
AACCTCAACTGGAGCTAAGC+AGG 0.486487 tig0020375:-8040 Msa1380500:CDS
CCTGTGGGTACGTTTAGACT+TGG 0.491203 tig0020375:+8653 None:intergenic
CTAGGAGTAATTCCCATCTC+TGG 0.493836 tig0020375:+8306 None:intergenic
TCAGTTGCTGCCATATAACT+TGG 0.495488 tig0020375:+7979 None:intergenic
CAATTTCTTCATGTCAACTC+CGG 0.501578 tig0020375:+7258 None:intergenic
ACAGATCTTGGTATCACAAT+GGG 0.501778 tig0020375:-12754 Msa1380500:intron
AATTCCCATCTCTGGCTCAC+TGG 0.502421 tig0020375:+8314 None:intergenic
ATCTGCCAAGGCAAAATTGA+GGG 0.504867 tig0020375:-7956 Msa1380500:CDS
GAAAATTCTCACTTAACAAA+CGG 0.505003 tig0020375:-8120 Msa1380500:CDS
CCTTTACCACCTGAATGAAC+TGG 0.505962 tig0020375:+7814 None:intergenic
AGCACTTATTCGTGGGCACT+TGG 0.506188 tig0020375:-11101 Msa1380500:CDS
AAATTACAAGCACTTGTTCG+TGG 0.506547 tig0020375:-11031 Msa1380500:CDS
AAGCAGGAACGTGCAGAGAA+TGG 0.508732 tig0020375:-8024 Msa1380500:CDS
TGAACTGGTCTCTGTGTCCT+AGG 0.511569 tig0020375:+7829 None:intergenic
GCCATATAACTTGGTATCGT+CGG 0.514618 tig0020375:+7988 None:intergenic
AATCACAAGGAAGATCAAAC+AGG 0.515319 tig0020375:-8090 Msa1380500:CDS
CTCCAGGTCTTCCACATGTA+CGG 0.516788 tig0020375:+12083 None:intergenic
TTCCAATGAAATGGTCAGAA+AGG 0.520689 tig0020375:-8349 Msa1380500:CDS
GAAAGGTAGTTCAAGCAGAA+TGG 0.521415 tig0020375:-7308 Msa1380500:CDS
TAAGGCTCTAAATGCTCTCC+GGG 0.522087 tig0020375:+11144 None:intergenic
GATCAAACACACCTATAGTT+CGG 0.526581 tig0020375:+7187 None:intergenic
TCTTCTTCTAGAGATGGAAA+TGG 0.527477 tig0020375:-7766 Msa1380500:intron
TTCATCTTCTCTGGATCAAG+TGG 0.527575 tig0020375:+11982 None:intergenic
TTACTTGTAATATCTGTCAA+AGG 0.531696 tig0020375:+8213 None:intergenic
TAGTTCAAGCAGAATGGAAG+AGG 0.532628 tig0020375:-7302 Msa1380500:CDS
TGCCGTACATGTGGAAGACC+TGG 0.534296 tig0020375:-12085 Msa1380500:CDS
CCAGCAAAGGATCTGAGGGT+TGG 0.534674 tig0020375:+8541 None:intergenic
CACAAACATATTGCAAACGC+AGG 0.535386 tig0020375:+8817 None:intergenic
TTCAGGGTTTGCTTGTGCTG+GGG 0.535737 tig0020375:+8602 None:intergenic
GCAGTATCTTCTTCTAGAGA+TGG 0.536198 tig0020375:-7772 Msa1380500:CDS
TTAAGATCATACACACTTCA+GGG 0.537575 tig0020375:+7020 None:intergenic
ATGTACGGCAATAGTGTTGG+AGG 0.539466 tig0020375:+12098 None:intergenic
AAGCTTGTTAATCAAAAGGA+AGG 0.541536 tig0020375:-12168 Msa1380500:CDS
GTGCAATCTATTGAAGCTCC+AGG 0.542766 tig0020375:-10963 Msa1380500:intron
GTTAACCAGTGAGCCAGAGA+TGG 0.546318 tig0020375:-8319 Msa1380500:CDS
AGTGTTGGTGTTTCAGAACA+AGG 0.547511 tig0020375:-8381 Msa1380500:CDS
AAAGGATCTGAGGGTTGGCT+AGG 0.547702 tig0020375:+8546 None:intergenic
ATCTCAGATTCAACTTCTGA+CGG 0.550258 tig0020375:+8441 None:intergenic
TAAACCAGTTTCCGAAACCT+TGG 0.551513 tig0020375:+12134 None:intergenic
TGATCCAGAGAAGATGAAGC+TGG 0.553280 tig0020375:-11977 Msa1380500:CDS
AATCTGCCAAGGCAAAATTG+AGG 0.553435 tig0020375:-7957 Msa1380500:CDS
CACATGTACGGCAATAGTGT+TGG 0.554159 tig0020375:+12095 None:intergenic
AGGTTACAAGCACTTATTCG+TGG 0.554181 tig0020375:-11109 Msa1380500:CDS
ACCTTCTCAAGCTCAATCTG+TGG 0.557585 tig0020375:+8513 None:intergenic
TTCCTGCTTAGCTCCAGTTG+AGG 0.558184 tig0020375:+8038 None:intergenic
CTGAGCGCTGGTCAGCATGT+CGG 0.559916 tig0020375:-8767 Msa1380500:CDS
AAGGCAAAATTGAGGGCTCA+AGG 0.562761 tig0020375:-7949 Msa1380500:CDS
AGCAAACACTTTCACCCGTA+AGG 0.563747 tig0020375:-10011 Msa1380500:intron
GTAACTAAATCTCTAGGACT+AGG 0.566188 tig0020375:+8288 None:intergenic
TCACCAAAAGTCGTACAAGA+TGG 0.566333 tig0020375:-7925 Msa1380500:CDS
GAAACAGTTGCCTCAAGTGT+TGG 0.566616 tig0020375:-8396 Msa1380500:CDS
TTCTGAAACACCAACACTTG+AGG 0.567359 tig0020375:+8386 None:intergenic
ACATGTGGAAGACCTGGAGC+TGG 0.572908 tig0020375:-12079 Msa1380500:CDS
TTAACCAGTGAGCCAGAGAT+GGG 0.573847 tig0020375:-8318 Msa1380500:CDS
TTGCAGTAGGAAGCTTCCTG+TGG 0.578038 tig0020375:+8637 None:intergenic
GAACAACTTCCACATTGGTA+AGG 0.580152 tig0020375:-13978 Msa1380500:intron
TCCACAGATTGAGCTTGAGA+AGG 0.582817 tig0020375:-8514 Msa1380500:CDS
GTGTTGGTGTTTCAGAACAA+GGG 0.584151 tig0020375:-8380 Msa1380500:CDS
TCCCCAACCCAAGAAAATCC+GGG 0.584450 tig0020375:-8730 Msa1380500:CDS
ATCACAATGGGTAAATCACC+AGG 0.589006 tig0020375:-12742 Msa1380500:exon
GGAAGCAGCTACAAAAGCAC+AGG 0.590707 tig0020375:-11953 Msa1380500:CDS
GCTGTTAGTTGAAGATGGCA+GGG 0.593744 tig0020375:+7870 None:intergenic
GGTTAAACGTAACTTGCGAA+AGG 0.597673 tig0020375:-8493 Msa1380500:CDS
AAACAGTTATCAGGTGAATG+TGG 0.598436 tig0020375:-8244 Msa1380500:CDS
GGTTACAAGCACTTATTCGT+GGG 0.599006 tig0020375:-11108 Msa1380500:CDS
GAGCTGAACAACTTCCACAT+TGG 0.601144 tig0020375:-13983 Msa1380500:five_prime_UTR
AAATATACCAAGAGGAAGAG+AGG 0.602057 tig0020375:-12674 Msa1380500:intron
ATGTGTAAGTTAGTCACTCG+TGG 0.602462 tig0020375:+14296 None:intergenic
TACAGATCTTGGTATCACAA+TGG 0.603086 tig0020375:-12755 Msa1380500:intron
CAACACTATTGCCGTACATG+TGG 0.604171 tig0020375:-12094 Msa1380500:CDS
TCCTTAGTAACTAAATCTCT+AGG 0.610351 tig0020375:+8282 None:intergenic
TAGAGATTTAGTTACTAAGG+AGG 0.612038 tig0020375:-8280 Msa1380500:CDS
TGTTGGTGTTTCAGAACAAG+GGG 0.614686 tig0020375:-8379 Msa1380500:CDS
AAAGCACAGGCTGCTTTCAG+GGG 0.616450 tig0020375:-11940 Msa1380500:CDS
GCTAGGTCAAAATTTGCAGT+AGG 0.616714 tig0020375:+8624 None:intergenic
TGCAGTAGGAAGCTTCCTGT+GGG 0.618293 tig0020375:+8638 None:intergenic
ACGGCAATAGTGTTGGAGGA+TGG 0.623994 tig0020375:+12102 None:intergenic
GGCAGCAACTGAATCTGCCA+AGG 0.626694 tig0020375:-7968 Msa1380500:CDS
GATCAAGAAATTGACACAGT+GGG 0.629104 tig0020375:-12024 Msa1380500:CDS
GTACTTTGTAACACCTAGGA+AGG 0.629818 tig0020375:+6991 None:intergenic
AGTTCATTCAGGTGGTAAAG+GGG 0.630964 tig0020375:-7812 Msa1380500:CDS
TCCAAATCAAATATACCAAG+AGG 0.633885 tig0020375:-12682 Msa1380500:CDS
ACAAACATATTGCAAACGCA+GGG 0.640060 tig0020375:+8818 None:intergenic
AAATCAGTTCGCATTCACCT+AGG 0.645810 tig0020375:-7846 Msa1380500:CDS
TAACAATTACCTTACCAATG+TGG 0.653378 tig0020375:+13969 None:intergenic
CCAAGTCTAAACGTACCCAC+AGG 0.666876 tig0020375:-8653 Msa1380500:CDS
GAACTGCAGCTTCAACAACT+GGG 0.667414 tig0020375:+8463 None:intergenic
AAACGGAGATTTGAATCACA+AGG 0.671822 tig0020375:-8103 Msa1380500:CDS
GTTCATTCAGGTGGTAAAGG+GGG 0.677817 tig0020375:-7811 Msa1380500:CDS
CAGAGACCAGTTCATTCAGG+TGG 0.680292 tig0020375:-7820 Msa1380500:CDS
TCCAGAGAAGATGAAGCTGG+AGG 0.681945 tig0020375:-11974 Msa1380500:CDS
ATAAGTACTTTGTAACACCT+AGG 0.696236 tig0020375:+6987 None:intergenic
AGATCAAGAAATTGACACAG+TGG 0.734130 tig0020375:-12025 Msa1380500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAATAAAAAAAAAA+GGG + tig0020375:10485-10504 None:intergenic 0.0%
!! TAAATTATAATAAAAAAAAA+AGG + tig0020375:10486-10505 None:intergenic 0.0%
!! ATAAAAACATTTAATTAAGT+TGG + tig0020375:8139-8158 None:intergenic 10.0%
!! ATTATAATAAAAAAAAAAGG+GGG + tig0020375:10483-10502 None:intergenic 10.0%
!! TTAAAAAGGAAATAATATGA+TGG - tig0020375:7600-7619 Msa1380500:intron 15.0%
!! GATCAAGTAATTATATTTAT+AGG + tig0020375:7831-7850 None:intergenic 15.0%
!!! ATAATTTTTTTCTTTTGACA+AGG - tig0020375:7880-7899 Msa1380500:CDS 15.0%
!!! TATAATATATGCATTTTTTG+AGG - tig0020375:7912-7931 Msa1380500:CDS 15.0%
!!! ATAATATATGCATTTTTTGA+GGG - tig0020375:7913-7932 Msa1380500:CDS 15.0%
!! GAAATAAAAATAATAATCCT+AGG - tig0020375:8387-8406 Msa1380500:CDS 15.0%
!! TTATTATCGAATTGAAATTA+AGG + tig0020375:9617-9636 None:intergenic 15.0%
!!! TCTTAATTTGAAATTGATTT+TGG - tig0020375:9645-9664 Msa1380500:intron 15.0%
!!! CTTAATTTGAAATTGATTTT+GGG - tig0020375:9646-9665 Msa1380500:intron 15.0%
!!! ATTTATTGGCATTATTTTTT+TGG - tig0020375:9954-9973 Msa1380500:intron 15.0%
!! ATCTTTAATAGAACAATTTA+CGG + tig0020375:10652-10671 None:intergenic 15.0%
!!! TTTTAATCTTATTAAGAAGT+TGG - tig0020375:10842-10861 Msa1380500:intron 15.0%
!! TATTAAATACACAAAAGATA+CGG + tig0020375:11412-11431 None:intergenic 15.0%
!! ACAAATCTAAACAAATTACA+CGG + tig0020375:7434-7453 None:intergenic 20.0%
!!! TATTTCCTTTTTAACATGAT+TGG + tig0020375:7594-7613 None:intergenic 20.0%
!!! ATAATATGATGGTGTTTAAT+TGG - tig0020375:7611-7630 Msa1380500:intron 20.0%
!! TAAGATCAAAAGTAAGTATA+GGG + tig0020375:7773-7792 None:intergenic 20.0%
!! CGAATAAAATTTAAGAATTG+TGG + tig0020375:8802-8821 None:intergenic 20.0%
!! AAAATATAGTAAAAGACATC+AGG + tig0020375:9004-9023 None:intergenic 20.0%
!!! GAATTTTTAACTATAAACCA+TGG - tig0020375:9358-9377 Msa1380500:intron 20.0%
!!! GAATTTTTAACTATAAACCA+TGG - tig0020375:9358-9377 Msa1380500:intron 20.0%
!! AGACAAACTATAAAAATGTA+GGG + tig0020375:9586-9605 None:intergenic 20.0%
!! AAGACAAACTATAAAAATGT+AGG + tig0020375:9587-9606 None:intergenic 20.0%
!! AATGCCAATAAATTAAAAAC+TGG + tig0020375:9947-9966 None:intergenic 20.0%
!! ATTATAATGTAGAGAGAAAA+TGG + tig0020375:10277-10296 None:intergenic 20.0%
!! ACATTATAATTTATTTGTCG+AGG - tig0020375:10287-10306 Msa1380500:intron 20.0%
!! CATTATAATTTATTTGTCGA+GGG - tig0020375:10288-10307 Msa1380500:intron 20.0%
!! ATTATAATTTATTTGTCGAG+GGG - tig0020375:10289-10308 Msa1380500:intron 20.0%
!! TCTTTAATAGAACAATTTAC+GGG + tig0020375:10651-10670 None:intergenic 20.0%
!!! AGATTTTTTTTTTCTTTCTG+AGG - tig0020375:10898-10917 Msa1380500:intron 20.0%
!!! GATTTTTTTTTTCTTTCTGA+GGG - tig0020375:10899-10918 Msa1380500:intron 20.0%
!! ACGAATAATATATAGATCTA+AGG + tig0020375:11465-11484 None:intergenic 20.0%
!! TTAGATCTATATATTATTCG+TGG - tig0020375:11464-11483 Msa1380500:intron 20.0%
!!! TTTTTCATCTCTTCATATAT+TGG - tig0020375:11687-11706 Msa1380500:intron 20.0%
!! AATAATTACGTGTATAATCT+TGG + tig0020375:11802-11821 None:intergenic 20.0%
!!! ATATTTTCAAAGCACTTTTT+TGG + tig0020375:13493-13512 None:intergenic 20.0%
!! ACTACATTCAAATAACAATA+CGG - tig0020375:13681-13700 Msa1380500:intron 20.0%
!!! TATTCTATCAAGTTGTTTTA+CGG + tig0020375:13720-13739 None:intergenic 20.0%
!!! ATTTCGACCTAAATATTTTA+TGG - tig0020375:14244-14263 Msa1380500:five_prime_UTR 20.0%
!! CATGTTACCATAAAATATTT+AGG + tig0020375:14254-14273 None:intergenic 20.0%
!!! GATTTCTTCATATTTGTTTT+AGG - tig0020375:14289-14308 Msa1380500:five_prime_UTR 20.0%
! AAAAGCTGAGATAATTTCTT+GGG + tig0020375:6936-6955 None:intergenic 25.0%
! GAAGAGAAATATATAAAGTG+AGG + tig0020375:7113-7132 None:intergenic 25.0%
! AAGTCTATAAGCTGATTATT+TGG - tig0020375:7167-7186 Msa1380500:three_prime_UTR 25.0%
! AATATAAATTATGCCTGTTC+TGG - tig0020375:7726-7745 Msa1380500:intron 25.0%
! CTAAGATCAAAAGTAAGTAT+AGG + tig0020375:7774-7793 None:intergenic 25.0%
! TGAGCTATGAAAATAATTTG+AGG + tig0020375:7993-8012 None:intergenic 25.0%
! AATTCTTAAATCATGCAACA+TGG + tig0020375:8320-8339 None:intergenic 25.0%
!! TAATTTTGCCTTAACTATCA+TGG + tig0020375:8564-8583 None:intergenic 25.0%
! CATTCAATAAATTATGCATG+TGG + tig0020375:8607-8626 None:intergenic 25.0%
! ATCCATTGAAGTTACATTAT+TGG - tig0020375:8638-8657 Msa1380500:CDS 25.0%
!!! CGTTTTGGTAAGAATTTAAA+GGG + tig0020375:8703-8722 None:intergenic 25.0%
! CCTTTAAATTCTTACCAAAA+CGG - tig0020375:8701-8720 Msa1380500:CDS 25.0%
! TCGTTAACTTCATTTACAAA+CGG - tig0020375:8844-8863 Msa1380500:CDS 25.0%
!!! TTATTGAAAAGTATCACTGT+TGG - tig0020375:8923-8942 Msa1380500:intron 25.0%
!!! TTAGAAGCTTGTTAATCAAA+AGG - tig0020375:9027-9046 Msa1380500:intron 25.0%
!! GTTTTATAGATATTTTCCGA+TGG - tig0020375:9303-9322 Msa1380500:intron 25.0%
!! TCATAATTTTGCAGACTAAA+AGG + tig0020375:9340-9359 None:intergenic 25.0%
! GACAAACTATAAAAATGTAG+GGG + tig0020375:9585-9604 None:intergenic 25.0%
! AAATATGTCGATGAAAGAAT+TGG - tig0020375:9913-9932 Msa1380500:intron 25.0%
!!! TGGACCAGTTTTTAATTTAT+TGG - tig0020375:9940-9959 Msa1380500:intron 25.0%
!!! TATTGGCATTATTTTTTTGG+TGG - tig0020375:9957-9976 Msa1380500:intron 25.0%
!! TAACCTTATTATGCCTTTTA+AGG + tig0020375:10076-10095 None:intergenic 25.0%
! ATAATTAGAAAGTCTGATGT+TGG - tig0020375:10195-10214 Msa1380500:intron 25.0%
!!! TTTAGCTCTAATTTCAGTTT+GGG + tig0020375:10597-10616 None:intergenic 25.0%
!!! ATTTAGCTCTAATTTCAGTT+TGG + tig0020375:10598-10617 None:intergenic 25.0%
! TTAAAGATCATAATTCTTGC+TGG - tig0020375:10664-10683 Msa1380500:intron 25.0%
! TAAAGATCATAATTCTTGCT+GGG - tig0020375:10665-10684 Msa1380500:intron 25.0%
!! ATTTGCTACAACTAGAATTA+TGG - tig0020375:10797-10816 Msa1380500:intron 25.0%
!! AAATTCTTATGAGTGTCTTT+TGG - tig0020375:10971-10990 Msa1380500:CDS 25.0%
!! ATTTTACCAGATATAGCAAT+TGG + tig0020375:11156-11175 None:intergenic 25.0%
!! CTCTGTATTGATAATTGATA+TGG - tig0020375:11530-11549 Msa1380500:intron 25.0%
!! TGTATTGATAATTGATATGG+TGG - tig0020375:11533-11552 Msa1380500:intron 25.0%
! CACATTCCTATTATTTCAAA+CGG + tig0020375:11615-11634 None:intergenic 25.0%
!!! TGTCATGTCATATTTTAGTT+TGG - tig0020375:12074-12093 Msa1380500:CDS 25.0%
! AATCTAATTGATGTGAAAAC+CGG + tig0020375:12116-12135 None:intergenic 25.0%
!!! GTTTTGGTTTTTCAATTTCA+GGG + tig0020375:12616-12635 None:intergenic 25.0%
! TTACTTGTAATATCTGTCAA+AGG + tig0020375:12989-13008 None:intergenic 25.0%
!!! TTCGTTTTTAACTTCATCAT+CGG + tig0020375:13026-13045 None:intergenic 25.0%
! GAAAATTCTCACTTAACAAA+CGG - tig0020375:13079-13098 Msa1380500:intron 25.0%
!!! GTCATTTTTACGTGATATTA+TGG + tig0020375:13539-13558 None:intergenic 25.0%
! CAGTAAAAATATCAACTTAG+TGG - tig0020375:13563-13582 Msa1380500:intron 25.0%
! TTTGTCATACTTATGAAACA+AGG + tig0020375:13593-13612 None:intergenic 25.0%
! ATACATATTGTTTAGAAAGG+AGG + tig0020375:13621-13640 None:intergenic 25.0%
! CTCATACATATTGTTTAGAA+AGG + tig0020375:13624-13643 None:intergenic 25.0%
! AAATCCATGTTTGTTTATTC+TGG - tig0020375:13803-13822 Msa1380500:intron 25.0%
! TGTTTATGTGTTATCTTTGA+TGG - tig0020375:13974-13993 Msa1380500:intron 25.0%
! AACAAACAGGACATAAATTT+GGG + tig0020375:14117-14136 None:intergenic 25.0%
! AAACAAACAGGACATAAATT+TGG + tig0020375:14118-14137 None:intergenic 25.0%
! AGGGAAAAAAACAAACAATA+TGG + tig0020375:14163-14182 None:intergenic 25.0%
GAAAAGCTGAGATAATTTCT+TGG + tig0020375:6937-6956 None:intergenic 30.0%
! CTAAAGCTGCATAAATTTTG+TGG + tig0020375:7020-7039 None:intergenic 30.0%
TAACAATTACCTTACCAATG+TGG + tig0020375:7233-7252 None:intergenic 30.0%
! CATGAATCAGTGTTTGAAAT+TGG + tig0020375:7284-7303 None:intergenic 30.0%
!! CAATTTCAAACACTGATTCA+TGG - tig0020375:7282-7301 Msa1380500:exon 30.0%
GTGTAAGCTACTATTATTGT+CGG - tig0020375:7520-7539 Msa1380500:intron 30.0%
! TAAGTTGAAGTTGAAGTTGT+AGG + tig0020375:8090-8109 None:intergenic 30.0%
! TTTTTGCACTCGTATTTTCA+TGG - tig0020375:8112-8131 Msa1380500:CDS 30.0%
CAAATTCAGTCAACTTAAGT+TGG + tig0020375:8280-8299 None:intergenic 30.0%
!! ACTTAAGTTGACTGAATTTG+CGG - tig0020375:8280-8299 Msa1380500:CDS 30.0%
CAAGATCTGTAACAGAAAAA+AGG + tig0020375:8435-8454 None:intergenic 30.0%
!!! CTTTTTTCTGTTACAGATCT+TGG - tig0020375:8433-8452 Msa1380500:CDS 30.0%
TCCAAATCAAATATACCAAG+AGG - tig0020375:8517-8536 Msa1380500:CDS 30.0%
TCCTCTTGGTATATTTGATT+TGG + tig0020375:8521-8540 None:intergenic 30.0%
TGTGGTTTAATAATGAACAG+AGG + tig0020375:8589-8608 None:intergenic 30.0%
TGTAACTTCAATGGATGTTT+AGG + tig0020375:8634-8653 None:intergenic 30.0%
CACCAATAATGTAACTTCAA+TGG + tig0020375:8643-8662 None:intergenic 30.0%
GTAAGAATTTAAAGGGTGAA+CGG + tig0020375:8696-8715 None:intergenic 30.0%
!! CCGTTTTGGTAAGAATTTAA+AGG + tig0020375:8704-8723 None:intergenic 30.0%
! TTCGATACTTTTACACTTCA+TGG - tig0020375:8818-8837 Msa1380500:CDS 30.0%
TGAGAGTAATTTGATATGAC+CGG - tig0020375:8968-8987 Msa1380500:intron 30.0%
!! AAGCTTGTTAATCAAAAGGA+AGG - tig0020375:9031-9050 Msa1380500:intron 30.0%
CACTTCAAAATATGTTTCCA+TGG + tig0020375:9378-9397 None:intergenic 30.0%
CACTTCAAAATATGTTTCCA+TGG + tig0020375:9378-9397 None:intergenic 30.0%
TCTCTATTTAGAGAACATGA+AGG + tig0020375:9719-9738 None:intergenic 30.0%
AGAGACATTTGCATTAGTTA+AGG + tig0020375:10027-10046 None:intergenic 30.0%
AATGCAAATGTCTCTATTGA+AGG - tig0020375:10032-10051 Msa1380500:CDS 30.0%
TGGATTTGGAAATAATAACC+TGG + tig0020375:10257-10276 None:intergenic 30.0%
! ATGTAGAGAGAAAATGGATT+TGG + tig0020375:10271-10290 None:intergenic 30.0%
! AAATTCTTCTGATTAGTCCA+TGG - tig0020375:10523-10542 Msa1380500:intron 30.0%
! AATTCTTCTGATTAGTCCAT+GGG - tig0020375:10524-10543 Msa1380500:intron 30.0%
ATAGAACAATTTACGGGATA+AGG + tig0020375:10645-10664 None:intergenic 30.0%
!! TCCTTGCTGTTCAAATAAAT+GGG - tig0020375:10761-10780 Msa1380500:intron 30.0%
CTTATTGTTAAAGACAAGCA+TGG - tig0020375:10924-10943 Msa1380500:intron 30.0%
AACAAGTCAGTGATAAGAAA+GGG - tig0020375:11035-11054 Msa1380500:CDS 30.0%
ACACATATATGGTGTAATGT+AGG + tig0020375:11217-11236 None:intergenic 30.0%
GCATAGTTATCACACATATA+TGG + tig0020375:11228-11247 None:intergenic 30.0%
! ATTGATAATTGATATGGTGG+AGG - tig0020375:11536-11555 Msa1380500:intron 30.0%
! TTGATAATTGATATGGTGGA+GGG - tig0020375:11537-11556 Msa1380500:intron 30.0%
GGAGAAATTATAGGAATGTA+GGG - tig0020375:11558-11577 Msa1380500:intron 30.0%
GAGAAATTATAGGAATGTAG+GGG - tig0020375:11559-11578 Msa1380500:intron 30.0%
AGAAATTATAGGAATGTAGG+GGG - tig0020375:11560-11579 Msa1380500:intron 30.0%
TTCCTATTATTTCAAACGGT+GGG + tig0020375:11611-11630 None:intergenic 30.0%
ATTCCTATTATTTCAAACGG+TGG + tig0020375:11612-11631 None:intergenic 30.0%
! CGTTTGAAATAATAGGAATG+TGG - tig0020375:11613-11632 Msa1380500:intron 30.0%
ATAATAGGAATGTGGTTGTT+AGG - tig0020375:11621-11640 Msa1380500:intron 30.0%
TGATTATTGACACTATTCAC+AGG - tig0020375:11901-11920 Msa1380500:intron 30.0%
TAACTGGGTTTAATTCACAT+GGG - tig0020375:11929-11948 Msa1380500:intron 30.0%
!! TCCATTAATTTGTTCTGAGT+GGG - tig0020375:12029-12048 Msa1380500:CDS 30.0%
GACATGACATAACCAAATAA+TGG + tig0020375:12063-12082 None:intergenic 30.0%
TGGTTAAATCCAAAAAAACC+CGG - tig0020375:12094-12113 Msa1380500:CDS 30.0%
ATCTAATTGATGTGAAAACC+GGG + tig0020375:12115-12134 None:intergenic 30.0%
!! ATCTTTGAAGTGAGAAAGTA+AGG - tig0020375:12152-12171 Msa1380500:CDS 30.0%
CATTCAACTCTATAAAAACC+CGG - tig0020375:12191-12210 Msa1380500:intron 30.0%
AGTCTAATTGATGTGAAAAC+CGG + tig0020375:12213-12232 None:intergenic 30.0%
TGCTTCATCAACTACAATTA+TGG - tig0020375:12358-12377 Msa1380500:intron 30.0%
!!! CGTTTTGGTTTTTCAATTTC+AGG + tig0020375:12617-12636 None:intergenic 30.0%
TCCTAGAGATTTAGTTACTA+AGG - tig0020375:12916-12935 Msa1380500:intron 30.0%
TCCTTAGTAACTAAATCTCT+AGG + tig0020375:12920-12939 None:intergenic 30.0%
TAGAGATTTAGTTACTAAGG+AGG - tig0020375:12919-12938 Msa1380500:intron 30.0%
ACAGTCTCTTCTAAATCTTT+GGG + tig0020375:13049-13068 None:intergenic 30.0%
AACAGTCTCTTCTAAATCTT+TGG + tig0020375:13050-13069 None:intergenic 30.0%
!!! ATTTTGCTGTTAGTTGAAGA+TGG + tig0020375:13337-13356 None:intergenic 30.0%
! GGTGTGATATTTTCTTTTTC+AGG + tig0020375:13518-13537 None:intergenic 30.0%
TTTCTCCAAAATTTGATTGC+AGG - tig0020375:13648-13667 Msa1380500:intron 30.0%
! TTGAACCTGCAATCAAATTT+TGG + tig0020375:13656-13675 None:intergenic 30.0%
! ATTTGAGGAAGACTATTTTC+CGG - tig0020375:13922-13941 Msa1380500:intron 30.0%
! GAGAGTGATTTGTACATTAT+AGG - tig0020375:14064-14083 Msa1380500:intron 30.0%
AATAATGCTCGAAAACAAAC+AGG + tig0020375:14130-14149 None:intergenic 30.0%
!! TTGTTTTCGAGCATTATTTC+TGG - tig0020375:14132-14151 Msa1380500:intron 30.0%
!! TGTTTTCGAGCATTATTTCT+GGG - tig0020375:14133-14152 Msa1380500:intron 30.0%
TTAAGATCATACACACTTCA+GGG + tig0020375:14182-14201 None:intergenic 30.0%
ATAAGTACTTTGTAACACCT+AGG + tig0020375:14215-14234 None:intergenic 30.0%
!! ATTATTTGGTTCTGCTTCAC+AGG - tig0020375:7181-7200 Msa1380500:three_prime_UTR 35.0%
! GAATCAGTGTTTGAAATTGG+TGG + tig0020375:7281-7300 None:intergenic 35.0%
! ATTACATTCTCCGTGTTTTG+CGG - tig0020375:7381-7400 Msa1380500:intron 35.0%
TAAGCTACTATTATTGTCGG+TGG - tig0020375:7523-7542 Msa1380500:intron 35.0%
AAGTCAATGTATGTGTGTGA+CGG - tig0020375:7567-7586 Msa1380500:intron 35.0%
ACGGTCCAATCATGTTAAAA+AGG - tig0020375:7586-7605 Msa1380500:intron 35.0%
TAAATTATGCCTGTTCTGGT+TGG - tig0020375:7730-7749 Msa1380500:intron 35.0%
! AAATTATGCCTGTTCTGGTT+GGG - tig0020375:7731-7750 Msa1380500:intron 35.0%
TACAGATCTTGGTATCACAA+TGG - tig0020375:8444-8463 Msa1380500:CDS 35.0%
ACAGATCTTGGTATCACAAT+GGG - tig0020375:8445-8464 Msa1380500:CDS 35.0%
!! ACAGTTTTGATCCATTTTCC+TGG + tig0020375:8478-8497 None:intergenic 35.0%
TGGATCAAAACTGTACTGTT+TGG - tig0020375:8484-8503 Msa1380500:CDS 35.0%
GGATCAAAACTGTACTGTTT+GGG - tig0020375:8485-8504 Msa1380500:CDS 35.0%
AAATATACCAAGAGGAAGAG+AGG - tig0020375:8525-8544 Msa1380500:CDS 35.0%
CTGTAATGCCATGATAGTTA+AGG - tig0020375:8553-8572 Msa1380500:CDS 35.0%
GTTGTCATAGATAGACAGAA+AGG - tig0020375:8748-8767 Msa1380500:CDS 35.0%
! GACATCAGGATTTTCATTAC+CGG + tig0020375:8990-9009 None:intergenic 35.0%
! GAAGCAGAAAATGTTTTACC+TGG - tig0020375:9151-9170 Msa1380500:intron 35.0%
AGATCAAGAAATTGACACAG+TGG - tig0020375:9174-9193 Msa1380500:intron 35.0%
GATCAAGAAATTGACACAGT+GGG - tig0020375:9175-9194 Msa1380500:intron 35.0%
AATTCTCGAAAGCTTCTTGT+TGG - tig0020375:9768-9787 Msa1380500:intron 35.0%
! AGAGCATTTAGAGCCTTAAA+AGG - tig0020375:10060-10079 Msa1380500:CDS 35.0%
! GAGCCTTAAAAGGCATAATA+AGG - tig0020375:10070-10089 Msa1380500:intron 35.0%
AAATTACAAGCACTTGTTCG+TGG - tig0020375:10168-10187 Msa1380500:intron 35.0%
!!! CTTACCTTGTTTTACACAAG+AGG + tig0020375:10385-10404 None:intergenic 35.0%
CTCTTGTGTAAAACAAGGTA+AGG - tig0020375:10383-10402 Msa1380500:intron 35.0%
AGGACTTACTGTGCAAATAA+AGG - tig0020375:10712-10731 Msa1380500:intron 35.0%
!! CTCCTTGCTGTTCAAATAAA+TGG - tig0020375:10760-10779 Msa1380500:intron 35.0%
ACCCATTTATTTGAACAGCA+AGG + tig0020375:10765-10784 None:intergenic 35.0%
CAACAAGTCAGTGATAAGAA+AGG - tig0020375:11034-11053 Msa1380500:CDS 35.0%
! TTCTCAATGTGTTTTTCCTC+AGG - tig0020375:11113-11132 Msa1380500:CDS 35.0%
TGTAATGTAGGTTACCTTAC+GGG + tig0020375:11205-11224 None:intergenic 35.0%
GTGTAATGTAGGTTACCTTA+CGG + tig0020375:11206-11225 None:intergenic 35.0%
!!! GCTAGATCAGTTTTTTTCTG+TGG - tig0020375:11246-11265 Msa1380500:intron 35.0%
AGCAATCATGCATAAAACAG+AGG - tig0020375:11439-11458 Msa1380500:intron 35.0%
TATATTATTCGTGGCATCTC+AGG - tig0020375:11473-11492 Msa1380500:intron 35.0%
ATATTATTCGTGGCATCTCA+GGG - tig0020375:11474-11493 Msa1380500:intron 35.0%
AGAGATCACTTGAGTAATTG+GGG + tig0020375:11514-11533 None:intergenic 35.0%
CAGAGATCACTTGAGTAATT+GGG + tig0020375:11515-11534 None:intergenic 35.0%
ACAGAGATCACTTGAGTAAT+TGG + tig0020375:11516-11535 None:intergenic 35.0%
GGGAGAAATTATAGGAATGT+AGG - tig0020375:11557-11576 Msa1380500:intron 35.0%
GAAATTATAGGAATGTAGGG+GGG - tig0020375:11561-11580 Msa1380500:intron 35.0%
! GAATTAGTCTACATGCAACT+GGG + tig0020375:11851-11870 None:intergenic 35.0%
! TGAATTAGTCTACATGCAAC+TGG + tig0020375:11852-11871 None:intergenic 35.0%
TATTGACACTATTCACAGGA+AGG - tig0020375:11905-11924 Msa1380500:intron 35.0%
CTAACTGGGTTTAATTCACA+TGG - tig0020375:11928-11947 Msa1380500:intron 35.0%
AACTGGGTTTAATTCACATG+GGG - tig0020375:11930-11949 Msa1380500:intron 35.0%
GGATGTAATTGAGTAAAAGC+TGG - tig0020375:11952-11971 Msa1380500:CDS 35.0%
!! GTCCATTAATTTGTTCTGAG+TGG - tig0020375:12028-12047 Msa1380500:CDS 35.0%
!! CCATTAATTTGTTCTGAGTG+GGG - tig0020375:12030-12049 Msa1380500:CDS 35.0%
! TGGGGTTTTTGTCCATTATT+TGG - tig0020375:12048-12067 Msa1380500:CDS 35.0%
!!! ATGTGAAAACCGGGTTTTTT+TGG + tig0020375:12106-12125 None:intergenic 35.0%
GTCTAATTGATGTGAAAACC+GGG + tig0020375:12212-12231 None:intergenic 35.0%
CTTCTATTACAATTTGCCTC+TGG - tig0020375:12312-12331 Msa1380500:intron 35.0%
GAAACAACAAATAGATCCAG+AGG + tig0020375:12331-12350 None:intergenic 35.0%
ACAAACATATTGCAAACGCA+GGG + tig0020375:12384-12403 None:intergenic 35.0%
ATCCAAATTCAGTCCTTAGT+TGG - tig0020375:12408-12427 Msa1380500:intron 35.0%
! TTAGTATCCCGGATTTTCTT+GGG + tig0020375:12479-12498 None:intergenic 35.0%
!!! TTTTCTGAGACTTAGTATCC+CGG + tig0020375:12490-12509 None:intergenic 35.0%
TACTAAGTCTCAGAAAAAGC+AGG - tig0020375:12493-12512 Msa1380500:intron 35.0%
ACTAAGTCTCAGAAAAAGCA+GGG - tig0020375:12494-12513 Msa1380500:intron 35.0%
AAGCAGGGTAATATTTCAAC+TGG - tig0020375:12509-12528 Msa1380500:intron 35.0%
AAAAACCAAAACGAAACGCA+AGG - tig0020375:12624-12643 Msa1380500:intron 35.0%
! AATTTCCTTGCGTTTCGTTT+TGG + tig0020375:12632-12651 None:intergenic 35.0%
ATCTCAGATTCAACTTCTGA+CGG + tig0020375:12761-12780 None:intergenic 35.0%
! ACTGTTTCCTTTTCCAAATG+AGG + tig0020375:12791-12810 None:intergenic 35.0%
GGTCATTAGTTCCAATGAAA+TGG - tig0020375:12841-12860 Msa1380500:intron 35.0%
TTCCAATGAAATGGTCAGAA+AGG - tig0020375:12850-12869 Msa1380500:intron 35.0%
TTCCTTTCTGACCATTTCAT+TGG + tig0020375:12855-12874 None:intergenic 35.0%
!! GTAACTAAATCTCTAGGACT+AGG + tig0020375:12914-12933 None:intergenic 35.0%
ACATTCACCTGATAACTGTT+TGG + tig0020375:12956-12975 None:intergenic 35.0%
AAACAGTTATCAGGTGAATG+TGG - tig0020375:12955-12974 Msa1380500:intron 35.0%
AAACGGAGATTTGAATCACA+AGG - tig0020375:13096-13115 Msa1380500:intron 35.0%
AATCACAAGGAAGATCAAAC+AGG - tig0020375:13109-13128 Msa1380500:intron 35.0%
! TCTTCTTCTAGAGATGGAAA+TGG - tig0020375:13433-13452 Msa1380500:intron 35.0%
! TGGTGAATTTTCTATGCAGA+AGG + tig0020375:13473-13492 None:intergenic 35.0%
TACGCCAGAATAAACAAACA+TGG + tig0020375:13810-13829 None:intergenic 35.0%
AACTATTCCGTTATTCTTGC+AGG - tig0020375:13869-13888 Msa1380500:intron 35.0%
TACCTTTCCTGCAAGAATAA+CGG + tig0020375:13879-13898 None:intergenic 35.0%
CAATTTCTTCATGTCAACTC+CGG + tig0020375:13944-13963 None:intergenic 35.0%
GATCAAACACACCTATAGTT+CGG + tig0020375:14015-14034 None:intergenic 35.0%
! AGTTTATCTTCGCTGCATTT+TGG - tig0020375:14036-14055 Msa1380500:intron 35.0%
GTTAAGATCATACACACTTC+AGG + tig0020375:14183-14202 None:intergenic 35.0%
ATGTGTAAGTTAGTCACTCG+TGG + tig0020375:6906-6925 None:intergenic 40.0%
TCTCTCACTGTCTTCTTCTA+TGG - tig0020375:7048-7067 Msa1380500:three_prime_UTR 40.0%
AGTGAGGAGAAAAGAAGACA+GGG + tig0020375:7097-7116 None:intergenic 40.0%
AAGTGAGGAGAAAAGAAGAC+AGG + tig0020375:7098-7117 None:intergenic 40.0%
GAACAACTTCCACATTGGTA+AGG - tig0020375:7221-7240 Msa1380500:three_prime_UTR 40.0%
!! GTTTGAAATTGGTGGTGAAG+AGG + tig0020375:7273-7292 None:intergenic 40.0%
!! TACTAGATCTCGTCGATTCT+AGG - tig0020375:7340-7359 Msa1380500:intron 40.0%
!! ACTAGATCTCGTCGATTCTA+GGG - tig0020375:7341-7360 Msa1380500:intron 40.0%
GAACATAGAACCGCAAAACA+CGG + tig0020375:7394-7413 None:intergenic 40.0%
GAGACATGAAGCGTAATTTG+TGG - tig0020375:7472-7491 Msa1380500:intron 40.0%
CTATTATTGTCGGTGGCTTA+CGG - tig0020375:7530-7549 Msa1380500:intron 40.0%
TCAGTCTCTAAATGGATCCT+AGG + tig0020375:8407-8426 None:intergenic 40.0%
AGGCGATATCAGTCTCTAAA+TGG + tig0020375:8415-8434 None:intergenic 40.0%
ATCACAATGGGTAAATCACC+AGG - tig0020375:8457-8476 Msa1380500:CDS 40.0%
TGGGTAAATCACCAGGAAAA+TGG - tig0020375:8464-8483 Msa1380500:CDS 40.0%
AACTGTACTGTTTGGGAAGA+AGG - tig0020375:8492-8511 Msa1380500:CDS 40.0%
AGATTTACCTCTCTTCCTCT+TGG + tig0020375:8535-8554 None:intergenic 40.0%
!! TAGATCTGATGATGCCGTTT+TGG + tig0020375:8718-8737 None:intergenic 40.0%
AGGAAGCAGACATTATGCTT+TGG - tig0020375:8768-8787 Msa1380500:CDS 40.0%
ATGCACACTAGTTGTTGCAT+TGG - tig0020375:8876-8895 Msa1380500:intron 40.0%
! AGTTGTTGCTTCCAAGGTTT+CGG - tig0020375:9054-9073 Msa1380500:intron 40.0%
TAAACCAGTTTCCGAAACCT+TGG + tig0020375:9068-9087 None:intergenic 40.0%
GTGTCAATTTCTTGATCTCC+AGG + tig0020375:9172-9191 None:intergenic 40.0%
TTCATCTTCTCTGGATCAAG+TGG + tig0020375:9220-9239 None:intergenic 40.0%
!! AAAGGCACTTAGAGTTCCAT+CGG + tig0020375:9322-9341 None:intergenic 40.0%
AGTGCACTTTCTGATTGTAG+TGG - tig0020375:9394-9413 Msa1380500:intron 40.0%
AGTGCACTTTCTGATTGTAG+TGG - tig0020375:9394-9413 Msa1380500:intron 40.0%
TGTTGGAGATCAATACCTCT+TGG - tig0020375:9785-9804 Msa1380500:intron 40.0%
ACATATCAGTGAGAACCAAG+AGG + tig0020375:9803-9822 None:intergenic 40.0%
TCGATGAAAGAATTGGCAAG+TGG - tig0020375:9920-9939 Msa1380500:intron 40.0%
AAATGTCTCTATTGAAGGCC+CGG - tig0020375:10037-10056 Msa1380500:CDS 40.0%
!! TTAAGGCTCTAAATGCTCTC+CGG + tig0020375:10059-10078 None:intergenic 40.0%
AGGTTACAAGCACTTATTCG+TGG - tig0020375:10090-10109 Msa1380500:intron 40.0%
GGTTACAAGCACTTATTCGT+GGG - tig0020375:10091-10110 Msa1380500:intron 40.0%
! GCTACTTTGTGCTGTATGTA+TGG - tig0020375:10138-10157 Msa1380500:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - tig0020375:10334-10353 Msa1380500:intron 40.0%
ACAGCCTCTTGTGTAAAACA+AGG - tig0020375:10378-10397 Msa1380500:intron 40.0%
AAAAAAAAAAGGGGGCAACC+CGG + tig0020375:10475-10494 None:intergenic 40.0%
CTCTAATTTCAGTTTGGGCA+AGG + tig0020375:10592-10611 None:intergenic 40.0%
ACAATTTACGGGATAAGGCT+TGG + tig0020375:10640-10659 None:intergenic 40.0%
! AGTCCTCATTTTGAATGTCG+TGG + tig0020375:10698-10717 None:intergenic 40.0%
AAGTCAGTGATAAGAAAGGG+AGG - tig0020375:11038-11057 Msa1380500:CDS 40.0%
AGTCAGTGATAAGAAAGGGA+GGG - tig0020375:11039-11058 Msa1380500:CDS 40.0%
!! GATATAGCAATTGGCTTGAC+AGG + tig0020375:11147-11166 None:intergenic 40.0%
GTCAAGCCAATTGCTATATC+TGG - tig0020375:11147-11166 Msa1380500:CDS 40.0%
TTCTCGAAAGAAACTCAGTC+TGG + tig0020375:11281-11300 None:intergenic 40.0%
! ATGGTGGAGGGAGAAATTAT+AGG - tig0020375:11549-11568 Msa1380500:intron 40.0%
! GACCCACCGTTTGAAATAAT+AGG - tig0020375:11606-11625 Msa1380500:intron 40.0%
GAAATGCAATCTTCAAGCTG+AGG - tig0020375:11709-11728 Msa1380500:intron 40.0%
CAATCTTCAAGCTGAGGTTT+AGG - tig0020375:11715-11734 Msa1380500:intron 40.0%
GATTAAGAACACACACGGTT+AGG + tig0020375:11829-11848 None:intergenic 40.0%
ACTGGGATTAAGAACACACA+CGG + tig0020375:11834-11853 None:intergenic 40.0%
TATTCACAGGAAGGCTAACT+GGG - tig0020375:11914-11933 Msa1380500:intron 40.0%
ACTGGGTTTAATTCACATGG+GGG - tig0020375:11931-11950 Msa1380500:intron 40.0%
CCCCACTCAGAACAAATTAA+TGG + tig0020375:12033-12052 None:intergenic 40.0%
CACAAACATATTGCAAACGC+AGG + tig0020375:12385-12404 None:intergenic 40.0%
CTGCGTTTGCAATATGTTTG+TGG - tig0020375:12383-12402 Msa1380500:intron 40.0%
GACCAACTAAGGACTGAATT+TGG + tig0020375:12413-12432 None:intergenic 40.0%
!!! ATTTTCTTGGGTTGGGGAAT+TGG + tig0020375:12467-12486 None:intergenic 40.0%
! CTTAGTATCCCGGATTTTCT+TGG + tig0020375:12480-12499 None:intergenic 40.0%
GCTAGGTCAAAATTTGCAGT+AGG + tig0020375:12578-12597 None:intergenic 40.0%
! TTTTCCAGCAAAGGATCTGA+GGG + tig0020375:12665-12684 None:intergenic 40.0%
! ATTTTCCAGCAAAGGATCTG+AGG + tig0020375:12666-12685 None:intergenic 40.0%
! ATCTGTGGATTTTCCAGCAA+AGG + tig0020375:12674-12693 None:intergenic 40.0%
! GGTTAAACGTAACTTGCGAA+AGG - tig0020375:12706-12725 Msa1380500:CDS 40.0%
TGAGATTCCAAAGCCTCATT+TGG - tig0020375:12775-12794 Msa1380500:intron 40.0%
TCCAAAGCCTCATTTGGAAA+AGG - tig0020375:12781-12800 Msa1380500:intron 40.0%
! TCCTTTTCCAAATGAGGCTT+TGG + tig0020375:12785-12804 None:intergenic 40.0%
!! TTCTGAAACACCAACACTTG+AGG + tig0020375:12816-12835 None:intergenic 40.0%
!! AGTGTTGGTGTTTCAGAACA+AGG - tig0020375:12818-12837 Msa1380500:intron 40.0%
! GTGTTGGTGTTTCAGAACAA+GGG - tig0020375:12819-12838 Msa1380500:intron 40.0%
! TGTTGGTGTTTCAGAACAAG+GGG - tig0020375:12820-12839 Msa1380500:intron 40.0%
TGACACTCCAAACAGTTATC+AGG - tig0020375:12946-12965 Msa1380500:intron 40.0%
! TAGCTCCAGTTGAGGTTTTT+CGG + tig0020375:13156-13175 None:intergenic 40.0%
TCCGACGATACCAAGTTATA+TGG - tig0020375:13210-13229 Msa1380500:intron 40.0%
GCCATATAACTTGGTATCGT+CGG + tig0020375:13214-13233 None:intergenic 40.0%
TCAGTTGCTGCCATATAACT+TGG + tig0020375:13223-13242 None:intergenic 40.0%
AATCTGCCAAGGCAAAATTG+AGG - tig0020375:13242-13261 Msa1380500:intron 40.0%
ATCTGCCAAGGCAAAATTGA+GGG - tig0020375:13243-13262 Msa1380500:intron 40.0%
TCACCAAAAGTCGTACAAGA+TGG - tig0020375:13274-13293 Msa1380500:intron 40.0%
! CTTCCATCTTGTACGACTTT+TGG + tig0020375:13280-13299 None:intergenic 40.0%
GTGAGAAAAACAACAGTGCT+CGG - tig0020375:13299-13318 Msa1380500:intron 40.0%
AAATCAGTTCGCATTCACCT+AGG - tig0020375:13353-13372 Msa1380500:intron 40.0%
CAGTTCATTCAGGTGGTAAA+GGG - tig0020375:13386-13405 Msa1380500:intron 40.0%
AGTTCATTCAGGTGGTAAAG+GGG - tig0020375:13387-13406 Msa1380500:intron 40.0%
! GCAGTATCTTCTTCTAGAGA+TGG - tig0020375:13427-13446 Msa1380500:intron 40.0%
TTCCGTTATTCTTGCAGGAA+AGG - tig0020375:13874-13893 Msa1380500:intron 40.0%
GAAAGGTAGTTCAAGCAGAA+TGG - tig0020375:13891-13910 Msa1380500:intron 40.0%
TAGTTCAAGCAGAATGGAAG+AGG - tig0020375:13897-13916 Msa1380500:intron 40.0%
AGAATGGAAGAGGTGATTTG+AGG - tig0020375:13907-13926 Msa1380500:intron 40.0%
TGCTGAATTGACCGAACTAT+AGG - tig0020375:14001-14020 Msa1380500:intron 40.0%
ATCTTAACACGTACCTTCCT+AGG - tig0020375:14195-14214 Msa1380500:five_prime_UTR 40.0%
GTACTTTGTAACACCTAGGA+AGG + tig0020375:14211-14230 None:intergenic 40.0%
!! TTGGTTCTGCTTCACAGGAA+TGG - tig0020375:7186-7205 Msa1380500:three_prime_UTR 45.0%
GAGCTGAACAACTTCCACAT+TGG - tig0020375:7216-7235 Msa1380500:three_prime_UTR 45.0%
GTGGTGAAGAGGTTGTTTGA+GGG + tig0020375:7262-7281 None:intergenic 45.0%
!! AACCAAGCACTGAAAGAAGC+TGG - tig0020375:8209-8228 Msa1380500:CDS 45.0%
CACTGAAAGAAGCTGGCTAT+AGG - tig0020375:8216-8235 Msa1380500:CDS 45.0%
! ATGTACGGCAATAGTGTTGG+AGG + tig0020375:9104-9123 None:intergenic 45.0%
CACATGTACGGCAATAGTGT+TGG + tig0020375:9107-9126 None:intergenic 45.0%
CAACACTATTGCCGTACATG+TGG - tig0020375:9105-9124 Msa1380500:intron 45.0%
CTTCTTTATTCTCCAGCTCC+AGG + tig0020375:9135-9154 None:intergenic 45.0%
AGTGGTGCATCTTGATCAAC+AGG + tig0020375:9202-9221 None:intergenic 45.0%
TGATCCAGAGAAGATGAAGC+TGG - tig0020375:9222-9241 Msa1380500:intron 45.0%
! AAAAGCACAGGCTGCTTTCA+GGG - tig0020375:9258-9277 Msa1380500:intron 45.0%
! ACATTGCTTGATAGCTGCTC+TGG + tig0020375:9692-9711 None:intergenic 45.0%
!! TAAGGCTCTAAATGCTCTCC+GGG + tig0020375:10058-10077 None:intergenic 45.0%
GTGCAATCTATTGAAGCTCC+AGG - tig0020375:10236-10255 Msa1380500:intron 45.0%
TATTTGTCGAGGGGTAACCT+TGG - tig0020375:10298-10317 Msa1380500:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - tig0020375:10340-10359 Msa1380500:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - tig0020375:10341-10360 Msa1380500:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + tig0020375:10374-10393 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - tig0020375:10405-10424 Msa1380500:intron 45.0%
! TCTTCTGATTAGTCCATGGG+TGG - tig0020375:10527-10546 Msa1380500:intron 45.0%
! CTTCTGATTAGTCCATGGGT+GGG - tig0020375:10528-10547 Msa1380500:intron 45.0%
! TTCTGATTAGTCCATGGGTG+GGG - tig0020375:10529-10548 Msa1380500:intron 45.0%
TCAGTTTGGGCAAGGAAATC+AGG + tig0020375:10584-10603 None:intergenic 45.0%
GATCATAATTCTTGCTGGGC+TGG - tig0020375:10669-10688 Msa1380500:intron 45.0%
CAGCCACGACATTCAAAATG+AGG - tig0020375:10692-10711 Msa1380500:intron 45.0%
! GTGCAAATAAAGGTGCAAGC+TGG - tig0020375:10722-10741 Msa1380500:intron 45.0%
!! CAAGCTGGTGCTTTAAAGCT+TGG - tig0020375:10737-10756 Msa1380500:intron 45.0%
GTCAGTGATAAGAAAGGGAG+GGG - tig0020375:11040-11059 Msa1380500:CDS 45.0%
!! AGCAATTGGCTTGACAGGTT+TGG + tig0020375:11142-11161 None:intergenic 45.0%
AGCAAACACTTTCACCCGTA+AGG - tig0020375:11188-11207 Msa1380500:intron 45.0%
CTATTCACAGGAAGGCTAAC+TGG - tig0020375:11913-11932 Msa1380500:intron 45.0%
TTCCCCAACCCAAGAAAATC+CGG - tig0020375:12468-12487 Msa1380500:intron 45.0%
! ATCCCGGATTTTCTTGGGTT+GGG + tig0020375:12474-12493 None:intergenic 45.0%
! TATCCCGGATTTTCTTGGGT+TGG + tig0020375:12475-12494 None:intergenic 45.0%
! TTTCAGGGTTTGCTTGTGCT+GGG + tig0020375:12601-12620 None:intergenic 45.0%
! ATTTCAGGGTTTGCTTGTGC+TGG + tig0020375:12602-12621 None:intergenic 45.0%
TCCACAGATTGAGCTTGAGA+AGG - tig0020375:12685-12704 Msa1380500:CDS 45.0%
ACCTTCTCAAGCTCAATCTG+TGG + tig0020375:12689-12708 None:intergenic 45.0%
GAACTGCAGCTTCAACAACT+GGG + tig0020375:12739-12758 None:intergenic 45.0%
GAAACAGTTGCCTCAAGTGT+TGG - tig0020375:12803-12822 Msa1380500:intron 45.0%
TTAACCAGTGAGCCAGAGAT+GGG - tig0020375:12881-12900 Msa1380500:intron 45.0%
CTAGGAGTAATTCCCATCTC+TGG + tig0020375:12896-12915 None:intergenic 45.0%
!!! AGGTTTTTCGGGTTGGTTTC+TGG + tig0020375:13144-13163 None:intergenic 45.0%
! AGCTCCAGTTGAGGTTTTTC+GGG + tig0020375:13155-13174 None:intergenic 45.0%
! TTGAGCCCTCAATTTTGCCT+TGG + tig0020375:13251-13270 None:intergenic 45.0%
AAGGCAAAATTGAGGGCTCA+AGG - tig0020375:13250-13269 Msa1380500:intron 45.0%
GCTGTTAGTTGAAGATGGCA+GGG + tig0020375:13332-13351 None:intergenic 45.0%
TGCTGTTAGTTGAAGATGGC+AGG + tig0020375:13333-13352 None:intergenic 45.0%
ACACAGAGACCAGTTCATTC+AGG - tig0020375:13376-13395 Msa1380500:intron 45.0%
CCTTTACCACCTGAATGAAC+TGG + tig0020375:13388-13407 None:intergenic 45.0%
CCAGTTCATTCAGGTGGTAA+AGG - tig0020375:13385-13404 Msa1380500:intron 45.0%
GTTCATTCAGGTGGTAAAGG+GGG - tig0020375:13388-13407 Msa1380500:intron 45.0%
!! AATTATAATAAAAAAAAAAG+GGG + tig0020375:10484-10503 None:intergenic 5.0%
GGTGGTGAAGAGGTTGTTTG+AGG + tig0020375:7263-7282 None:intergenic 50.0%
TTATTGTCGGTGGCTTACGG+TGG - tig0020375:7533-7552 Msa1380500:intron 50.0%
! ATGCCTGTTCTGGTTGGGTT+CGG - tig0020375:7736-7755 Msa1380500:intron 50.0%
AAACCGAACCCAACCAGAAC+AGG + tig0020375:7742-7761 None:intergenic 50.0%
AGCCAGCTTCTTTCAGTGCT+TGG + tig0020375:8214-8233 None:intergenic 50.0%
! GGAAGGAGTTGTTGCTTCCA+AGG - tig0020375:9048-9067 Msa1380500:intron 50.0%
GCTTCCAAGGTTTCGGAAAC+TGG - tig0020375:9061-9080 Msa1380500:intron 50.0%
! ACGGCAATAGTGTTGGAGGA+TGG + tig0020375:9100-9119 None:intergenic 50.0%
CTCCAGGTCTTCCACATGTA+CGG + tig0020375:9119-9138 None:intergenic 50.0%
TCCAGAGAAGATGAAGCTGG+AGG - tig0020375:9225-9244 Msa1380500:intron 50.0%
TCCTCCAGCTTCATCTTCTC+TGG + tig0020375:9229-9248 None:intergenic 50.0%
! GGAAGCAGCTACAAAAGCAC+AGG - tig0020375:9246-9265 Msa1380500:intron 50.0%
! CAAAAGCACAGGCTGCTTTC+AGG - tig0020375:9257-9276 Msa1380500:intron 50.0%
! AAAGCACAGGCTGCTTTCAG+GGG - tig0020375:9259-9278 Msa1380500:intron 50.0%
! GGCTGCTTTCAGGGGTTATT+TGG - tig0020375:9267-9286 Msa1380500:intron 50.0%
AGCACTTATTCGTGGGCACT+TGG - tig0020375:10098-10117 Msa1380500:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + tig0020375:10318-10337 None:intergenic 50.0%
CAAATGGTGAGACCGCTTCT+CGG - tig0020375:10421-10440 Msa1380500:intron 50.0%
GTGCAATGCACAAGCTGTTG+CGG - tig0020375:10864-10883 Msa1380500:intron 50.0%
AGTGATAAGAAAGGGAGGGG+AGG - tig0020375:11043-11062 Msa1380500:CDS 50.0%
TTGACAGGTTTGGCATCCTG+AGG + tig0020375:11132-11151 None:intergenic 50.0%
TCCCCAACCCAAGAAAATCC+GGG - tig0020375:12469-12488 Msa1380500:intron 50.0%
!! TCCCGGATTTTCTTGGGTTG+GGG + tig0020375:12473-12492 None:intergenic 50.0%
CCTGTGGGTACGTTTAGACT+TGG + tig0020375:12549-12568 None:intergenic 50.0%
CCAAGTCTAAACGTACCCAC+AGG - tig0020375:12546-12565 Msa1380500:intron 50.0%
TGCAGTAGGAAGCTTCCTGT+GGG + tig0020375:12564-12583 None:intergenic 50.0%
TTGCAGTAGGAAGCTTCCTG+TGG + tig0020375:12565-12584 None:intergenic 50.0%
! TTCAGGGTTTGCTTGTGCTG+GGG + tig0020375:12600-12619 None:intergenic 50.0%
!! AAAGGATCTGAGGGTTGGCT+AGG + tig0020375:12656-12675 None:intergenic 50.0%
GGAACTGCAGCTTCAACAAC+TGG + tig0020375:12740-12759 None:intergenic 50.0%
GTTAACCAGTGAGCCAGAGA+TGG - tig0020375:12880-12899 Msa1380500:intron 50.0%
! AATTCCCATCTCTGGCTCAC+TGG + tig0020375:12888-12907 None:intergenic 50.0%
!!! CCAGTTGAGGTTTTTCGGGT+TGG + tig0020375:13151-13170 None:intergenic 50.0%
CCAACCCGAAAAACCTCAAC+TGG - tig0020375:13148-13167 Msa1380500:intron 50.0%
AACCTCAACTGGAGCTAAGC+AGG - tig0020375:13159-13178 Msa1380500:intron 50.0%
TTCCTGCTTAGCTCCAGTTG+AGG + tig0020375:13164-13183 None:intergenic 50.0%
AAGCAGGAACGTGCAGAGAA+TGG - tig0020375:13175-13194 Msa1380500:intron 50.0%
! TGAACTGGTCTCTGTGTCCT+AGG + tig0020375:13373-13392 None:intergenic 50.0%
CAGAGACCAGTTCATTCAGG+TGG - tig0020375:13379-13398 Msa1380500:intron 50.0%
CTCTCTGTCACTGTGCTAGC+TGG + tig0020375:6980-6999 None:intergenic 55.0%
TGCCGTACATGTGGAAGACC+TGG - tig0020375:9114-9133 Msa1380500:intron 55.0%
ACATGTGGAAGACCTGGAGC+TGG - tig0020375:9120-9139 Msa1380500:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - tig0020375:10353-10372 Msa1380500:intron 55.0%
CGAGAAGCGGTCTCACCATT+TGG + tig0020375:10423-10442 None:intergenic 55.0%
CATATGCAGGGTCCGAGAAG+CGG + tig0020375:10436-10455 None:intergenic 55.0%
CTTCTCGGACCCTGCATATG+CGG - tig0020375:10436-10455 Msa1380500:intron 55.0%
TTCTCGGACCCTGCATATGC+GGG - tig0020375:10437-10456 Msa1380500:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + tig0020375:10448-10467 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + tig0020375:10449-10468 None:intergenic 55.0%
! GATTAGTCCATGGGTGGGGT+TGG - tig0020375:10533-10552 Msa1380500:intron 55.0%
TCATATGCCAACCCCACCCA+TGG + tig0020375:10543-10562 None:intergenic 55.0%
! TCCTTAGTTGGTCTGAGCGC+TGG - tig0020375:12420-12439 Msa1380500:intron 55.0%
ACCAGCGCTCAGACCAACTA+AGG + tig0020375:12424-12443 None:intergenic 55.0%
!!! GCTGGTCAGCATGTCGGTTT+TGG - tig0020375:12438-12457 Msa1380500:intron 55.0%
CCAGCAAAGGATCTGAGGGT+TGG + tig0020375:12661-12680 None:intergenic 55.0%
CCAACCCTCAGATCCTTTGC+TGG - tig0020375:12658-12677 Msa1380500:intron 55.0%
GGCAGCAACTGAATCTGCCA+AGG - tig0020375:13231-13250 Msa1380500:intron 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - tig0020375:10307-10326 Msa1380500:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - tig0020375:10453-10472 Msa1380500:intron 60.0%
!! CTGAGCGCTGGTCAGCATGT+CGG - tig0020375:12432-12451 Msa1380500:intron 60.0%
! GGTTTGCTTGTGCTGGGGCT+AGG + tig0020375:12595-12614 None:intergenic 60.0%
! TGCGGGAGCTCTAGTGCACC+GGG - tig0020375:10454-10473 Msa1380500:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020375 gene 6900 14321 6900 ID=Msa1380500;Name=Msa1380500
tig0020375 mRNA 6900 14321 6900 ID=Msa1380500-mRNA-1;Parent=Msa1380500;Name=Msa1380500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=224|1|1|1|0.71|0.75|8|399|584
tig0020375 exon 6900 7330 6900 ID=Msa1380500-mRNA-1:exon:7159;Parent=Msa1380500-mRNA-1
tig0020375 exon 7767 8868 7767 ID=Msa1380500-mRNA-1:exon:7158;Parent=Msa1380500-mRNA-1
tig0020375 exon 10012 10086 10012 ID=Msa1380500-mRNA-1:exon:7157;Parent=Msa1380500-mRNA-1
tig0020375 exon 10964 11167 10964 ID=Msa1380500-mRNA-1:exon:7156;Parent=Msa1380500-mRNA-1
tig0020375 exon 11933 12190 11933 ID=Msa1380500-mRNA-1:exon:7155;Parent=Msa1380500-mRNA-1
tig0020375 exon 12675 12772 12675 ID=Msa1380500-mRNA-1:exon:7154;Parent=Msa1380500-mRNA-1
tig0020375 exon 13979 14018 13979 ID=Msa1380500-mRNA-1:exon:7153;Parent=Msa1380500-mRNA-1
tig0020375 exon 14152 14321 14152 ID=Msa1380500-mRNA-1:exon:7152;Parent=Msa1380500-mRNA-1
tig0020375 five_prime_UTR 14152 14321 14152 ID=Msa1380500-mRNA-1:five_prime_utr;Parent=Msa1380500-mRNA-1
tig0020375 five_prime_UTR 13979 14018 13979 ID=Msa1380500-mRNA-1:five_prime_utr;Parent=Msa1380500-mRNA-1
tig0020375 five_prime_UTR 12759 12772 12759 ID=Msa1380500-mRNA-1:five_prime_utr;Parent=Msa1380500-mRNA-1
tig0020375 CDS 12675 12758 12675 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 CDS 11933 12190 11933 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 CDS 10964 11167 10964 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 CDS 10012 10086 10012 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 CDS 7767 8868 7767 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 CDS 7299 7330 7299 ID=Msa1380500-mRNA-1:cds;Parent=Msa1380500-mRNA-1
tig0020375 three_prime_UTR 6900 7298 6900 ID=Msa1380500-mRNA-1:three_prime_utr;Parent=Msa1380500-mRNA-1
Gene Sequence

>Msa1380500

ATGGGTAAATCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAGGCATCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCGGAAACTGGTTTAGCTTTAGAGCCATCCTCCAACACTATTGCCGTACATGTGGAAGACCTGGAGCTGGAGAATAAAGAAGCAGAAAATGTTTTACCTGGAGATCAAGAAATTGACACAGTGGGACCTGTTGATCAAGATGCACCACTTGATCCAGAGAAGATGAAGCTGGAGGAAGCAGCTACAAAAGCACAGGCTGCTTTCAGGGGTTATTTGGCCCGGAGAGCATTTAGAGCCTTAAAAGGCATAATAAGGTTACAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGCTACTTTGTGCTGTATGTATGGAATTGTCAAATTACAAGCACTTGTTCGTGGACAAATAATTAGAAAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAATCTATTGAAGCTCCAGGATGCCAAACCTGTCAAGCCAATTGCTATATCTGGTAAAATTATGAAGCTGTCAGCAAACACTTTCACCCGTAAGCTTATTGCTTCATCAACTACAATTATGGCCCTGCGTTTGCAATATGTTTGTGGTGATCCAAATTCAGTCCTTAGTTGGTCTGAGCGCTGGTCAGCATGTCGGTTTTGGAAGCCAATTCCCCAACCCAAGAAAATCCGGGATACTAAGTCTCAGAAAAAGCAGGGTAATATTTCAACTGGAGACGCTCAGATGACCAAGTCTAAACGTACCCACAGGAAGCTTCCTACTGCAAATTTTGACCTAGCCCCAGCACAAGCAAACCCTGAAATTGAAAAACCAAAACGAAACGCAAGGAAATTTCCTAGCCAACCCTCAGATCCTTTGCTGGAAAATCCACAGATTGAGCTTGAGAAGGTTAAACGTAACTTGCGAAAGGTTCATAACCCAGTTGTTGAAGCTGCAGTTCCGTCAGAAGTTGAATCTGAGATTCCAAAGCCTCATTTGGAAAAGGAAACAGTTGCCTCAAGTGTTGGTGTTTCAGAACAAGGGGTCATTAGTTCCAATGAAATGGTCAGAAAGGAAGCAATGTTAACCAGTGAGCCAGAGATGGGAATTACTCCTAGTCCTAGAGATTTAGTTACTAAGGAGGTGTTTGACACTCCAAACAGTTATCAGGTGAATGTGGAATCAAAGCCTTTGACAGATATTACAAGTAAAGATAAAAACATTTCCGATGATGAAGTTAAAAACGAACCCAAAGATTTAGAAGAGACTGTTTGCAAAGATGAAAATTCTCACTTAACAAACGGAGATTTGAATCACAAGGAAGATCAAACAGGAAGTGAAAACCAGAAACCAACCCGAAAAACCTCAACTGGAGCTAAGCAGGAACGTGCAGAGAATGGTTTGCATAATAGTCCGACGATACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAATTGAGGGCTCAAGGATCACCAAAAGTCGTACAAGATGGAAGTGAGAAAAACAACAGTGCTCGGCGACAGTCCCTGCCATCTTCAACTAACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGACCAGTTCATTCAGGTGGTAAAGGGGGACATAAAAGTGACAAAGCAGTATCTTCTTCTAGAGATGGAAATGGAAAGGTAGTTCAAGCAGAATGGAAGAGGTGA
Protein sequence

>Msa1380500

MGKSPGKWIKTVLFGKKASKSNIPRGREKLVNQKEGVVASKVSETGLALEPSSNTIAVHVEDLELENKEAENVLPGDQEIDTVGPVDQDAPLDPEKMKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGQIIRKSDVGFEIHEKCNLLKLQDAKPVKPIAISGKIMKLSANTFTRKLIASSTTIMALRLQYVCGDPNSVLSWSERWSACRFWKPIPQPKKIRDTKSQKKQGNISTGDAQMTKSKRTHRKLPTANFDLAPAQANPEIEKPKRNARKFPSQPSDPLLENPQIELEKVKRNLRKVHNPVVEAAVPSEVESEIPKPHLEKETVASSVGVSEQGVISSNEMVRKEAMLTSEPEMGITPSPRDLVTKEVFDTPNSYQVNVESKPLTDITSKDKNISDDEVKNEPKDLEETVCKDENSHLTNGDLNHKEDQTGSENQKPTRKTSTGAKQERAENGLHNSPTIPSYMAATESAKAKLRAQGSPKVVQDGSEKNNSARRQSLPSSTNSKISSHSPRTQRPVHSGGKGGHKSDKAVSSSRDGNGKVVQAEWKR*